Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945702.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 54899278 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 170498 | 0.3105651043352519 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 23275 | 0.0 | 43.390972 | 1 |
CCGAGAT | 57120 | 0.0 | 36.152405 | 17 |
CCTGCTG | 26565 | 0.0 | 33.322838 | 8 |
GGCATTC | 28135 | 0.0 | 33.02214 | 2 |
GCATTCC | 28710 | 0.0 | 32.82523 | 3 |
GCTGAAC | 26475 | 0.0 | 32.099827 | 11 |
CGAGATC | 64595 | 0.0 | 32.01269 | 18 |
ATTCCTG | 29035 | 0.0 | 31.726921 | 5 |
AACCGAG | 25695 | 0.0 | 30.561872 | 15 |
TGAACCG | 28855 | 0.0 | 29.104572 | 13 |
TTCCTGC | 31960 | 0.0 | 28.985691 | 6 |
GGCTGAT | 23430 | 0.0 | 28.795347 | 2 |
GAACCGA | 26365 | 0.0 | 28.776218 | 14 |
GGGCGCC | 9410 | 0.0 | 28.683916 | 63 |
CGCCGTA | 25580 | 0.0 | 28.681362 | 56 |
ATCAGCC | 22875 | 0.0 | 28.071304 | 2 |
GGTCGCC | 27445 | 0.0 | 28.057192 | 53 |
TATGCCG | 31730 | 0.0 | 28.002396 | 63 |
GCCGTAT | 26350 | 0.0 | 27.933567 | 57 |
TGGTCGC | 27775 | 0.0 | 27.35967 | 52 |