Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945712.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 148553582 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG | 286370 | 0.19277219447996885 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 139315 | 0.0 | 35.393448 | 9 |
AATGCCG | 116675 | 0.0 | 35.285976 | 24 |
GCGGTTC | 142535 | 0.0 | 34.093452 | 11 |
AGCGGTT | 144590 | 0.0 | 34.019997 | 10 |
GAGACCG | 59970 | 0.0 | 33.937164 | 61 |
CGAGACC | 60805 | 0.0 | 33.831978 | 60 |
AGAGCGG | 149600 | 0.0 | 33.3292 | 8 |
GTTCAGC | 145645 | 0.0 | 32.84453 | 14 |
CGGCATT | 40235 | 0.0 | 32.541035 | 1 |
CAGCAGG | 145800 | 0.0 | 32.53212 | 17 |
ACCGCGC | 14540 | 0.0 | 31.59935 | 16 |
TGCCGAG | 122400 | 0.0 | 31.40964 | 26 |
ATGCCGA | 126275 | 0.0 | 31.119747 | 25 |
CGGTTCA | 156795 | 0.0 | 31.08862 | 12 |
GAATGCC | 138740 | 0.0 | 30.86576 | 23 |
CGAGATC | 81080 | 0.0 | 30.332499 | 29 |
GGTTCAG | 161740 | 0.0 | 30.127314 | 13 |
GGAATGC | 145045 | 0.0 | 29.880623 | 22 |
CAGGAAT | 148705 | 0.0 | 29.792244 | 20 |
AAGAGCG | 178580 | 0.0 | 28.701813 | 7 |