FastQCFastQC Report
Wed 16 Nov 2016
SRR1945720.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945720.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55700788
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG1858080.33358235434658484Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGACCG324450.042.41844661
CGAGACC327650.041.83166560
GAGCGGT788100.038.5921759
GCGGTTC788050.038.0891311
GACCGAT317300.037.81797463
AATGCCG666950.037.75054624
CGAGATC390700.037.44476729
AGAGCGG823400.037.3574948
AGACCGA362200.037.3298162
AGCGGTT819500.037.10058210
GTTCAGC803800.036.7062714
CAGCAGG804750.036.1984817
TGCCGAG661200.035.05002226
CGGTTCA869150.034.558712
GAATGCC740550.034.53219623
ATGCCGA694800.034.49230225
CCGAGAT442150.034.36766428
GGTTCAG873050.034.27606213
CAGGAAT789150.033.6352320
GCAGGAA812450.033.60061319