FastQCFastQC Report
Wed 16 Nov 2016
SRR1945550.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945550.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25488816
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT143500.014.581374
TATACCG89900.014.0696355
TATACTG134200.013.9100355
TCTATAC179300.013.7686233
GTATAGG94900.012.495061
TAGACCG58900.011.9747435
CCGTGAG63650.011.9638139
TATACAG145800.011.90033155
TACCGTG68200.011.7177897
AGACCGT59100.011.6130566
ATACCGT96550.011.4905516
ACCGTGA88100.011.418658
CTAGTAC83350.011.2832953
TAATACT250600.011.1641624
CTATACC122750.011.0704834
GTATAGA184900.010.9938761
ATACTGT157500.010.9538466
GACCGTG45900.010.8561127
TACACTG75350.010.7333545
CATACAC524600.010.7025583