FastQCFastQC Report
Wed 16 Nov 2016
SRR1945762.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945762.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42622856
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2599140.6097995873387744No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC1970010.46219568205377887No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT94850.030.6885681
TATGCCG82500.029.94217163
ATGCCGT92800.026.05343864
CGTATGC98400.025.74141161
GCCGTAT74650.025.72459667
TGCCGTC90450.025.6455465
GGTCGCC74000.025.56878963
CGCCGTA73150.025.2929266
GTATGCC97700.025.28322262
GCCGTCT93500.024.51012266
CCGAGAT240050.023.62975117
CGAGATC254000.022.29017318
TCGTATG137850.020.1603660
CCTGCTG128550.020.0301958
GGCATTC142750.019.9096372
TGGTCGC90850.019.5147762
CCGTATC92450.019.48429968
GCTGAAC134700.018.6215611
AACCGAG139850.018.33280415
GCATTCC159150.018.1402023