FastQCFastQC Report
Wed 16 Nov 2016
SRR1945681.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945681.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61999164
Sequences flagged as poor quality0
Sequence length76
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA52650.07.179604556
GGTCGCC69650.06.28019953
CGTGTAG86150.06.19418225
GCGTCGT88900.06.15893121
GAGCGTC88650.06.056464719
AGCGTCG88400.06.034382320
GCCGTAT72250.05.329070657
GAGCGGT109450.05.00167319