Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945586.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 50390542 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 136467 | 0.2708186786321925 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 77018 | 0.1528421742318231 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 45475 | 0.0 | 43.771088 | 43 |
CGTATGC | 47645 | 0.0 | 42.796738 | 41 |
GTATGCC | 47520 | 0.0 | 42.70794 | 42 |
GAGACCG | 66800 | 0.0 | 42.39014 | 30 |
ATGCCGT | 40675 | 0.0 | 42.196423 | 44 |
TGCCGTC | 39500 | 0.0 | 42.047123 | 45 |
CGAGACC | 69940 | 0.0 | 41.177242 | 29 |
GCCGTCT | 38490 | 0.0 | 41.097107 | 46 |
GAGCGGT | 82690 | 0.0 | 40.60717 | 9 |
TCGTATG | 53520 | 0.0 | 40.514458 | 40 |
GCGGTTC | 81325 | 0.0 | 40.434452 | 11 |
AGCGGTT | 83170 | 0.0 | 39.85496 | 10 |
AATGCCG | 74920 | 0.0 | 39.737434 | 24 |
AGACCGA | 71825 | 0.0 | 39.14081 | 31 |
GACCGAT | 68920 | 0.0 | 39.057907 | 32 |
CCGATAT | 42930 | 0.0 | 38.246593 | 34 |
AGAGCGG | 89950 | 0.0 | 38.14478 | 8 |
TGCCGAG | 77225 | 0.0 | 38.082146 | 26 |
TATCGTA | 37690 | 0.0 | 37.61797 | 38 |
ATGCCGA | 80100 | 0.0 | 37.046627 | 25 |