FastQCFastQC Report
Wed 16 Nov 2016
SRR1945458.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945458.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66694726
Sequences flagged as poor quality0
Sequence length40-101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC66700.06.47872444-45
TCGGAAG366100.05.76424364
CGCCGTA77800.05.594246-47
TGCCGTC89400.05.210015348-49
TATGCCG91500.05.137126446-47