FastQCFastQC Report
Wed 16 Nov 2016
SRR1945599.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945599.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39389668
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG132350.016.3376945
TATACTG214500.015.6948845
TCTATAC275150.014.8067743
TATACAG197200.014.7334825
CATACAC1128000.014.7059443
CTATACT222100.014.480624
ATACCGT119550.014.2630866
TACCGTG96350.014.0743737
ACACATG1126950.013.9234036
ACATGAC844850.013.6213348
GTGTATG977450.013.53700351
TCATACA1218600.013.5061072
CATGACA849350.013.3754839
GTATAGA292550.013.2055481
ATCATAC1217050.013.1733491
CACATGA1099650.013.0765867
CCGTGAG84800.012.6883429
TACACAT1352950.012.4316025
TAGGCTG110700.012.4153345
GTATATA595250.012.2386351