Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945636.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31737828 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 5385 | 0.0 | 8.596864 | 46-47 |
CGTATGC | 6035 | 0.0 | 7.4764977 | 44-45 |
TGCCGTC | 6515 | 0.0 | 7.2880526 | 48-49 |
GCCGTCT | 6660 | 0.0 | 7.270554 | 48-49 |
ATGCCGT | 6485 | 0.0 | 7.1748815 | 46-47 |
GTATGCC | 6765 | 0.0 | 7.0171027 | 44-45 |
GGGCGCC | 2215 | 0.0 | 6.473225 | 42-43 |
CGCCGTA | 4410 | 0.0 | 5.43527 | 46-47 |
CTCGTAT | 9995 | 0.0 | 5.0326366 | 42-43 |