Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945561.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26281616 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 13515 | 0.0 | 15.053641 | 5 |
TCTATAC | 16840 | 0.0 | 14.848888 | 3 |
TATACCG | 8465 | 0.0 | 14.717012 | 5 |
CATACAC | 62485 | 0.0 | 14.056659 | 3 |
GAGCGCG | 1535 | 0.0 | 14.013114 | 7 |
CTAGTAC | 8570 | 0.0 | 13.4386015 | 3 |
ACACATG | 64225 | 0.0 | 13.417666 | 6 |
CTATACT | 14380 | 0.0 | 13.337875 | 4 |
ACATGAC | 56305 | 0.0 | 13.307284 | 8 |
TATACAG | 12665 | 0.0 | 12.950236 | 5 |
CATGACA | 58230 | 0.0 | 12.821191 | 9 |
CACATGA | 63345 | 0.0 | 12.670245 | 7 |
GTGTATG | 58980 | 0.0 | 12.654747 | 1 |
TCATACA | 69405 | 0.0 | 12.412947 | 2 |
ATACCGT | 7240 | 0.0 | 12.317323 | 6 |
TAGTACT | 17740 | 0.0 | 12.200996 | 4 |
GTATTAG | 14440 | 0.0 | 12.147336 | 1 |
TAGAGCG | 4100 | 0.0 | 12.1322365 | 5 |
ATCATAC | 70975 | 0.0 | 12.092201 | 1 |
GTATATA | 43145 | 0.0 | 12.0410385 | 1 |