FastQCFastQC Report
Wed 16 Nov 2016
SRR1945636.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945636.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31737828
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG53850.08.59686446-47
CGTATGC60350.07.476497744-45
TGCCGTC65150.07.288052648-49
GCCGTCT66600.07.27055448-49
ATGCCGT64850.07.174881546-47
GTATGCC67650.07.017102744-45
GGGCGCC22150.06.47322542-43
CGCCGTA44100.05.4352746-47
CTCGTAT99950.05.032636642-43