FastQCFastQC Report
Wed 16 Nov 2016
SRR1945686.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945686.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75628272
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC103500.017.51345453
CGCCGTA105350.016.2777956
GCCGTAT109550.015.46199257
TATGCCG96400.014.22955953
TGGTCGC128850.014.01187252
CGTGTAG158900.012.49066225
AGCGTCG159650.012.4744720
CGTATGC111150.012.36989451
GAGCGTC163500.012.22341519
GCGTCGT166400.011.92613221
GTCGTGT183950.011.20807123
ATGCCGT105850.011.07594254
GTATGCC126050.010.93664852
GTCGCCG176600.010.68131654
CCGTATC162250.010.67669658
TCGGTGG190450.010.47066248
CGTATCA168800.010.42805459
CTCGGTG190950.010.26039847
CGTCGTG195850.010.20413222
GAGACCG195900.010.134891540