FastQCFastQC Report
Wed 16 Nov 2016
SRR1945619.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945619.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62468750
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG974550.15600600300150075Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT210550.044.525371
CCGAGAT474250.036.14115517
CCTGCTG257300.034.4415978
CGAGATC499600.034.30985618
GGCATTC269550.033.699742
GCTGAAC267950.032.0654711
GCATTCC285000.032.0599633
ATTCCTG297750.030.2670735
TATGCCG221200.029.896663
AACCGAG268600.029.51703315
GGGCGCC58100.029.25673563
TGAACCG291700.028.91997513
GAACCGA274150.028.50049414
CGTATGC239850.028.3061861
TTCCTGC321650.028.0404036
TGCCGTC218950.026.99277765
GTATGCC252450.026.55920862
ATGCCGT225950.026.42182464
GAGACCG341300.026.37572550
CTGAACC331750.025.83357612