Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945495.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 60539878 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 29690 | 0.0 | 12.142372 | 4 |
GGTCGCC | 7235 | 0.0 | 11.39985 | 44-45 |
AGAGCGT | 16850 | 0.0 | 10.698067 | 9 |
CGCCGTA | 8485 | 0.0 | 9.869702 | 46-47 |
GATCGGA | 39135 | 0.0 | 9.498464 | 2 |
CGGAAGA | 40775 | 0.0 | 9.035609 | 5 |
GAGCGTC | 9950 | 0.0 | 8.871385 | 10-11 |
ATCGGAA | 43815 | 0.0 | 8.759485 | 3 |
GCACACG | 10570 | 0.0 | 8.659585 | 12-13 |
AAGAGCG | 21950 | 0.0 | 8.509334 | 8 |
AGCGTCG | 10850 | 0.0 | 8.414562 | 10-11 |
TGGTCGC | 9695 | 0.0 | 8.399711 | 42-43 |
GCGTCGT | 11500 | 0.0 | 7.878278 | 12-13 |
AGAGCAC | 26735 | 0.0 | 7.683387 | 9 |
TATGCCG | 7940 | 0.0 | 7.3564205 | 46-47 |
GAAGAGC | 52210 | 0.0 | 7.3334284 | 7 |
GCCGTAT | 12580 | 0.0 | 6.9448466 | 48-49 |
TGCCGTC | 8130 | 0.0 | 6.67301 | 48-49 |
ACGTCTG | 14575 | 0.0 | 6.647748 | 16-17 |
CGTCGTG | 14100 | 0.0 | 6.5411725 | 12-13 |