Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945494.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 76427302 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 36 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 20925 | 0.0 | 8.447416 | 94-95 |
GCCGTCT | 20655 | 0.0 | 8.363932 | 94-95 |
GTATGCC | 31525 | 0.0 | 8.241175 | 94-95 |
CGTATGC | 34925 | 0.0 | 8.172833 | 94-95 |
GGTCGCC | 29545 | 0.0 | 8.079507 | 94-95 |
TATGCCG | 26350 | 0.0 | 8.05597 | 94-95 |
ATGCCGT | 23300 | 0.0 | 7.254027 | 94-95 |
CGCCGTA | 23600 | 0.0 | 6.8436723 | 92-93 |
TGGTCGC | 34785 | 0.0 | 6.7626243 | 94-95 |
GTCGCCG | 35325 | 0.0 | 6.5005136 | 94-95 |
TCGTATG | 45760 | 0.0 | 6.2435145 | 94-95 |
GCCGTAT | 27870 | 0.0 | 6.2274137 | 94-95 |
CCGTATC | 27860 | 0.0 | 6.1050563 | 94-95 |
CTCGGTG | 58030 | 0.0 | 5.770007 | 94-95 |
CTCGTAT | 51165 | 0.0 | 5.7613926 | 94-95 |
GTGGTCG | 45245 | 0.0 | 5.428906 | 92-93 |
TCGGTGG | 54325 | 0.0 | 5.4115157 | 94-95 |
AGGCATC | 67530 | 0.0 | 5.329967 | 94-95 |
CATCTCG | 64530 | 0.0 | 5.279835 | 94-95 |
GGCATCT | 63930 | 0.0 | 5.234925 | 92-93 |