Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945553.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23929168 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 12590 | 0.0 | 14.191397 | 5 |
TATACCG | 8290 | 0.0 | 12.988176 | 5 |
CTATACT | 13820 | 0.0 | 12.7922535 | 4 |
TACCGTG | 6405 | 0.0 | 12.5496 | 7 |
TCTATAC | 16490 | 0.0 | 11.919209 | 3 |
GTATAGA | 17080 | 0.0 | 11.679888 | 1 |
CATACAC | 52905 | 0.0 | 11.589712 | 3 |
GTATATA | 35440 | 0.0 | 11.523561 | 1 |
CTAGTAC | 8410 | 0.0 | 11.405806 | 3 |
ACATGAC | 43830 | 0.0 | 11.378714 | 8 |
TATACAG | 13880 | 0.0 | 11.246461 | 5 |
ACCGTGA | 8270 | 0.0 | 11.197214 | 8 |
ACACATG | 52680 | 0.0 | 11.189345 | 6 |
GTATTAG | 17935 | 0.0 | 11.149315 | 1 |
CATGACA | 44540 | 0.0 | 11.028057 | 9 |
TAGGGTG | 5520 | 0.0 | 10.902802 | 5 |
ATACCGT | 9350 | 0.0 | 10.85913 | 6 |
CACATGA | 51630 | 0.0 | 10.816013 | 7 |
GTATAAT | 21535 | 0.0 | 10.683772 | 1 |
GTACTAG | 10010 | 0.0 | 10.622702 | 1 |