Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945583.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 49879918 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 25525 | 0.0 | 17.028086 | 5 |
TATACCG | 17310 | 0.0 | 16.075125 | 5 |
CCGTGAG | 13715 | 0.0 | 15.126637 | 9 |
CTATACT | 27955 | 0.0 | 15.051005 | 4 |
CATACAC | 135700 | 0.0 | 14.86569 | 3 |
GACCGTG | 8235 | 0.0 | 14.745734 | 7 |
TACCGTG | 13150 | 0.0 | 14.413695 | 7 |
ACCGTGA | 16960 | 0.0 | 14.319708 | 8 |
TCTATAC | 33995 | 0.0 | 14.182625 | 3 |
ACATGAC | 122395 | 0.0 | 13.959306 | 8 |
TATACAG | 25175 | 0.0 | 13.936449 | 5 |
ACACATG | 139620 | 0.0 | 13.905984 | 6 |
GTCGCGC | 2070 | 0.0 | 13.853846 | 8 |
CTAGTAC | 17830 | 0.0 | 13.646079 | 3 |
CACATGA | 137665 | 0.0 | 13.335311 | 7 |
CATGACA | 126880 | 0.0 | 13.32803 | 9 |
GTGTATG | 120985 | 0.0 | 13.264506 | 1 |
GTATAGA | 35085 | 0.0 | 13.249067 | 1 |
TCATACA | 150935 | 0.0 | 13.177586 | 2 |
ATACCGT | 15795 | 0.0 | 13.021284 | 6 |