FastQCFastQC Report
Wed 16 Nov 2016
SRR1945715.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945715.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39722076
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGGGT45250.024.61758639
TCGGGGG71250.022.73203538
GGGGGTC62100.021.3340740
GGGCGCC28800.021.02793943
GGGTCGC61450.020.64325542
GGGGGGC39600.020.553940
CGGCATT72750.019.5873261
GCGGCGC30800.019.3728511
CGAGACC137800.018.93817360
CCGCGGG40050.018.8114417
CTCGGGG68400.018.70142637
GAGACCG138350.018.6859461
GGTCGCC70550.017.06828343
GACCGAT151800.016.47494163
GGCGCCG38150.016.14424144
GGGGGCG48300.016.1216641
TCCTGCG59400.016.1163567
CCGATAT113700.015.85885465
AGACCGA165700.015.75055662
CGCCGTA64950.015.68704546