FastQCFastQC Report
Tue 15 Nov 2016
SRR1946145.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946145.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32653572
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG170850.013.4518555
TATACCG111700.013.0015055
CCGTGCG23200.012.5599349
CTATACT180050.012.1902344
CATACAC977900.011.8374533
GTATAGA228200.011.4771331
TACCGTG90000.011.4363287
TCTATAC220550.011.4007923
ATACCGT103800.011.2289896
ACACATG1007850.011.0985796
ACATGAC808600.011.0899178
CACATGA973250.010.8218747
CATGACA829400.010.7721359
GTATTAG190700.010.6765531
TCATACA1077750.010.5619912
GTATAGG125950.010.4906411
GTATATA469350.010.4691961
TAGACTG81300.010.4634855
ATCATAC1053650.010.2686681
CTAGTAC102100.010.0810723