FastQCFastQC Report
Wed 16 Nov 2016
SRR1945601.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945601.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47217592
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG242900.014.651925
TATACCG152400.014.6284855
CATACAC1429200.014.1137533
TATACAG235900.013.92915
CTATACT252600.013.8159314
ACATGAC1064050.013.45367058
ACACATG1405400.013.4318426
TCTATAC289450.013.1432383
CACATGA1374250.012.8016597
CATGACA1108700.012.7657159
TCATACA1556600.012.7592092
GTGTATG1232150.012.72250651
ATCATAC1527050.012.5240551
TAGGCTG127350.012.1979115
GTATATA723650.012.1561381
CTAGTAC156650.012.0710273
GTATAGA297850.011.9958951
TACACAT1760450.011.9186275
GATTGAG1215400.011.8751587
ACTGTGC79800.011.6713388