FastQCFastQC Report
Wed 16 Nov 2016
SRR1945731.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945731.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences143013042
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT319050.023.7602651
CGCCGTA202550.019.53485566
CGAGATC654500.019.33508518
TATGCCG225900.018.20649763
GCCGTAT218800.018.05287767
GGTCGCC258500.017.22389663
ATGCCGT220100.016.7313664
CGTATGC267000.016.23790661
CCTGCTG473700.015.7789438
GCTGAAC450750.015.75472511
GAGACCG387750.015.26143150
CCGAGAT858300.015.23688617
CGAGACC392250.015.10671749
TGGTCGC287500.015.0941462
GGCATTC512350.015.081362
CCGTATC263250.014.79203568
GAGATCG863800.014.75957119
ATTCCTG528350.014.5905695
GTATGCC293850.014.4702262
GCATTCC541250.014.3134933