Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945667.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 77164912 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCACGC | 10940 | 0.0 | 8.440229 | 28-29 |
TCGGAAG | 34970 | 0.0 | 8.102984 | 3 |
TATGCCG | 11605 | 0.0 | 7.49224 | 46-47 |
ATGCCGT | 13835 | 0.0 | 7.0319586 | 46-47 |
GATCGGA | 43875 | 0.0 | 6.909138 | 1 |
GGGCGCC | 4710 | 0.0 | 6.886675 | 42-43 |
GCACACG | 13535 | 0.0 | 6.8568177 | 10-11 |
GCCGTCT | 14745 | 0.0 | 6.6317053 | 48-49 |
CACGCCA | 14440 | 0.0 | 6.4925785 | 30-31 |
CGGAAGA | 46060 | 0.0 | 6.4883165 | 4 |
ATCGGAA | 46410 | 0.0 | 6.4497523 | 2 |
GAGCGTC | 14355 | 0.0 | 6.383266 | 9 |
TGCCGTC | 13565 | 0.0 | 6.359499 | 48-49 |
CGTATGC | 13735 | 0.0 | 6.313383 | 44-45 |
GTATGCC | 14980 | 0.0 | 6.212234 | 44-45 |
TCACGCC | 14210 | 0.0 | 6.1842785 | 30-31 |
GAGCACA | 29530 | 0.0 | 5.9354944 | 9 |
ACGTCTG | 16665 | 0.0 | 5.8367624 | 14-15 |
AGAGCAC | 32905 | 0.0 | 5.4552145 | 8 |
AGTCACG | 17160 | 0.0 | 5.3808913 | 28-29 |