FastQCFastQC Report
Wed 16 Nov 2016
SRR1945512.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945512.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30197542
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG150750.013.8107395
CTATACT158450.012.7836694
CTAGGCT69100.011.9022894
TATACCG105250.011.7436785
TCTATAC195000.011.4246713
GTATTAG209800.011.1409841
GTATATA421000.011.0257391
ACAGTGC60200.010.9296718
GTATAGG113400.010.8657791
CATACAC628550.010.5209333
ATACCGT111350.010.5094596
GTATAGA199850.010.4719721
TAGGCCG40550.010.4309085
TAGACTG69800.010.3016435
TATACAG176150.010.2718495
GTATTAT298800.010.1834821
ACATGAC468250.010.0770048
TAATACT290050.010.0135044
GTGTATG607000.09.956051
GTACTAG111500.09.9120991