Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945646.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 54555770 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCACA | 28190 | 0.0 | 17.567686 | 9 |
AGAGCAC | 28650 | 0.0 | 17.449621 | 8 |
TATGCCG | 11985 | 0.0 | 15.374104 | 46-47 |
TCGGAAG | 35460 | 0.0 | 14.688262 | 3 |
CGTATGC | 13225 | 0.0 | 14.303712 | 44-45 |
TGCCGTC | 11170 | 0.0 | 14.203603 | 48-49 |
GCACACG | 18140 | 0.0 | 14.040586 | 10-11 |
ATGCCGT | 12435 | 0.0 | 13.683732 | 46-47 |
GTATGCC | 14265 | 0.0 | 13.359729 | 44-45 |
ACGTCTG | 18560 | 0.0 | 13.308349 | 14-15 |
GATCGGA | 39965 | 0.0 | 13.056829 | 1 |
GCCGTCT | 11900 | 0.0 | 12.680488 | 48-49 |
ATCGGAA | 42795 | 0.0 | 12.391104 | 2 |
CGGAAGA | 42855 | 0.0 | 12.153049 | 4 |
ACACGTC | 21460 | 0.0 | 11.7060585 | 12-13 |
CACACGT | 21895 | 0.0 | 11.516418 | 12-13 |
CGTCTGA | 21920 | 0.0 | 11.418831 | 16-17 |
CACAGTG | 21595 | 0.0 | 11.087077 | 32-33 |
CACGTCT | 22755 | 0.0 | 11.0098095 | 14-15 |
CCAGTCA | 23620 | 0.0 | 10.634162 | 26-27 |