FastQCFastQC Report
Wed 16 Nov 2016
SRR1945717.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945717.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22736672
Sequences flagged as poor quality0
Sequence length20-76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT33700.08.201581
GGTCGCC20700.08.12001363
TATGCCG25650.07.91820163
CCTGCTG53300.06.95682578
GCCGTAT29000.06.88270167
CGCCGTA26750.06.80695766
TGCCGTC30100.06.63092565
ATGCCGT30550.06.53309464
GCTGAAC60650.06.51712711
GCCGTCT34400.06.514708566
CGTATGC29650.06.497687361
TGGTCGC31800.05.947347662
GTATGCC34100.05.85432962
GGCATTC60150.05.6983142
CCGTATC38450.05.555390468
GCATTCC69200.05.5091673
TGAACCG75500.05.28240213
CCGAGAT80750.05.24216517
GAGACCG45950.05.17900350
ATTCCTG73550.05.1365635