FastQCFastQC Report
Wed 16 Nov 2016
SRR1945534.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945534.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83939888
Sequences flagged as poor quality0
Sequence length40-101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC179650.07.595231594-95
CGTATGC236950.06.47415194-95
TATGCCG178950.06.1443794-95
GTATGCC223950.05.998157594-95
TGGTCGC239850.05.8214694-95
TGCCGTC148150.05.794344494-95
CTCGGTG401550.05.476454394-95
CGCCGTA163300.05.435250894-95
GTCGCCG251450.05.394849394-95
ATGCCGT169950.05.284933694-95
CACTAGC664150.05.06638994-95
GCCGTCT155050.05.058024494-95
TCGTATG353900.05.001000494-95