FastQCFastQC Report
Wed 16 Nov 2016
SRR1945724.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945724.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44601114
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2677170.6002473391135477No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC1846610.41402777518068273No Hit
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG569790.12775241443520893Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT119900.035.1538121
TATGCCG92100.032.16415463
GGTCGCC79800.030.06776863
CGTATGC103300.029.48283861
GTATGCC105850.028.38424562
CGCCGTA79850.028.2890766
ATGCCGT99550.027.81447664
GCCGTAT83100.027.69373967
TGCCGTC93800.027.6799265
CCGAGAT302950.026.73997517
GCCGTCT98700.025.6669366
CGAGATC317050.025.34036618
GGCATTC173850.023.219612
CCTGCTG156700.022.877948
GCTGAAC153250.022.4591511
TGGTCGC98700.022.34913462
CCGTATC97250.022.29268868
TCGTATG159350.021.85271360
AACCGAG164950.021.75370815
GCATTCC188650.021.6717113