Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946144.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35253024 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 13570 | 0.0 | 13.544471 | 5 |
ATACCGT | 11305 | 0.0 | 12.970795 | 6 |
GTATAGA | 24610 | 0.0 | 12.936402 | 1 |
TATACTG | 16360 | 0.0 | 12.470146 | 5 |
TCTATAC | 22360 | 0.0 | 12.405996 | 3 |
CCGTGAG | 9595 | 0.0 | 12.195752 | 9 |
TACCGTG | 10865 | 0.0 | 11.808713 | 7 |
CTATACT | 17240 | 0.0 | 11.590524 | 4 |
CATACAC | 109850 | 0.0 | 11.367878 | 3 |
ACATGAC | 83785 | 0.0 | 11.347056 | 8 |
ACACATG | 108220 | 0.0 | 11.174159 | 6 |
CACATGA | 104810 | 0.0 | 10.846828 | 7 |
CATGACA | 88490 | 0.0 | 10.818102 | 9 |
GTCGCGC | 1845 | 0.0 | 10.698097 | 8 |
ACCGTGA | 12445 | 0.0 | 10.686738 | 8 |
CTAGTAC | 13660 | 0.0 | 10.566693 | 3 |
ACTGTGC | 5475 | 0.0 | 10.4719925 | 8 |
TCATACA | 118485 | 0.0 | 10.345039 | 2 |
GTATAGG | 13245 | 0.0 | 10.189817 | 1 |
GAGCGCG | 2010 | 0.0 | 10.054073 | 7 |