Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945729.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 181135816 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG | 221173 | 0.12210340554625597 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AATGCCG | 132145 | 0.0 | 40.803356 | 24 |
GAGCGGT | 164930 | 0.0 | 39.61084 | 9 |
GCGGTTC | 164715 | 0.0 | 38.988007 | 11 |
AGCGGTT | 169385 | 0.0 | 38.487957 | 10 |
AGAGCGG | 176730 | 0.0 | 37.460926 | 8 |
GTTCAGC | 169435 | 0.0 | 37.391533 | 14 |
CAGCAGG | 169710 | 0.0 | 37.17799 | 17 |
TGCCGAG | 135805 | 0.0 | 35.31602 | 26 |
ATGCCGA | 143590 | 0.0 | 34.67311 | 25 |
GAATGCC | 159365 | 0.0 | 34.578903 | 23 |
CGGTTCA | 186190 | 0.0 | 34.495056 | 12 |
GGTTCAG | 189150 | 0.0 | 33.882576 | 13 |
CAGGAAT | 171275 | 0.0 | 33.56323 | 20 |
GGAATGC | 169430 | 0.0 | 32.960674 | 22 |
GCAGGAA | 183290 | 0.0 | 32.456413 | 19 |
AAGAGCG | 214970 | 0.0 | 31.794994 | 7 |
TCAGCAG | 205390 | 0.0 | 30.990171 | 16 |
AGCAGGA | 195360 | 0.0 | 30.957424 | 18 |
TCGGAAG | 226420 | 0.0 | 30.347782 | 3 |
TTCAGCA | 221320 | 0.0 | 28.800377 | 15 |