FastQCFastQC Report
Wed 16 Nov 2016
SRR1945552.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945552.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34316766
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG121500.012.8093925
TATACTG172100.012.2124695
CTATACT165550.012.0424124
TCTATAC217950.011.9524153
TATACAG154550.011.621745
GTCGCGC19850.011.1298698
CATACAC1335450.011.0667353
ACATGAC1020100.011.0360978
GTATATA498400.010.9232681
GTATAGG123700.010.8410771
ACACATG1373500.010.8353246
CCGTGAG97150.010.7892859
CACATGA1356000.010.5973047
CATGACA1058150.010.5809619
GTATAGA216850.010.5022711
TACCGTG97100.010.4082787
GTATTAG194950.010.4028251
CTAGTAC111000.010.378773
GCCGTGC33150.010.3512338
GTACTAG144550.010.2213641