FastQCFastQC Report
Wed 16 Nov 2016
SRR1945703.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945703.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88168558
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA85800.010.40170256
GGTCGCC108500.010.09593153
GCCGTAT94500.09.74028857
TATGCCG91200.08.59577453
CGTGTAG149700.08.58066625
AGCGTCG156200.08.11126220
GCGTCGT155650.08.07288421
GAGCGTC158550.08.0572319
TGGTCGC133150.07.989248852
CGTATGC107050.07.25648951
GTCGTGT175200.07.25193123
CCGTATC127150.07.238259358
GTATGCC117600.07.23056952
AATGCCG206350.06.83612324
GAGACCG191850.06.69788240
CGAGACC199200.06.48645439
CGTCGTG200500.06.45886822
TGCCGAG226350.06.32424826
TGTAGGG221900.06.29346527
TCGGTGG209300.06.26859848