FastQCFastQC Report
Wed 16 Nov 2016
SRR1945700.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945700.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31457070
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGTC133800.020.5538489
CGCCGTA69350.020.00286946-47
GCCGTAT74200.018.8517246-47
GGTCGCC74250.018.46259742-43
TCGGAAG306150.018.4288773
TATGCCG74100.018.28235846-47
ATGCCGT79600.017.42712246-47
AGAGCGT164550.016.88058
CGTATGC81850.016.8719244-45
GCCGTCT83500.016.83348548-49
TGCCGTC81250.016.81433948-49
CGGAAGA341400.016.3762574
GATCGGA342900.016.1526551
GTATGCC87500.016.02241344-45
ATCGGAA348650.015.9531392
CCGTATC87150.015.86232248-49
AAGAGCG190550.015.1626077
GAGCACA187000.014.8809289
AGAGCAC199050.014.0015458
TGGTCGC87700.013.92736842-43