Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945631.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 60838074 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 442703 | 0.7276742521467724 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 213911 | 0.35160712023855323 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 86030 | 0.1414081583187528 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 136655 | 0.0 | 51.97266 | 9 |
GCGGTTC | 136955 | 0.0 | 50.914215 | 11 |
TATGCCG | 106720 | 0.0 | 50.69911 | 43 |
AGAGCGG | 146005 | 0.0 | 50.537388 | 8 |
AGCGGTT | 138910 | 0.0 | 50.493893 | 10 |
CGTATGC | 109610 | 0.0 | 50.020798 | 41 |
TGCCGTC | 101585 | 0.0 | 49.884262 | 45 |
GTATGCC | 109410 | 0.0 | 49.823593 | 42 |
ATGCCGT | 103450 | 0.0 | 49.775837 | 44 |
GCCGTCT | 99745 | 0.0 | 49.315968 | 46 |
GAGACCG | 125900 | 0.0 | 48.8294 | 30 |
CGAGACC | 127830 | 0.0 | 48.458893 | 29 |
TCGTATG | 116315 | 0.0 | 47.808342 | 40 |
GACCGAT | 124410 | 0.0 | 47.461018 | 32 |
AGACCGA | 129930 | 0.0 | 47.005642 | 31 |
CCGATAT | 81180 | 0.0 | 46.667297 | 34 |
AATGCCG | 139130 | 0.0 | 46.053013 | 24 |
GTTCAGC | 148370 | 0.0 | 45.822483 | 14 |
TATCGTA | 79510 | 0.0 | 45.608562 | 38 |
CAGCAGG | 148200 | 0.0 | 45.12317 | 17 |