Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945557.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31007444 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 11200 | 0.0 | 14.022033 | 5 |
CTAGTAC | 11745 | 0.0 | 13.252232 | 3 |
TATACTG | 15865 | 0.0 | 13.099801 | 5 |
CCGTGAG | 10250 | 0.0 | 12.381917 | 9 |
GTATAGG | 11085 | 0.0 | 12.267851 | 1 |
CATACAC | 102295 | 0.0 | 12.241391 | 3 |
ACATGAC | 77980 | 0.0 | 12.104398 | 8 |
TCTATAC | 20540 | 0.0 | 12.019126 | 3 |
ACACATG | 99800 | 0.0 | 11.982629 | 6 |
CATGACA | 78920 | 0.0 | 11.840698 | 9 |
ATACCGT | 11205 | 0.0 | 11.788539 | 6 |
TACCGTG | 9190 | 0.0 | 11.764619 | 7 |
CTATACT | 16230 | 0.0 | 11.76224 | 4 |
CACATGA | 96725 | 0.0 | 11.658885 | 7 |
ACCGTGA | 12180 | 0.0 | 11.578083 | 8 |
GTACTAC | 14075 | 0.0 | 11.422028 | 6 |
TCATACA | 110535 | 0.0 | 11.261117 | 2 |
GTACTAG | 15785 | 0.0 | 11.238364 | 1 |
TAGTACT | 25235 | 0.0 | 11.235606 | 4 |
TAGACCG | 8080 | 0.0 | 11.173066 | 5 |