FastQCFastQC Report
Wed 16 Nov 2016
SRR1945484.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945484.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54823072
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT103850.025.0964321
ACCGCTC126350.023.438116
GCTGAAC182050.022.27992411
CCGCTCT136000.021.69598217
GAACCGC142500.021.17563214
CCTGCTG196250.020.9873818
AACCGCT156150.019.41514415
GGCATTC202800.019.320282
ATTCCTG210550.019.3097935
TGAACCG213050.018.98845113
GCATTCC218300.018.5735573
TTCCTGC231600.017.7513526
CTTCCGA172400.017.19792422
CTGAACC240150.017.1515112
CGCTCTT182500.016.22190518
CGATCAG148500.015.97382726
CGCCGTA63350.015.7087466
CGTGTAG155250.015.2635246
CTGCTGA279850.015.0559919
GAGACCG163450.014.6634261