Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945738.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33649866 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 17525 | 0.0 | 16.936525 | 5 |
TATACCG | 10345 | 0.0 | 14.583715 | 5 |
TATGAGC | 14520 | 0.0 | 14.436041 | 94 |
CATACAC | 115375 | 0.0 | 14.423657 | 3 |
CTATACT | 17630 | 0.0 | 14.216111 | 4 |
ACATGAC | 86140 | 0.0 | 13.932435 | 8 |
ACACATG | 113430 | 0.0 | 13.8099375 | 6 |
CATGACA | 87930 | 0.0 | 13.50762 | 9 |
CACATGA | 108765 | 0.0 | 13.451704 | 7 |
TCTATAC | 20820 | 0.0 | 13.418643 | 3 |
TCATACA | 123275 | 0.0 | 13.362789 | 2 |
TATACAG | 16380 | 0.0 | 13.1461935 | 5 |
ATCATAC | 121790 | 0.0 | 13.133146 | 1 |
GTGTATG | 99305 | 0.0 | 12.795598 | 1 |
ATACTGT | 16430 | 0.0 | 12.367156 | 6 |
TAGACTG | 9260 | 0.0 | 12.328153 | 5 |
ATACCGT | 9215 | 0.0 | 12.2393055 | 6 |
TACACAT | 140385 | 0.0 | 12.21369 | 5 |
GTATAGA | 22205 | 0.0 | 12.033063 | 1 |
GATTGAG | 97285 | 0.0 | 11.938316 | 7 |