FastQCFastQC Report
Wed 16 Nov 2016
SRR1945488.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945488.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38666202
Sequences flagged as poor quality0
Sequence length100
%GC35

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCACGC39300.05.85905928-29
TCACGCC48650.05.02283330-31