FastQCFastQC Report
Wed 16 Nov 2016
SRR1945578.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945578.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54977318
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG205250.019.0808585
CCGTGAG154550.018.3818119
TACCGTG149900.017.8461577
ACCGTGA195150.016.8079438
TATACTG284100.016.340235
ATACCGT180700.016.192996
TCTATAC364700.015.7637583
CTATACT296950.014.3051974
CATACAC1730300.014.1811313
CTAGTAC204350.014.1434033
ACATGAC1301800.013.8649168
GTATAGA408750.013.7915421
GACCGTG88500.013.772027
ACACATG1705100.013.6917786
TATACAG270600.013.4792665
CACATGA1660400.013.2642537
CATGACA1352700.013.1873869
TCATACA1872900.012.9314992
GTGTATG1556650.012.8704341
CTATACC301800.012.8429774