Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945558.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20510680 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 6920 | 0.0 | 14.337238 | 5 |
TATACTG | 11155 | 0.0 | 14.163117 | 5 |
TCTATAC | 14230 | 0.0 | 13.350561 | 3 |
GTATAGG | 7815 | 0.0 | 13.12709 | 1 |
GTATAGA | 15410 | 0.0 | 12.917508 | 1 |
CTATACT | 11565 | 0.0 | 12.76654 | 4 |
GTACTAG | 9295 | 0.0 | 12.707652 | 1 |
CTAGTAC | 6790 | 0.0 | 12.673728 | 3 |
TAGACTG | 4755 | 0.0 | 12.459746 | 5 |
CCGTGAG | 5270 | 0.0 | 12.04104 | 9 |
TATACAG | 11710 | 0.0 | 11.80537 | 5 |
CATACAC | 43850 | 0.0 | 11.474592 | 3 |
TAGACCG | 5080 | 0.0 | 11.292375 | 5 |
ACATGAC | 35955 | 0.0 | 11.269475 | 8 |
CTATACC | 9790 | 0.0 | 11.238862 | 4 |
GTATTAG | 14075 | 0.0 | 11.200499 | 1 |
ACCGTGA | 6970 | 0.0 | 10.992856 | 8 |
ACACATG | 45095 | 0.0 | 10.92444 | 6 |
CATGACA | 36545 | 0.0 | 10.894225 | 9 |
ACTGTGC | 3635 | 0.0 | 10.86252 | 8 |