FastQCFastQC Report
Tue 15 Nov 2016
SRR1945877.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945877.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37981770
Sequences flagged as poor quality0
Sequence length101
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG345800.08.78481794-95
CGTATGC463750.08.55699294-95
GTATGCC395450.08.40034594-95
TGCCGTC269100.08.385138594-95
ATGCCGT313850.08.32117194-95
GCCGTCT251800.07.83285994-95
GGTCGCC119050.07.81617394-95
CGCCGTA130100.07.388994-95
TCGTATG580100.07.240720394-95
GTCGCCG145500.06.93230594-95
CTCGTAT613200.06.50585492-93
CCGTCTT305200.06.19083794-95
TGGTCGC145200.06.13129694-95
TCTCGTA672600.06.117748792-93
TCGCCGT170000.05.86359994-95
GCCGTAT141900.05.856737694-95
CATCTCG759050.05.652217494-95
CCGTATC170650.05.64701894-95
ATCTCGT820800.05.50354290-91
CAGATCA1225650.05.426456594-95