FastQCFastQC Report
Wed 16 Nov 2016
SRR1945677.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945677.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61135848
Sequences flagged as poor quality0
Sequence length76
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC88500.07.4404553
CGCCGTA77600.07.26834256
GCCGTAT85000.07.130415457
TGGTCGC107100.06.049971652
CCGTATC102200.05.93048758
AATGCCG130250.05.913647734
CGAGACC144650.05.20424939
GAGACCG137400.05.17302440
CTCGGTG149300.05.158567447
CGTGTAG138000.05.145623725
GACCGAT137750.05.10865742
TCGGTGG157350.05.00627748