Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945584.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 48064556 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 14835 | 0.0 | 15.072226 | 5 |
CATACAC | 145995 | 0.0 | 14.879491 | 3 |
ACATGAC | 111045 | 0.0 | 14.413788 | 8 |
TCTATAC | 31415 | 0.0 | 14.363355 | 3 |
ACACATG | 139100 | 0.0 | 14.260939 | 6 |
TATACTG | 25055 | 0.0 | 14.146416 | 5 |
CATGACA | 114845 | 0.0 | 13.850927 | 9 |
CACATGA | 137000 | 0.0 | 13.805766 | 7 |
CTATACT | 27025 | 0.0 | 13.778399 | 4 |
TCATACA | 159075 | 0.0 | 13.511352 | 2 |
CTAGTAC | 15780 | 0.0 | 13.4596815 | 3 |
TACCGTG | 11160 | 0.0 | 13.450744 | 7 |
ATCATAC | 158290 | 0.0 | 13.193805 | 1 |
GTGTATG | 132315 | 0.0 | 13.0856285 | 1 |
TATACAG | 23305 | 0.0 | 12.997562 | 5 |
ATACCGT | 14160 | 0.0 | 12.816147 | 6 |
GAGCGCG | 2805 | 0.0 | 12.779764 | 7 |
GTATAGA | 32575 | 0.0 | 12.649341 | 1 |
CCGTGAG | 10965 | 0.0 | 12.463894 | 9 |
TACACAT | 179830 | 0.0 | 12.396392 | 5 |