FastQCFastQC Report
Wed 16 Nov 2016
SRR1945685.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945685.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61638336
Sequences flagged as poor quality0
Sequence length76
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA60400.08.34664556
GGTCGCC74100.07.27411353
GCCGTAT73750.07.168424657
GCGTCGT106750.06.22087821
CGTGTAG102150.06.160393725
CCGTATC85800.05.95769558
TGGTCGC98650.05.92500652
AATGCCG113300.05.890779513
GAGCGTC113150.05.86803119
AGCGTCG111200.05.814243320
GTCGTGT122150.05.63724623
CGTCGTG132450.05.33059422
GAGACCG127100.05.065490240