FastQCFastQC Report
Wed 16 Nov 2016
SRR1945468.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945468.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42459886
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG211250.012.8809655
TATACCG157700.012.605945
CTATACT223900.012.2371714
GTATAGA299100.011.7166641
CATACAC1070550.011.5192443
GTATTAG279700.011.1670831
TCTATAC279400.011.0006523
TAGACTG98950.010.9239235
ACATGAC918600.010.8718428
ACACATG1167100.010.8521866
ACTGTGC69150.010.6023728
TATACAG250150.010.5585045
CACATGA1121750.010.5577417
GTATATA630000.010.47565651
TAGGCTG100450.010.4332965
CATGACA962800.010.3240249
TACCGTG114250.010.2837247
GTACTAG156950.010.2201481
ATACCGT159800.010.2051486
GTGTATG1009900.010.1913811