FastQCFastQC Report
Wed 16 Nov 2016
SRR1945644.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945644.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62332378
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG326700.026.174063
GATCGGA364750.023.8957561
AGAGCAC334850.022.4008888
GAGCACA335000.022.2215069
ATCGGAA409050.021.3643932
CGGAAGA416650.020.827834
GCACACG210000.017.32133310-11
ACGTCTG215550.016.61363614-15
GAAGAGC526150.016.4455916
ACTGACC223500.015.67582132-33
CGTCTGA236150.015.44187816-17
ACACGTC247200.014.62917412-13
CACGTCT253400.014.36390714-15
CACTGAC250600.014.28067930-31
CACACGT254850.014.24536312-13
CCAGTCA255650.014.04381926-27
TCCAGTC253150.013.95062424-25
CTCCAGT267050.013.35647324-25
ACTCCAG277300.013.26984922-23
CAGTCAC266700.013.19764726-27