Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945564.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 76758642 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 77982 | 0.10159377233380444 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 37915 | 0.0 | 15.8849535 | 5 |
TATACCG | 25085 | 0.0 | 15.559721 | 5 |
CTAGTAC | 26335 | 0.0 | 14.140522 | 3 |
TCTATAC | 48220 | 0.0 | 13.986435 | 3 |
CATACAC | 224850 | 0.0 | 13.775538 | 3 |
CTATACT | 39845 | 0.0 | 13.687195 | 4 |
ACATGAC | 187415 | 0.0 | 13.437848 | 8 |
TACCGTG | 19045 | 0.0 | 13.388419 | 7 |
ACACATG | 230040 | 0.0 | 13.264107 | 6 |
GTATAGA | 53185 | 0.0 | 13.249511 | 1 |
CCGTGAG | 19915 | 0.0 | 13.208545 | 9 |
ATACCGT | 22770 | 0.0 | 13.205582 | 6 |
TATACAG | 36965 | 0.0 | 13.032132 | 5 |
CACATGA | 225445 | 0.0 | 12.920245 | 7 |
CATGACA | 193835 | 0.0 | 12.895657 | 9 |
GTGTATG | 209235 | 0.0 | 12.603299 | 1 |
TCATACA | 244845 | 0.0 | 12.536982 | 2 |
ACCGTGA | 26045 | 0.0 | 12.198871 | 8 |
TAGACCG | 18840 | 0.0 | 12.178304 | 5 |
ATCATAC | 249290 | 0.0 | 12.080452 | 1 |