FastQCFastQC Report
Wed 16 Nov 2016
SRR1945641.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945641.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82041590
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG1156180.14092608395327297Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT256100.037.387951
CGAGATC547200.030.5231518
CCGAGAT584050.028.61160317
CCTGCTG325050.027.7448838
GGCATTC347050.026.8437042
GCTGAAC323050.026.81718611
GCATTCC365800.025.5813143
TATGCCG219250.024.86040763
ATTCCTG377950.024.6818145
GAGATCG706650.023.6594619
AACCGAG327000.023.47763315
TTCCTGC405300.023.1908076
CGTATGC250100.022.50583361
TGAACCG390250.022.11021613
GAGACCG402900.022.03925150
GTATGCC252250.021.94002762
GAACCGA350700.021.6516814
CTGAACC408200.021.5059812
ATGCCGT220350.021.4518864
CGAGACC419200.021.25318349