FastQCFastQC Report
Wed 16 Nov 2016
SRR1945531.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945531.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41946396
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG209800.011.2901125
CTATACT212250.011.2483594
CATACAC1246750.011.0342793
ACATGAC1011850.010.7339518
ACACATG1273450.010.6768046
GTATATA595300.010.6173011
TATACCG135200.010.6022085
GTATTAG248500.010.5030961
GTGTATG1185250.010.4509691
CATGACA1030100.010.3979059
CACATGA1201150.010.2356457
TCATACA1359900.010.0820592
ATCATAC1335250.09.9390551
GTATAGG158800.09.8911481
TCTATAC255600.09.87447553
GTCGCGC20000.09.8694988
TAGACAG142650.09.6202035
TATACTA387050.09.5682465
GTATTAT337500.09.5308811
GTATAAT329150.09.5297771