Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945743.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 72799152 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 53820 | 0.0 | 15.340968 | 4 |
AGAGCGT | 29500 | 0.0 | 13.7530775 | 9 |
GATCGGA | 64775 | 0.0 | 12.9484825 | 2 |
CGGAAGA | 65760 | 0.0 | 12.760959 | 5 |
GGTCGCC | 15890 | 0.0 | 12.131998 | 44-45 |
ATCGGAA | 70110 | 0.0 | 12.029568 | 3 |
AAGAGCG | 35270 | 0.0 | 11.490385 | 8 |
CGTCCCG | 16425 | 0.0 | 10.971908 | 36-37 |
GAAGAGC | 79625 | 0.0 | 10.706584 | 7 |
CGCCGTA | 17700 | 0.0 | 10.638615 | 46-47 |
CCCGTCC | 17960 | 0.0 | 10.582736 | 34-35 |
AGAGCAC | 41665 | 0.0 | 10.521051 | 9 |
TGGTCGC | 18655 | 0.0 | 10.28299 | 42-43 |
GAGCGTC | 21190 | 0.0 | 9.859336 | 10-11 |
GCACACG | 22250 | 0.0 | 9.839842 | 12-13 |
CCGTCCC | 19735 | 0.0 | 9.560003 | 34-35 |
TGCCGTC | 15205 | 0.0 | 9.503394 | 50-51 |
TATGCCG | 16125 | 0.0 | 9.256506 | 48-49 |
AGCGTCG | 22275 | 0.0 | 9.253482 | 10-11 |
GCCGTCT | 16150 | 0.0 | 9.075265 | 52-53 |