Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945717.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22736672 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-76 |
%GC | 40 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 3370 | 0.0 | 8.20158 | 1 |
GGTCGCC | 2070 | 0.0 | 8.120013 | 63 |
TATGCCG | 2565 | 0.0 | 7.918201 | 63 |
CCTGCTG | 5330 | 0.0 | 6.9568257 | 8 |
GCCGTAT | 2900 | 0.0 | 6.882701 | 67 |
CGCCGTA | 2675 | 0.0 | 6.806957 | 66 |
TGCCGTC | 3010 | 0.0 | 6.630925 | 65 |
ATGCCGT | 3055 | 0.0 | 6.533094 | 64 |
GCTGAAC | 6065 | 0.0 | 6.517127 | 11 |
GCCGTCT | 3440 | 0.0 | 6.5147085 | 66 |
CGTATGC | 2965 | 0.0 | 6.4976873 | 61 |
TGGTCGC | 3180 | 0.0 | 5.9473476 | 62 |
GTATGCC | 3410 | 0.0 | 5.854329 | 62 |
GGCATTC | 6015 | 0.0 | 5.698314 | 2 |
CCGTATC | 3845 | 0.0 | 5.5553904 | 68 |
GCATTCC | 6920 | 0.0 | 5.509167 | 3 |
TGAACCG | 7550 | 0.0 | 5.282402 | 13 |
CCGAGAT | 8075 | 0.0 | 5.242165 | 17 |
GAGACCG | 4595 | 0.0 | 5.179003 | 50 |
ATTCCTG | 7355 | 0.0 | 5.136563 | 5 |