FastQCFastQC Report
Wed 16 Nov 2016
SRR1945758.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945758.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73702972
Sequences flagged as poor quality0
Sequence length101
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC112900.08.36485248-49
GCCGTCT124300.07.50101948-49
GAGCACA301900.07.07831869
TATGCCG143350.06.96218446-47
ATGCCGT134050.06.84105546-47
TCGGAAG345450.06.80696443
GCACACG156950.06.38997310-11
AGAGCAC336300.06.1436038
GTATGCC162100.06.124672444-45
CGTATGC170650.05.929961744-45
CACAGTG192600.05.13350832-33
GATCGGA424400.05.09564921
CACACGT204600.05.093762412-13
CGGAAGA507700.05.04053164