Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945616.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 62726892 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 1142114 | 1.8207725005728006 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 477024 | 0.76047765924701 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG | 91514 | 0.14589276956365063 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 235330 | 0.0 | 57.975273 | 43 |
ATGCCGT | 212200 | 0.0 | 57.457428 | 44 |
CGTATGC | 240210 | 0.0 | 57.426693 | 41 |
GTATGCC | 239870 | 0.0 | 57.377705 | 42 |
TGCCGTC | 209000 | 0.0 | 57.22718 | 45 |
GCCGTCT | 198940 | 0.0 | 57.08734 | 46 |
TCGTATG | 254785 | 0.0 | 55.987873 | 40 |
GAGACCG | 295630 | 0.0 | 55.63883 | 30 |
CCGATAT | 195680 | 0.0 | 55.608795 | 34 |
GACCGAT | 289795 | 0.0 | 55.593483 | 32 |
CGAGACC | 299510 | 0.0 | 55.376984 | 29 |
TATCGTA | 179925 | 0.0 | 55.36678 | 38 |
AGACCGA | 298195 | 0.0 | 54.99228 | 31 |
AATGCCG | 311195 | 0.0 | 54.806526 | 24 |
ACCGATA | 200780 | 0.0 | 54.49473 | 33 |
CCGTCTT | 207380 | 0.0 | 54.42244 | 47 |
ATATCGT | 186915 | 0.0 | 54.246956 | 37 |
CGATATC | 200550 | 0.0 | 54.098797 | 35 |
TGCCGAG | 314370 | 0.0 | 53.77822 | 26 |
GATATCG | 200810 | 0.0 | 53.65463 | 36 |