Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945560.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40275086 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 21270 | 0.0 | 15.968931 | 5 |
GTCGCGC | 1505 | 0.0 | 15.780196 | 8 |
TATACCG | 13755 | 0.0 | 15.767357 | 5 |
CTATACT | 21365 | 0.0 | 15.058984 | 4 |
TCTATAC | 25955 | 0.0 | 14.985555 | 3 |
TACCGTG | 10095 | 0.0 | 14.78128 | 7 |
ATACCGT | 12005 | 0.0 | 14.3331995 | 6 |
GTATAGA | 28275 | 0.0 | 14.226201 | 1 |
CCGTGAG | 10420 | 0.0 | 13.933183 | 9 |
ACCGTGA | 13120 | 0.0 | 13.8322935 | 8 |
CATACAC | 124945 | 0.0 | 13.803943 | 3 |
GAGCGCG | 1960 | 0.0 | 13.71732 | 7 |
CTAGTAC | 13710 | 0.0 | 13.596591 | 3 |
ACATGAC | 93710 | 0.0 | 13.42238 | 8 |
TATACAG | 19650 | 0.0 | 13.408769 | 5 |
GTATTAG | 22960 | 0.0 | 13.368544 | 1 |
ACACATG | 123285 | 0.0 | 13.310127 | 6 |
CATGACA | 96430 | 0.0 | 12.974071 | 9 |
GTGTATG | 113040 | 0.0 | 12.891916 | 1 |
GTATAGG | 14010 | 0.0 | 12.8706 | 1 |