Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945544.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35325694 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 18120 | 0.0 | 13.486735 | 5 |
TATACCG | 12295 | 0.0 | 12.460938 | 5 |
CTATACT | 18790 | 0.0 | 12.380555 | 4 |
TAGACTG | 7965 | 0.0 | 12.036663 | 5 |
GTATTAG | 26350 | 0.0 | 12.029063 | 1 |
TCTATAC | 22805 | 0.0 | 11.912084 | 3 |
TATACAG | 21845 | 0.0 | 11.574225 | 5 |
GTATAGA | 23545 | 0.0 | 11.384887 | 1 |
CTAGTAC | 11305 | 0.0 | 10.933901 | 3 |
CATACAC | 74190 | 0.0 | 10.915154 | 3 |
TAATACT | 35295 | 0.0 | 10.891854 | 4 |
GTATATA | 50260 | 0.0 | 10.638747 | 1 |
TACCGTG | 8845 | 0.0 | 10.414101 | 7 |
ACATGAC | 62875 | 0.0 | 10.367345 | 8 |
GTGTATG | 69305 | 0.0 | 10.2869625 | 1 |
GTATAGG | 13495 | 0.0 | 10.280202 | 1 |
ATACCGT | 13875 | 0.0 | 10.195216 | 6 |
GTACTAG | 13015 | 0.0 | 10.153475 | 1 |
ACACATG | 72600 | 0.0 | 10.059521 | 6 |
CATGACA | 65035 | 0.0 | 9.929171 | 9 |