FastQCFastQC Report
Wed 16 Nov 2016
SRR1945766.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945766.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53358652
Sequences flagged as poor quality0
Sequence length101
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC82550.07.86265148-49
TATGCCG104750.06.379031746-47
GCCGTCT93050.06.331921648-49
ATGCCGT93900.06.32543946-47
TCGGAAG227750.06.28338773
GAGCACA221100.06.07863579
AGAGCAC240300.05.80767548
GCACACG115600.05.67054110-11
CGTATGC119500.05.6509244-45
GTATGCC111650.05.576382644-45