Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945720.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 55700788 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG | 185808 | 0.33358235434658484 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGACCG | 32445 | 0.0 | 42.418446 | 61 |
CGAGACC | 32765 | 0.0 | 41.831665 | 60 |
GAGCGGT | 78810 | 0.0 | 38.592175 | 9 |
GCGGTTC | 78805 | 0.0 | 38.08913 | 11 |
GACCGAT | 31730 | 0.0 | 37.817974 | 63 |
AATGCCG | 66695 | 0.0 | 37.750546 | 24 |
CGAGATC | 39070 | 0.0 | 37.444767 | 29 |
AGAGCGG | 82340 | 0.0 | 37.357494 | 8 |
AGACCGA | 36220 | 0.0 | 37.32981 | 62 |
AGCGGTT | 81950 | 0.0 | 37.100582 | 10 |
GTTCAGC | 80380 | 0.0 | 36.70627 | 14 |
CAGCAGG | 80475 | 0.0 | 36.19848 | 17 |
TGCCGAG | 66120 | 0.0 | 35.050022 | 26 |
CGGTTCA | 86915 | 0.0 | 34.5587 | 12 |
GAATGCC | 74055 | 0.0 | 34.532196 | 23 |
ATGCCGA | 69480 | 0.0 | 34.492302 | 25 |
CCGAGAT | 44215 | 0.0 | 34.367664 | 28 |
GGTTCAG | 87305 | 0.0 | 34.276062 | 13 |
CAGGAAT | 78915 | 0.0 | 33.63523 | 20 |
GCAGGAA | 81245 | 0.0 | 33.600613 | 19 |