Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945727.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23874828 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 4785 | 0.0 | 21.18974 | 1 |
TATGCCG | 3665 | 0.0 | 19.501297 | 63 |
GGTCGCC | 3725 | 0.0 | 19.093124 | 63 |
CGCCGTA | 3840 | 0.0 | 18.341702 | 66 |
CGTATGC | 4115 | 0.0 | 17.711357 | 61 |
GCCGTAT | 4160 | 0.0 | 17.099447 | 67 |
ATGCCGT | 4230 | 0.0 | 16.23892 | 64 |
GCTGAAC | 7290 | 0.0 | 15.978826 | 11 |
GTATGCC | 4585 | 0.0 | 15.81941 | 62 |
TGCCGTC | 4235 | 0.0 | 15.637547 | 65 |
TGGTCGC | 4515 | 0.0 | 15.521422 | 62 |
GCCGTCT | 4455 | 0.0 | 15.180441 | 66 |
CCTGCTG | 7915 | 0.0 | 14.930753 | 8 |
GGCATTC | 8010 | 0.0 | 14.837113 | 2 |
ATTCCTG | 8345 | 0.0 | 14.371101 | 5 |
CGAGATC | 10940 | 0.0 | 14.073199 | 18 |
CCGTATC | 5075 | 0.0 | 13.9476795 | 68 |
CCGAGAT | 11755 | 0.0 | 13.393963 | 17 |
GCATTCC | 9105 | 0.0 | 13.1299715 | 3 |
TTCCTGC | 9675 | 0.0 | 12.431443 | 6 |