FastQCFastQC Report
Wed 16 Nov 2016
SRR1945683.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945683.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77515856
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA98850.015.5037156
TATGCCG117800.014.96706663
GCCGTAT110150.013.91314357
GGTCGCC123150.013.864553
GAGACCG243000.013.75055150
CGAGACC245850.013.56243249
CGTATGC139050.013.30930961
CGAGATC301350.012.89475118
AGAGCGG292200.012.77108328
GAGCGGT265800.012.66890629
GAGCGTC149650.012.65198619
CGTGTAG147950.012.56549925
AGCGTCG149900.012.39756420
AATGCCG287300.012.39202413
GCGTCGT151950.012.30665221
GCGGTTC278000.012.10015331
TGGTCGC143300.011.84125752
GTATGCC158350.011.64293662
CCGTATC137950.011.38833658
TGCCGAG319750.011.26591715