FastQCFastQC Report
Wed 16 Nov 2016
SRR1945721.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945721.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39583140
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGGGT45750.019.75035339
TCGGGGG69500.018.05337338
GGGGGTC58850.017.86860740
CGGCATT64650.017.7906841
GGGTCGC61200.015.92221142
CTCGGGG59700.015.82857637
CGGCGCG23100.014.81911412
TATGCCG56500.014.75527963
GCGGCGC28750.014.53682411
GGTCGCC66450.014.1430643
GCCGTAT61450.013.93106467
CGCCGTA64600.013.85404146
AATGCCG144800.013.63231624
GAGACCG115450.013.39987761
CGAGACC112850.013.3941960
TGCCGTC64050.013.38354665
ATGCCGT64950.013.10759164
GGGCGCC27850.012.77854643
GAGCGGT160600.012.7640389
TGGTCGC70750.012.36364862