Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945437.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37838926 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 19550 | 0.0 | 16.709732 | 5 |
CTATACT | 21235 | 0.0 | 14.640073 | 4 |
CATACAC | 102940 | 0.0 | 14.319748 | 3 |
GTCGCGC | 1560 | 0.0 | 14.311471 | 8 |
TATACCG | 12275 | 0.0 | 14.25561 | 5 |
ACATGAC | 90210 | 0.0 | 13.889028 | 8 |
TCTATAC | 24710 | 0.0 | 13.581562 | 3 |
ACACATG | 106775 | 0.0 | 13.426946 | 6 |
CATGACA | 91955 | 0.0 | 13.343592 | 9 |
CACATGA | 103500 | 0.0 | 13.07539 | 7 |
TATACAG | 18320 | 0.0 | 12.925977 | 5 |
GTATAGA | 26460 | 0.0 | 12.900518 | 1 |
TCATACA | 112985 | 0.0 | 12.872292 | 2 |
GTGTATG | 92310 | 0.0 | 12.839726 | 1 |
TACCGTG | 9125 | 0.0 | 12.767132 | 7 |
GTATAGG | 12560 | 0.0 | 12.607279 | 1 |
TATGAGC | 15300 | 0.0 | 12.495813 | 94 |
ATCATAC | 112280 | 0.0 | 12.443492 | 1 |
CCGTGAG | 8690 | 0.0 | 12.074785 | 9 |
GACCGTG | 5100 | 0.0 | 12.027618 | 7 |