Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945477.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 48325484 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 13865 | 0.0 | 37.112064 | 1 |
CCTGCTG | 21415 | 0.0 | 33.390846 | 8 |
GCTGAAC | 22205 | 0.0 | 32.171154 | 11 |
GGTCGCC | 9560 | 0.0 | 31.078907 | 63 |
GGCATTC | 22485 | 0.0 | 31.07337 | 2 |
GCATTCC | 22995 | 0.0 | 31.069221 | 3 |
ATTCCTG | 24685 | 0.0 | 29.471325 | 5 |
CGCCGTA | 10110 | 0.0 | 29.041788 | 66 |
TGAACCG | 25020 | 0.0 | 28.609201 | 13 |
GCCGTAT | 10385 | 0.0 | 28.548529 | 67 |
ACCGCTC | 13875 | 0.0 | 28.195683 | 16 |
GAACCGC | 14860 | 0.0 | 27.344622 | 14 |
TTCCTGC | 27110 | 0.0 | 26.809649 | 6 |
CTGAACC | 27365 | 0.0 | 26.22169 | 12 |
CCGCTCT | 14960 | 0.0 | 26.031977 | 17 |
TGGTCGC | 11865 | 0.0 | 25.099834 | 62 |
CCGTATC | 11890 | 0.0 | 24.964989 | 68 |
TATGCCG | 10210 | 0.0 | 24.879408 | 63 |
CTGCTGA | 29380 | 0.0 | 24.684149 | 9 |
AACCGCT | 16520 | 0.0 | 24.003874 | 15 |