FastQCFastQC Report
Wed 16 Nov 2016
SRR1945694.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945694.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59262012
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG907050.15305757759287686Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA171400.036.128356
GCCGTAT178650.034.6610857
GGTCGCC203950.034.44378753
TGGTCGC214350.032.18718352
CCGTATC198850.030.66405358
CCGGCAT85150.028.7489931
ATCAGCC234450.027.209352
GGCTGAT233300.026.861652
CGTATCA223450.026.73721359
TCGGTGG290300.026.28584748
CTCGGTG288350.026.1703947
GTCGCCG276950.025.35190254
TATGCCG195250.025.09713753
TCGCCGT248300.025.03557255
GGTGGTC289100.024.49395250
ATGCCGT188800.022.82112354
GAGTGTA334350.022.6967437
CGTATGC225300.022.54355451
CAGCCAA365200.022.1326624
CGGTGGT326400.022.02739749