Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945609.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 36782718 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 634153 | 1.7240514961401165 | No Hit |
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 51635 | 0.1403784244546583 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAGATC | 21150 | 0.0 | 27.876259 | 18 |
TATGCCG | 9295 | 0.0 | 26.594889 | 63 |
CGGCATT | 7555 | 0.0 | 26.552519 | 1 |
CGTATGC | 10270 | 0.0 | 24.843319 | 61 |
TGCCGTC | 9790 | 0.0 | 24.654121 | 65 |
ATGCCGT | 9590 | 0.0 | 24.393803 | 64 |
GTATGCC | 10625 | 0.0 | 23.81957 | 62 |
CGCCGTA | 7400 | 0.0 | 23.598024 | 56 |
GCCGTAT | 7670 | 0.0 | 22.881771 | 57 |
GCCGTCT | 10165 | 0.0 | 22.711924 | 66 |
GAGACCG | 18145 | 0.0 | 22.133123 | 50 |
CCGAGAT | 28925 | 0.0 | 20.769657 | 17 |
TCGTATG | 13360 | 0.0 | 20.37607 | 60 |
CCGTATC | 8825 | 0.0 | 20.005884 | 58 |
GGTCGCC | 9580 | 0.0 | 19.978888 | 53 |
CGAGACC | 20895 | 0.0 | 19.25282 | 49 |
AGACCGA | 20575 | 0.0 | 18.500425 | 51 |
GACCGAT | 20320 | 0.0 | 17.700628 | 52 |
GAGATCG | 33485 | 0.0 | 17.607252 | 19 |
CGTATCA | 9895 | 0.0 | 17.596886 | 59 |