Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945657.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 62668950 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 363935 | 0.5807261809875545 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 178989 | 0.2856103381339563 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 115645 | 0.0 | 51.571346 | 9 |
GCGGTTC | 115270 | 0.0 | 50.710567 | 11 |
TATGCCG | 88975 | 0.0 | 50.43911 | 43 |
AGCGGTT | 117335 | 0.0 | 50.211575 | 10 |
AGAGCGG | 123045 | 0.0 | 49.89128 | 8 |
CGTATGC | 91090 | 0.0 | 49.883087 | 41 |
ATGCCGT | 86160 | 0.0 | 49.292145 | 44 |
TGCCGTC | 85015 | 0.0 | 49.094803 | 45 |
GTATGCC | 92505 | 0.0 | 48.926975 | 42 |
GCCGTCT | 82560 | 0.0 | 48.885246 | 46 |
GAGACCG | 107895 | 0.0 | 48.162468 | 30 |
CGAGACC | 109055 | 0.0 | 47.920853 | 29 |
GACCGAT | 106545 | 0.0 | 46.824364 | 32 |
TCGTATG | 99370 | 0.0 | 46.823814 | 40 |
AGACCGA | 111485 | 0.0 | 46.352768 | 31 |
AATGCCG | 116820 | 0.0 | 46.09244 | 24 |
CCGATAT | 69430 | 0.0 | 46.05087 | 34 |
GTTCAGC | 125870 | 0.0 | 45.38367 | 14 |
CGGTTCA | 129060 | 0.0 | 45.005035 | 12 |
CAGCAGG | 126110 | 0.0 | 44.702114 | 17 |