FastQCFastQC Report
Wed 16 Nov 2016
SRR1945749.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945749.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20282434
Sequences flagged as poor quality0
Sequence length101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC29100.07.500948-49
ATGCCGT34350.07.252031346-47
TATGCCG30300.07.2034846-47
GCCGTCT32550.06.705873548-49
CGTATGC36550.05.97180544-45
GTATGCC39500.05.645935544-45