FastQCFastQC Report
Wed 16 Nov 2016
SRR1945611.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945611.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64352224
Sequences flagged as poor quality0
Sequence length76
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT19318783.0020376607341492Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT7654671.189495797379124Illumina Paired End PCR Primer 2 (100% over 50bp)
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG2130130.3310110929499499Illumina Paired End PCR Primer 2 (100% over 31bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG1256300.19522246814655544Illumina Paired End PCR Primer 2 (97% over 49bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGC868990.1350365140449536Illumina Paired End PCR Primer 2 (97% over 49bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGG678150.10538097331336986Illumina Paired End PCR Primer 2 (97% over 49bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3940650.056.9305843
TGCCGTC3519450.056.75227445
ATGCCGT3569200.056.69532444
CGTATGC4016300.056.54081741
GCCGTCT3335100.056.51041846
GTATGCC4009700.056.45401842
GCGGTTC5122750.055.96661411
AGCGGTT5156950.055.93485310
GAGCGGT5236200.055.8032469
TCGTATG4157700.055.75271640
GAGACCG4617450.055.42643430
CGAGACC4652800.055.33944729
CCGATAT3139650.055.32552734
CCGTCTT3401950.055.1755247
TATCGTA2959200.055.1721538
GACCGAT4583800.055.10206632
AGACCGA4656650.054.9125931
ATATCGT3017000.054.71595437
ACCGATA3201200.054.41217433
CGATATC3193950.054.39388735