Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945669.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44114582 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGACCG | 11480 | 0.0 | 21.821194 | 50 |
CGAGACC | 12180 | 0.0 | 20.454441 | 49 |
TATGCCG | 4955 | 0.0 | 19.923555 | 63 |
AATGCCG | 15505 | 0.0 | 18.90615 | 13 |
GAGCGGT | 13865 | 0.0 | 18.880215 | 29 |
CGAGATC | 17655 | 0.0 | 18.57098 | 18 |
AGAGCGG | 16535 | 0.0 | 18.394442 | 28 |
TGCCGAG | 16370 | 0.0 | 17.650152 | 15 |
CGTATGC | 6105 | 0.0 | 17.343416 | 61 |
GCGGTTC | 15170 | 0.0 | 17.002855 | 31 |
AGACCGA | 14355 | 0.0 | 16.636312 | 51 |
CCGAGAT | 20115 | 0.0 | 16.368021 | 17 |
ATGCCGA | 17985 | 0.0 | 16.333065 | 14 |
AGCGGTT | 16075 | 0.0 | 16.219585 | 30 |
GACCGAT | 12465 | 0.0 | 16.068468 | 52 |
GTATGCC | 6655 | 0.0 | 15.69577 | 62 |
GAGATCG | 21330 | 0.0 | 15.17198 | 19 |
CAGCAGG | 19480 | 0.0 | 14.920005 | 6 |
GAATGCC | 19405 | 0.0 | 14.883984 | 12 |
GCCGAGA | 20615 | 0.0 | 14.228913 | 16 |