FastQCFastQC Report
Wed 16 Nov 2016
SRR1945444.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945444.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42287500
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG134850.017.250125
TATACTG217200.015.8348055
TACCGTG94700.014.9190717
TCTATAC281500.014.6463833
CATACAC1289700.014.2474823
ACATGAC947150.014.1521998
ATACCGT126400.013.9247976
CCGTGAG105500.013.88176259
CTAGTAC128900.013.7608633
CTATACT229900.013.7140224
GTATAGG147900.013.6285711
TATACAG201100.013.5779465
ACACATG1253800.013.5600266
CATGACA967750.013.5461579
CACATGA1218700.013.2206767
ACCGTGA132400.013.18623358
GTGTATG1153700.013.0685431
GTATAGA295950.013.0607721
TCATACA1405800.012.9838682
TACACAT1474900.012.5432365