FastQCFastQC Report
Wed 16 Nov 2016
SRR1945633.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945633.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82648878
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC167300.026.3471853
CGCCGTA157200.025.61428856
GCCGTAT163500.024.6843657
TGGTCGC196300.022.33891152
CGTGTAG228100.021.51480925
CCGTATC189100.021.21457958
GAGCGTC238600.020.64487319
AGCGTCG243700.020.18342420
GCGTCGT246700.020.00761221
TATGCCG149450.019.82654453
CGTATGC164850.019.2339851
GTCGTGT257100.019.05833223
GTATGCC170500.018.16561552
CGTCGTG275350.018.03872122
CTCGGTG263950.017.93503247
TCGGTGG268800.017.67717448
CGTATCA233000.017.39951359
GTCGCCG262200.017.21269454
TCGTGTA297650.016.75711624
AGAGCGT299550.016.51565718