Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945580.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 42436654 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 21760 | 0.0 | 16.350334 | 5 |
TATACCG | 13780 | 0.0 | 15.120589 | 5 |
CTATACT | 23090 | 0.0 | 14.98157 | 4 |
CATACAC | 134585 | 0.0 | 14.749288 | 3 |
ACATGAC | 107460 | 0.0 | 14.586128 | 8 |
TAGGCTG | 11580 | 0.0 | 14.317203 | 5 |
ACACATG | 134545 | 0.0 | 14.087693 | 6 |
CATGACA | 109940 | 0.0 | 14.069495 | 9 |
TCTATAC | 27045 | 0.0 | 14.016751 | 3 |
TATACAG | 21370 | 0.0 | 13.922864 | 5 |
CACATGA | 131145 | 0.0 | 13.889155 | 7 |
TCATACA | 146780 | 0.0 | 13.429547 | 2 |
GTCGCGC | 1870 | 0.0 | 13.418793 | 8 |
ATCATAC | 144090 | 0.0 | 13.339495 | 1 |
GTGTATG | 121885 | 0.0 | 13.137731 | 1 |
GTATATA | 65500 | 0.0 | 12.951079 | 1 |
CTAGGCT | 10905 | 0.0 | 12.655783 | 4 |
TACACAT | 165840 | 0.0 | 12.399203 | 5 |
ATACTGT | 21345 | 0.0 | 12.301796 | 6 |
GTATAGG | 15315 | 0.0 | 12.182263 | 1 |