FastQCFastQC Report
Wed 16 Nov 2016
SRR1945600.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945600.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75652046
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG391100.015.57715
CATACAC2418750.014.5875493
TATACAG380550.013.9034335
ACATGAC1869200.013.7885478
ACACATG2497300.013.7352646
CTATACT410000.013.6509024
TCTATAC470250.013.4875493
TATACCG237400.013.3873285
CATGACA1924050.013.3071229
CACATGA2408850.013.2605757
TCATACA2635200.013.1956742
ATCATAC2564200.013.1576271
GTGTATG2113200.013.0255961
GTATATA1191750.012.6120031
GTATAGA499200.012.3260831
TAATACT640550.012.1106214
TACACAT3113750.012.0843125
TACCGTG155350.011.9545277
GATTGAG2074900.011.8577737
TAGACCG165750.011.8557015