Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945645.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 139067888 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 33165 | 0.0 | 18.60838 | 1 |
CCTGCTG | 54605 | 0.0 | 11.409999 | 8 |
GGCATTC | 58605 | 0.0 | 11.136866 | 2 |
ATTCCTG | 61330 | 0.0 | 10.434557 | 5 |
GCATTCC | 66915 | 0.0 | 10.000068 | 3 |
TTCCTGC | 69270 | 0.0 | 9.299894 | 6 |
TCCTGCT | 81325 | 0.0 | 8.059897 | 7 |
CTGCTGA | 82915 | 0.0 | 7.6841702 | 9 |
CGAGATC | 72265 | 0.0 | 7.369601 | 18-19 |
CGCCGTA | 28285 | 0.0 | 6.8038626 | 66-67 |
TATGCCG | 31140 | 0.0 | 6.670779 | 62-63 |
ATGCCGT | 30985 | 0.0 | 6.4387684 | 64-65 |
GCCGTAT | 29040 | 0.0 | 6.4085007 | 66-67 |
GCTGAAC | 49800 | 0.0 | 6.307164 | 10-11 |
CGTATGC | 36345 | 0.0 | 5.850714 | 60-61 |
GTATGCC | 38710 | 0.0 | 5.8094053 | 62-63 |
CAGCAGG | 92670 | 0.0 | 5.7752438 | 6 |
GTTCAGC | 91445 | 0.0 | 5.7377515 | 3 |
CCGTATC | 35200 | 0.0 | 5.726613 | 68-69 |
GGTCGCC | 34870 | 0.0 | 5.7011347 | 62-63 |