Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945576.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35480006 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 18540 | 0.0 | 16.580814 | 5 |
TATACCG | 11170 | 0.0 | 15.926811 | 5 |
CATACAC | 108160 | 0.0 | 14.720414 | 3 |
TCTATAC | 22925 | 0.0 | 14.386659 | 3 |
ACACATG | 106770 | 0.0 | 14.127208 | 6 |
CTATACT | 19545 | 0.0 | 13.985745 | 4 |
ACATGAC | 80070 | 0.0 | 13.767533 | 8 |
GTGTATG | 97840 | 0.0 | 13.476669 | 1 |
CACATGA | 102405 | 0.0 | 13.455983 | 7 |
TCATACA | 116800 | 0.0 | 13.441123 | 2 |
CATGACA | 81120 | 0.0 | 13.357317 | 9 |
TACCGTG | 8700 | 0.0 | 13.340496 | 7 |
GTATAGA | 24740 | 0.0 | 13.09356 | 1 |
ATCATAC | 116230 | 0.0 | 13.068942 | 1 |
TATACAG | 16730 | 0.0 | 12.990842 | 5 |
GTATAGG | 13520 | 0.0 | 12.840263 | 1 |
GTATATA | 53860 | 0.0 | 12.809639 | 1 |
GTATTAG | 21360 | 0.0 | 12.714706 | 1 |
CTAGTAC | 10650 | 0.0 | 12.7071705 | 3 |
ATACCGT | 10050 | 0.0 | 12.574031 | 6 |