Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945664.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 52222376 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 20370 | 0.0 | 9.28029 | 3 |
TATGCCG | 7290 | 0.0 | 8.6818 | 46-47 |
GCACACG | 7460 | 0.0 | 8.417488 | 10-11 |
CGTATGC | 7965 | 0.0 | 7.889648 | 44-45 |
GAGCACA | 17975 | 0.0 | 7.3761034 | 9 |
ATCGGAA | 26110 | 0.0 | 7.3681636 | 2 |
CGGAAGA | 26680 | 0.0 | 7.351898 | 4 |
GATCGGA | 26235 | 0.0 | 7.319721 | 1 |
ATGCCGT | 8815 | 0.0 | 7.286212 | 46-47 |
TGCCGTC | 8885 | 0.0 | 7.2787414 | 48-49 |
GCCGTCT | 9015 | 0.0 | 7.2257624 | 48-49 |
GTATGCC | 9500 | 0.0 | 6.7382584 | 44-45 |
ACGTCTG | 10415 | 0.0 | 6.099745 | 14-15 |
AGAGCAC | 21330 | 0.0 | 6.0839477 | 8 |
GAGCGTC | 8635 | 0.0 | 6.0224066 | 9 |
GGGCGCC | 3525 | 0.0 | 5.3883257 | 42-43 |
CACACGT | 12845 | 0.0 | 5.291801 | 12-13 |
GTCACCG | 13405 | 0.0 | 5.225 | 28-29 |
ACACGTC | 12550 | 0.0 | 5.154719 | 12-13 |
CCGATGT | 13635 | 0.0 | 5.0706964 | 32-33 |