Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945732.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39525214 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 20300 | 0.0 | 16.341063 | 5 |
CATACAC | 115225 | 0.0 | 15.475862 | 3 |
CTATACT | 22070 | 0.0 | 14.836663 | 4 |
ACACATG | 115365 | 0.0 | 14.648274 | 6 |
GACCGTG | 5960 | 0.0 | 14.567466 | 7 |
ACATGAC | 85380 | 0.0 | 14.306776 | 8 |
TCATACA | 125730 | 0.0 | 14.002149 | 2 |
CACATGA | 110675 | 0.0 | 13.999292 | 7 |
TCTATAC | 25305 | 0.0 | 13.862953 | 3 |
CATGACA | 87640 | 0.0 | 13.72091 | 9 |
ATCATAC | 123095 | 0.0 | 13.661305 | 1 |
TATACAG | 19825 | 0.0 | 13.5486555 | 5 |
GTGTATG | 99350 | 0.0 | 13.38098 | 1 |
TATACCG | 12080 | 0.0 | 13.378223 | 5 |
TAGACCG | 9410 | 0.0 | 13.225537 | 5 |
TACACAT | 145220 | 0.0 | 12.848706 | 5 |
TATGAGC | 16895 | 0.0 | 12.670064 | 94 |
GTATAGA | 26535 | 0.0 | 12.63328 | 1 |
GCGCGCC | 2195 | 0.0 | 12.46011 | 9 |
CCGTGAG | 8745 | 0.0 | 12.407437 | 9 |