Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945644.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 62332378 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 32670 | 0.0 | 26.17406 | 3 |
GATCGGA | 36475 | 0.0 | 23.895756 | 1 |
AGAGCAC | 33485 | 0.0 | 22.400888 | 8 |
GAGCACA | 33500 | 0.0 | 22.221506 | 9 |
ATCGGAA | 40905 | 0.0 | 21.364393 | 2 |
CGGAAGA | 41665 | 0.0 | 20.82783 | 4 |
GCACACG | 21000 | 0.0 | 17.321333 | 10-11 |
ACGTCTG | 21555 | 0.0 | 16.613636 | 14-15 |
GAAGAGC | 52615 | 0.0 | 16.445591 | 6 |
ACTGACC | 22350 | 0.0 | 15.675821 | 32-33 |
CGTCTGA | 23615 | 0.0 | 15.441878 | 16-17 |
ACACGTC | 24720 | 0.0 | 14.629174 | 12-13 |
CACGTCT | 25340 | 0.0 | 14.363907 | 14-15 |
CACTGAC | 25060 | 0.0 | 14.280679 | 30-31 |
CACACGT | 25485 | 0.0 | 14.245363 | 12-13 |
CCAGTCA | 25565 | 0.0 | 14.043819 | 26-27 |
TCCAGTC | 25315 | 0.0 | 13.950624 | 24-25 |
CTCCAGT | 26705 | 0.0 | 13.356473 | 24-25 |
ACTCCAG | 27730 | 0.0 | 13.269849 | 22-23 |
CAGTCAC | 26670 | 0.0 | 13.197647 | 26-27 |