FastQCFastQC Report
Wed 16 Nov 2016
SRR1945649.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945649.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57891500
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT5519120.9533558467132481Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT1842870.31833170672723976Illumina Paired End PCR Primer 2 (100% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG705400.12184863062798511Illumina Paired End PCR Primer 2 (97% over 49bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTTC1902400.056.7055811
GAGCGGT1943450.056.502929
AGCGGTT1934800.056.05444710
TATGCCG1192450.055.26867343
AATGCCG1812000.054.7563724
CGTATGC1231600.054.7342441
GAGACCG1739300.054.5828430
CGAGACC1756050.054.53199829
AGAGCGG2050850.054.3789258
GTATGCC1230750.054.2865542
ATGCCGT1029950.054.07076344
GTTCAGC1952550.054.05023214
TGCCGTC991700.053.97751245
CAGCAGG1930600.053.82407417
GACCGAT1686800.053.73719432
TGCCGAG1832200.053.62713226
AGACCGA1766300.053.46889531
CGGTTCA2006650.053.35708612
CCGATAT1190150.053.3380334
ATGCCGA1858100.053.21278825