FastQCFastQC Report
Tue 15 Nov 2016
SRR1946160.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946160.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28156280
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC129700.016.3737694
TATACCG102400.013.4407625
CTAGTAC98800.013.3175493
TATACTG131400.013.2627875
CCGTGAG75300.012.9132249
GTATAGA190000.012.2392131
ATACCGT88950.012.0934116
ACCGTGA103950.012.0203318
GTCGCGC16900.011.9520148
TAGACCG70200.011.7100075
TACCGTG84950.011.6675167
TCTATAC186100.011.4891593
ACATGAC678300.011.19125658
CATACAC861400.011.1178943
AGACCGT61550.011.0662196
CTATACT148550.011.00995354
TAGGCTG88200.010.9712195
ACACATG839150.010.83739956
CATGACA696300.010.8277449
TAGTACT191600.010.7928484