FastQCFastQC Report
Wed 16 Nov 2016
SRR1945621.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945621.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31771284
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT357630.11256391148686343Illumina Paired End PCR Primer 2 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGAG214000.048.04162626
CCGAGAC218200.046.34407828
AATGCCG233400.046.28477524
CGAGACC214550.046.22737529
ATGCCGA228350.045.9415525
GCCGAGA223350.045.76453827
GAGCGGT294050.045.5397839
GAGACCG212300.045.4922330
CAGCAGG265550.045.4794717
GACCGAT199600.043.9274432
GCGGTTC298850.043.6391511
AGAGCGG317450.043.063578
AGCGGTT308450.042.9074410
GAATGCC260100.042.56971423
TATGCCG154850.042.18209543
TGCCGTC132950.041.99756245
GGAATGC273100.041.811122
GTTCAGC295350.041.7955514
AGACCGA224200.041.75528331
CGGTTCA311200.041.64294412