Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945699.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 61436288 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 198443 | 0.32300616860185305 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
TGGCTGATGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAT | 63314 | 0.10305635652987369 | Illumina Paired End PCR Primer 2 (97% over 41bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 24740 | 0.0 | 37.269024 | 56 |
GCCGTAT | 25385 | 0.0 | 36.472446 | 57 |
GGTCGCC | 29215 | 0.0 | 34.81897 | 53 |
TGGTCGC | 29395 | 0.0 | 34.02404 | 52 |
CCGTATC | 26935 | 0.0 | 33.95612 | 58 |
ATCAGCC | 28020 | 0.0 | 31.261387 | 2 |
CCGGCAT | 11150 | 0.0 | 30.941347 | 1 |
GGCTGAT | 27060 | 0.0 | 30.883184 | 2 |
CGTATCA | 29255 | 0.0 | 30.49358 | 59 |
CGAGATC | 62515 | 0.0 | 29.757599 | 18 |
CCGAGAT | 63480 | 0.0 | 29.171719 | 17 |
CTCGGTG | 37855 | 0.0 | 28.554962 | 47 |
TCGGTGG | 37995 | 0.0 | 28.477926 | 48 |
TCGCCGT | 32390 | 0.0 | 28.312708 | 55 |
GTCGCCG | 37195 | 0.0 | 27.385588 | 54 |
GGTGGTC | 37130 | 0.0 | 27.313114 | 50 |
CAGCCAA | 42080 | 0.0 | 26.853144 | 4 |
TATGCCG | 29950 | 0.0 | 26.709618 | 63 |
CGGTGGT | 40040 | 0.0 | 25.511232 | 49 |
GAGTGTA | 41745 | 0.0 | 25.477034 | 37 |