FastQCFastQC Report
Wed 16 Nov 2016
SRR1945572.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945572.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32556298
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC401000.12317125245628358No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG105400.017.0494775
TATACTG157650.016.06065
TCTATAC194200.015.0223923
GTCGCGC14250.014.7805418
CTAGTAC113050.014.6669053
TACCGTG76450.014.3027757
ATACCGT90650.014.28696
CATACAC1146450.013.6771663
TATACAG162550.013.6742035
ACATGAC985550.013.4910648
CTATACT169850.013.350344
GTATAGA217250.013.1397791
ACACATG1144900.013.0850936
TAGTACT208500.012.9389124
GTATATA517800.012.857841
CACATGA1116200.012.8273477
CATGACA1033150.012.7480439
CCGTGAG72550.012.7243959
GTGTATG1033050.012.7033381
TCATACA1233300.012.649262