Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945713.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 83681806 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 11400 | 0.0 | 7.634661 | 1 |
AATGCCG | 13965 | 0.0 | 6.9541163 | 13 |
CGAGATC | 26260 | 0.0 | 6.1995025 | 18 |
GAGACCG | 15530 | 0.0 | 5.6823425 | 50 |
GGTCGCC | 8235 | 0.0 | 5.6225653 | 63 |
AGAGCGG | 19000 | 0.0 | 5.568856 | 28 |
GAGCGGT | 16330 | 0.0 | 5.4959545 | 29 |
GAGATCG | 29940 | 0.0 | 5.4725056 | 19 |
CGAGACC | 16500 | 0.0 | 5.451827 | 49 |
TCGGAAG | 30795 | 0.0 | 5.374984 | 23 |
TATGCCG | 7290 | 0.0 | 5.340964 | 63 |
CGCCGTA | 7980 | 0.0 | 5.310052 | 66 |
TGCCGAG | 18835 | 0.0 | 5.1745987 | 15 |
CCGAGAT | 34575 | 0.0 | 5.1428313 | 17 |
GCGGTTC | 18200 | 0.0 | 5.104176 | 31 |
AAGAGCG | 30685 | 0.0 | 5.0982404 | 27 |