FastQCFastQC Report
Tue 15 Nov 2016
SRR1946124.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946124.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29725294
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG147300.013.1481515
TATACCG88650.012.6202635
GTATAGA193050.011.7665541
CATACAC870850.011.6550033
CTATACT153300.011.6225174
TCTATAC178900.011.5360553
ACACATG863050.011.4099366
ACATGAC724100.011.3527628
TATACAG143000.010.9794515
CACATGA849650.010.9036957
GTATTAG164300.010.8772211
GTATATA416350.010.8438771
CATGACA753250.010.7752789
GTGTATG842800.010.5688411
TAGACTG71300.010.5487425
TCATACA960800.010.4905042
GTATAGG103950.010.4510371
ATCATAC951800.010.2182561
GATTGAG808950.09.773087
TTGAGTA822050.09.7019459