FastQCFastQC Report
Wed 16 Nov 2016
SRR1945660.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945660.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69137866
Sequences flagged as poor quality0
Sequence length76
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT5213810.7541178664669806Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT2007020.2902924426391755Illumina Paired End PCR Primer 2 (100% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG1433320.20731331221591365Illumina Paired End PCR Primer 2 (97% over 49bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGC745290.10779765750941747Illumina Paired End PCR Primer 2 (97% over 49bp)
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG705980.10211191650028653Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTTC3275050.057.4176711
TATGCCG1398650.057.02715343
AGCGGTT3327500.056.95255710
GAGCGGT3343750.056.8078739
CGAGACC2948500.056.41790429
CGTATGC1480750.056.25018341
GAGACCG2926800.056.14242630
GTATGCC1468350.055.88550642
AATGCCG3106700.055.8805424
GACCGAT2771950.055.67580832
GTTCAGC3322150.055.3397814
AGACCGA2941500.055.3084731
ATGCCGT1068450.055.2895144
CCGATAT1798950.055.2484834
TGCCGTC985150.055.10798645
CGGTTCA3401100.054.95059212
CAGCAGG3298350.054.9282117
TGCCGAG3132150.054.92671226
TCGTATG1751700.054.7517740
GAATGCC3198700.054.6182323