Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945475.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30784692 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10065 | 0.0 | 12.98053 | 5 |
TATACTG | 15925 | 0.0 | 11.951901 | 5 |
CATACAC | 98410 | 0.0 | 11.15569 | 3 |
GCCGTGC | 3165 | 0.0 | 10.988215 | 8 |
ACATGAC | 76930 | 0.0 | 10.910757 | 8 |
CTATACT | 15705 | 0.0 | 10.653038 | 4 |
CCGTGCG | 1770 | 0.0 | 10.62094 | 9 |
CCGTGAG | 7135 | 0.0 | 10.604938 | 9 |
ATACCGT | 10115 | 0.0 | 10.593278 | 6 |
ACACATG | 100015 | 0.0 | 10.567827 | 6 |
TCTATAC | 19360 | 0.0 | 10.486757 | 3 |
GTATAGA | 21345 | 0.0 | 10.446103 | 1 |
CATGACA | 79305 | 0.0 | 10.441949 | 9 |
GTATATA | 46705 | 0.0 | 10.313562 | 1 |
CACATGA | 99205 | 0.0 | 10.275132 | 7 |
TACCGTG | 7750 | 0.0 | 10.248172 | 7 |
TATACAG | 14560 | 0.0 | 10.199694 | 5 |
GACCGTG | 4170 | 0.0 | 10.0303335 | 7 |
TCATACA | 108425 | 0.0 | 10.029952 | 2 |
GTATAGG | 10480 | 0.0 | 9.874918 | 1 |