Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945612.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 63072864 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 1873317 | 2.970083933401217 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 789715 | 1.2520677672096832 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 193443 | 0.30669766319791664 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG | 91987 | 0.14584243391896712 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGC | 65079 | 0.10318066419181472 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGGGGC | 48350 | 0.0 | 56.828358 | 9 |
TATGCCG | 381725 | 0.0 | 56.14226 | 43 |
TGCCGTC | 349765 | 0.0 | 55.986607 | 45 |
ATGCCGT | 353290 | 0.0 | 55.976597 | 44 |
GCCGTCT | 336510 | 0.0 | 55.822777 | 46 |
CGTATGC | 387760 | 0.0 | 55.789757 | 41 |
GTATGCC | 387985 | 0.0 | 55.642696 | 42 |
GCGGTTC | 481250 | 0.0 | 55.071648 | 11 |
GAGACCG | 428055 | 0.0 | 54.99394 | 30 |
TCGTATG | 399320 | 0.0 | 54.920467 | 40 |
CGAGACC | 431875 | 0.0 | 54.876804 | 29 |
AGCGGTT | 486035 | 0.0 | 54.8725 | 10 |
AGGGGCG | 54110 | 0.0 | 54.84242 | 10 |
GAGCGGT | 493860 | 0.0 | 54.7309 | 9 |
GACCGAT | 426960 | 0.0 | 54.605396 | 32 |
CCGATAT | 290070 | 0.0 | 54.59063 | 34 |
TATCGTA | 279100 | 0.0 | 54.453617 | 38 |
CCGTCTT | 344280 | 0.0 | 54.440655 | 47 |
AGACCGA | 432270 | 0.0 | 54.431786 | 31 |
CTGCTTG | 184185 | 0.0 | 54.39726 | 54 |