Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945625.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 79807818 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 113433 | 0.1421326918122232 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 24135 | 0.0 | 40.126377 | 1 |
CGAGATC | 54550 | 0.0 | 30.622868 | 18 |
CCTGCTG | 30470 | 0.0 | 30.232742 | 8 |
CCGAGAT | 56860 | 0.0 | 29.47993 | 17 |
GGCATTC | 32990 | 0.0 | 28.656534 | 2 |
GCTGAAC | 31585 | 0.0 | 28.306242 | 11 |
TATGCCG | 21405 | 0.0 | 27.649483 | 63 |
GCATTCC | 34835 | 0.0 | 27.218147 | 3 |
ATTCCTG | 37080 | 0.0 | 25.585096 | 5 |
CGTATGC | 24245 | 0.0 | 25.014582 | 61 |
TGAACCG | 35085 | 0.0 | 24.99458 | 13 |
AACCGAG | 31715 | 0.0 | 24.763132 | 15 |
ATGCCGT | 21465 | 0.0 | 24.105326 | 64 |
TTCCTGC | 39530 | 0.0 | 24.00031 | 6 |
GTATGCC | 25270 | 0.0 | 23.765278 | 62 |
TGCCGTC | 20910 | 0.0 | 23.592258 | 65 |
GAGATCG | 71100 | 0.0 | 23.537876 | 19 |
GAGACCG | 38935 | 0.0 | 22.883108 | 50 |
GAACCGA | 34060 | 0.0 | 22.822163 | 14 |
CGAGACC | 39240 | 0.0 | 22.700573 | 49 |