FastQCFastQC Report
Wed 16 Nov 2016
SRR1945669.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945669.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44114582
Sequences flagged as poor quality0
Sequence length76
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGACCG114800.021.82119450
CGAGACC121800.020.45444149
TATGCCG49550.019.92355563
AATGCCG155050.018.9061513
GAGCGGT138650.018.88021529
CGAGATC176550.018.5709818
AGAGCGG165350.018.39444228
TGCCGAG163700.017.65015215
CGTATGC61050.017.34341661
GCGGTTC151700.017.00285531
AGACCGA143550.016.63631251
CCGAGAT201150.016.36802117
ATGCCGA179850.016.33306514
AGCGGTT160750.016.21958530
GACCGAT124650.016.06846852
GTATGCC66550.015.6957762
GAGATCG213300.015.1719819
CAGCAGG194800.014.9200056
GAATGCC194050.014.88398412
GCCGAGA206150.014.22891316