FastQCFastQC Report
Tue 15 Nov 2016
SRR1946130.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946130.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27274798
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG132500.012.1689715
GAGCGCG16050.012.0071047
ACATGAC690850.011.7698118
CATACAC898700.011.4561013
CTATACT136750.011.4478624
ACACATG870750.011.417066
CATGACA704050.011.38145359
CACATGA846850.011.2395257
TCTATAC165550.011.2169663
TATACCG91850.011.1571425
TATACAG123550.011.148095
TAGACCG71150.010.967535
ACAGTGC47850.010.9030548
GTATAGA175150.010.874361
GCGCGCC19050.010.8551199
GTCGCGC13000.010.8463868
GTATATA388500.010.6040531
TAGAGCG47350.010.5235325
GCCGTGC25950.010.5050428
GTACTAG113050.010.4830781