FastQCFastQC Report
Wed 16 Nov 2016
SRR1945667.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945667.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77164912
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCACGC109400.08.44022928-29
TCGGAAG349700.08.1029843
TATGCCG116050.07.4922446-47
ATGCCGT138350.07.031958646-47
GATCGGA438750.06.9091381
GGGCGCC47100.06.88667542-43
GCACACG135350.06.856817710-11
GCCGTCT147450.06.631705348-49
CACGCCA144400.06.492578530-31
CGGAAGA460600.06.48831654
ATCGGAA464100.06.44975232
GAGCGTC143550.06.3832669
TGCCGTC135650.06.35949948-49
CGTATGC137350.06.31338344-45
GTATGCC149800.06.21223444-45
TCACGCC142100.06.184278530-31
GAGCACA295300.05.93549449
ACGTCTG166650.05.836762414-15
AGAGCAC329050.05.45521458
AGTCACG171600.05.380891328-29