Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945541.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34475168 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 16870 | 0.0 | 13.376174 | 5 |
CTAGTAC | 12255 | 0.0 | 12.23986 | 3 |
TAGACTG | 7845 | 0.0 | 11.985132 | 5 |
GTATAGA | 23485 | 0.0 | 11.9464245 | 1 |
GTATTAG | 25570 | 0.0 | 11.874388 | 1 |
CTATACT | 18005 | 0.0 | 11.672968 | 4 |
ACTGTGC | 6185 | 0.0 | 11.09367 | 8 |
TCTATAC | 22330 | 0.0 | 10.971046 | 3 |
TATACCG | 12270 | 0.0 | 10.957897 | 5 |
TAGTACT | 20570 | 0.0 | 10.7888365 | 4 |
TAATACT | 34130 | 0.0 | 10.607703 | 4 |
GTATATA | 47500 | 0.0 | 10.41577 | 1 |
TATACAG | 20265 | 0.0 | 10.39291 | 5 |
CCTAGTA | 13240 | 0.0 | 10.228719 | 2 |
GTGTATG | 52370 | 0.0 | 10.211229 | 1 |
ATACCGT | 14335 | 0.0 | 10.163526 | 6 |
TACCGTG | 8555 | 0.0 | 9.668235 | 7 |
ATACTGT | 22235 | 0.0 | 9.659606 | 6 |
GTATAGG | 13220 | 0.0 | 9.614232 | 1 |
CTAATAC | 25310 | 0.0 | 9.605002 | 3 |