FastQCFastQC Report
Wed 16 Nov 2016
SRR1945693.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945693.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74470902
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA110150.017.84990556
GCCGTAT112300.017.1660257
GGTCGCC125700.016.92376153
TATGCCG103650.015.83957253
TGGTCGC147450.014.49788252
CGTATGC116150.014.28669951
CCGTATC144600.013.47681658
GTATGCC126800.013.16759952
ATGCCGT111800.012.68198554
CGTGTAG190250.012.08341425
TGCCGTC119250.011.39217855
GAGCGTC200300.011.35447119
GCGTCGT205450.011.10271921
AGCGTCG206400.011.06857920
CGTATCA180950.011.05930859
GTCGTGT210600.011.040030523
CTCGGTG214500.010.96275347
GAGACCG213700.010.89562340
TGTAGGG215600.010.67681127
TCGGTGG218850.010.64300348