Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945443.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37615866 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 11615 | 0.0 | 15.489946 | 5 |
TATACTG | 18370 | 0.0 | 14.872364 | 5 |
TATGAGC | 15425 | 0.0 | 14.642224 | 94 |
ACATGAC | 100265 | 0.0 | 13.964191 | 8 |
TATACAG | 17775 | 0.0 | 13.7903385 | 5 |
TCTATAC | 22260 | 0.0 | 13.68024 | 3 |
CATACAC | 127115 | 0.0 | 13.602758 | 3 |
CTATACT | 19410 | 0.0 | 13.409132 | 4 |
ACACATG | 129295 | 0.0 | 13.373989 | 6 |
GTATTAT | 35035 | 0.0 | 13.355642 | 1 |
CATGACA | 104650 | 0.0 | 13.21674 | 9 |
CACATGA | 125265 | 0.0 | 13.036737 | 7 |
GTATATA | 53480 | 0.0 | 12.777946 | 1 |
GTGTATG | 112705 | 0.0 | 12.530827 | 1 |
TCATACA | 138845 | 0.0 | 12.41425 | 2 |
TACACAT | 151065 | 0.0 | 12.363528 | 5 |
TAGGCTG | 10480 | 0.0 | 12.353354 | 5 |
ATCATAC | 132690 | 0.0 | 12.331591 | 1 |
TAATACT | 30395 | 0.0 | 12.179132 | 4 |
ATACCGT | 10215 | 0.0 | 12.114688 | 6 |