FastQCFastQC Report
Wed 16 Nov 2016
SRR1945781.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945781.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43996288
Sequences flagged as poor quality0
Sequence length101
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC334000.07.790816394-95
TATGCCG239200.07.72085194-95
TGCCGTC188150.07.37437494-95
ATGCCGT223200.07.202899594-95
GTATGCC283550.07.11445694-95
GCCGTCT179500.07.04382594-95
TCGTATG438400.06.88066894-95
GGTCGCC99650.06.629162394-95
CGCCGTA119250.06.413216694-95
CGGCTAC785400.06.177074494-95
CTCGTAT464600.06.02888994-95
CACGGCT888200.05.583668792-93
ACGGCTA840700.05.530452392-93
TCTCGTA522050.05.37994492-93
GTCGCCG134750.05.288950494-95
GCTACAT766300.05.227972594-95
CATCTCG561700.05.21678690-91
GTCACGG970100.05.132795390-91
TGGTCGC126550.05.12649194-95
TCACGGC924850.05.08937390-91