Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946245.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26529484 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 9500 | 0.0 | 15.8806 | 5 |
TCTATAC | 16710 | 0.0 | 15.413086 | 3 |
ATACCGT | 8615 | 0.0 | 15.057028 | 6 |
TACCGTG | 7005 | 0.0 | 14.559185 | 7 |
CCGTGAG | 6240 | 0.0 | 14.31049 | 9 |
CTATACT | 12885 | 0.0 | 14.152487 | 4 |
TATACTG | 12305 | 0.0 | 13.979285 | 5 |
ACTGTGC | 3820 | 0.0 | 13.410614 | 8 |
CATACAC | 58775 | 0.0 | 13.146031 | 3 |
CTATACC | 13300 | 0.0 | 12.968804 | 4 |
ACCGTGA | 8430 | 0.0 | 12.934388 | 8 |
GTATAGA | 17865 | 0.0 | 12.910713 | 1 |
GTGTATG | 56015 | 0.0 | 12.310919 | 1 |
GTATAGG | 8980 | 0.0 | 12.265823 | 1 |
GTACTAG | 9405 | 0.0 | 12.26209 | 1 |
TAGGACT | 9140 | 0.0 | 12.135322 | 4 |
TATACAG | 12030 | 0.0 | 12.111043 | 5 |
ACACATG | 57375 | 0.0 | 12.066061 | 6 |
ACATGAC | 43630 | 0.0 | 11.838534 | 8 |
GTATATA | 38745 | 0.0 | 11.808854 | 1 |