Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945972.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43147404 |
Sequences flagged as poor quality | 0 |
Sequence length | 110 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 9780 | 0.0 | 16.105064 | 1 |
ACCCTCG | 22835 | 0.0 | 13.48337 | 4 |
GCTCGAC | 19205 | 0.0 | 11.936361 | 6 |
GGAACCC | 29060 | 0.0 | 10.947137 | 1 |
CAAAGCC | 96660 | 0.0 | 10.567832 | 2 |
CGAAGTC | 17565 | 0.0 | 10.3403425 | 8 |
AACCCTC | 30870 | 0.0 | 10.292259 | 3 |
AGCCGAA | 19130 | 0.0 | 9.575717 | 5 |
CCCTCGA | 33755 | 0.0 | 9.565981 | 5 |
TGCTCGA | 25585 | 0.0 | 9.465497 | 5 |
ACAAAGC | 116255 | 0.0 | 9.359128 | 1 |
ATGCTCG | 25800 | 0.0 | 9.286324 | 4 |
AATGCTC | 28270 | 0.0 | 8.987412 | 3 |
CGAGATC | 31980 | 0.0 | 8.731251 | 18-19 |
AAGCCGA | 21180 | 0.0 | 8.52672 | 4 |
GAGCGTG | 11300 | 0.0 | 8.494331 | 104 |
AAGCCAA | 102500 | 0.0 | 8.425875 | 4 |
CGGCTAC | 12480 | 0.0 | 8.3945055 | 26-27 |
CTCGACC | 72615 | 0.0 | 8.116623 | 7 |
AAAGCCA | 109405 | 0.0 | 7.9791546 | 3 |