Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945571.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 109900370 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 36 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 31000 | 0.0 | 6.790746 | 94-95 |
TGCCGTC | 20890 | 0.0 | 6.0735674 | 94-95 |
GTATGCC | 33300 | 0.0 | 6.00563 | 94-95 |
TATGCCG | 27190 | 0.0 | 5.9950504 | 94-95 |
GCCGTCT | 22605 | 0.0 | 5.9777336 | 94-95 |
TGGTCGC | 37040 | 0.0 | 5.867726 | 94-95 |
CGTATGC | 35650 | 0.0 | 5.5459085 | 94-95 |
CGCCGTA | 27420 | 0.0 | 5.3339095 | 90-91 |
ACGGCTA | 82705 | 0.0 | 5.2901993 | 94-95 |
CGGCTAC | 78595 | 0.0 | 5.273659 | 94-95 |
CTCGGTG | 62120 | 0.0 | 5.2526617 | 94-95 |
GTCGCCG | 38005 | 0.0 | 5.2321944 | 94-95 |
ATGCCGT | 24400 | 0.0 | 5.172943 | 92-93 |