FastQCFastQC Report
Wed 16 Nov 2016
SRR1945579.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945579.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101891064
Sequences flagged as poor quality0
Sequence length40-101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC303900.07.844010494-95
TGCCGTC221850.07.60301394-95
TATGCCG295250.07.50058794-95
GTATGCC360850.07.369209394-95
GCCGTCT232300.06.989322794-95
CGTATGC403850.06.911313594-95
GTCGCCG353100.06.62918794-95
TGGTCGC374450.06.56063192-93
CGCCGTA247850.06.365303590-91
ATGCCGT256200.06.30372394-95
CTCGGTG625200.05.81792594-95
GCCGTAT331200.05.440501792-93
TCGTATG555350.05.31516194-95
CTCGTAT623400.05.22272294-95
TCGGTGG606450.05.1984194-95
CACTAGC1130750.05.127050494-95
GTGGTCG475800.05.05329992-93