FastQCFastQC Report
Tue 15 Nov 2016
SRR1946211.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946211.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27530270
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG83800.014.1315515
TATACTG132600.014.0341135
CATACAC798850.013.2564933
TAGGCTG77200.013.0265625
CTATACT138300.012.8470194
GTCGCGC14300.012.8153698
ACATGAC693750.012.7608758
ACACATG813750.012.6058816
GTGTATG758050.012.3948061
CATGACA708200.012.354519
CACATGA784850.012.2675967
TCTATAC158450.011.9252233
GAGCGCG13800.011.9177187
TCATACA892150.011.891222
TATACAG128900.011.8849685
GTATAGA166150.011.8427611
GTATATA394250.011.7967461
TAGACAG89700.011.7875465
ATCATAC882050.011.6983421
ACAGTGC47850.011.4896418