Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945651.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 151119482 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 451471 | 0.29875102404069914 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 274695 | 0.18177338643868565 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 35915 | 0.0 | 29.118614 | 1 |
TGCCGTC | 160240 | 0.0 | 28.08822 | 44-45 |
TATGCCG | 167470 | 0.0 | 27.923405 | 42-43 |
CGTATGC | 178660 | 0.0 | 26.284649 | 40-41 |
GAGCGGT | 408690 | 0.0 | 25.74703 | 9 |
GCCGTCT | 161840 | 0.0 | 24.850794 | 46-47 |
ATGCCGT | 161990 | 0.0 | 24.786077 | 44-45 |
AGAGCGG | 487045 | 0.0 | 24.403297 | 8 |
GAGCGGC | 52710 | 0.0 | 24.021332 | 9 |
GTATGCC | 178520 | 0.0 | 23.36973 | 42-43 |
GAGGGGC | 33020 | 0.0 | 22.850712 | 9 |
CCGTCTT | 202535 | 0.0 | 22.471447 | 46-47 |
CTCGTAT | 125845 | 0.0 | 21.898285 | 38-39 |
TCGTATG | 195265 | 0.0 | 21.224419 | 40-41 |
CTGCTTG | 181305 | 0.0 | 20.744095 | 54-55 |
GGGCGCC | 50245 | 0.0 | 20.502007 | 42-43 |
CTTCTGC | 224995 | 0.0 | 19.983969 | 50-51 |
CTCGGGG | 58250 | 0.0 | 19.681986 | 36-37 |
AGACCGA | 262425 | 0.0 | 18.923172 | 30-31 |
CGAGACC | 271445 | 0.0 | 18.507095 | 28-29 |