Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945706.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 115948538 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 300146 | 0.25886139245671214 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 41115 | 0.0 | 43.017345 | 1 |
GCTGAAC | 50205 | 0.0 | 30.372486 | 11 |
CCGAGAT | 121590 | 0.0 | 30.231699 | 17 |
ATTCCTG | 54380 | 0.0 | 30.206276 | 5 |
CCTGCTG | 53680 | 0.0 | 29.646027 | 8 |
GCATTCC | 57250 | 0.0 | 29.585314 | 3 |
AACCGAG | 47990 | 0.0 | 29.338934 | 15 |
CGAGATC | 125785 | 0.0 | 29.208305 | 18 |
CGCCGTA | 47955 | 0.0 | 28.76422 | 56 |
GGCATTC | 59005 | 0.0 | 28.260342 | 2 |
TTCCTGC | 58530 | 0.0 | 28.212112 | 6 |
GCCGTAT | 49230 | 0.0 | 28.03906 | 57 |
TATGCCG | 54485 | 0.0 | 27.911179 | 63 |
GGCTGAT | 44005 | 0.0 | 27.563215 | 2 |
ATCAGCC | 45185 | 0.0 | 26.789192 | 2 |
GGTCGCC | 54925 | 0.0 | 26.661871 | 53 |
TGAACCG | 57035 | 0.0 | 26.432013 | 13 |
CCGTATC | 52390 | 0.0 | 26.226856 | 58 |
CTGAACC | 60435 | 0.0 | 25.916485 | 12 |
GAACCGA | 52560 | 0.0 | 25.87495 | 14 |