Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945619.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 62468750 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 97455 | 0.15600600300150075 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 21055 | 0.0 | 44.52537 | 1 |
CCGAGAT | 47425 | 0.0 | 36.141155 | 17 |
CCTGCTG | 25730 | 0.0 | 34.441597 | 8 |
CGAGATC | 49960 | 0.0 | 34.309856 | 18 |
GGCATTC | 26955 | 0.0 | 33.69974 | 2 |
GCTGAAC | 26795 | 0.0 | 32.06547 | 11 |
GCATTCC | 28500 | 0.0 | 32.059963 | 3 |
ATTCCTG | 29775 | 0.0 | 30.267073 | 5 |
TATGCCG | 22120 | 0.0 | 29.8966 | 63 |
AACCGAG | 26860 | 0.0 | 29.517033 | 15 |
GGGCGCC | 5810 | 0.0 | 29.256735 | 63 |
TGAACCG | 29170 | 0.0 | 28.919975 | 13 |
GAACCGA | 27415 | 0.0 | 28.500494 | 14 |
CGTATGC | 23985 | 0.0 | 28.30618 | 61 |
TTCCTGC | 32165 | 0.0 | 28.040403 | 6 |
TGCCGTC | 21895 | 0.0 | 26.992777 | 65 |
GTATGCC | 25245 | 0.0 | 26.559208 | 62 |
ATGCCGT | 22595 | 0.0 | 26.421824 | 64 |
GAGACCG | 34130 | 0.0 | 26.375725 | 50 |
CTGAACC | 33175 | 0.0 | 25.833576 | 12 |