FastQCFastQC Report
Wed 16 Nov 2016
SRR1945606.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945606.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences155352494
Sequences flagged as poor quality0
Sequence length100
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT375400.019.5175821
CCTGCTG557300.013.0095438
GGCATTC589650.012.8935972
GCATTCC688150.011.2938663
ATTCCTG678700.011.1270665
TTCCTGC749300.010.0585176
CGAGATC750700.09.21092718-19
CAGCAGG790800.09.0374916
CTGCTGA829800.09.0204949
GTTCAGC778600.09.0090483
TCCTGCT893900.08.5943057
GGCTGAT513450.08.4572772
CGGTTCA884750.08.0950461
CAGGAAT892100.08.0218479
CCGAGAT901350.07.939851816-17
ATCAGCC550500.07.870992
GCAGGAA970050.07.527358
CGCCGTA311450.07.51555556-57
GGTTCAG968650.07.4310742
GGTCGCC364650.07.243896562-63