FastQCFastQC Report
Wed 16 Nov 2016
SRR1945451.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945451.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76576416
Sequences flagged as poor quality0
Sequence length40-101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC134050.07.74323394-95
CGTATGC191100.06.74836294-95
CATCACG468500.06.49403494-95
TATGCCG143100.06.33435194-95
TGGTCGC182350.06.20971894-95
CTCGGTG323350.06.11065494-95
GTATGCC184750.05.92784594-95
GATCTCG696800.05.92572694-95
TGCCGTC117800.05.6072494-95
TCGGTGG313150.05.32351794-95
ATCTCGG484200.05.232285594-95
CGCCGTA119900.05.19994-95
ATGCCGT134450.05.189332594-95
CAGTCAC713200.05.15599194-95
ATCACGA544600.05.051029794-95
GTCGCCG201150.05.018075594-95