Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946156.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38336294 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 2585 | 0.0 | 14.181307 | 8 |
GCTGTCC | 10920 | 0.0 | 12.782506 | 8 |
TATACCG | 13320 | 0.0 | 12.772963 | 5 |
TAGGCTG | 12660 | 0.0 | 12.547878 | 5 |
CTAGGCT | 11465 | 0.0 | 12.502968 | 4 |
TATACTG | 16800 | 0.0 | 12.449102 | 5 |
CTATACT | 18425 | 0.0 | 12.371477 | 4 |
CTGTCCC | 13750 | 0.0 | 11.416315 | 9 |
TCTATAC | 20615 | 0.0 | 11.194004 | 3 |
CATACAC | 134635 | 0.0 | 11.107837 | 3 |
ACATGAC | 93765 | 0.0 | 11.042208 | 8 |
ACACATG | 131790 | 0.0 | 10.930325 | 6 |
CGCCTAG | 11575 | 0.0 | 10.84668 | 1 |
TAGACAG | 13190 | 0.0 | 10.725288 | 5 |
CACATGA | 127655 | 0.0 | 10.702602 | 7 |
TCGCGCG | 3470 | 0.0 | 10.699903 | 9 |
CATGACA | 97540 | 0.0 | 10.513666 | 9 |
GTATATA | 50275 | 0.0 | 10.503506 | 1 |
TATACAG | 15870 | 0.0 | 10.365218 | 5 |
TCATACA | 145685 | 0.0 | 10.200843 | 2 |