Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945579.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 101891064 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 36 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 30390 | 0.0 | 7.8440104 | 94-95 |
TGCCGTC | 22185 | 0.0 | 7.603013 | 94-95 |
TATGCCG | 29525 | 0.0 | 7.500587 | 94-95 |
GTATGCC | 36085 | 0.0 | 7.3692093 | 94-95 |
GCCGTCT | 23230 | 0.0 | 6.9893227 | 94-95 |
CGTATGC | 40385 | 0.0 | 6.9113135 | 94-95 |
GTCGCCG | 35310 | 0.0 | 6.629187 | 94-95 |
TGGTCGC | 37445 | 0.0 | 6.560631 | 92-93 |
CGCCGTA | 24785 | 0.0 | 6.3653035 | 90-91 |
ATGCCGT | 25620 | 0.0 | 6.303723 | 94-95 |
CTCGGTG | 62520 | 0.0 | 5.817925 | 94-95 |
GCCGTAT | 33120 | 0.0 | 5.4405017 | 92-93 |
TCGTATG | 55535 | 0.0 | 5.315161 | 94-95 |
CTCGTAT | 62340 | 0.0 | 5.222722 | 94-95 |
TCGGTGG | 60645 | 0.0 | 5.19841 | 94-95 |
CACTAGC | 113075 | 0.0 | 5.1270504 | 94-95 |
GTGGTCG | 47580 | 0.0 | 5.053299 | 92-93 |