Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945914.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 63570760 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 47630 | 0.0 | 17.721392 | 4 |
CGTCCGC | 13060 | 0.0 | 17.533699 | 34-35 |
AGAGCGT | 25925 | 0.0 | 16.698368 | 9 |
GTCCGCA | 14255 | 0.0 | 15.762017 | 34-35 |
ACGTCCG | 15645 | 0.0 | 15.169032 | 32-33 |
GGTCGCC | 13800 | 0.0 | 15.118446 | 44-45 |
GATCGGA | 57350 | 0.0 | 14.982805 | 2 |
CGGAAGA | 57795 | 0.0 | 14.800278 | 5 |
AAGAGCG | 31040 | 0.0 | 14.455884 | 8 |
TATGCCG | 14160 | 0.0 | 14.452739 | 48-49 |
ATCGGAA | 60660 | 0.0 | 14.1793 | 3 |
CGCCGTA | 14725 | 0.0 | 13.962096 | 46-47 |
TGCCGTC | 14790 | 0.0 | 13.790746 | 50-51 |
TCCGCAC | 16020 | 0.0 | 13.744104 | 36-37 |
ATGCCGT | 15120 | 0.0 | 13.722073 | 50-51 |
CCGCACA | 15325 | 0.0 | 13.639946 | 36-37 |
GCCGTCT | 15315 | 0.0 | 13.563887 | 52-53 |
AGAGCAC | 36660 | 0.0 | 12.694617 | 9 |
AGTCACG | 19205 | 0.0 | 12.653153 | 28-29 |
CGCACAT | 16475 | 0.0 | 12.617528 | 38-39 |