Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946190.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31015762 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 14525 | 0.0 | 18.803116 | 5 |
ATACCGT | 13265 | 0.0 | 18.172869 | 6 |
CCGTGAG | 10980 | 0.0 | 17.931183 | 9 |
TACCGTG | 11265 | 0.0 | 17.686893 | 7 |
ACCGTGA | 13180 | 0.0 | 16.613646 | 8 |
TCTATAC | 23710 | 0.0 | 15.702333 | 3 |
CTAGTAC | 13515 | 0.0 | 14.782348 | 3 |
GTATAGA | 25255 | 0.0 | 13.669092 | 1 |
GTACTAC | 13930 | 0.0 | 13.628361 | 6 |
TATGAGC | 13655 | 0.0 | 13.071007 | 94 |
TGTAGGG | 18835 | 0.0 | 12.828828 | 2 |
CTATACC | 20960 | 0.0 | 12.716018 | 4 |
TATACTG | 14750 | 0.0 | 12.620397 | 5 |
CCTAGTA | 15175 | 0.0 | 12.515326 | 2 |
GTAGGGA | 18210 | 0.0 | 12.365058 | 3 |
TAGGCTG | 9375 | 0.0 | 12.234562 | 5 |
TAGTACT | 26220 | 0.0 | 12.22675 | 4 |
ATGTAGG | 21760 | 0.0 | 12.146982 | 1 |
GTACTAG | 18215 | 0.0 | 12.083916 | 1 |
GATACCC | 16105 | 0.0 | 11.87485 | 8 |