Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945568.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 46373122 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 24380 | 0.0 | 16.966034 | 5 |
TATACCG | 14805 | 0.0 | 15.921708 | 5 |
TACCGTG | 11210 | 0.0 | 14.711418 | 7 |
CTATACT | 25830 | 0.0 | 14.695044 | 4 |
TCTATAC | 30355 | 0.0 | 14.58608 | 3 |
CATACAC | 126630 | 0.0 | 14.392937 | 3 |
ATACCGT | 14010 | 0.0 | 13.786419 | 6 |
ACATGAC | 102380 | 0.0 | 13.731287 | 8 |
ACACATG | 127690 | 0.0 | 13.669823 | 6 |
TATACAG | 21810 | 0.0 | 13.54073 | 5 |
CCGTGAG | 10595 | 0.0 | 13.323595 | 9 |
CATGACA | 105240 | 0.0 | 13.22612 | 9 |
GTATAGA | 33275 | 0.0 | 13.165047 | 1 |
CACATGA | 123265 | 0.0 | 13.153492 | 7 |
GTGTATG | 115925 | 0.0 | 13.07748 | 1 |
TCATACA | 137110 | 0.0 | 12.955003 | 2 |
GTATATA | 72055 | 0.0 | 12.780241 | 1 |
GTATTAG | 27710 | 0.0 | 12.756993 | 1 |
TAATACT | 38295 | 0.0 | 12.650145 | 4 |
ATCATAC | 136470 | 0.0 | 12.515342 | 1 |