Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945707.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 72822480 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 257399 | 0.35346090932360447 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGGCAT | 19875 | 0.0 | 50.64269 | 1 |
CGGCATT | 24935 | 0.0 | 41.803116 | 2 |
AACCGGG | 25745 | 0.0 | 37.11002 | 16 |
CCGGGAT | 18720 | 0.0 | 36.6455 | 18 |
GGCATTC | 35180 | 0.0 | 33.924175 | 3 |
TGAACCG | 37640 | 0.0 | 32.715954 | 14 |
GCTGAAC | 27545 | 0.0 | 31.472073 | 12 |
GAACCGG | 31810 | 0.0 | 31.398613 | 15 |
CTGAACC | 36655 | 0.0 | 31.314116 | 13 |
CGAGATC | 78010 | 0.0 | 31.04061 | 18 |
CCGAGAT | 79000 | 0.0 | 30.739931 | 17 |
ATTCCTG | 31225 | 0.0 | 30.157495 | 6 |
GCATTCC | 38435 | 0.0 | 29.8865 | 4 |
CCTGCTG | 27830 | 0.0 | 28.68542 | 9 |
TATGCCG | 20235 | 0.0 | 27.800753 | 43 |
GGGATCG | 20515 | 0.0 | 27.028738 | 20 |
ACCGGGA | 32605 | 0.0 | 26.994282 | 17 |
TTCCTGC | 33410 | 0.0 | 26.982533 | 7 |
GGATCGG | 21755 | 0.0 | 26.938549 | 21 |
CGTATGC | 23705 | 0.0 | 26.061478 | 41 |