Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945759.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 42360782 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 226079 | 0.5336988349270795 | No Hit |
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC | 140231 | 0.3310396866611197 | No Hit |
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 54426 | 0.12848204738052288 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 11575 | 0.0 | 36.424004 | 1 |
TATGCCG | 9875 | 0.0 | 35.08586 | 63 |
ATGCCGT | 10495 | 0.0 | 31.6435 | 64 |
CGTATGC | 11205 | 0.0 | 31.639145 | 61 |
CGCCGTA | 8235 | 0.0 | 31.34519 | 66 |
GCCGTAT | 8330 | 0.0 | 31.285933 | 67 |
GTATGCC | 11225 | 0.0 | 31.115 | 62 |
TGCCGTC | 10360 | 0.0 | 30.938572 | 65 |
GGTCGCC | 9260 | 0.0 | 29.198174 | 63 |
GCCGTCT | 10920 | 0.0 | 29.00159 | 66 |
CCGAGAT | 29745 | 0.0 | 27.24424 | 17 |
CGAGATC | 31915 | 0.0 | 25.403423 | 18 |
CCGTATC | 9740 | 0.0 | 24.887852 | 68 |
TCGTATG | 15350 | 0.0 | 24.398016 | 60 |
CCTGCTG | 15400 | 0.0 | 24.069971 | 8 |
GGCATTC | 17465 | 0.0 | 23.77093 | 2 |
GCATTCC | 18315 | 0.0 | 23.636847 | 3 |
GCTGAAC | 15425 | 0.0 | 23.23804 | 11 |
AACCGAG | 15860 | 0.0 | 23.170277 | 15 |
TGGTCGC | 10925 | 0.0 | 22.757345 | 62 |