Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945563.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 15197651 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 5905 | 0.0 | 18.720146 | 5 |
GTCGCGC | 775 | 0.0 | 17.586529 | 8 |
TATACTG | 7490 | 0.0 | 15.009885 | 5 |
ATACCGT | 5175 | 0.0 | 14.897047 | 6 |
CTAGTAC | 5470 | 0.0 | 14.877161 | 3 |
TCTATAC | 9920 | 0.0 | 14.747213 | 3 |
TAGGCTG | 4415 | 0.0 | 14.063858 | 5 |
TCGCGCG | 1075 | 0.0 | 13.989739 | 9 |
TACCGTG | 5120 | 0.0 | 13.955245 | 7 |
CTATACT | 7850 | 0.0 | 13.842151 | 4 |
GTATAGA | 11030 | 0.0 | 13.573643 | 1 |
CATACAC | 48555 | 0.0 | 13.291727 | 3 |
CCGTGAG | 3900 | 0.0 | 13.255501 | 9 |
ACATGAC | 36165 | 0.0 | 12.904602 | 8 |
ACACATG | 48220 | 0.0 | 12.60486 | 6 |
TAGACTG | 4035 | 0.0 | 12.590456 | 5 |
TACACTG | 4875 | 0.0 | 12.543825 | 5 |
CTAGGCT | 4430 | 0.0 | 12.529667 | 4 |
TACCGCC | 2820 | 0.0 | 12.5019 | 7 |
TATACAG | 7715 | 0.0 | 12.438142 | 5 |