FastQCFastQC Report
Wed 16 Nov 2016
SRR1945556.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945556.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26619712
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG96300.015.0383245
TATACTG131800.012.985575
TCTATAC179150.012.861293
CTAGTAC94400.012.80166153
CTATACT143450.012.6848544
TACCGTG74600.012.0353017
CCGTGAG67850.011.984949
ATACCGT100250.011.916
GTATAGG98700.011.4891421
TAGTACT175350.011.3693364
GTATAGA200400.011.2936711
GTATATA411350.011.1870371
GTCGCGC14350.011.1375028
GTATTAG191150.010.9294021
ACCGTGA100100.010.8946868
TAGACTG58500.010.7702055
GACCGTG48500.010.75837
CATACAC590350.010.6335173
CTATACC133250.010.5153584
GTACTAG119150.010.5044991