Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945614.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 178392794 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 96625 | 0.0 | 11.657662 | 9 |
AGAGCGG | 113590 | 0.0 | 11.265247 | 8 |
TATGCCG | 46220 | 0.0 | 10.284965 | 42-43 |
TGCCGTC | 45530 | 0.0 | 9.893752 | 44-45 |
CGTATGC | 52515 | 0.0 | 9.114746 | 40-41 |
ATGCCGT | 47655 | 0.0 | 8.969346 | 44-45 |
AAGAGCG | 187580 | 0.0 | 8.487888 | 7 |
GTATGCC | 54795 | 0.0 | 8.345239 | 42-43 |
GCCGTCT | 51155 | 0.0 | 8.30972 | 46-47 |
TCGGAAG | 203970 | 0.0 | 8.155279 | 3 |
ATCGGAA | 230390 | 0.0 | 7.497934 | 2 |
CGAGACC | 75365 | 0.0 | 7.4609537 | 28-29 |
GAGACCG | 71940 | 0.0 | 7.4405355 | 30-31 |
CGGAAGA | 227970 | 0.0 | 7.4160676 | 4 |
CGGCATT | 37285 | 0.0 | 7.393683 | 1 |
GATCGGA | 236710 | 0.0 | 7.3180943 | 1 |
AATGCCG | 74705 | 0.0 | 7.1588244 | 24-25 |
TGCCGAG | 77145 | 0.0 | 7.032944 | 26-27 |
ATGCCGA | 82260 | 0.0 | 6.8641095 | 24-25 |
GACCGAT | 74230 | 0.0 | 6.755191 | 32-33 |