Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945626.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 45290744 |
Sequences flagged as poor quality | 0 |
Sequence length | 110 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACCCTCG | 16255 | 0.0 | 28.843878 | 4 |
CGGCATT | 12320 | 0.0 | 26.95573 | 1 |
GGAACCC | 19995 | 0.0 | 23.675394 | 1 |
CCCTCGA | 21815 | 0.0 | 22.255266 | 5 |
AACCCTC | 24865 | 0.0 | 19.29089 | 3 |
CCTGCTG | 18005 | 0.0 | 18.220207 | 8 |
GGCATTC | 19865 | 0.0 | 17.610388 | 2 |
GCATTCC | 20865 | 0.0 | 16.346722 | 3 |
CCTCGAC | 30995 | 0.0 | 16.025486 | 6 |
GAACCCT | 30865 | 0.0 | 15.907954 | 2 |
ATTCCTG | 21250 | 0.0 | 15.716403 | 5 |
TTCCTGC | 23220 | 0.0 | 14.506091 | 6 |
GGGCGAT | 18420 | 0.0 | 14.2300005 | 26-27 |
CTGCTGA | 26595 | 0.0 | 12.898906 | 9 |
TCCTGCT | 28115 | 0.0 | 12.035632 | 7 |
CTCGACC | 50290 | 0.0 | 11.286368 | 7 |
CGGGTTC | 22075 | 0.0 | 10.718985 | 42-43 |
TATCGGG | 26370 | 0.0 | 10.4487915 | 40-41 |
GCTTGGT | 45465 | 0.0 | 10.356276 | 9 |
CCGAGAT | 32205 | 0.0 | 10.206361 | 16-17 |