FastQCFastQC Report
Tue 15 Nov 2016
SRR1945982.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945982.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44423396
Sequences flagged as poor quality0
Sequence length76
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC53950.010.83149253
GCCGTAT56650.09.33014357
CGCCGTA50900.09.21355556
AATGCCG95000.08.88642134
GAGACCG94450.08.44147740
TGGTCGC69800.08.22077952
CGTGTAG100650.08.06263125
TGCCGAG109250.07.760710236
CGAGACC106850.07.65810839
GCGTCGT110150.07.49445221
TCGGTGG112350.07.469506348
ATGCCGA117800.07.405120435
CCGTATC69500.07.40425858
AGCGTCG116150.07.287945720
CTCGGTG111900.07.248742647
GAGCGTC117850.07.241631519
TATGCCG46350.07.09645453
GTCGCCG84000.07.082654
GTCGTGT121750.06.895471623
TCGTGTA125400.06.861747724