FastQCFastQC Report
Wed 16 Nov 2016
SRR1945583.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945583.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49879918
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG255250.017.0280865
TATACCG173100.016.0751255
CCGTGAG137150.015.1266379
CTATACT279550.015.0510054
CATACAC1357000.014.865693
GACCGTG82350.014.7457347
TACCGTG131500.014.4136957
ACCGTGA169600.014.3197088
TCTATAC339950.014.1826253
ACATGAC1223950.013.9593068
TATACAG251750.013.9364495
ACACATG1396200.013.9059846
GTCGCGC20700.013.8538468
CTAGTAC178300.013.6460793
CACATGA1376650.013.3353117
CATGACA1268800.013.328039
GTGTATG1209850.013.2645061
GTATAGA350850.013.2490671
TCATACA1509350.013.1775862
ATACCGT157950.013.0212846