FastQCFastQC Report
Wed 16 Nov 2016
SRR1945566.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945566.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39922294
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC18950.016.0795158
TATACTG202700.015.09876255
TATACCG132000.014.8687535
TCTATAC245000.014.1562663
CTATACT205950.014.1424734
CATACAC1002800.013.6065133
TAGGCTG120300.013.2977145
TATACAG192300.013.2122925
TCGCGCG26850.013.1842549
GTATATA613700.013.0799271
ACACATG1024100.012.8465966
GTGTATG932750.012.8129061
GTATAGA265650.012.7841221
ACATGAC837250.012.6735958
GTATAGG144500.012.3860021
CACATGA993850.012.2637277
TCATACA1106450.012.1375182
CATGACA860600.012.1214469
ATAATAC328650.012.039293
GTATTAT317200.011.9478351