Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945731.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 143013042 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 31905 | 0.0 | 23.760265 | 1 |
CGCCGTA | 20255 | 0.0 | 19.534855 | 66 |
CGAGATC | 65450 | 0.0 | 19.335085 | 18 |
TATGCCG | 22590 | 0.0 | 18.206497 | 63 |
GCCGTAT | 21880 | 0.0 | 18.052877 | 67 |
GGTCGCC | 25850 | 0.0 | 17.223896 | 63 |
ATGCCGT | 22010 | 0.0 | 16.73136 | 64 |
CGTATGC | 26700 | 0.0 | 16.237906 | 61 |
CCTGCTG | 47370 | 0.0 | 15.778943 | 8 |
GCTGAAC | 45075 | 0.0 | 15.754725 | 11 |
GAGACCG | 38775 | 0.0 | 15.261431 | 50 |
CCGAGAT | 85830 | 0.0 | 15.236886 | 17 |
CGAGACC | 39225 | 0.0 | 15.106717 | 49 |
TGGTCGC | 28750 | 0.0 | 15.09414 | 62 |
GGCATTC | 51235 | 0.0 | 15.08136 | 2 |
CCGTATC | 26325 | 0.0 | 14.792035 | 68 |
GAGATCG | 86380 | 0.0 | 14.759571 | 19 |
ATTCCTG | 52835 | 0.0 | 14.590569 | 5 |
GTATGCC | 29385 | 0.0 | 14.47022 | 62 |
GCATTCC | 54125 | 0.0 | 14.313493 | 3 |