FastQCFastQC Report
Wed 16 Nov 2016
SRR1945646.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945646.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54555770
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCACA281900.017.5676869
AGAGCAC286500.017.4496218
TATGCCG119850.015.37410446-47
TCGGAAG354600.014.6882623
CGTATGC132250.014.30371244-45
TGCCGTC111700.014.20360348-49
GCACACG181400.014.04058610-11
ATGCCGT124350.013.68373246-47
GTATGCC142650.013.35972944-45
ACGTCTG185600.013.30834914-15
GATCGGA399650.013.0568291
GCCGTCT119000.012.68048848-49
ATCGGAA427950.012.3911042
CGGAAGA428550.012.1530494
ACACGTC214600.011.706058512-13
CACACGT218950.011.51641812-13
CGTCTGA219200.011.41883116-17
CACAGTG215950.011.08707732-33
CACGTCT227550.011.009809514-15
CCAGTCA236200.010.63416226-27