Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945703.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 88168558 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 8580 | 0.0 | 10.401702 | 56 |
GGTCGCC | 10850 | 0.0 | 10.095931 | 53 |
GCCGTAT | 9450 | 0.0 | 9.740288 | 57 |
TATGCCG | 9120 | 0.0 | 8.595774 | 53 |
CGTGTAG | 14970 | 0.0 | 8.580666 | 25 |
AGCGTCG | 15620 | 0.0 | 8.111262 | 20 |
GCGTCGT | 15565 | 0.0 | 8.072884 | 21 |
GAGCGTC | 15855 | 0.0 | 8.05723 | 19 |
TGGTCGC | 13315 | 0.0 | 7.9892488 | 52 |
CGTATGC | 10705 | 0.0 | 7.256489 | 51 |
GTCGTGT | 17520 | 0.0 | 7.251931 | 23 |
CCGTATC | 12715 | 0.0 | 7.2382593 | 58 |
GTATGCC | 11760 | 0.0 | 7.230569 | 52 |
AATGCCG | 20635 | 0.0 | 6.836123 | 24 |
GAGACCG | 19185 | 0.0 | 6.697882 | 40 |
CGAGACC | 19920 | 0.0 | 6.486454 | 39 |
CGTCGTG | 20050 | 0.0 | 6.458868 | 22 |
TGCCGAG | 22635 | 0.0 | 6.324248 | 26 |
TGTAGGG | 22190 | 0.0 | 6.293465 | 27 |
TCGGTGG | 20930 | 0.0 | 6.268598 | 48 |