Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945639.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 105005694 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 24840 | 0.0 | 17.624477 | 1 |
GGCATTC | 42610 | 0.0 | 10.899295 | 2 |
CCTGCTG | 39800 | 0.0 | 10.864139 | 8 |
GCATTCC | 43090 | 0.0 | 10.701353 | 3 |
ATTCCTG | 43190 | 0.0 | 10.435968 | 5 |
TTCCTGC | 50375 | 0.0 | 9.021977 | 6 |
CGCCGTA | 19640 | 0.0 | 7.492012 | 66-67 |
CTGCTGA | 62085 | 0.0 | 7.259079 | 9 |
TCCTGCT | 63170 | 0.0 | 7.209472 | 7 |
GCCGTAT | 19990 | 0.0 | 7.09039 | 66-67 |
CGAGATC | 51185 | 0.0 | 7.0374217 | 18-19 |
TATGCCG | 22685 | 0.0 | 6.1547923 | 62-63 |
GCTGAAC | 37615 | 0.0 | 6.0469155 | 10-11 |
GGTCGCC | 25815 | 0.0 | 5.9912786 | 62-63 |
CCGTATC | 25115 | 0.0 | 5.8953123 | 68-69 |
ATGCCGT | 22635 | 0.0 | 5.794599 | 64-65 |
CAGCAGG | 65535 | 0.0 | 5.4647717 | 6 |
CGTATGC | 26785 | 0.0 | 5.449119 | 60-61 |
CATTCCT | 97160 | 0.0 | 5.422624 | 4 |
GTTCAGC | 66625 | 0.0 | 5.3619475 | 3 |