FastQCFastQC Report
Wed 16 Nov 2016
SRR1945544.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945544.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35325694
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG181200.013.4867355
TATACCG122950.012.4609385
CTATACT187900.012.3805554
TAGACTG79650.012.0366635
GTATTAG263500.012.0290631
TCTATAC228050.011.9120843
TATACAG218450.011.5742255
GTATAGA235450.011.3848871
CTAGTAC113050.010.9339013
CATACAC741900.010.9151543
TAATACT352950.010.8918544
GTATATA502600.010.6387471
TACCGTG88450.010.4141017
ACATGAC628750.010.3673458
GTGTATG693050.010.28696251
GTATAGG134950.010.2802021
ATACCGT138750.010.1952166
GTACTAG130150.010.1534751
ACACATG726000.010.0595216
CATGACA650350.09.9291719