FastQCFastQC Report
Wed 16 Nov 2016
SRR1945571.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945571.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109900370
Sequences flagged as poor quality0
Sequence length40-101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC310000.06.79074694-95
TGCCGTC208900.06.073567494-95
GTATGCC333000.06.0056394-95
TATGCCG271900.05.995050494-95
GCCGTCT226050.05.977733694-95
TGGTCGC370400.05.86772694-95
CGTATGC356500.05.545908594-95
CGCCGTA274200.05.333909590-91
ACGGCTA827050.05.290199394-95
CGGCTAC785950.05.27365994-95
CTCGGTG621200.05.252661794-95
GTCGCCG380050.05.232194494-95
ATGCCGT244000.05.17294392-93