Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945698.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 51250496 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 489775 | 0.9556492877649418 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 120160 | 0.23445626750617202 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG | 52361 | 0.1021668161026188 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 181375 | 0.0 | 63.883495 | 9 |
GCGGTTC | 179540 | 0.0 | 63.304276 | 11 |
AGCGGTT | 181880 | 0.0 | 63.027817 | 10 |
CGGTTCA | 181055 | 0.0 | 62.471966 | 12 |
AGAGCGG | 187755 | 0.0 | 62.206814 | 8 |
CAGCAGG | 176300 | 0.0 | 62.09232 | 17 |
GTTCAGC | 179755 | 0.0 | 61.611565 | 14 |
GGTTCAG | 184795 | 0.0 | 60.971622 | 13 |
AATGCCG | 169730 | 0.0 | 60.753147 | 24 |
TGCCGAG | 167620 | 0.0 | 60.370697 | 26 |
GAATGCC | 173875 | 0.0 | 59.89163 | 23 |
ATGCCGA | 171065 | 0.0 | 59.72769 | 25 |
GGAATGC | 177600 | 0.0 | 59.681366 | 22 |
TCAGCAG | 185425 | 0.0 | 59.513832 | 16 |
CAGGAAT | 180030 | 0.0 | 59.46753 | 20 |
CCGAGAC | 168160 | 0.0 | 59.463898 | 28 |
GCCGAGA | 170030 | 0.0 | 59.39516 | 27 |
AGCAGGA | 185310 | 0.0 | 59.10306 | 18 |
CGAGACC | 167980 | 0.0 | 59.044193 | 29 |
GCAGGAA | 183120 | 0.0 | 58.9778 | 19 |