Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945578.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 54977318 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 20525 | 0.0 | 19.080858 | 5 |
CCGTGAG | 15455 | 0.0 | 18.381811 | 9 |
TACCGTG | 14990 | 0.0 | 17.846157 | 7 |
ACCGTGA | 19515 | 0.0 | 16.807943 | 8 |
TATACTG | 28410 | 0.0 | 16.34023 | 5 |
ATACCGT | 18070 | 0.0 | 16.19299 | 6 |
TCTATAC | 36470 | 0.0 | 15.763758 | 3 |
CTATACT | 29695 | 0.0 | 14.305197 | 4 |
CATACAC | 173030 | 0.0 | 14.181131 | 3 |
CTAGTAC | 20435 | 0.0 | 14.143403 | 3 |
ACATGAC | 130180 | 0.0 | 13.864916 | 8 |
GTATAGA | 40875 | 0.0 | 13.791542 | 1 |
GACCGTG | 8850 | 0.0 | 13.77202 | 7 |
ACACATG | 170510 | 0.0 | 13.691778 | 6 |
TATACAG | 27060 | 0.0 | 13.479266 | 5 |
CACATGA | 166040 | 0.0 | 13.264253 | 7 |
CATGACA | 135270 | 0.0 | 13.187386 | 9 |
TCATACA | 187290 | 0.0 | 12.931499 | 2 |
GTGTATG | 155665 | 0.0 | 12.870434 | 1 |
CTATACC | 30180 | 0.0 | 12.842977 | 4 |