Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945678.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 75504612 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 10210 | 0.0 | 18.474815 | 56 |
GCCGTAT | 10620 | 0.0 | 18.09111 | 57 |
TATGCCG | 10590 | 0.0 | 15.266347 | 53 |
GGTCGCC | 14420 | 0.0 | 15.191415 | 53 |
CCGTATC | 13695 | 0.0 | 14.0541935 | 58 |
CGTATGC | 12020 | 0.0 | 13.913558 | 51 |
TGGTCGC | 15995 | 0.0 | 13.409244 | 52 |
CGTGTAG | 18835 | 0.0 | 13.046243 | 25 |
GTATGCC | 13055 | 0.0 | 12.382067 | 52 |
ATGCCGT | 11425 | 0.0 | 12.129771 | 54 |
GTCGTGT | 20610 | 0.0 | 11.870981 | 23 |
GCGTCGT | 21885 | 0.0 | 11.37066 | 21 |
AGCGTCG | 21780 | 0.0 | 11.36116 | 20 |
GAGCGTC | 22185 | 0.0 | 11.169466 | 19 |
CTCGGTG | 22350 | 0.0 | 11.005269 | 47 |
TCGGTGG | 23295 | 0.0 | 10.663387 | 48 |
TGCCGTC | 12510 | 0.0 | 10.602295 | 55 |
CGTATCA | 18290 | 0.0 | 10.504313 | 59 |
GCCGTCT | 11880 | 0.0 | 10.369153 | 56 |
ATCAGCC | 19855 | 0.0 | 10.274261 | 2 |