FastQCFastQC Report
Wed 16 Nov 2016
SRR1945695.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945695.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65129182
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT179300.036.577321
CGCCGTA180100.025.81587456
CCGAGAT510900.025.45456317
TATGCCG200050.025.233263
CCTGCTG237000.024.6450638
GCCGTAT191000.024.34429657
GCTGAAC235200.024.27428611
GGTCGCC204400.023.96224653
GGCATTC261150.023.2498822
ATTCCTG261200.023.1295095
CGAGATC567450.022.89824518
TGGTCGC216150.022.43259252
CGTATGC236250.022.30132961
CCGTATC206850.022.12312558
ATGCCGT194800.022.10807864
TGCCGTC196850.021.86005665
GCATTCC284950.021.7376543
AACCGAG245600.021.69340515
TTCCTGC284750.021.3254876
GTATGCC241950.021.25237862