FastQCFastQC Report
Wed 16 Nov 2016
SRR1945652.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945652.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57391072
Sequences flagged as poor quality0
Sequence length76
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT7198191.2542351535095912Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT2672810.465718779394816Illumina Paired End PCR Primer 2 (100% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG1015060.17686723119582085Illumina Paired End PCR Primer 2 (97% over 49bp)
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG834400.14538846739088615Illumina Paired End PCR Primer 2 (100% over 31bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGC607560.10586315585810978Illumina Paired End PCR Primer 2 (97% over 49bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTTC2776200.057.2195811
GAGCGGT2833850.057.1834539
AGCGGTT2799200.057.14391310
TATGCCG1711400.055.85062443
CGTATGC1766700.055.40775341
GTATGCC1752950.055.26532742
ATGCCGT1447600.055.1752944
AGAGCGG2975050.055.115998
TGCCGTC1391950.054.77968645
CGAGACC2596800.054.67164629
GAGACCG2575450.054.62242530
GTTCAGC2866300.054.3663714
GCCGTCT1264000.054.12664446
CGGTTCA2934150.053.98161312
AATGCCG2711450.053.80168524
CCGATAT1696900.053.77102734
TCGTATG1957900.053.7359340
GGTTCAG2938400.053.71214713
CAGCAGG2856750.053.60548417
AGACCGA2613450.053.59655431