Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945531.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41946396 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 20980 | 0.0 | 11.290112 | 5 |
CTATACT | 21225 | 0.0 | 11.248359 | 4 |
CATACAC | 124675 | 0.0 | 11.034279 | 3 |
ACATGAC | 101185 | 0.0 | 10.733951 | 8 |
ACACATG | 127345 | 0.0 | 10.676804 | 6 |
GTATATA | 59530 | 0.0 | 10.617301 | 1 |
TATACCG | 13520 | 0.0 | 10.602208 | 5 |
GTATTAG | 24850 | 0.0 | 10.503096 | 1 |
GTGTATG | 118525 | 0.0 | 10.450969 | 1 |
CATGACA | 103010 | 0.0 | 10.397905 | 9 |
CACATGA | 120115 | 0.0 | 10.235645 | 7 |
TCATACA | 135990 | 0.0 | 10.082059 | 2 |
ATCATAC | 133525 | 0.0 | 9.939055 | 1 |
GTATAGG | 15880 | 0.0 | 9.891148 | 1 |
TCTATAC | 25560 | 0.0 | 9.8744755 | 3 |
GTCGCGC | 2000 | 0.0 | 9.869498 | 8 |
TAGACAG | 14265 | 0.0 | 9.620203 | 5 |
TATACTA | 38705 | 0.0 | 9.568246 | 5 |
GTATTAT | 33750 | 0.0 | 9.530881 | 1 |
GTATAAT | 32915 | 0.0 | 9.529777 | 1 |