Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945943.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41556590 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 46570 | 0.11206405530386396 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 8495 | 0.0 | 22.005579 | 56 |
GGTCGCC | 9925 | 0.0 | 21.794527 | 53 |
GCCGTAT | 8685 | 0.0 | 21.687567 | 57 |
CGAGATC | 25995 | 0.0 | 20.970774 | 18 |
CCGAGAT | 26230 | 0.0 | 20.846893 | 17 |
TGGTCGC | 11680 | 0.0 | 18.458727 | 52 |
CCGTATC | 9990 | 0.0 | 17.873468 | 58 |
TATGCCG | 9290 | 0.0 | 17.826424 | 63 |
CGTATGC | 10945 | 0.0 | 16.44305 | 61 |
CGTATCA | 11700 | 0.0 | 15.321188 | 59 |
GTATGCC | 11300 | 0.0 | 15.028282 | 62 |
ATCAGCC | 15405 | 0.0 | 15.020475 | 2 |
GGCTGAT | 15550 | 0.0 | 14.857903 | 2 |
GTCGCCG | 15105 | 0.0 | 14.529615 | 54 |
ATGCCGT | 10090 | 0.0 | 14.502615 | 64 |
CGGCATT | 8870 | 0.0 | 14.107058 | 1 |
GAGACCG | 27050 | 0.0 | 14.01066 | 50 |
TCGTATG | 15225 | 0.0 | 13.936039 | 60 |
TGCCGTC | 9375 | 0.0 | 13.928002 | 65 |
CGAGACC | 27555 | 0.0 | 13.739332 | 49 |