Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945679.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 42021772 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 3695 | 0.0 | 9.563789 | 56 |
GGTCGCC | 5665 | 0.0 | 8.393378 | 53 |
GCCGTAT | 4585 | 0.0 | 8.172298 | 57 |
TATGCCG | 4255 | 0.0 | 7.2014937 | 53 |
TGGTCGC | 7020 | 0.0 | 7.127472 | 52 |
CGTATGC | 5085 | 0.0 | 6.9779205 | 51 |
AATGCCG | 8885 | 0.0 | 6.716123 | 34 |
GAGACCG | 8775 | 0.0 | 6.690685 | 40 |
GTATGCC | 5380 | 0.0 | 6.483913 | 52 |
TCGGTGG | 9265 | 0.0 | 6.474454 | 48 |
CGAGACC | 9535 | 0.0 | 6.3608165 | 39 |
CTCGGTG | 9145 | 0.0 | 6.1146355 | 47 |
CGTGTAG | 9110 | 0.0 | 6.0784645 | 25 |
CCGTATC | 6245 | 0.0 | 5.915363 | 58 |
TGCCGAG | 10490 | 0.0 | 5.7892623 | 36 |
GGTGGTC | 9745 | 0.0 | 5.5354056 | 50 |
GACCGAT | 10155 | 0.0 | 5.407608 | 42 |
AGACCGA | 11240 | 0.0 | 5.356239 | 41 |
GTAGATC | 12300 | 0.0 | 5.3526225 | 41 |
GCGTCGT | 10240 | 0.0 | 5.331223 | 21 |