FastQCFastQC Report
Wed 16 Nov 2016
SRR1945577.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945577.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52578800
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG186050.018.4977825
TACCGTG143100.016.753477
ATACCGT171250.016.3022696
TATACTG269750.016.147045
TCTATAC345900.015.7403153
CCGTGAG129150.015.7177919
CATACAC1985200.014.52327253
ACATGAC1349450.014.2359788
ACACATG1889200.013.9496676
TATACAG255600.013.885215
GTATAGA378650.013.7997011
CTATACT283750.013.7394924
ACCGTGA167750.013.7306538
GTATAGG187350.013.7063871
CACATGA1847550.013.6407977
CATGACA1392400.013.6197589
CTAGTAC169850.013.5871823
TCATACA2096100.013.4697152
GTGTATG1778300.013.1822961
ATCATAC2041650.013.1143771