Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945633.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 82648878 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 16730 | 0.0 | 26.34718 | 53 |
CGCCGTA | 15720 | 0.0 | 25.614288 | 56 |
GCCGTAT | 16350 | 0.0 | 24.68436 | 57 |
TGGTCGC | 19630 | 0.0 | 22.338911 | 52 |
CGTGTAG | 22810 | 0.0 | 21.514809 | 25 |
CCGTATC | 18910 | 0.0 | 21.214579 | 58 |
GAGCGTC | 23860 | 0.0 | 20.644873 | 19 |
AGCGTCG | 24370 | 0.0 | 20.183424 | 20 |
GCGTCGT | 24670 | 0.0 | 20.007612 | 21 |
TATGCCG | 14945 | 0.0 | 19.826544 | 53 |
CGTATGC | 16485 | 0.0 | 19.23398 | 51 |
GTCGTGT | 25710 | 0.0 | 19.058332 | 23 |
GTATGCC | 17050 | 0.0 | 18.165615 | 52 |
CGTCGTG | 27535 | 0.0 | 18.038721 | 22 |
CTCGGTG | 26395 | 0.0 | 17.935032 | 47 |
TCGGTGG | 26880 | 0.0 | 17.677174 | 48 |
CGTATCA | 23300 | 0.0 | 17.399513 | 59 |
GTCGCCG | 26220 | 0.0 | 17.212694 | 54 |
TCGTGTA | 29765 | 0.0 | 16.757116 | 24 |
AGAGCGT | 29955 | 0.0 | 16.515657 | 18 |