FastQCFastQC Report
Wed 16 Nov 2016
SRR1945595.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945595.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39001722
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG202050.015.5462685
TATACCG128800.014.8204295
CTATACT215200.014.283954
CATACAC1216800.013.8794863
TATACAG189750.013.8146885
ACACATG1189700.013.3483036
TCTATAC254900.013.1491663
ACATGAC896650.013.1082638
GTATAGA276850.012.862441
GTGTATG1085100.012.8299421
GTATATA584600.012.8024191
TCATACA1310500.012.6377672
CATGACA921800.012.6338759
CACATGA1144950.012.590257
ATCATAC1281050.012.4389211
GTATTAT322600.012.425061
TAATACT324900.012.2745834
TATATAC596450.012.2155483
GTATAGG139400.012.1306451
TATACTA377400.012.0630975