FastQCFastQC Report
Wed 16 Nov 2016
SRR1945712.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945712.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences148553582
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG2863700.19277219447996885Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT1393150.035.3934489
AATGCCG1166750.035.28597624
GCGGTTC1425350.034.09345211
AGCGGTT1445900.034.01999710
GAGACCG599700.033.93716461
CGAGACC608050.033.83197860
AGAGCGG1496000.033.32928
GTTCAGC1456450.032.8445314
CGGCATT402350.032.5410351
CAGCAGG1458000.032.5321217
ACCGCGC145400.031.5993516
TGCCGAG1224000.031.4096426
ATGCCGA1262750.031.11974725
CGGTTCA1567950.031.0886212
GAATGCC1387400.030.8657623
CGAGATC810800.030.33249929
GGTTCAG1617400.030.12731413
GGAATGC1450450.029.88062322
CAGGAAT1487050.029.79224420
AAGAGCG1785800.028.7018137