Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945492.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 91209726 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 42925 | 0.0 | 21.72338 | 3 |
GATCGGA | 48565 | 0.0 | 19.570196 | 1 |
GTCACGC | 19935 | 0.0 | 18.34213 | 28-29 |
CGGAAGA | 54015 | 0.0 | 17.854885 | 4 |
GAGCACA | 44030 | 0.0 | 17.749727 | 9 |
AGAGCAC | 44525 | 0.0 | 17.721176 | 8 |
TCACGCC | 20800 | 0.0 | 17.680935 | 30-31 |
ATCGGAA | 54560 | 0.0 | 17.650854 | 2 |
CACGCCA | 22535 | 0.0 | 16.674204 | 30-31 |
GCACACG | 25795 | 0.0 | 14.902676 | 10-11 |
CGCCAAT | 25445 | 0.0 | 14.378969 | 32-33 |
ACGTCTG | 27520 | 0.0 | 13.831879 | 14-15 |
AGTCACG | 27225 | 0.0 | 13.698263 | 28-29 |
GAAGAGC | 70285 | 0.0 | 13.633436 | 6 |
CGTCTGA | 29955 | 0.0 | 12.966592 | 16-17 |
CACGTCT | 32450 | 0.0 | 12.070783 | 14-15 |
TCCAGTC | 31770 | 0.0 | 12.062927 | 24-25 |
CCAGTCA | 32540 | 0.0 | 11.806833 | 26-27 |
ACGCCAA | 32910 | 0.0 | 11.767139 | 32-33 |
ACACGTC | 33525 | 0.0 | 11.536544 | 12-13 |