Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945555.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26001946 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1340 | 0.0 | 15.785441 | 8 |
TATACTG | 13120 | 0.0 | 13.295618 | 5 |
CTATACT | 13675 | 0.0 | 13.134226 | 4 |
CTGCGCG | 1570 | 0.0 | 12.574124 | 9 |
TCTATAC | 16255 | 0.0 | 12.381012 | 3 |
GTATAGA | 17480 | 0.0 | 12.301153 | 1 |
TATACCG | 9180 | 0.0 | 12.292409 | 5 |
CATACAC | 72425 | 0.0 | 12.251317 | 3 |
TCGCGCG | 1870 | 0.0 | 12.065012 | 9 |
CCGTGAG | 6830 | 0.0 | 11.699204 | 9 |
ACACATG | 71815 | 0.0 | 11.677087 | 6 |
ACATGAC | 56575 | 0.0 | 11.615332 | 8 |
CTAGTAC | 8640 | 0.0 | 11.592183 | 3 |
CACATGA | 69965 | 0.0 | 11.401339 | 7 |
GTATATA | 40410 | 0.0 | 11.329089 | 1 |
TCATACA | 79535 | 0.0 | 11.115029 | 2 |
GTACTAG | 10885 | 0.0 | 11.109019 | 1 |
CATGACA | 57705 | 0.0 | 11.077802 | 9 |
ACCGTGA | 8970 | 0.0 | 10.952237 | 8 |
TAGTACT | 15940 | 0.0 | 10.854952 | 4 |