Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945607.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 85166944 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 117497 | 0.13796080319613205 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 21765 | 0.0 | 36.871315 | 1 |
CGAGATC | 53100 | 0.0 | 28.113121 | 18 |
TATGCCG | 20515 | 0.0 | 27.996243 | 63 |
CCGAGAT | 54460 | 0.0 | 27.26302 | 17 |
CGTATGC | 23430 | 0.0 | 25.77145 | 61 |
GGCATTC | 30430 | 0.0 | 24.352098 | 2 |
GTATGCC | 24305 | 0.0 | 24.238281 | 62 |
CCTGCTG | 28410 | 0.0 | 24.027529 | 8 |
GAGACCG | 40395 | 0.0 | 23.86159 | 50 |
CGAGACC | 40805 | 0.0 | 23.398403 | 49 |
ATGCCGT | 20595 | 0.0 | 22.877686 | 64 |
GGGCGCC | 8550 | 0.0 | 22.827911 | 63 |
TGCCGTC | 19755 | 0.0 | 22.717257 | 65 |
GCATTCC | 33255 | 0.0 | 22.692545 | 3 |
CGCCGTA | 16105 | 0.0 | 22.656664 | 56 |
GCTGAAC | 28855 | 0.0 | 22.077684 | 11 |
GCCGTAT | 16750 | 0.0 | 22.068956 | 57 |
GGTCGCC | 17565 | 0.0 | 22.06803 | 53 |
GACCGAT | 40760 | 0.0 | 21.771357 | 52 |
GAGATCG | 70390 | 0.0 | 21.236782 | 19 |