Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945693.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 74470902 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 11015 | 0.0 | 17.849905 | 56 |
GCCGTAT | 11230 | 0.0 | 17.16602 | 57 |
GGTCGCC | 12570 | 0.0 | 16.923761 | 53 |
TATGCCG | 10365 | 0.0 | 15.839572 | 53 |
TGGTCGC | 14745 | 0.0 | 14.497882 | 52 |
CGTATGC | 11615 | 0.0 | 14.286699 | 51 |
CCGTATC | 14460 | 0.0 | 13.476816 | 58 |
GTATGCC | 12680 | 0.0 | 13.167599 | 52 |
ATGCCGT | 11180 | 0.0 | 12.681985 | 54 |
CGTGTAG | 19025 | 0.0 | 12.083414 | 25 |
TGCCGTC | 11925 | 0.0 | 11.392178 | 55 |
GAGCGTC | 20030 | 0.0 | 11.354471 | 19 |
GCGTCGT | 20545 | 0.0 | 11.102719 | 21 |
AGCGTCG | 20640 | 0.0 | 11.068579 | 20 |
CGTATCA | 18095 | 0.0 | 11.059308 | 59 |
GTCGTGT | 21060 | 0.0 | 11.0400305 | 23 |
CTCGGTG | 21450 | 0.0 | 10.962753 | 47 |
GAGACCG | 21370 | 0.0 | 10.895623 | 40 |
TGTAGGG | 21560 | 0.0 | 10.676811 | 27 |
TCGGTGG | 21885 | 0.0 | 10.643003 | 48 |