Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945468.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 42459886 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 21125 | 0.0 | 12.880965 | 5 |
TATACCG | 15770 | 0.0 | 12.60594 | 5 |
CTATACT | 22390 | 0.0 | 12.237171 | 4 |
GTATAGA | 29910 | 0.0 | 11.716664 | 1 |
CATACAC | 107055 | 0.0 | 11.519244 | 3 |
GTATTAG | 27970 | 0.0 | 11.167083 | 1 |
TCTATAC | 27940 | 0.0 | 11.000652 | 3 |
TAGACTG | 9895 | 0.0 | 10.923923 | 5 |
ACATGAC | 91860 | 0.0 | 10.871842 | 8 |
ACACATG | 116710 | 0.0 | 10.852186 | 6 |
ACTGTGC | 6915 | 0.0 | 10.602372 | 8 |
TATACAG | 25015 | 0.0 | 10.558504 | 5 |
CACATGA | 112175 | 0.0 | 10.557741 | 7 |
GTATATA | 63000 | 0.0 | 10.4756565 | 1 |
TAGGCTG | 10045 | 0.0 | 10.433296 | 5 |
CATGACA | 96280 | 0.0 | 10.324024 | 9 |
TACCGTG | 11425 | 0.0 | 10.283724 | 7 |
GTACTAG | 15695 | 0.0 | 10.220148 | 1 |
ATACCGT | 15980 | 0.0 | 10.205148 | 6 |
GTGTATG | 100990 | 0.0 | 10.191381 | 1 |