FastQCFastQC Report
Wed 16 Nov 2016
SRR1945546.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945546.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20573114
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC10700.015.8150718
TATACTG105950.014.2009565
CTATACT111300.013.8562994
TCTATAC139000.012.8546923
TATACCG76700.012.4442655
GTATAGA146500.011.9476461
CATACAC440550.011.6338693
GTATATA299850.011.5491711
GTATTAG147550.011.5437371
TATACAG119300.011.4294715
TACCGTG55700.011.3086427
GTATAGG82000.011.3039291
ATACCGT75350.011.042086
ACACATG432900.010.92373856
CCGTGAG42350.010.8770039
TAATACT190200.010.8523214
TAGTACT109700.010.8438244
ACATGAC363850.010.8390698
TATACTA184300.010.7405215
TAGACTG49550.010.722685