FastQCFastQC Report
Wed 16 Nov 2016
SRR1945639.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945639.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105005694
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT248400.017.6244771
GGCATTC426100.010.8992952
CCTGCTG398000.010.8641398
GCATTCC430900.010.7013533
ATTCCTG431900.010.4359685
TTCCTGC503750.09.0219776
CGCCGTA196400.07.49201266-67
CTGCTGA620850.07.2590799
TCCTGCT631700.07.2094727
GCCGTAT199900.07.0903966-67
CGAGATC511850.07.037421718-19
TATGCCG226850.06.154792362-63
GCTGAAC376150.06.046915510-11
GGTCGCC258150.05.991278662-63
CCGTATC251150.05.895312368-69
ATGCCGT226350.05.79459964-65
CAGCAGG655350.05.46477176
CGTATGC267850.05.44911960-61
CATTCCT971600.05.4226244
GTTCAGC666250.05.36194753