Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945582.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 82050286 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 36 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 24520 | 0.0 | 8.055809 | 94-95 |
CGTATGC | 26130 | 0.0 | 6.799098 | 94-95 |
GTATGCC | 24840 | 0.0 | 6.491454 | 94-95 |
CGCCGTA | 19615 | 0.0 | 6.42653 | 92-93 |
TGGTCGC | 30125 | 0.0 | 6.346679 | 94-95 |
CGGCTAC | 66955 | 0.0 | 6.2142735 | 94-95 |
GTCGCCG | 29865 | 0.0 | 6.209103 | 94-95 |
TGCCGTC | 15275 | 0.0 | 6.0887322 | 94-95 |
CTCGGTG | 51595 | 0.0 | 6.0328655 | 94-95 |
TATGCCG | 19380 | 0.0 | 6.0025134 | 94-95 |
ACGGCTA | 70745 | 0.0 | 5.694132 | 94-95 |
CACGGCT | 73275 | 0.0 | 5.5072794 | 92-93 |
TCGTATG | 36270 | 0.0 | 5.453995 | 94-95 |
CCGTATC | 24695 | 0.0 | 5.4218745 | 94-95 |
GCCGTCT | 16855 | 0.0 | 5.3841333 | 92-93 |
GCCGTAT | 25180 | 0.0 | 5.356755 | 92-93 |
TCGGTGG | 48630 | 0.0 | 5.328976 | 94-95 |
AGTCACG | 87585 | 0.0 | 5.243684 | 94-95 |
GTCACGG | 81165 | 0.0 | 5.080188 | 94-95 |
CAGTCAC | 104545 | 0.0 | 5.0788245 | 94-95 |