Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945730.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 132745546 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG | 416265 | 0.31358114267728426 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACCGCGC | 18190 | 0.0 | 41.89392 | 16 |
CGGCATT | 46495 | 0.0 | 40.38601 | 1 |
GAGACCG | 71310 | 0.0 | 40.247463 | 61 |
CGAGACC | 71940 | 0.0 | 40.150642 | 60 |
GAGCGGT | 191760 | 0.0 | 38.42818 | 9 |
AATGCCG | 155410 | 0.0 | 37.877346 | 24 |
AGCGGTT | 195255 | 0.0 | 37.580894 | 10 |
GCGGTTC | 196350 | 0.0 | 36.81378 | 11 |
AGAGCGG | 203250 | 0.0 | 36.64468 | 8 |
CGAGATC | 94610 | 0.0 | 36.622528 | 29 |
GTTCAGC | 192305 | 0.0 | 36.615433 | 14 |
CAGCAGG | 190405 | 0.0 | 36.488853 | 17 |
CGGTTCA | 206260 | 0.0 | 35.00262 | 12 |
ATGCCGA | 159085 | 0.0 | 34.81692 | 25 |
CCGAGAT | 103415 | 0.0 | 34.800385 | 28 |
TGCCGAG | 154010 | 0.0 | 34.769283 | 26 |
AGACCGA | 76870 | 0.0 | 34.502804 | 62 |
ACCGCGG | 28215 | 0.0 | 34.495277 | 16 |
GGTTCAG | 209030 | 0.0 | 34.46205 | 13 |
GAATGCC | 174005 | 0.0 | 34.420353 | 23 |