FastQCFastQC Report
Wed 16 Nov 2016
SRR1945741.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945741.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76286140
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG773400.030.6244344
AGAGCGT424350.029.190319
AAGAGCG483700.026.3913888
GATCGGA916050.026.074082
CGGAAGA920250.025.839665
ATCGGAA962350.024.7829463
GAAGAGC1040700.023.075857
GGTCGCC263700.022.656244-45
AGAGCAC560400.022.608689
TGCCGTC261950.021.13245648-49
CGCCGTA283050.021.01359446-47
AGATCGG1224400.020.8080221
TATGCCG277700.020.29999446-47
ATGCCGT275350.020.27383848-49
GCCGTCT274800.020.2518950-51
TGGTCGC288650.020.17476342-43
GAGCGTC333100.018.80736410-11
GTATGCC310300.018.551146-47
AGCGTCG341450.018.41536510-11
GGAAGAG1317100.018.3839046