Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945975.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 50893718 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 319225 | 0.6272385130125491 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 165354 | 0.32490060954084743 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG | 55819 | 0.10967758339054734 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
TGGCTGATGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAT | 51590 | 0.10136810991093242 | Illumina Paired End PCR Primer 2 (97% over 41bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGGCAT | 11580 | 0.0 | 40.544163 | 1 |
CCGAGAT | 84455 | 0.0 | 38.694942 | 17 |
CGAGATC | 86915 | 0.0 | 38.240845 | 18 |
AACCGGG | 18165 | 0.0 | 32.48015 | 16 |
GGCTGAT | 21605 | 0.0 | 30.631395 | 2 |
ATCAGCC | 21725 | 0.0 | 30.590801 | 2 |
CGGCATT | 21565 | 0.0 | 28.677366 | 1 |
TGCCGTC | 52860 | 0.0 | 27.146315 | 45 |
TATGCCG | 62580 | 0.0 | 26.997736 | 43 |
GCCGTCT | 50270 | 0.0 | 26.871588 | 46 |
AGGGGCG | 19525 | 0.0 | 26.727331 | 30 |
ATGCCGT | 54640 | 0.0 | 26.696127 | 44 |
CGCCGTA | 20450 | 0.0 | 26.41127 | 56 |
CAGCCAA | 31950 | 0.0 | 26.19021 | 4 |
CGTATGC | 66055 | 0.0 | 26.100063 | 41 |
GAACCGG | 25990 | 0.0 | 26.024555 | 15 |
GGTCGCC | 25045 | 0.0 | 25.880436 | 53 |
GTATGCC | 66280 | 0.0 | 25.875626 | 42 |
TCAGCCA | 26365 | 0.0 | 25.339607 | 3 |
GCCGTAT | 21235 | 0.0 | 25.23846 | 57 |