FastQCFastQC Report
Tue 15 Nov 2016
SRR1946168.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946168.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35721248
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC159900.013.55798894
TATACCG112500.012.2302415
TATACTG174750.011.9043725
TCTATAC221750.011.589213
CTATACT189300.011.0955144
ACATGAC884100.010.564688
GTATATA483850.010.4185691
CATACAC1118250.010.3857953
ACACATG1117350.010.347166
GTATAGA236550.010.3269881
TACCGTG91050.010.3150327
TATACAG158100.010.306655
GTATAGG127350.010.2009221
CATGACA910400.010.1099699
CACATGA1083200.010.0794047
GAGCGCG25650.09.7030687
GTATTAG208650.09.700171
CCGTGAG86550.09.6578179
GTGTATG1047250.09.5192971
TAATACT270300.09.456784