Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945629.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34457100 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 584546 | 1.6964457252641691 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCCGTAT | 7825 | 0.0 | 25.740425 | 57 |
CGCCGTA | 7920 | 0.0 | 25.675953 | 56 |
GGTCGCC | 8430 | 0.0 | 25.646736 | 53 |
TGGTCGC | 9755 | 0.0 | 21.983408 | 52 |
CCGTATC | 9695 | 0.0 | 20.811892 | 58 |
CCGAGAT | 16150 | 0.0 | 20.291178 | 17 |
GTCGCCG | 11530 | 0.0 | 18.82809 | 54 |
TATGCCG | 8730 | 0.0 | 18.804106 | 53 |
CGTATCA | 10760 | 0.0 | 18.62213 | 59 |
CGAGATC | 18455 | 0.0 | 18.136562 | 18 |
CGTATGC | 9440 | 0.0 | 17.77981 | 61 |
TGCCGTC | 9010 | 0.0 | 17.523733 | 55 |
CGGCATT | 6470 | 0.0 | 17.248285 | 1 |
TCGGTGG | 13250 | 0.0 | 17.129353 | 48 |
ATGCCGT | 9180 | 0.0 | 16.96815 | 54 |
GTATGCC | 9825 | 0.0 | 16.956638 | 52 |
GCCGTCT | 9400 | 0.0 | 16.459347 | 56 |
CTCGGTG | 13665 | 0.0 | 16.149736 | 47 |
GGCTGAT | 11570 | 0.0 | 15.973564 | 2 |
ATCAGCC | 11520 | 0.0 | 15.800281 | 2 |