Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945603.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 48356628 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATGC | 43690 | 0.0 | 8.8062935 | 94-95 |
GCCGTCT | 24360 | 0.0 | 8.717076 | 94-95 |
TATGCCG | 33435 | 0.0 | 8.634039 | 94-95 |
TGCCGTC | 26240 | 0.0 | 8.491266 | 94-95 |
ATGCCGT | 29815 | 0.0 | 8.182938 | 94-95 |
GTATGCC | 38680 | 0.0 | 8.182543 | 94-95 |
GGTCGCC | 27525 | 0.0 | 7.9307094 | 94-95 |
TCGTATG | 50280 | 0.0 | 7.9122014 | 94-95 |
CGCCGTA | 17930 | 0.0 | 7.506419 | 94-95 |
GTCGCCG | 27655 | 0.0 | 7.3517227 | 94-95 |
TGGTCGC | 26020 | 0.0 | 7.3475986 | 94-95 |
CTCGTAT | 52655 | 0.0 | 6.826503 | 92-93 |
TCGCCGT | 22420 | 0.0 | 6.575863 | 94-95 |
GCCGTAT | 21800 | 0.0 | 6.261121 | 94-95 |
CACAGTG | 100345 | 0.0 | 6.218201 | 94-95 |
CCGTATC | 19765 | 0.0 | 6.0996904 | 94-95 |
GATCTCG | 121150 | 0.0 | 6.0748267 | 94-95 |
TCTCGTA | 61130 | 0.0 | 5.992863 | 92-93 |
CCGTCTT | 32380 | 0.0 | 5.9704957 | 94-95 |
GTGGTCG | 32205 | 0.0 | 5.890683 | 92-93 |