FastQCFastQC Report
Wed 16 Nov 2016
SRR1945725.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945725.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37777752
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT77650.032.3689771
TATGCCG65350.030.8479963
GCCGTAT62750.029.00148267
CGCCGTA62800.028.97850666
CGTATGC72700.027.77658361
ATGCCGT72000.027.51490664
GTATGCC77000.026.31760662
GGTCGCC78300.024.71621563
GCCGTCT82000.024.54518766
CGAGATC184500.023.55653418
CCGTATC79700.023.05259568
TGCCGTC88800.022.50825165
GCTGAAC113150.021.83216711
TGGTCGC92300.020.473762
CGTGTAG107250.020.26151335
TCGTATG101550.019.81606960
ATTCCTG135050.019.0510445
AACCGAG119800.018.78679515
TTCCTGC142950.018.017836
CCTGCTG143200.017.753078