FastQCFastQC Report
Wed 16 Nov 2016
SRR1945520.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945520.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88686066
Sequences flagged as poor quality0
Sequence length40-101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC231900.07.130144694-95
TGGTCGC285400.06.36173394-95
TATGCCG213150.05.786838594-95
CGTATGC273400.05.639468794-95
CGCCGTA203100.05.550940592-93
GTATGCC254550.05.524478494-95
TGCCGTC172150.05.481886494-95
GCCGTCT179500.05.27222994-95
CTCGGTG480050.05.24411594-95