Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945745.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 79816412 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 77555 | 0.0 | 19.497938 | 4 |
AGAGCGT | 40920 | 0.0 | 19.046509 | 9 |
CGGAAGA | 88530 | 0.0 | 17.217154 | 5 |
GATCGGA | 88920 | 0.0 | 17.163656 | 2 |
AAGAGCG | 47145 | 0.0 | 16.937521 | 8 |
ATCGGAA | 94350 | 0.0 | 16.27445 | 3 |
GGTCGCC | 24625 | 0.0 | 15.29105 | 44-45 |
GAAGAGC | 103835 | 0.0 | 14.891621 | 7 |
CGTCCGC | 24040 | 0.0 | 14.284655 | 34-35 |
CGCCGTA | 25390 | 0.0 | 14.265841 | 46-47 |
AGAGCAC | 53640 | 0.0 | 13.974052 | 9 |
TGGTCGC | 27750 | 0.0 | 13.399331 | 42-43 |
GTCCGCA | 25685 | 0.0 | 13.1067505 | 34-35 |
GAGCGTC | 31840 | 0.0 | 12.56819 | 10-11 |
CCGCACA | 26440 | 0.0 | 12.532604 | 36-37 |
ACGTCCG | 27110 | 0.0 | 12.526596 | 32-33 |
TCCGCAC | 28070 | 0.0 | 12.253448 | 36-37 |
TATGCCG | 24540 | 0.0 | 12.231581 | 48-49 |
GGAAGAG | 129940 | 0.0 | 12.165466 | 6 |
TGCCGTC | 24450 | 0.0 | 12.080731 | 50-51 |