FastQCFastQC Report
Wed 16 Nov 2016
SRR1945553.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945553.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23929168
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG125900.014.1913975
TATACCG82900.012.9881765
CTATACT138200.012.79225354
TACCGTG64050.012.54967
TCTATAC164900.011.9192093
GTATAGA170800.011.6798881
CATACAC529050.011.5897123
GTATATA354400.011.5235611
CTAGTAC84100.011.4058063
ACATGAC438300.011.3787148
TATACAG138800.011.2464615
ACCGTGA82700.011.1972148
ACACATG526800.011.1893456
GTATTAG179350.011.1493151
CATGACA445400.011.0280579
TAGGGTG55200.010.9028025
ATACCGT93500.010.859136
CACATGA516300.010.8160137
GTATAAT215350.010.6837721
GTACTAG100100.010.6227021