FastQCFastQC Report
Wed 16 Nov 2016
SRR1945494.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945494.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76427302
Sequences flagged as poor quality0
Sequence length40-101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC209250.08.44741694-95
GCCGTCT206550.08.36393294-95
GTATGCC315250.08.24117594-95
CGTATGC349250.08.17283394-95
GGTCGCC295450.08.07950794-95
TATGCCG263500.08.0559794-95
ATGCCGT233000.07.25402794-95
CGCCGTA236000.06.843672392-93
TGGTCGC347850.06.762624394-95
GTCGCCG353250.06.500513694-95
TCGTATG457600.06.243514594-95
GCCGTAT278700.06.227413794-95
CCGTATC278600.06.105056394-95
CTCGGTG580300.05.77000794-95
CTCGTAT511650.05.761392694-95
GTGGTCG452450.05.42890692-93
TCGGTGG543250.05.411515794-95
AGGCATC675300.05.32996794-95
CATCTCG645300.05.27983594-95
GGCATCT639300.05.23492592-93