FastQCFastQC Report
Wed 16 Nov 2016
SRR1945656.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945656.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57535970
Sequences flagged as poor quality0
Sequence length76
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT5671520.9857346630290581Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT1066220.18531363945024304Illumina Paired End PCR Primer 2 (100% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG787960.13695085005084645Illumina Paired End PCR Primer 2 (97% over 49bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT2141200.061.5453539
GCGGTTC2115950.061.04855311
AGCGGTT2133050.060.9599810
AGAGCGG2219500.059.8867038
GTTCAGC2167750.058.2919614
CGGTTCA2207250.058.17371712
CAGCAGG2160700.057.7119517
AATGCCG2048500.057.6423224
GGTTCAG2223800.057.50688613
TATGCCG1107650.056.56881743
CAGGAAT2151250.056.4799620
GCAGGAA2170550.056.310519
GAGACCG2017050.056.20580730
CGAGACC2032700.056.188129
GAATGCC2118800.056.15681523
CGTATGC1149750.055.8367741
TGCCGAG2096000.055.68159526
GGAATGC2172450.055.59430722
AGCAGGA2239600.055.49332418
ATGCCGA2115950.055.48848725