Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945700.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31457070 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGTC | 13380 | 0.0 | 20.553848 | 9 |
CGCCGTA | 6935 | 0.0 | 20.002869 | 46-47 |
GCCGTAT | 7420 | 0.0 | 18.85172 | 46-47 |
GGTCGCC | 7425 | 0.0 | 18.462597 | 42-43 |
TCGGAAG | 30615 | 0.0 | 18.428877 | 3 |
TATGCCG | 7410 | 0.0 | 18.282358 | 46-47 |
ATGCCGT | 7960 | 0.0 | 17.427122 | 46-47 |
AGAGCGT | 16455 | 0.0 | 16.8805 | 8 |
CGTATGC | 8185 | 0.0 | 16.87192 | 44-45 |
GCCGTCT | 8350 | 0.0 | 16.833485 | 48-49 |
TGCCGTC | 8125 | 0.0 | 16.814339 | 48-49 |
CGGAAGA | 34140 | 0.0 | 16.376257 | 4 |
GATCGGA | 34290 | 0.0 | 16.152655 | 1 |
GTATGCC | 8750 | 0.0 | 16.022413 | 44-45 |
ATCGGAA | 34865 | 0.0 | 15.953139 | 2 |
CCGTATC | 8715 | 0.0 | 15.862322 | 48-49 |
AAGAGCG | 19055 | 0.0 | 15.162607 | 7 |
GAGCACA | 18700 | 0.0 | 14.880928 | 9 |
AGAGCAC | 19905 | 0.0 | 14.001545 | 8 |
TGGTCGC | 8770 | 0.0 | 13.927368 | 42-43 |