Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945478.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41718008 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 58465 | 0.14014331652652254 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG | 52211 | 0.12515218847457915 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 12785 | 0.0 | 43.33753 | 1 |
CGGCGCG | 3485 | 0.0 | 36.143867 | 12 |
CGGGGGT | 7270 | 0.0 | 35.53215 | 39 |
GCGGCGC | 4205 | 0.0 | 35.281223 | 11 |
GGGGGTC | 8930 | 0.0 | 32.689747 | 40 |
TGGTCGC | 13465 | 0.0 | 32.30628 | 62 |
GCTGAAC | 16310 | 0.0 | 31.643303 | 11 |
GGGTCGC | 9105 | 0.0 | 31.518854 | 42 |
GGCATTC | 17995 | 0.0 | 31.27853 | 2 |
TCGGGGG | 10755 | 0.0 | 31.243214 | 38 |
TATGCCG | 13475 | 0.0 | 31.007832 | 63 |
CCTGCTG | 17275 | 0.0 | 30.987675 | 8 |
GCATTCC | 18815 | 0.0 | 29.953175 | 3 |
ATGCCGT | 14075 | 0.0 | 29.536135 | 64 |
CTCGGGG | 9545 | 0.0 | 29.298569 | 37 |
ATTCCTG | 21105 | 0.0 | 29.191734 | 5 |
TGCCGTC | 14285 | 0.0 | 28.95511 | 65 |
TTCCTGC | 21940 | 0.0 | 28.926157 | 6 |
GCCGTAT | 15090 | 0.0 | 28.829144 | 67 |
CCGTATC | 15340 | 0.0 | 28.496822 | 68 |