FastQCFastQC Report
Wed 16 Nov 2016
SRR1945445.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945445.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37191472
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG121550.014.8312135
CATACAC1014450.014.6341633
TATACTG189350.014.519615
GAGCGCG20850.014.3723637
CTATACT199950.013.95994
ACACATG1012400.013.9210486
ACATGAC809450.013.8275248
TCTATAC240300.013.436363
CATGACA828600.013.3353729
CACATGA958600.013.2832587
TCATACA1114900.013.1473742
TATGAGC147650.013.068192594
TACCGTG87300.013.0219897
GTGTATG914800.012.9607471
ATCATAC1089750.012.8601721
TACACAT1207700.012.7371825
TATACAG181900.012.68245
TAGGCTG106300.012.6185165
GTATATA550150.012.5860051
ATACCGT107150.012.4296326