FastQCFastQC Report
Tue 15 Nov 2016
SRR1946119.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946119.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41568954
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG154300.015.168955
ATACCGT139050.013.8237426
CCGTGAG115500.013.793719
TACCGTG123700.013.7152767
CTAGTAC140250.013.6077343
TCTATAC276000.012.7736443
ACCGTGA155550.012.20614058
CATACAC1505750.011.9815983
TATACTG198100.011.9811645
GTATAGA297150.011.6922951
ACATGAC1210150.011.66227158
ACACATG1470950.011.5117056
CTATACT213400.011.4763244
CATGACA1244550.011.2416469
CTATACC214850.011.2238424
CACATGA1407500.011.209087
TAGTACT284750.011.093414
TCATACA1614200.011.0544392
GTACTAG188050.010.9754481
GTACTAC163550.010.9483266