Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945630.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 64949128 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 927764 | 1.428447199475873 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 473564 | 0.7291306512998912 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 268255 | 0.0 | 60.03173 | 9 |
GCGGTTC | 266910 | 0.0 | 59.571472 | 11 |
AGCGGTT | 268465 | 0.0 | 59.402336 | 10 |
AGAGCGG | 280525 | 0.0 | 58.871693 | 8 |
TATGCCG | 211965 | 0.0 | 56.72038 | 43 |
GTTCAGC | 273900 | 0.0 | 56.6395 | 14 |
CGTATGC | 217595 | 0.0 | 56.35214 | 41 |
AATGCCG | 256045 | 0.0 | 56.247482 | 24 |
CAGCAGG | 271310 | 0.0 | 56.198654 | 17 |
CGGTTCA | 280935 | 0.0 | 56.132023 | 12 |
GTATGCC | 216915 | 0.0 | 56.1213 | 42 |
ATGCCGT | 191860 | 0.0 | 56.118397 | 44 |
TGCCGTC | 188970 | 0.0 | 56.00582 | 45 |
GAGACCG | 251670 | 0.0 | 55.974255 | 30 |
GGTTCAG | 280425 | 0.0 | 55.932854 | 13 |
CGAGACC | 254240 | 0.0 | 55.762142 | 29 |
GCCGTCT | 179080 | 0.0 | 55.535313 | 46 |
CAGGAAT | 268030 | 0.0 | 55.252613 | 20 |
GACCGAT | 251175 | 0.0 | 55.087196 | 32 |
TCGTATG | 229690 | 0.0 | 55.02336 | 40 |