FastQCFastQC Report
Wed 16 Nov 2016
SRR1945504.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945504.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37427078
Sequences flagged as poor quality0
Sequence length40-101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC40500.06.651458344-45
TCGGAAG196200.06.0024614
AGAGCGT107800.05.1822999
TGCCGTC49300.05.09656948-49
GCACACG65350.05.02201512-13