FastQCFastQC Report
Wed 16 Nov 2016
SRR1945733.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945733.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42129602
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG226950.016.767515
CATACAC1125600.014.9734523
CTATACT234600.014.4756154
TAGACCG96900.013.9990545
TATACCG128600.013.716245
GTGTATG997550.013.7150991
TCTATAC266850.013.7025183
ACACATG1167600.013.6193466
ACATGAC986450.013.59148
GACCGTG68600.013.5704547
TATACAG228150.013.3434545
TCATACA1251800.013.3241862
ATCATAC1220500.013.1735271
CATGACA1001300.013.1380339
CACATGA1145900.013.0023617
GATTGAG958050.012.5292697
TAGTACT265700.012.5107514
CTAGTAC139450.012.4662453
TACCGTG87300.012.3041657
ATAATAC390000.012.2667133