Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945686.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 75628272 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 10350 | 0.0 | 17.513454 | 53 |
CGCCGTA | 10535 | 0.0 | 16.27779 | 56 |
GCCGTAT | 10955 | 0.0 | 15.461992 | 57 |
TATGCCG | 9640 | 0.0 | 14.229559 | 53 |
TGGTCGC | 12885 | 0.0 | 14.011872 | 52 |
CGTGTAG | 15890 | 0.0 | 12.490662 | 25 |
AGCGTCG | 15965 | 0.0 | 12.47447 | 20 |
CGTATGC | 11115 | 0.0 | 12.369894 | 51 |
GAGCGTC | 16350 | 0.0 | 12.223415 | 19 |
GCGTCGT | 16640 | 0.0 | 11.926132 | 21 |
GTCGTGT | 18395 | 0.0 | 11.208071 | 23 |
ATGCCGT | 10585 | 0.0 | 11.075942 | 54 |
GTATGCC | 12605 | 0.0 | 10.936648 | 52 |
GTCGCCG | 17660 | 0.0 | 10.681316 | 54 |
CCGTATC | 16225 | 0.0 | 10.676696 | 58 |
TCGGTGG | 19045 | 0.0 | 10.470662 | 48 |
CGTATCA | 16880 | 0.0 | 10.428054 | 59 |
CTCGGTG | 19095 | 0.0 | 10.260398 | 47 |
CGTCGTG | 19585 | 0.0 | 10.204132 | 22 |
GAGACCG | 19590 | 0.0 | 10.1348915 | 40 |