Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945604.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41126698 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 249384 | 0.6063798265545169 | No Hit |
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC | 178588 | 0.4342386057835229 | No Hit |
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 65499 | 0.15926150939713177 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 12580 | 0.0 | 39.192005 | 1 |
TATGCCG | 10710 | 0.0 | 36.762466 | 63 |
ATGCCGT | 10990 | 0.0 | 34.888447 | 64 |
TGCCGTC | 10630 | 0.0 | 34.748714 | 65 |
CGTATGC | 11905 | 0.0 | 34.115204 | 61 |
GCCGTAT | 8460 | 0.0 | 33.673332 | 67 |
GTATGCC | 11860 | 0.0 | 33.283363 | 62 |
CGCCGTA | 8450 | 0.0 | 32.962795 | 66 |
GCCGTCT | 11225 | 0.0 | 32.470535 | 66 |
GGTCGCC | 9185 | 0.0 | 32.292282 | 63 |
CCGAGAT | 30660 | 0.0 | 30.702705 | 17 |
CGAGATC | 33250 | 0.0 | 28.278103 | 18 |
CCTGCTG | 15720 | 0.0 | 27.828312 | 8 |
GCTGAAC | 15640 | 0.0 | 27.415192 | 11 |
CCGTATC | 9950 | 0.0 | 27.258661 | 68 |
AACCGAG | 16280 | 0.0 | 27.009321 | 15 |
TCGTATG | 16820 | 0.0 | 26.2694 | 60 |
GGCATTC | 18245 | 0.0 | 26.084417 | 2 |
ATTCCTG | 17385 | 0.0 | 26.047417 | 5 |
TGGTCGC | 10490 | 0.0 | 25.750467 | 62 |