FastQCFastQC Report
Wed 16 Nov 2016
SRR1945702.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945702.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54899278
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG1704980.3105651043352519Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT232750.043.3909721
CCGAGAT571200.036.15240517
CCTGCTG265650.033.3228388
GGCATTC281350.033.022142
GCATTCC287100.032.825233
GCTGAAC264750.032.09982711
CGAGATC645950.032.0126918
ATTCCTG290350.031.7269215
AACCGAG256950.030.56187215
TGAACCG288550.029.10457213
TTCCTGC319600.028.9856916
GGCTGAT234300.028.7953472
GAACCGA263650.028.77621814
GGGCGCC94100.028.68391663
CGCCGTA255800.028.68136256
ATCAGCC228750.028.0713042
GGTCGCC274450.028.05719253
TATGCCG317300.028.00239663
GCCGTAT263500.027.93356757
TGGTCGC277750.027.3596752