FastQCFastQC Report
Wed 16 Nov 2016
SRR1945734.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945734.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41888620
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG228500.016.2398155
CATACAC1433550.015.4365523
ACACATG1349850.015.054126
ACATGAC1066200.015.04577358
CTATACT228300.014.8729284
CACATGA1319550.014.5757197
CATGACA1081850.014.4760119
TATACCG123200.014.4242275
ATCATAC1478200.014.2715951
TCATACA1543700.014.208362
TATACAG211650.014.169985
TCTATAC262500.013.5853793
GTGTATG1264750.013.3863721
TACACAT1712700.013.3761675
TACCGTG84550.012.91414457
TATGAGC178550.012.88720294
GTATAGG153500.012.6549351
GTATATA623100.012.5661551
ATACACA1893500.012.4482724
GATTGAG1240850.012.4455777