Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945567.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 46046168 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 51301 | 0.11141209405308168 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 24515 | 0.0 | 16.122183 | 5 |
CTATACT | 25605 | 0.0 | 15.313358 | 4 |
GAGCGCG | 2715 | 0.0 | 14.854561 | 7 |
CATACAC | 126025 | 0.0 | 14.27631 | 3 |
TATACCG | 15410 | 0.0 | 14.219796 | 5 |
TCTATAC | 30255 | 0.0 | 13.996575 | 3 |
TATACAG | 23155 | 0.0 | 13.837206 | 5 |
ACATGAC | 103705 | 0.0 | 13.667407 | 8 |
ACACATG | 127480 | 0.0 | 13.617729 | 6 |
CACATGA | 124775 | 0.0 | 13.237772 | 7 |
CATGACA | 106385 | 0.0 | 13.205149 | 9 |
GTGTATG | 115990 | 0.0 | 12.947759 | 1 |
TCATACA | 137145 | 0.0 | 12.788918 | 2 |
TAGACCG | 11080 | 0.0 | 12.69922 | 5 |
GTATAGA | 32555 | 0.0 | 12.63255 | 1 |
GACCGTG | 7065 | 0.0 | 12.368288 | 7 |
ATCATAC | 139340 | 0.0 | 12.309948 | 1 |
ACTGTGC | 7805 | 0.0 | 12.286482 | 8 |
TATATAC | 72680 | 0.0 | 12.250958 | 3 |
GTATAGG | 16370 | 0.0 | 12.246797 | 1 |