Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945673.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 64017452 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGACCG | 15905 | 0.0 | 18.199524 | 50 |
CGAGACC | 16380 | 0.0 | 17.649302 | 49 |
AATGCCG | 18475 | 0.0 | 16.662754 | 13 |
TATGCCG | 7050 | 0.0 | 16.631027 | 63 |
GAGCGGT | 18665 | 0.0 | 15.336775 | 29 |
CGAGATC | 25235 | 0.0 | 15.055085 | 18 |
TGCCGAG | 20570 | 0.0 | 14.913885 | 15 |
AGAGCGG | 22225 | 0.0 | 14.8320875 | 28 |
CGTATGC | 8935 | 0.0 | 13.867144 | 61 |
GCGGTTC | 20860 | 0.0 | 13.774439 | 31 |
GACCGAT | 17915 | 0.0 | 13.697415 | 52 |
AGACCGA | 20545 | 0.0 | 13.630093 | 51 |
AGCGGTT | 21440 | 0.0 | 13.466736 | 30 |
CCGAGAT | 28400 | 0.0 | 13.352415 | 17 |
ATGCCGA | 23450 | 0.0 | 13.246684 | 14 |
GTATGCC | 9220 | 0.0 | 13.058816 | 62 |
GAATGCC | 25680 | 0.0 | 12.042462 | 12 |
ATGCCGT | 8025 | 0.0 | 12.037339 | 64 |
CAGCAGG | 26310 | 0.0 | 11.808968 | 6 |
GAGATCG | 32595 | 0.0 | 11.569819 | 19 |