FastQCFastQC Report
Wed 16 Nov 2016
SRR1945596.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945596.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37339616
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG127650.017.0251715
TATACTG199850.015.515745
TACCGTG90450.015.3576747
TCTATAC249800.015.1577343
CCGTGAG99400.014.741119
CATACAC1051500.014.1864753
ATACCGT120450.013.9507266
TATACAG185750.013.9193065
ACCGTGA126800.013.8175118
CTATACT211950.013.7208594
GTATAGA274100.013.35267451
ACACATG1057850.013.2669166
ACATGAC790400.013.2206858
GACCGTG58550.013.0105117
CATGACA803300.012.8632399
GTGTATG948000.012.8376221
TCATACA1151750.012.7926622
TAGACCG87800.012.7589835
CTAGTAC124600.012.6948233
CACATGA1033500.012.6689927