Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945514.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44732944 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 16535 | 0.0 | 13.3869 | 5 |
TATACTG | 23735 | 0.0 | 13.24647 | 5 |
CTATACT | 24575 | 0.0 | 12.047857 | 4 |
GTATAGA | 31190 | 0.0 | 11.776165 | 1 |
TCTATAC | 30375 | 0.0 | 11.713249 | 3 |
CATACAC | 92250 | 0.0 | 10.831651 | 3 |
TAATACT | 41130 | 0.0 | 10.603569 | 4 |
TAGACTG | 10940 | 0.0 | 10.567715 | 5 |
GTATAGG | 17275 | 0.0 | 10.481197 | 1 |
ATACCGT | 16655 | 0.0 | 10.327631 | 6 |
GTATTAG | 30055 | 0.0 | 10.264915 | 1 |
GTGTATG | 89155 | 0.0 | 10.207127 | 1 |
GTATATA | 65025 | 0.0 | 10.168882 | 1 |
ACACATG | 95080 | 0.0 | 10.147616 | 6 |
ACATGAC | 77770 | 0.0 | 10.12215 | 8 |
GTCGCGC | 2205 | 0.0 | 10.0175 | 8 |
TACACTG | 13615 | 0.0 | 9.906667 | 5 |
GTACTAG | 18005 | 0.0 | 9.821164 | 1 |
TATACAG | 25425 | 0.0 | 9.796663 | 5 |
CACATGA | 91920 | 0.0 | 9.775571 | 7 |