FastQCFastQC Report
Wed 16 Nov 2016
SRR1945602.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945602.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29789686
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC298320.10014204245053138No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG99650.018.8222485
TACCGTG77050.018.2954547
ATACCGT86600.018.0348636
CCGTGAG66600.016.9648829
TATACTG156450.016.3664785
TCTATAC192900.016.203823
CTATACT155450.014.8206414
ACCGTGA92350.014.4494138
CATACAC1085450.013.8727993
ACATGAC817150.013.8585548
CTAGTAC89350.013.5709293
ACACATG1072950.013.4843976
GTATAGA202450.013.2597781
CATGACA846700.013.1695449
TATACAG153800.013.1557895
CTATACC142950.013.0692164
CACATGA1041750.013.0634597
ATACTGT143700.012.9239896
TCATACA1165600.012.854982
GTGTATG925300.012.821731