FastQCFastQC Report
Wed 16 Nov 2016
SRR1945441.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945441.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56863358
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG212450.017.865345
TATACTG295600.015.55919555
TACCGTG159350.015.2821117
TCTATAC387650.015.1722373
CCGTGAG156300.014.7686599
ATACCGT198900.014.6346316
CATACAC1640650.014.342383
ACATGAC1285350.014.1484568
CATGACA1307850.013.775119
ACACATG1603100.013.686366
TATACAG275950.013.5646765
ACCGTGA189300.013.4679518
CTATACT296900.013.4040174
GTATAGA420200.013.3744221
CACATGA1578800.013.2191947
TCATACA1788650.012.9889312
GTGTATG1497500.012.8452881
ATCATAC1799550.012.6051851
CTAGTAC203400.012.3658633
GTATATA864000.012.3504141