FastQCFastQC Report
Wed 16 Nov 2016
SRR1945563.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945563.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15197651
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG59050.018.7201465
GTCGCGC7750.017.5865298
TATACTG74900.015.0098855
ATACCGT51750.014.8970476
CTAGTAC54700.014.8771613
TCTATAC99200.014.7472133
TAGGCTG44150.014.0638585
TCGCGCG10750.013.9897399
TACCGTG51200.013.9552457
CTATACT78500.013.8421514
GTATAGA110300.013.5736431
CATACAC485550.013.2917273
CCGTGAG39000.013.2555019
ACATGAC361650.012.9046028
ACACATG482200.012.604866
TAGACTG40350.012.5904565
TACACTG48750.012.5438255
CTAGGCT44300.012.5296674
TACCGCC28200.012.50197
TATACAG77150.012.4381425