FastQCFastQC Report
Wed 16 Nov 2016
SRR1945676.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945676.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56617872
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGACCG114800.016.02874450
CGAGACC117650.015.81690449
AATGCCG134000.015.40293213
GAGCGGT131550.014.70128329
TGCCGAG139800.014.56892715
AGAGCGG148250.013.93945128
GCGGTTC144050.013.4268331
ATGCCGA157400.012.97904114
GACCGAT122400.012.63710852
TATGCCG50400.012.46777863
AGCGGTT163650.011.90303230
AGACCGA147550.011.90291651
CGAGATC180750.011.63738118
CAGCAGG184900.011.4711236
GAATGCC183600.011.38971512
CCGAGAT192300.011.1563917
GCCGAGA186900.011.12231216
GGAATGC205650.010.39147711
GTTCAGC196650.09.94376734
CGTATGC68400.09.69859161