Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945472.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 55399482 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 36 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 27065 | 0.0 | 9.453019 | 4 |
GGTCGCC | 6625 | 0.0 | 8.118385 | 44-45 |
AGAGCGT | 15720 | 0.0 | 7.9844337 | 9 |
GATCGGA | 35235 | 0.0 | 7.4053926 | 2 |
CGGAAGA | 37360 | 0.0 | 7.3035283 | 5 |
GCACACG | 9880 | 0.0 | 7.2349443 | 12-13 |
ATCGGAA | 38450 | 0.0 | 7.0946527 | 3 |
TATGCCG | 7705 | 0.0 | 6.662013 | 46-47 |
CGCCGTA | 7635 | 0.0 | 6.633051 | 46-47 |
AAGAGCG | 19805 | 0.0 | 6.5901575 | 8 |
GAGCGTC | 9615 | 0.0 | 6.5270624 | 10-11 |
TGGTCGC | 8900 | 0.0 | 6.4969487 | 42-43 |
GCGTCGT | 11005 | 0.0 | 6.431663 | 12-13 |
AGCGTCG | 10400 | 0.0 | 6.3842144 | 10-11 |
TGCCGTC | 7605 | 0.0 | 6.3356404 | 48-49 |
AGAGCAC | 23610 | 0.0 | 6.1829624 | 9 |
GCCGTCT | 8595 | 0.0 | 6.147966 | 50-51 |
GAAGAGC | 47270 | 0.0 | 6.1379733 | 7 |
ATGCCGT | 8430 | 0.0 | 5.8244734 | 48-49 |
CGTCGTG | 12615 | 0.0 | 5.6108165 | 12-13 |