FastQCFastQC Report
Wed 16 Nov 2016
SRR1945608.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945608.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66112654
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT9896931.496979685613589Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT4515980.683073470322338Illumina Paired End PCR Primer 2 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT2587550.059.6887329
GCGGTTC2551750.059.326111
AGCGGTT2597250.058.65020810
AGAGCGG2735400.058.560158
GTTCAGC2615150.056.58695614
TATGCCG2099700.056.3092743
CGGTTCA2678200.056.19256612
AATGCCG2476150.056.1808324
GGTTCAG2676200.055.99799313
CAGCAGG2599100.055.921717
CGTATGC2150150.055.7876241
ATGCCGT1931150.055.76169644
GTATGCC2147350.055.69711342
GAGACCG2415200.055.68453230
TGCCGTC1915550.055.48660745
CGAGACC2440450.055.4776829
CAGGAAT2576150.055.1890620
GACCGAT2395850.055.09763332
GCCGTCT1829100.055.04639446
GAATGCC2550800.054.84913323