FastQCFastQC Report
Wed 16 Nov 2016
SRR1945593.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945593.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences174942902
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT421950.024.503931
GGCATTC686000.015.2614462
CCTGCTG696600.014.3386818
ATTCCTG744350.013.9304655
GCATTCC794800.013.3368143
TTCCTGC810850.012.741266
TCCTGCT964000.010.838937
CTGCTGA989550.010.3929079
CGAGATC910950.010.2974618-19
TATGCCG373700.08.87992562-63
CGCCGTA359450.08.86628366-67
GCCGTAT362350.08.54884866-67
GGTCGCC407750.08.28248262-63
CCGAGAT1176700.08.1296116-17
GTTCAGC1126150.08.1109343
ATGCCGT388600.08.11045464-65
GCTGAAC646450.08.04896710-11
CAGCAGG1157550.07.95506956
CAGGAAT1169850.07.93972649
CGTATGC431300.07.905993560-61