FastQCFastQC Report
Wed 16 Nov 2016
SRR1945632.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945632.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50643166
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT4697810.9276296035678339Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT2256010.4454717542738146Illumina Paired End PCR Primer 2 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT1258050.055.647759
AGAGCGG1380200.055.042338
GCGGTTC1257550.054.6053911
AGCGGTT1271100.054.33881810
TATGCCG1061150.052.90367543
CGTATGC1078450.052.47029541
GTATGCC1081300.052.1544342
ATGCCGT1046900.052.10854744
TGCCGTC1041150.051.89148345
GCCGTCT1027050.051.84584446
GAGACCG1173400.051.71823530
CGAGACC1190400.051.4104129
AATGCCG1232000.051.17449624
GAGGGGC204250.051.0870829
GTTCAGC1316200.050.97587214
TCGTATG1124450.050.61911840
CAGCAGG1319850.050.0271817
CCGATAT766350.049.95729434
AGACCGA1209350.049.94153631
GGTTCAG1368350.049.687713