FastQCFastQC Report
Wed 16 Nov 2016
SRR1945604.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945604.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41126698
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2493840.6063798265545169No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC1785880.4342386057835229No Hit
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG654990.15926150939713177Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT125800.039.1920051
TATGCCG107100.036.76246663
ATGCCGT109900.034.88844764
TGCCGTC106300.034.74871465
CGTATGC119050.034.11520461
GCCGTAT84600.033.67333267
GTATGCC118600.033.28336362
CGCCGTA84500.032.96279566
GCCGTCT112250.032.47053566
GGTCGCC91850.032.29228263
CCGAGAT306600.030.70270517
CGAGATC332500.028.27810318
CCTGCTG157200.027.8283128
GCTGAAC156400.027.41519211
CCGTATC99500.027.25866168
AACCGAG162800.027.00932115
TCGTATG168200.026.269460
GGCATTC182450.026.0844172
ATTCCTG173850.026.0474175
TGGTCGC104900.025.75046762