Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945650.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 58251282 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 591300 | 1.015084955555141 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 112545 | 0.19320604823770232 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG | 79518 | 0.13650858362224544 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 238180 | 0.0 | 60.81149 | 9 |
GCGGTTC | 235080 | 0.0 | 60.416252 | 11 |
AGCGGTT | 237185 | 0.0 | 60.272064 | 10 |
AGAGCGG | 246100 | 0.0 | 59.25778 | 8 |
CGGTTCA | 244180 | 0.0 | 57.79713 | 12 |
GTTCAGC | 240060 | 0.0 | 57.738075 | 14 |
CAGCAGG | 237900 | 0.0 | 57.411533 | 17 |
GGTTCAG | 246810 | 0.0 | 56.95667 | 13 |
AATGCCG | 226540 | 0.0 | 56.84228 | 24 |
TATGCCG | 116410 | 0.0 | 56.509293 | 43 |
GAGACCG | 219205 | 0.0 | 56.215534 | 30 |
CGAGACC | 221570 | 0.0 | 56.130108 | 29 |
TGCCGTC | 96775 | 0.0 | 55.932884 | 45 |
TGCCGAG | 227305 | 0.0 | 55.894333 | 26 |
GACCGAT | 203055 | 0.0 | 55.875584 | 32 |
CGTATGC | 121570 | 0.0 | 55.784508 | 41 |
CAGGAAT | 238165 | 0.0 | 55.774178 | 20 |
GAATGCC | 233000 | 0.0 | 55.75717 | 23 |
GGAATGC | 236785 | 0.0 | 55.710052 | 22 |
ATGCCGA | 229770 | 0.0 | 55.66532 | 25 |