Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945479.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 42902192 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGGGGT | 4135 | 0.0 | 16.674726 | 39 |
TCGGGGG | 6190 | 0.0 | 15.492802 | 38 |
GGGGGTC | 5715 | 0.0 | 14.69823 | 40 |
GGGTCGC | 5820 | 0.0 | 13.770464 | 42 |
CGCCGTA | 6095 | 0.0 | 12.633129 | 46 |
GGTCGCC | 6125 | 0.0 | 12.511658 | 43 |
GCGGCGC | 2880 | 0.0 | 12.028036 | 11 |
CGGCGCG | 2455 | 0.0 | 11.829957 | 12 |
AATGCCG | 11820 | 0.0 | 11.543106 | 24 |
GAGACCG | 10660 | 0.0 | 11.529218 | 61 |
CGAGACC | 10795 | 0.0 | 11.385515 | 60 |
CTCGGGG | 6175 | 0.0 | 11.165992 | 37 |
GGGCGCC | 2405 | 0.0 | 11.057969 | 43 |
GACCGAT | 12000 | 0.0 | 10.416839 | 63 |
GGCGCGG | 2965 | 0.0 | 10.38518 | 13 |
CGGCATT | 6135 | 0.0 | 10.276766 | 1 |
TGCCGAG | 13485 | 0.0 | 10.14462 | 26 |
GAGCGGT | 13875 | 0.0 | 10.062023 | 9 |
GCGCGGC | 2025 | 0.0 | 9.849278 | 14 |
ATGCCGA | 14515 | 0.0 | 9.544923 | 25 |