Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945740.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 66551082 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 55285 | 0.0 | 13.989646 | 4 |
AGAGCGT | 30135 | 0.0 | 13.402205 | 9 |
GGTCGCC | 15690 | 0.0 | 12.774596 | 44-45 |
GATCGGA | 66985 | 0.0 | 11.872102 | 2 |
CGCCGTA | 16835 | 0.0 | 11.791826 | 46-47 |
TGCCGTC | 17175 | 0.0 | 11.720066 | 48-49 |
AAGAGCG | 35460 | 0.0 | 11.712235 | 8 |
CGGAAGA | 66935 | 0.0 | 11.681679 | 5 |
TATGCCG | 17390 | 0.0 | 11.523058 | 46-47 |
ATCGGAA | 70350 | 0.0 | 11.356753 | 3 |
ATGCCGT | 18085 | 0.0 | 11.078569 | 48-49 |
GCCGTCT | 18255 | 0.0 | 10.9867525 | 50-51 |
TGGTCGC | 18145 | 0.0 | 10.765176 | 42-43 |
AGAGCAC | 40930 | 0.0 | 10.321667 | 9 |
GAAGAGC | 79785 | 0.0 | 10.061079 | 7 |
GTATGCC | 20335 | 0.0 | 9.865739 | 46-47 |
CGTATGC | 20660 | 0.0 | 9.803284 | 44-45 |
GCCGTAT | 20990 | 0.0 | 9.489547 | 48-49 |
GCACACG | 22480 | 0.0 | 9.42643 | 12-13 |
GAGCGTC | 22630 | 0.0 | 9.292143 | 10-11 |