FastQCFastQC Report
Wed 16 Nov 2016
SRR1945513.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945513.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33626870
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG158250.012.4433945
CTATACT168650.012.1497884
TATACCG102600.011.222445
CATACAC1080300.010.906913
GTATAGA211300.010.8616791
ACATGAC865700.010.8412788
ACACATG1067000.010.6987166
TATACAG150300.010.5688145
GTATTAG195200.010.5046931
GTATATA472650.010.4876371
CATGACA887850.010.4491589
GTGTATG1019050.010.4347431
ACTGTGC53400.010.38509758
CACATGA1035600.010.32877357
GTACTAG135400.010.1424041
TCTATAC194500.010.0764663
TAGTACT197050.010.04093554
GTACTGC71250.010.025996
TCATACA1164700.010.003852
TAGGCTG102950.09.8604335