Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945662.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 67405676 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 199275 | 0.0 | 59.426426 | 9 |
GCGGTTC | 194325 | 0.0 | 59.30565 | 11 |
AGCGGTT | 197710 | 0.0 | 58.75598 | 10 |
AGAGCGG | 208515 | 0.0 | 57.235897 | 8 |
GTTCAGC | 200385 | 0.0 | 55.69644 | 14 |
GAGACCG | 172505 | 0.0 | 55.481693 | 30 |
CGGTTCA | 206430 | 0.0 | 55.470985 | 12 |
CGAGACC | 173810 | 0.0 | 55.30289 | 29 |
AATGCCG | 180565 | 0.0 | 55.281994 | 24 |
GGTTCAG | 207945 | 0.0 | 54.509357 | 13 |
CAGCAGG | 202025 | 0.0 | 54.357845 | 17 |
AGACCGA | 175555 | 0.0 | 53.82455 | 31 |
GACCGAT | 158430 | 0.0 | 53.762447 | 32 |
TGCCGAG | 181835 | 0.0 | 53.60016 | 26 |
GAATGCC | 190355 | 0.0 | 53.267437 | 23 |
ATGCCGA | 184610 | 0.0 | 53.11596 | 25 |
CAGGAAT | 198930 | 0.0 | 52.963436 | 20 |
GCAGGAA | 202140 | 0.0 | 52.957943 | 19 |
TATGCCG | 55165 | 0.0 | 52.903587 | 43 |
CCGATAT | 105275 | 0.0 | 52.600605 | 34 |