Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945675.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 49196128 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC | 61721 | 0.12545906051793346 | TruSeq Adapter, Index 4 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 40890 | 0.0 | 25.375391 | 3 |
TATGCCG | 13135 | 0.0 | 23.20434 | 46-47 |
GAGCACA | 27335 | 0.0 | 22.691889 | 9 |
ATCGGAA | 47730 | 0.0 | 22.260397 | 2 |
GATCGGA | 48370 | 0.0 | 22.211967 | 1 |
CGGAAGA | 48040 | 0.0 | 21.988647 | 4 |
CGTATGC | 14180 | 0.0 | 21.644012 | 44-45 |
ATGCCGT | 14405 | 0.0 | 21.517452 | 46-47 |
GAGCGTC | 16670 | 0.0 | 21.226341 | 9 |
GCCGTCT | 14825 | 0.0 | 21.072 | 48-49 |
GTATGCC | 15060 | 0.0 | 20.535332 | 44-45 |
TGCCGTC | 15215 | 0.0 | 20.238337 | 48-49 |
AGAGCAC | 32125 | 0.0 | 19.322962 | 8 |
CGCCGTA | 9725 | 0.0 | 17.567265 | 46-47 |
GCACACG | 18020 | 0.0 | 17.380562 | 10-11 |
AGAGCGT | 21360 | 0.0 | 17.09361 | 8 |
GAAGAGC | 61305 | 0.0 | 17.053905 | 6 |
AAGAGCG | 25950 | 0.0 | 16.22467 | 7 |
GGTCGCC | 10735 | 0.0 | 16.071175 | 42-43 |
GCCGTAT | 11020 | 0.0 | 15.886711 | 46-47 |