Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945605.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 132093438 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 29270 | 0.0 | 20.868711 | 1 |
GGCATTC | 49055 | 0.0 | 13.008946 | 2 |
CCTGCTG | 47470 | 0.0 | 12.639369 | 8 |
ATTCCTG | 53135 | 0.0 | 11.752496 | 5 |
GCATTCC | 57745 | 0.0 | 11.262675 | 3 |
TTCCTGC | 61530 | 0.0 | 10.209778 | 6 |
TCCTGCT | 76275 | 0.0 | 8.30968 | 7 |
CTGCTGA | 74295 | 0.0 | 8.265459 | 9 |
CGCCGTA | 23895 | 0.0 | 7.671439 | 66-67 |
GCCGTAT | 23605 | 0.0 | 7.6360917 | 66-67 |
CGAGATC | 66045 | 0.0 | 7.3020587 | 18-19 |
GCTGAAC | 45780 | 0.0 | 6.804152 | 10-11 |
TATGCCG | 27340 | 0.0 | 6.7982526 | 62-63 |
CATTCCT | 112635 | 0.0 | 6.4500494 | 4 |
GGTCGCC | 31005 | 0.0 | 6.3129535 | 62-63 |
ATGCCGT | 29165 | 0.0 | 6.2357955 | 64-65 |
CCGAGAT | 83585 | 0.0 | 6.087326 | 16-17 |
CCGTATC | 32265 | 0.0 | 5.9952784 | 68-69 |
CGTATGC | 32535 | 0.0 | 5.8853307 | 60-61 |
GCCGTCT | 32315 | 0.0 | 5.6434402 | 66-67 |