Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945701.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43257130 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 11130 | 0.0 | 15.646212 | 48-49 |
TATGCCG | 13060 | 0.0 | 14.6473 | 46-47 |
GCCGTCT | 11670 | 0.0 | 14.519464 | 48-49 |
ATGCCGT | 12405 | 0.0 | 13.943038 | 46-47 |
CGTATGC | 15280 | 0.0 | 12.611102 | 44-45 |
GTATGCC | 15240 | 0.0 | 12.304969 | 44-45 |
CCGTCTT | 19195 | 0.0 | 9.439608 | 50-51 |
TCGTATG | 22715 | 0.0 | 8.4419 | 42-43 |
CTCGTAT | 20945 | 0.0 | 7.6855154 | 42-43 |
CTGCTTG | 19820 | 0.0 | 6.86513 | 56-57 |
CACAGTG | 33715 | 0.0 | 6.530948 | 32-33 |
TCTCGTA | 23710 | 0.0 | 6.422591 | 40-41 |
CGTCTTC | 27550 | 0.0 | 6.3721604 | 50-51 |
GAGCACA | 79060 | 0.0 | 5.9380965 | 9 |
CAGTGAT | 35700 | 0.0 | 5.858506 | 34-35 |
ACAGTGA | 40215 | 0.0 | 5.8143353 | 34-35 |
AGAGCAC | 81220 | 0.0 | 5.8033204 | 8 |
AGTGATC | 30225 | 0.0 | 5.683599 | 36-37 |
ATCTCGT | 28265 | 0.0 | 5.645308 | 40-41 |
CTTCTGC | 29200 | 0.0 | 5.6416187 | 54-55 |