FastQCFastQC Report
Wed 16 Nov 2016
SRR1945673.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945673.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64017452
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGACCG159050.018.19952450
CGAGACC163800.017.64930249
AATGCCG184750.016.66275413
TATGCCG70500.016.63102763
GAGCGGT186650.015.33677529
CGAGATC252350.015.05508518
TGCCGAG205700.014.91388515
AGAGCGG222250.014.832087528
CGTATGC89350.013.86714461
GCGGTTC208600.013.77443931
GACCGAT179150.013.69741552
AGACCGA205450.013.63009351
AGCGGTT214400.013.46673630
CCGAGAT284000.013.35241517
ATGCCGA234500.013.24668414
GTATGCC92200.013.05881662
GAATGCC256800.012.04246212
ATGCCGT80250.012.03733964
CAGCAGG263100.011.8089686
GAGATCG325950.011.56981919