FastQCFastQC Report
Wed 16 Nov 2016
SRR1945688.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945688.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45972228
Sequences flagged as poor quality0
Sequence length76
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG63650.021.64125663
GAGACCG124950.020.07286850
CGTATGC73600.019.74479961
CGAGACC130150.019.48524349
GTATGCC77100.018.47816862
CGAGATC180950.018.10326218
AATGCCG160450.017.89880213
GAGCGGT148300.017.2587229
ATGCCGT65000.017.07898564
AGAGCGG172950.016.6686228
GCGGTTC153650.016.47806431
TGCCGAG172950.016.36904315
AGACCGA158850.015.75965651
GACCGAT141950.015.499104552
AGCGGTT171250.015.40012130
CCGAGAT215200.015.2345817
TGCCGTC66650.015.15438365
ATGCCGA194050.014.65791414
GAATGCC207600.013.873548512
GCCGAGA209150.013.55781216