Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945435.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30045572 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10850 | 0.0 | 17.329073 | 5 |
TATACTG | 15680 | 0.0 | 16.444937 | 5 |
TCTATAC | 19765 | 0.0 | 14.633122 | 3 |
CCGTGAG | 7555 | 0.0 | 14.538285 | 9 |
CATACAC | 91935 | 0.0 | 14.445027 | 3 |
ATACCGT | 9625 | 0.0 | 14.367822 | 6 |
TACCGTG | 8040 | 0.0 | 14.194408 | 7 |
ACATGAC | 66660 | 0.0 | 14.146616 | 8 |
CTATACT | 16365 | 0.0 | 13.995941 | 4 |
ACACATG | 85465 | 0.0 | 13.939684 | 6 |
ACCGTGA | 9650 | 0.0 | 13.874054 | 8 |
CTAGTAC | 10220 | 0.0 | 13.622561 | 3 |
TAGGCTG | 9035 | 0.0 | 13.52665 | 5 |
GTGTATG | 80905 | 0.0 | 13.508267 | 1 |
GTCGCGC | 1630 | 0.0 | 13.4607115 | 8 |
CATGACA | 69390 | 0.0 | 13.457795 | 9 |
CACATGA | 80045 | 0.0 | 13.323644 | 7 |
TATGAGC | 12295 | 0.0 | 13.27674 | 94 |
TCATACA | 98680 | 0.0 | 13.227936 | 2 |
TATACAG | 14950 | 0.0 | 12.816173 | 5 |