FastQCFastQC Report
Wed 16 Nov 2016
SRR1945653.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945653.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65487354
Sequences flagged as poor quality0
Sequence length76
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT3504760.5351811893331344Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG803320.1226679581526534Illumina Paired End PCR Primer 2 (97% over 49bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT685580.10468891444293199Illumina Paired End PCR Primer 2 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT2153750.062.8120279
GCGGTTC2136200.062.10062811
AGCGGTT2157400.061.89731210
AGAGCGG2223300.061.1818928
GTTCAGC2159550.059.96264614
CGGTTCA2200800.059.89730512
CAGCAGG2149950.059.47651717
AATGCCG2047850.059.1673324
GGTTCAG2224850.058.9724313
TGCCGAG2048250.058.24637626
GAATGCC2109350.058.01317623
ATGCCGA2080100.057.71798325
GGAATGC2155200.057.69748322
AAGAGCG2386000.057.6351787
CAGGAAT2168050.057.5385220
GCAGGAA2192950.057.27474619
GAGACCG2007950.057.257930
GACCGAT1799200.056.9098332
CGAGACC2037650.056.88232829
TCAGCAG2280500.056.5173716