Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945441.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 56863358 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 21245 | 0.0 | 17.86534 | 5 |
TATACTG | 29560 | 0.0 | 15.5591955 | 5 |
TACCGTG | 15935 | 0.0 | 15.282111 | 7 |
TCTATAC | 38765 | 0.0 | 15.172237 | 3 |
CCGTGAG | 15630 | 0.0 | 14.768659 | 9 |
ATACCGT | 19890 | 0.0 | 14.634631 | 6 |
CATACAC | 164065 | 0.0 | 14.34238 | 3 |
ACATGAC | 128535 | 0.0 | 14.148456 | 8 |
CATGACA | 130785 | 0.0 | 13.77511 | 9 |
ACACATG | 160310 | 0.0 | 13.68636 | 6 |
TATACAG | 27595 | 0.0 | 13.564676 | 5 |
ACCGTGA | 18930 | 0.0 | 13.467951 | 8 |
CTATACT | 29690 | 0.0 | 13.404017 | 4 |
GTATAGA | 42020 | 0.0 | 13.374422 | 1 |
CACATGA | 157880 | 0.0 | 13.219194 | 7 |
TCATACA | 178865 | 0.0 | 12.988931 | 2 |
GTGTATG | 149750 | 0.0 | 12.845288 | 1 |
ATCATAC | 179955 | 0.0 | 12.605185 | 1 |
CTAGTAC | 20340 | 0.0 | 12.365863 | 3 |
GTATATA | 86400 | 0.0 | 12.350414 | 1 |