FastQCFastQC Report
Wed 16 Nov 2016
SRR1945471.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945471.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66993726
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG368450.010.5144474
AGAGCGT198050.09.3696859
GGTCGCC91400.08.721642544-45
GATCGGA476700.08.2721132
CGGAAGA485200.08.15737155
CGCCGTA99600.07.894479846-47
ATCGGAA520750.07.7743153
AAGAGCG250250.07.6387918
GCACACG137400.07.600745712-13
GAGCGTC128850.07.45426410-11
AGCGTCG134200.07.052863610-11
AGAGCAC306150.07.0512089
TGGTCGC113850.06.972474642-43
GAAGAGC595400.06.89110237
GCGTCGT144550.06.724854512-13
TATGCCG103600.06.547509746-47
GCCGTCT109850.06.403126750-51
TGCCGTC101150.06.3650448-49
CGTCGTG166000.06.0524912-13
CACACGT186300.05.893495612-13