FastQCFastQC Report
Tue 15 Nov 2016
SRR1945944.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945944.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37204186
Sequences flagged as poor quality0
Sequence length72
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT122650.011.8268561
CCGAGAT228950.011.26911217
ATTCCTG127200.010.1772935
GGCATTC145200.09.8186212
AACCGAG127450.09.41328815
GCTGAAC145100.08.96961411
GCATTCC158050.08.916633
TGAACCG148450.08.723536513
CTGAACC149850.08.70802712
GAACCGA146600.08.58795114
CGAGATC321900.08.00472418
TTCCTGC174900.07.96547176
CATTCCT220100.06.896334
AATGCCG198400.06.85859613
CCTGCTG194150.06.85534868
TCCTGCT207050.06.7923937
CTGCTGA204750.06.48470979
TGCCGAG211850.06.4233315
GAATGCC227200.06.14846312
GGAATGC236200.05.99712911