Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945442.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 48712152 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 24610 | 0.0 | 15.801587 | 5 |
TATACCG | 14165 | 0.0 | 14.449145 | 5 |
GTCGCGC | 2535 | 0.0 | 14.266249 | 8 |
CTATACT | 25770 | 0.0 | 14.106906 | 4 |
CATACAC | 146055 | 0.0 | 13.722232 | 3 |
TATGAGC | 19480 | 0.0 | 13.556989 | 94 |
TCTATAC | 28300 | 0.0 | 13.4510565 | 3 |
TAGGCTG | 14745 | 0.0 | 13.170603 | 5 |
ACATGAC | 107065 | 0.0 | 13.156931 | 8 |
TATACAG | 22495 | 0.0 | 13.097696 | 5 |
ACACATG | 146245 | 0.0 | 13.067569 | 6 |
GTGTATG | 132465 | 0.0 | 12.617856 | 1 |
CATGACA | 110430 | 0.0 | 12.484935 | 9 |
GTATATA | 68455 | 0.0 | 12.471633 | 1 |
GTATAGA | 30280 | 0.0 | 12.428385 | 1 |
TCATACA | 158880 | 0.0 | 12.423432 | 2 |
CACATGA | 137940 | 0.0 | 12.3878355 | 7 |
CTAGGCT | 13790 | 0.0 | 12.352976 | 4 |
ATCATAC | 155235 | 0.0 | 12.323116 | 1 |
TACCGTG | 12405 | 0.0 | 12.163364 | 7 |