FastQCFastQC Report
Wed 16 Nov 2016
SRR1945603.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945603.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48356628
Sequences flagged as poor quality0
Sequence length101
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC436900.08.806293594-95
GCCGTCT243600.08.71707694-95
TATGCCG334350.08.63403994-95
TGCCGTC262400.08.49126694-95
ATGCCGT298150.08.18293894-95
GTATGCC386800.08.18254394-95
GGTCGCC275250.07.930709494-95
TCGTATG502800.07.912201494-95
CGCCGTA179300.07.50641994-95
GTCGCCG276550.07.351722794-95
TGGTCGC260200.07.347598694-95
CTCGTAT526550.06.82650392-93
TCGCCGT224200.06.57586394-95
GCCGTAT218000.06.26112194-95
CACAGTG1003450.06.21820194-95
CCGTATC197650.06.099690494-95
GATCTCG1211500.06.074826794-95
TCTCGTA611300.05.99286392-93
CCGTCTT323800.05.970495794-95
GTGGTCG322050.05.89068392-93