FastQCFastQC Report
Wed 16 Nov 2016
SRR1945580.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945580.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42436654
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG217600.016.3503345
TATACCG137800.015.1205895
CTATACT230900.014.981574
CATACAC1345850.014.7492883
ACATGAC1074600.014.5861288
TAGGCTG115800.014.3172035
ACACATG1345450.014.0876936
CATGACA1099400.014.0694959
TCTATAC270450.014.0167513
TATACAG213700.013.9228645
CACATGA1311450.013.8891557
TCATACA1467800.013.4295472
GTCGCGC18700.013.4187938
ATCATAC1440900.013.3394951
GTGTATG1218850.013.1377311
GTATATA655000.012.9510791
CTAGGCT109050.012.6557834
TACACAT1658400.012.3992035
ATACTGT213450.012.3017966
GTATAGG153150.012.1822631