Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945470.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 102414212 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 48060 | 0.0 | 7.1549788 | 4 |
GGTCGCC | 10600 | 0.0 | 6.520575 | 44-45 |
AGAGCGT | 26400 | 0.0 | 6.2575235 | 9 |
GATCGGA | 62725 | 0.0 | 5.7446175 | 2 |
GCACACG | 16260 | 0.0 | 5.6936183 | 12-13 |
TATGCCG | 14195 | 0.0 | 5.6822352 | 46-47 |
GCCGTCT | 15170 | 0.0 | 5.578878 | 50-51 |
TGCCGTC | 14090 | 0.0 | 5.4829583 | 48-49 |
CGCCGTA | 12800 | 0.0 | 5.4613085 | 46-47 |
CGGAAGA | 64630 | 0.0 | 5.4423466 | 5 |
ATGCCGT | 15415 | 0.0 | 5.376154 | 48-49 |
GAGCGTC | 15545 | 0.0 | 5.3584085 | 10-11 |
ATCGGAA | 70340 | 0.0 | 5.1437383 | 3 |
AAGAGCG | 34725 | 0.0 | 5.1314726 | 8 |
GTATGCC | 18080 | 0.0 | 5.0172853 | 46-47 |