Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945734.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41888620 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 22850 | 0.0 | 16.239815 | 5 |
CATACAC | 143355 | 0.0 | 15.436552 | 3 |
ACACATG | 134985 | 0.0 | 15.05412 | 6 |
ACATGAC | 106620 | 0.0 | 15.0457735 | 8 |
CTATACT | 22830 | 0.0 | 14.872928 | 4 |
CACATGA | 131955 | 0.0 | 14.575719 | 7 |
CATGACA | 108185 | 0.0 | 14.476011 | 9 |
TATACCG | 12320 | 0.0 | 14.424227 | 5 |
ATCATAC | 147820 | 0.0 | 14.271595 | 1 |
TCATACA | 154370 | 0.0 | 14.20836 | 2 |
TATACAG | 21165 | 0.0 | 14.16998 | 5 |
TCTATAC | 26250 | 0.0 | 13.585379 | 3 |
GTGTATG | 126475 | 0.0 | 13.386372 | 1 |
TACACAT | 171270 | 0.0 | 13.376167 | 5 |
TACCGTG | 8455 | 0.0 | 12.9141445 | 7 |
TATGAGC | 17855 | 0.0 | 12.887202 | 94 |
GTATAGG | 15350 | 0.0 | 12.654935 | 1 |
GTATATA | 62310 | 0.0 | 12.566155 | 1 |
ATACACA | 189350 | 0.0 | 12.448272 | 4 |
GATTGAG | 124085 | 0.0 | 12.445577 | 7 |