FastQCFastQC Report
Wed 16 Nov 2016
SRR1945737.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945737.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45786834
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG228450.015.3433815
TATACCG148750.014.7465215
CATACAC1324450.014.5242443
CTATACT247900.013.6970264
ACATGAC1086700.013.6593658
ACACATG1316050.013.6296716
TCTATAC290800.013.3598853
TATACAG227050.013.3086115
CACATGA1271850.013.1427057
ATCATAC1410850.013.1356851
TCATACA1437050.013.1313372
CATGACA1127950.012.9385689
GTGTATG1143200.012.7323751
GTATATA716750.012.0974751
ATACCGT126750.012.0755856
GTATAGA301050.012.003411
TACACAT1681850.011.9511475
TATGAGC190850.011.8708694
TAATACT368900.011.7002674
GTATTAG249000.011.5768111