Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945714.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 165061790 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 31140 | 0.0 | 17.95908 | 1 |
CGCCGTA | 19315 | 0.0 | 14.718921 | 66 |
GCCGTAT | 19645 | 0.0 | 14.702912 | 67 |
CGAGATC | 65470 | 0.0 | 14.695836 | 18 |
TATGCCG | 21160 | 0.0 | 13.233699 | 63 |
GGTCGCC | 24970 | 0.0 | 13.078864 | 63 |
AATGCCG | 42650 | 0.0 | 11.87418 | 13 |
ATGCCGT | 22610 | 0.0 | 11.611041 | 64 |
CGTATGC | 25115 | 0.0 | 11.606519 | 61 |
GAGACCG | 39200 | 0.0 | 11.596454 | 50 |
GCTGAAC | 45320 | 0.0 | 11.545385 | 11 |
CCTGCTG | 49180 | 0.0 | 11.526105 | 8 |
CGAGACC | 40680 | 0.0 | 11.426323 | 49 |
CCGAGAT | 90025 | 0.0 | 11.156675 | 17 |
GAGATCG | 87775 | 0.0 | 10.949577 | 19 |
GGCATTC | 54240 | 0.0 | 10.928675 | 2 |
CCGTATC | 27005 | 0.0 | 10.786724 | 68 |
CGTGTAG | 39415 | 0.0 | 10.546467 | 35 |
ATTCCTG | 55435 | 0.0 | 10.46586 | 5 |
TGGTCGC | 30240 | 0.0 | 10.369288 | 62 |