FastQCFastQC Report
Wed 16 Nov 2016
SRR1945518.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945518.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35731254
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG187600.012.8764125
TAGACTG85350.011.8385785
CTATACT198000.011.72534754
GTATTAG264700.011.4600171
GTATAGA248450.011.111651
TCTATAC238550.011.0726423
TATACCG121650.010.8943575
ACTGTGC61850.010.562058
TATACAG213500.010.4778865
TAATACT366100.010.475014
CATACAC670050.010.1637873
GTATAGG137300.010.1391311
CCGTGCG26750.010.0144669
TAGACAG104300.010.003075
ATACCGT132050.09.8940216
GTATAAT340750.09.7994571
TACACTG113800.09.7048815
ATAATAC378700.09.692823
GTACTAG125250.09.6877171
ATACTGT229400.09.6697456