Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945593.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 174942902 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 42195 | 0.0 | 24.50393 | 1 |
GGCATTC | 68600 | 0.0 | 15.261446 | 2 |
CCTGCTG | 69660 | 0.0 | 14.338681 | 8 |
ATTCCTG | 74435 | 0.0 | 13.930465 | 5 |
GCATTCC | 79480 | 0.0 | 13.336814 | 3 |
TTCCTGC | 81085 | 0.0 | 12.74126 | 6 |
TCCTGCT | 96400 | 0.0 | 10.83893 | 7 |
CTGCTGA | 98955 | 0.0 | 10.392907 | 9 |
CGAGATC | 91095 | 0.0 | 10.29746 | 18-19 |
TATGCCG | 37370 | 0.0 | 8.879925 | 62-63 |
CGCCGTA | 35945 | 0.0 | 8.866283 | 66-67 |
GCCGTAT | 36235 | 0.0 | 8.548848 | 66-67 |
GGTCGCC | 40775 | 0.0 | 8.282482 | 62-63 |
CCGAGAT | 117670 | 0.0 | 8.12961 | 16-17 |
GTTCAGC | 112615 | 0.0 | 8.110934 | 3 |
ATGCCGT | 38860 | 0.0 | 8.110454 | 64-65 |
GCTGAAC | 64645 | 0.0 | 8.048967 | 10-11 |
CAGCAGG | 115755 | 0.0 | 7.9550695 | 6 |
CAGGAAT | 116985 | 0.0 | 7.9397264 | 9 |
CGTATGC | 43130 | 0.0 | 7.9059935 | 60-61 |