FastQCFastQC Report
Wed 16 Nov 2016
SRR1945586.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945586.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50390542
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT1364670.2708186786321925Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT770180.1528421742318231Illumina Paired End PCR Primer 2 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG454750.043.77108843
CGTATGC476450.042.79673841
GTATGCC475200.042.7079442
GAGACCG668000.042.3901430
ATGCCGT406750.042.19642344
TGCCGTC395000.042.04712345
CGAGACC699400.041.17724229
GCCGTCT384900.041.09710746
GAGCGGT826900.040.607179
TCGTATG535200.040.51445840
GCGGTTC813250.040.43445211
AGCGGTT831700.039.8549610
AATGCCG749200.039.73743424
AGACCGA718250.039.1408131
GACCGAT689200.039.05790732
CCGATAT429300.038.24659334
AGAGCGG899500.038.144788
TGCCGAG772250.038.08214626
TATCGTA376900.037.6179738
ATGCCGA801000.037.04662725