FastQCFastQC Report
Wed 16 Nov 2016
SRR1945582.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945582.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82050286
Sequences flagged as poor quality0
Sequence length40-101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC245200.08.05580994-95
CGTATGC261300.06.79909894-95
GTATGCC248400.06.49145494-95
CGCCGTA196150.06.4265392-93
TGGTCGC301250.06.34667994-95
CGGCTAC669550.06.214273594-95
GTCGCCG298650.06.20910394-95
TGCCGTC152750.06.088732294-95
CTCGGTG515950.06.032865594-95
TATGCCG193800.06.002513494-95
ACGGCTA707450.05.69413294-95
CACGGCT732750.05.507279492-93
TCGTATG362700.05.45399594-95
CCGTATC246950.05.421874594-95
GCCGTCT168550.05.384133392-93
GCCGTAT251800.05.35675592-93
TCGGTGG486300.05.32897694-95
AGTCACG875850.05.24368494-95
GTCACGG811650.05.08018894-95
CAGTCAC1045450.05.078824594-95