Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945588.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 73026658 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 8335 | 0.0 | 6.755694 | 66 |
CGGCATT | 10785 | 0.0 | 6.7464833 | 1 |
GCCGTAT | 8550 | 0.0 | 6.6255302 | 67 |
GAGACCG | 34915 | 0.0 | 6.06639 | 70 |
GGTCGCC | 8920 | 0.0 | 6.0154495 | 63 |
GATCTCG | 36785 | 0.0 | 6.0046344 | 70 |
AATGCCG | 51980 | 0.0 | 5.9141626 | 70 |
CGAGACC | 38280 | 0.0 | 5.5695863 | 70 |
GACCGAT | 30625 | 0.0 | 5.526107 | 70 |
GAATGCC | 65035 | 0.0 | 5.5210524 | 70 |
AGACCGA | 37325 | 0.0 | 5.4596734 | 70 |
TGCCGAG | 49335 | 0.0 | 5.31176 | 70 |
TATGCCG | 7950 | 0.0 | 5.2495413 | 63 |
ATGCCGA | 56075 | 0.0 | 5.1960206 | 70 |
CCGTATC | 11255 | 0.0 | 5.1838007 | 68 |
CCGATAT | 19135 | 0.0 | 5.1425 | 70 |