Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945575.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38170432 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 39624 | 0.10380809942103876 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12910 | 0.0 | 18.396414 | 5 |
TATACTG | 19300 | 0.0 | 15.323931 | 5 |
CATACAC | 112565 | 0.0 | 15.238847 | 3 |
TCTATAC | 25395 | 0.0 | 15.104596 | 3 |
TACCGTG | 9685 | 0.0 | 14.805869 | 7 |
ATACCGT | 11965 | 0.0 | 14.681044 | 6 |
ACATGAC | 98675 | 0.0 | 14.486602 | 8 |
ACACATG | 115320 | 0.0 | 14.447353 | 6 |
CCGTGAG | 9475 | 0.0 | 14.235437 | 9 |
CACATGA | 111110 | 0.0 | 13.909887 | 7 |
CATGACA | 101625 | 0.0 | 13.863266 | 9 |
TCATACA | 122655 | 0.0 | 13.71344 | 2 |
TATACAG | 18650 | 0.0 | 13.671527 | 5 |
CTAGTAC | 11865 | 0.0 | 13.596224 | 3 |
CTATACT | 20570 | 0.0 | 13.571795 | 4 |
GTGTATG | 102080 | 0.0 | 13.224362 | 1 |
GTATAGA | 28225 | 0.0 | 13.189535 | 1 |
ATCATAC | 123570 | 0.0 | 13.187636 | 1 |
CTATACC | 19645 | 0.0 | 13.024697 | 4 |
ACCGTGA | 12765 | 0.0 | 12.70781 | 8 |