Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946163.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33835548 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGAGC | 15075 | 0.0 | 14.431785 | 94 |
TATACCG | 10440 | 0.0 | 12.687658 | 5 |
CTATACT | 17485 | 0.0 | 12.471945 | 4 |
TATACTG | 16760 | 0.0 | 12.247298 | 5 |
TCTATAC | 20835 | 0.0 | 11.3449745 | 3 |
CATACAC | 95760 | 0.0 | 11.301573 | 3 |
ACATGAC | 76600 | 0.0 | 11.043913 | 8 |
ACACATG | 93210 | 0.0 | 10.915193 | 6 |
GTACTAG | 12205 | 0.0 | 10.8387575 | 1 |
CATGACA | 77115 | 0.0 | 10.811789 | 9 |
GTATAGG | 11350 | 0.0 | 10.784212 | 1 |
GCGGGCG | 3165 | 0.0 | 10.563797 | 94 |
CACATGA | 91745 | 0.0 | 10.382956 | 7 |
GTATAGA | 22270 | 0.0 | 10.33712 | 1 |
GTATTAG | 19785 | 0.0 | 10.255389 | 1 |
TAGAGCG | 6035 | 0.0 | 10.195931 | 5 |
TCATACA | 106415 | 0.0 | 10.039985 | 2 |
GAGCGCG | 2060 | 0.0 | 10.032771 | 7 |
GTATATA | 44375 | 0.0 | 10.025463 | 1 |
CCAAAGC | 22410 | 0.0 | 10.002314 | 94 |