FastQCFastQC Report
Wed 16 Nov 2016
SRR1945732.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945732.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39525214
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG203000.016.3410635
CATACAC1152250.015.4758623
CTATACT220700.014.8366634
ACACATG1153650.014.6482746
GACCGTG59600.014.5674667
ACATGAC853800.014.3067768
TCATACA1257300.014.0021492
CACATGA1106750.013.9992927
TCTATAC253050.013.8629533
CATGACA876400.013.720919
ATCATAC1230950.013.6613051
TATACAG198250.013.54865555
GTGTATG993500.013.380981
TATACCG120800.013.3782235
TAGACCG94100.013.2255375
TACACAT1452200.012.8487065
TATGAGC168950.012.67006494
GTATAGA265350.012.633281
GCGCGCC21950.012.460119
CCGTGAG87450.012.4074379