Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945620.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28875922 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 206872 | 0.7164169511193443 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 83951 | 0.29073011071300164 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 83405 | 0.0 | 55.22198 | 9 |
TATGCCG | 55935 | 0.0 | 54.76148 | 43 |
GCGGTTC | 82755 | 0.0 | 54.45307 | 11 |
AGAGCGG | 88430 | 0.0 | 54.4456 | 8 |
AGCGGTT | 82885 | 0.0 | 54.379616 | 10 |
TGCCGTC | 51910 | 0.0 | 53.821083 | 45 |
GTATGCC | 57260 | 0.0 | 53.667355 | 42 |
ATGCCGT | 52960 | 0.0 | 53.311966 | 44 |
GCCGTCT | 50885 | 0.0 | 53.243816 | 46 |
CGAGACC | 75630 | 0.0 | 52.902958 | 29 |
GAGACCG | 75125 | 0.0 | 52.75325 | 30 |
CGTATGC | 58375 | 0.0 | 52.701363 | 41 |
AATGCCG | 76990 | 0.0 | 51.810272 | 24 |
CAGCAGG | 85075 | 0.0 | 51.745857 | 17 |
GACCGAT | 73925 | 0.0 | 51.682777 | 32 |
AGACCGA | 76375 | 0.0 | 51.563366 | 31 |
GTTCAGC | 86380 | 0.0 | 51.23058 | 14 |
CGGTTCA | 88160 | 0.0 | 51.121223 | 12 |
CAGGAAT | 83935 | 0.0 | 50.820404 | 20 |
GGTTCAG | 88355 | 0.0 | 50.578644 | 13 |