FastQCFastQC Report
Wed 16 Nov 2016
SRR1945491.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945491.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86206040
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG328900.010.2343753
TATGCCG127600.09.02103346-47
GCACACG133100.08.39820910-11
CGTATGC136500.08.36676144-45
TGCCGTC142050.08.14965748-49
GATCGGA436250.08.132061
ATGCCGT147100.07.95267646-47
ATCGGAA458750.07.9007052
CGGAAGA449850.07.8974674
GCCGTCT151100.07.66154148-49
GAGCACA306850.07.57385839
GTATGCC157700.07.3312244-45
AGAGCAC337600.07.0641978
ACGTCTG167200.06.786996414-15
GAGCGTC137150.06.6960999
GGGCGCC49350.05.797741442-43
ACACGTC218000.05.6348212-13
CGTCTGA229900.05.38516516-17
GAAGAGC662900.05.37959586
ACTGACC234050.05.327836532-33