Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945954.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 74730596 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 45950 | 0.0 | 17.689451 | 4 |
AGAGCGT | 25195 | 0.0 | 16.46545 | 9 |
GGTCGCC | 11300 | 0.0 | 14.903789 | 44-45 |
CCGTACG | 13185 | 0.0 | 14.356695 | 34-35 |
GATCGGA | 57670 | 0.0 | 14.26279 | 2 |
CGGAAGA | 57945 | 0.0 | 14.188291 | 5 |
AAGAGCG | 31750 | 0.0 | 13.28598 | 8 |
ATCGGAA | 63350 | 0.0 | 13.194934 | 3 |
CGCCGTA | 12645 | 0.0 | 12.925289 | 46-47 |
TGCCGTC | 12925 | 0.0 | 12.621353 | 50-51 |
TATGCCG | 13205 | 0.0 | 12.587301 | 48-49 |
GAGCGTC | 16570 | 0.0 | 12.5040245 | 10-11 |
GCACACG | 16035 | 0.0 | 12.267074 | 12-13 |
AGCGTCG | 17475 | 0.0 | 12.082933 | 10-11 |
TGGTCGC | 13860 | 0.0 | 12.016201 | 42-43 |
ATGCCGT | 14080 | 0.0 | 11.786344 | 50-51 |
CGTACGT | 15865 | 0.0 | 11.770052 | 34-35 |
GAAGAGC | 72490 | 0.0 | 11.464872 | 7 |
GCCGTCT | 14270 | 0.0 | 11.331715 | 52-53 |
GCGTCGT | 18610 | 0.0 | 11.182641 | 12-13 |