FastQCFastQC Report
Wed 16 Nov 2016
SRR1945584.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945584.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48064556
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG148350.015.0722265
CATACAC1459950.014.8794913
ACATGAC1110450.014.4137888
TCTATAC314150.014.3633553
ACACATG1391000.014.2609396
TATACTG250550.014.1464165
CATGACA1148450.013.8509279
CACATGA1370000.013.8057667
CTATACT270250.013.7783994
TCATACA1590750.013.5113522
CTAGTAC157800.013.45968153
TACCGTG111600.013.4507447
ATCATAC1582900.013.1938051
GTGTATG1323150.013.08562851
TATACAG233050.012.9975625
ATACCGT141600.012.8161476
GAGCGCG28050.012.7797647
GTATAGA325750.012.6493411
CCGTGAG109650.012.4638949
TACACAT1798300.012.3963925