FastQCFastQC Report
Wed 16 Nov 2016
SRR1945752.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945752.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34992890
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3398410.9711715722822551No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA85250.026.10246356
GCCGTAT87000.025.5567757
GGTCGCC101300.024.52811453
CCGTATC98000.022.689158
TGGTCGC113800.021.27770252
TATGCCG92600.019.3664653
CGTATCA115000.018.982859
TGCCGTC95450.018.9366455
ATGCCGT94800.018.65888454
CGTATGC102850.018.41511551
GGCTGAT123850.017.9820772
GTATGCC104850.017.73884452
ATCAGCC124650.017.5866262
GGTGGTC147450.016.80173550
GCCGTCT105100.016.63080256
CGAGATC197800.016.56372318
CTCGGTG161350.016.1312947
TCGGTGG165900.015.73182348
GTCGCCG161000.015.39013154
CGGCATT62300.015.2060631