Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945670.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 56932286 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGACCG | 14810 | 0.0 | 13.34301 | 50 |
CGAGACC | 16460 | 0.0 | 12.131828 | 49 |
GACCGAT | 14255 | 0.0 | 11.90058 | 52 |
AATGCCG | 17855 | 0.0 | 11.883362 | 13 |
TGCCGAG | 18435 | 0.0 | 11.452826 | 15 |
ATGCCGA | 19785 | 0.0 | 10.847552 | 14 |
CCGAGAT | 23100 | 0.0 | 10.517467 | 17 |
AGACCGA | 18435 | 0.0 | 10.321293 | 51 |
GCGGTTC | 19675 | 0.0 | 10.0611315 | 31 |
GAGCGGT | 20690 | 0.0 | 9.887879 | 29 |
CCGAGAC | 20415 | 0.0 | 9.883746 | 48 |
GCCGAGA | 22645 | 0.0 | 9.663326 | 16 |
TATGCCG | 7085 | 0.0 | 9.280544 | 63 |
CGAGATC | 27085 | 0.0 | 9.163846 | 18 |
GAATGCC | 23705 | 0.0 | 9.142652 | 12 |
AGCGGTT | 22635 | 0.0 | 8.976867 | 30 |
AGAGCGG | 25410 | 0.0 | 8.972961 | 28 |
CAGCAGG | 25845 | 0.0 | 8.521732 | 6 |
GGAATGC | 26640 | 0.0 | 8.293306 | 11 |
GTTCAGC | 26100 | 0.0 | 7.9212694 | 34 |