FastQCFastQC Report
Tue 15 Nov 2016
SRR1946128.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946128.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37664914
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC20350.016.6290868
TATACTG178350.012.5197865
TCGCGCG29550.011.7691979
TATACCG125050.011.6534475
CTATACT186350.011.4535714
TCTATAC228200.011.1248093
GTATAGA237350.011.0766491
CATACAC917200.011.0458143
ACACATG955750.010.4115256
ACATGAC748950.010.3859328
TATACAG154650.010.3348795
CTAGGCT97300.010.2432434
TAGGCTG114600.010.2138895
GTGCTAG54750.010.1363981
GTACTAG140800.010.1210551
GTATATA485400.09.999211
GTATAGG139000.09.9814371
CATGACA762550.09.97201259
CACATGA920000.09.9626077
ATACCGT114000.09.9368786