Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946078.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 17902344 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 2345 | 0.0 | 18.218697 | 63 |
CGTATGC | 2550 | 0.0 | 16.628086 | 61 |
ATGCCGT | 2685 | 0.0 | 15.779614 | 64 |
TGCCGTC | 3045 | 0.0 | 13.918136 | 65 |
GTATGCC | 3015 | 0.0 | 13.827653 | 62 |
GCCGTCT | 3055 | 0.0 | 13.52988 | 66 |
CGGCATT | 2675 | 0.0 | 12.951789 | 1 |
GGTCGCC | 2335 | 0.0 | 12.747714 | 63 |
CGCCGTA | 2390 | 0.0 | 12.604444 | 66 |
CGAGATC | 6445 | 0.0 | 11.722285 | 18 |
GCCGTAT | 2600 | 0.0 | 11.586684 | 67 |
GAGACCG | 3875 | 0.0 | 11.56262 | 50 |
GAGCGGT | 3905 | 0.0 | 11.38135 | 29 |
TGGTCGC | 2690 | 0.0 | 11.330675 | 62 |
AATGCCG | 3795 | 0.0 | 11.242433 | 13 |
CGAGACC | 3965 | 0.0 | 11.210941 | 49 |
GAGATCG | 7175 | 0.0 | 10.676447 | 19 |
AAGAGCG | 6925 | 0.0 | 10.609803 | 27 |
AGCGTCG | 3000 | 0.0 | 10.149491 | 30 |
AGAGCGG | 4345 | 0.0 | 10.146873 | 28 |