Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945710.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 59670226 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 93259 | 0.15629067669359925 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 20235 | 0.0 | 39.786575 | 56 |
GCCGTAT | 20740 | 0.0 | 38.884174 | 57 |
GGTCGCC | 23170 | 0.0 | 38.64482 | 53 |
TGGTCGC | 24690 | 0.0 | 35.68598 | 52 |
CCGTATC | 22780 | 0.0 | 34.771748 | 58 |
GGCTGAT | 26100 | 0.0 | 30.866413 | 2 |
CGTATCA | 24965 | 0.0 | 30.84129 | 59 |
TCGGTGG | 31330 | 0.0 | 30.570034 | 48 |
CTCGGTG | 31405 | 0.0 | 30.393661 | 47 |
ATCAGCC | 25940 | 0.0 | 30.152887 | 2 |
GGTGGTC | 31050 | 0.0 | 28.78241 | 50 |
GTCGCCG | 31685 | 0.0 | 28.40283 | 54 |
TATGCCG | 22705 | 0.0 | 27.93081 | 53 |
GAGTGTA | 35850 | 0.0 | 26.776533 | 37 |
CGGTGGT | 35185 | 0.0 | 25.906672 | 49 |
CAGCCAA | 39720 | 0.0 | 25.674072 | 4 |
CGTATGC | 25795 | 0.0 | 25.591621 | 51 |
TGGCTGA | 32175 | 0.0 | 25.232218 | 1 |
TCGCCGT | 32135 | 0.0 | 25.106049 | 55 |
AGTGTAG | 38340 | 0.0 | 25.092 | 38 |