Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945585.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 17454026 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 6505 | 0.0 | 13.513637 | 5 |
ATACCGT | 5300 | 0.0 | 13.034704 | 6 |
GTATAGA | 10710 | 0.0 | 12.646822 | 1 |
TCTATAC | 10200 | 0.0 | 12.0286875 | 3 |
TATACAG | 8025 | 0.0 | 11.715556 | 5 |
TACCGTG | 5120 | 0.0 | 11.6566105 | 7 |
TATACTG | 7710 | 0.0 | 11.645467 | 5 |
CATACAC | 54955 | 0.0 | 11.582155 | 3 |
ACACATG | 55465 | 0.0 | 11.362384 | 6 |
ACATGAC | 42460 | 0.0 | 11.278114 | 8 |
CTATACT | 8140 | 0.0 | 10.972539 | 4 |
CACATGA | 53450 | 0.0 | 10.866991 | 7 |
GTATATA | 26625 | 0.0 | 10.81036 | 1 |
TAGGCTG | 5270 | 0.0 | 10.793261 | 5 |
TCATACA | 60605 | 0.0 | 10.552499 | 2 |
GTATTAG | 8680 | 0.0 | 10.511395 | 1 |
CATGACA | 44700 | 0.0 | 10.502773 | 9 |
GTACTAG | 6780 | 0.0 | 10.474316 | 1 |
TACACTG | 5540 | 0.0 | 10.436942 | 5 |
CTAGTAC | 5320 | 0.0 | 10.338373 | 3 |