FastQCFastQC Report
Tue 15 Nov 2016
SRR1945930.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945930.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59663980
Sequences flagged as poor quality0
Sequence length51
%GC36

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATGAG189650.08.2124261
GTATGAA256750.08.1407351
GTATGAC87300.08.0578871
TATGAGT644400.07.06510972
ATATGAG620400.06.8430741
ATGAGTC564550.06.7359273
GTAGGAA143000.06.3808881
GTAGGAC49800.06.3181481
GTAGGTA85750.06.29025461
TGAGTCT585850.06.26496364
GTATGAT687250.06.26246261
GTATGGA161400.06.1686671
GGTGGCA77250.06.1677741
GAGTCTT605650.06.0529235
GTAGCCA411000.05.9330641
GTATTAA258500.05.86859751
GTAGTAA179200.05.7816791
ACACTAC382150.05.771774337
CTATGAG119650.05.76655961
CTATGAA275650.05.7154591