FastQCFastQC Report
Wed 16 Nov 2016
SRR1945664.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945664.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52222376
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG203700.09.280293
TATGCCG72900.08.681846-47
GCACACG74600.08.41748810-11
CGTATGC79650.07.88964844-45
GAGCACA179750.07.37610349
ATCGGAA261100.07.36816362
CGGAAGA266800.07.3518984
GATCGGA262350.07.3197211
ATGCCGT88150.07.28621246-47
TGCCGTC88850.07.278741448-49
GCCGTCT90150.07.225762448-49
GTATGCC95000.06.738258444-45
ACGTCTG104150.06.09974514-15
AGAGCAC213300.06.08394778
GAGCGTC86350.06.02240669
GGGCGCC35250.05.388325742-43
CACACGT128450.05.29180112-13
GTCACCG134050.05.22528-29
ACACGTC125500.05.15471912-13
CCGATGT136350.05.070696432-33