Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945752.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34992890 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 339841 | 0.9711715722822551 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 8525 | 0.0 | 26.102463 | 56 |
GCCGTAT | 8700 | 0.0 | 25.55677 | 57 |
GGTCGCC | 10130 | 0.0 | 24.528114 | 53 |
CCGTATC | 9800 | 0.0 | 22.6891 | 58 |
TGGTCGC | 11380 | 0.0 | 21.277702 | 52 |
TATGCCG | 9260 | 0.0 | 19.36646 | 53 |
CGTATCA | 11500 | 0.0 | 18.9828 | 59 |
TGCCGTC | 9545 | 0.0 | 18.93664 | 55 |
ATGCCGT | 9480 | 0.0 | 18.658884 | 54 |
CGTATGC | 10285 | 0.0 | 18.415115 | 51 |
GGCTGAT | 12385 | 0.0 | 17.982077 | 2 |
GTATGCC | 10485 | 0.0 | 17.738844 | 52 |
ATCAGCC | 12465 | 0.0 | 17.586626 | 2 |
GGTGGTC | 14745 | 0.0 | 16.801735 | 50 |
GCCGTCT | 10510 | 0.0 | 16.630802 | 56 |
CGAGATC | 19780 | 0.0 | 16.563723 | 18 |
CTCGGTG | 16135 | 0.0 | 16.13129 | 47 |
TCGGTGG | 16590 | 0.0 | 15.731823 | 48 |
GTCGCCG | 16100 | 0.0 | 15.390131 | 54 |
CGGCATT | 6230 | 0.0 | 15.206063 | 1 |