FastQCFastQC Report
Tue 15 Nov 2016
SRR1946225.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946225.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27256930
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG92300.015.1740665
TACCGTG67400.014.7830267
CATACAC673800.014.6339593
TATACTG131300.014.4611895
CTATACT133000.014.3116854
TCTATAC170700.014.0693743
ACACATG716200.013.6626146
GTATAGA186600.013.5950481
ACATGAC564750.013.456788
GTGTATG633100.013.0766711
ATACCGT84850.013.07216556
CATGACA578150.012.9579169
CACATGA677900.012.7498047
TCATACA761050.012.7094272
ATCATAC745600.012.5680821
GTATAGG91200.012.3340791
TATACAG114350.012.3302675
GATTGAG633850.011.7450837
GTATATA381950.011.6447171
TATACTA241200.011.5938345