FastQCFastQC Report
Wed 16 Nov 2016
SRR1945589.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945589.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75458928
Sequences flagged as poor quality0
Sequence length100
%GC38

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG184550.018.43997646-47
CACGCCA389050.018.36631830-31
GTCACGC397500.017.9231328-29
CGTATGC202600.017.30521444-45
CGCCAAT414350.017.1141832-33
GTATGCC213600.017.01910244-45
TCACGCC408000.016.5630330-31
TGCCGTC184100.016.46938548-49
ATGCCGT194750.016.02604946-47
GCCGTCT190050.015.96613748-49
AGTCACG434700.015.88662628-29
GAGCACA898500.015.5373599
ACGCCAA458650.015.15890232-33
AGAGCAC929450.015.0401988
CAGTCAC532200.013.65161126-27
GCCAATA516250.013.38934-35
TATCTCG399400.013.02439138-39
TCCAGTC569100.012.78047324-25
CTCGTAT297350.012.73724742-43
CCAGTCA552900.012.54978226-27