Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945611.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 64352224 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 1931878 | 3.0020376607341492 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 765467 | 1.189495797379124 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 213013 | 0.3310110929499499 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG | 125630 | 0.19522246814655544 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGC | 86899 | 0.1350365140449536 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGG | 67815 | 0.10538097331336986 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 394065 | 0.0 | 56.93058 | 43 |
TGCCGTC | 351945 | 0.0 | 56.752274 | 45 |
ATGCCGT | 356920 | 0.0 | 56.695324 | 44 |
CGTATGC | 401630 | 0.0 | 56.540817 | 41 |
GCCGTCT | 333510 | 0.0 | 56.510418 | 46 |
GTATGCC | 400970 | 0.0 | 56.454018 | 42 |
GCGGTTC | 512275 | 0.0 | 55.966614 | 11 |
AGCGGTT | 515695 | 0.0 | 55.934853 | 10 |
GAGCGGT | 523620 | 0.0 | 55.803246 | 9 |
TCGTATG | 415770 | 0.0 | 55.752716 | 40 |
GAGACCG | 461745 | 0.0 | 55.426434 | 30 |
CGAGACC | 465280 | 0.0 | 55.339447 | 29 |
CCGATAT | 313965 | 0.0 | 55.325527 | 34 |
CCGTCTT | 340195 | 0.0 | 55.17552 | 47 |
TATCGTA | 295920 | 0.0 | 55.17215 | 38 |
GACCGAT | 458380 | 0.0 | 55.102066 | 32 |
AGACCGA | 465665 | 0.0 | 54.91259 | 31 |
ATATCGT | 301700 | 0.0 | 54.715954 | 37 |
ACCGATA | 320120 | 0.0 | 54.412174 | 33 |
CGATATC | 319395 | 0.0 | 54.393887 | 35 |