Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945533.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27532180 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 13850 | 0.0 | 14.285535 | 5 |
CTATACT | 14430 | 0.0 | 12.669149 | 4 |
TATACCG | 9595 | 0.0 | 12.538892 | 5 |
TCTATAC | 18280 | 0.0 | 11.647077 | 3 |
ACTGTGC | 4420 | 0.0 | 11.058126 | 8 |
ATACCGT | 10580 | 0.0 | 11.016219 | 6 |
TAGACTG | 6080 | 0.0 | 10.898827 | 5 |
TACCGTG | 7465 | 0.0 | 10.891378 | 7 |
TATACAG | 15895 | 0.0 | 10.880565 | 5 |
GTATAGA | 20685 | 0.0 | 10.458824 | 1 |
GTATATA | 38850 | 0.0 | 10.314048 | 1 |
CTATACC | 12395 | 0.0 | 10.2372055 | 4 |
GTATTAG | 19700 | 0.0 | 10.122323 | 1 |
TAATACT | 27170 | 0.0 | 10.118833 | 4 |
CATACAC | 57560 | 0.0 | 10.018869 | 3 |
CCTATAC | 10315 | 0.0 | 9.93304 | 3 |
CCGTGAG | 5665 | 0.0 | 9.872461 | 9 |
CCGTGCG | 2055 | 0.0 | 9.834108 | 9 |
TACACTG | 8235 | 0.0 | 9.815874 | 5 |
GTATAGG | 10115 | 0.0 | 9.810636 | 1 |