Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945695.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 65129182 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 17930 | 0.0 | 36.57732 | 1 |
CGCCGTA | 18010 | 0.0 | 25.815874 | 56 |
CCGAGAT | 51090 | 0.0 | 25.454563 | 17 |
TATGCCG | 20005 | 0.0 | 25.2332 | 63 |
CCTGCTG | 23700 | 0.0 | 24.645063 | 8 |
GCCGTAT | 19100 | 0.0 | 24.344296 | 57 |
GCTGAAC | 23520 | 0.0 | 24.274286 | 11 |
GGTCGCC | 20440 | 0.0 | 23.962246 | 53 |
GGCATTC | 26115 | 0.0 | 23.249882 | 2 |
ATTCCTG | 26120 | 0.0 | 23.129509 | 5 |
CGAGATC | 56745 | 0.0 | 22.898245 | 18 |
TGGTCGC | 21615 | 0.0 | 22.432592 | 52 |
CGTATGC | 23625 | 0.0 | 22.301329 | 61 |
CCGTATC | 20685 | 0.0 | 22.123125 | 58 |
ATGCCGT | 19480 | 0.0 | 22.108078 | 64 |
TGCCGTC | 19685 | 0.0 | 21.860056 | 65 |
GCATTCC | 28495 | 0.0 | 21.737654 | 3 |
AACCGAG | 24560 | 0.0 | 21.693405 | 15 |
TTCCTGC | 28475 | 0.0 | 21.325487 | 6 |
GTATGCC | 24195 | 0.0 | 21.252378 | 62 |