FastQCFastQC Report
Wed 16 Nov 2016
SRR1945598.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945598.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43671866
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG223300.016.3141175
TATACCG137000.015.7320845
CATACAC1475300.014.9554313
ACATGAC1130300.014.61650858
ACACATG1456500.014.4440626
CACATGA1403700.014.0488667
CATGACA1167850.013.9124159
CTATACT230300.013.7947424
TCATACA1580700.013.7529952
ATCATAC1511200.013.507951
TATACAG210350.013.5054325
TCTATAC269600.013.2796963
GTGTATG1306600.013.2195921
TACCGTG108600.013.2033587
TACACAT1728250.013.04136855
TAGGCTG130650.012.7240765
GTATAGA298000.012.6252711
GTCGCGC19750.012.4784268
ATACTGT215000.012.4422846
ATACACA1874450.012.3516754