FastQCFastQC Report
Tue 15 Nov 2016
SRR1946024.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946024.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79046774
Sequences flagged as poor quality0
Sequence length99
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG393000.013.7961435
TATACCG231950.013.391645
CATACAC2501900.013.3037313
ACATGAC2023700.013.2489118
ACACATG2360550.013.0484466
CTATACT405550.012.7500554
CATGACA2104550.012.5631489
CCGTGCG47850.012.5359899
CACATGA2336750.012.4729277
TCTATAC471850.012.0425633
TCATACA2726800.011.9197282
TATACAG381850.011.8121955
CTAGTAC224400.011.8114623
GTGTATG2311350.011.7587771
ATCATAC2576150.011.75464251
GTATAGG271950.011.701281
GTCGCGC32650.011.6783738
GTATATA1162900.011.5176951
GTATAGA523350.011.3162481
GATTGAG2131750.011.0940917