FastQCFastQC Report
Wed 16 Nov 2016
SRR1945709.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945709.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80809264
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC106200.015.38265153
CGCCGTA98700.014.7811956
GCCGTAT106200.013.77065857
TGGTCGC130250.012.48770452
TATGCCG94600.011.20444553
CCGTATC141800.010.38755558
CGTATGC110450.010.22905651
GTATGCC122750.09.28973852
GTCGCCG189900.09.15618254
CGTGTAG199550.09.12025825
CTCGGTG203350.09.01377747
TCGGTGG204450.08.84501248
GAGACCG211300.08.51642440
ATGCCGT111000.08.44685154
CGAGACC219400.08.44161739
TGCCGTC107600.08.35633755
CGTATCA177000.08.30199459
GGTGGTC223400.07.85972250
GCGTCGT237450.07.75613221
GTCGTGT239300.07.751797723