Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945641.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 82041590 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 115618 | 0.14092608395327297 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 25610 | 0.0 | 37.38795 | 1 |
CGAGATC | 54720 | 0.0 | 30.52315 | 18 |
CCGAGAT | 58405 | 0.0 | 28.611603 | 17 |
CCTGCTG | 32505 | 0.0 | 27.744883 | 8 |
GGCATTC | 34705 | 0.0 | 26.843704 | 2 |
GCTGAAC | 32305 | 0.0 | 26.817186 | 11 |
GCATTCC | 36580 | 0.0 | 25.581314 | 3 |
TATGCCG | 21925 | 0.0 | 24.860407 | 63 |
ATTCCTG | 37795 | 0.0 | 24.681814 | 5 |
GAGATCG | 70665 | 0.0 | 23.65946 | 19 |
AACCGAG | 32700 | 0.0 | 23.477633 | 15 |
TTCCTGC | 40530 | 0.0 | 23.190807 | 6 |
CGTATGC | 25010 | 0.0 | 22.505833 | 61 |
TGAACCG | 39025 | 0.0 | 22.110216 | 13 |
GAGACCG | 40290 | 0.0 | 22.039251 | 50 |
GTATGCC | 25225 | 0.0 | 21.940027 | 62 |
GAACCGA | 35070 | 0.0 | 21.65168 | 14 |
CTGAACC | 40820 | 0.0 | 21.50598 | 12 |
ATGCCGT | 22035 | 0.0 | 21.45188 | 64 |
CGAGACC | 41920 | 0.0 | 21.253183 | 49 |