FastQCFastQC Report
Wed 16 Nov 2016
SRR1945736.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945736.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44093790
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG236850.015.272745
CATACAC1144650.014.57175353
TATACAG227400.013.9189985
CTATACT249400.013.81152254
ACACATG1164700.013.6149936
GTGTATG1003200.013.29441
TCATACA1256300.013.1436562
ACATGAC897850.013.1114248
TCTATAC291850.013.0490473
ATCATAC1226550.013.023531
CACATGA1120600.012.8048147
CATGACA918750.012.5788779
GTATATA678300.012.4692751
GTATTAG258600.012.40041351
TATACCG133900.012.3708685
CTAGTAC130650.012.2372333
TATATAC698100.012.2165883
GTATAGA309300.012.120471
TACACAT1454150.012.1024365
TATACTA445400.012.0717935