FastQCFastQC Report
Wed 16 Nov 2016
SRR1945850.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945850.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22656458
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGTAC85800.015.6182863
TATACCG69100.015.1021425
GTACTAG108850.013.9246111
CCGTGAG64250.013.7520319
CATACAC683200.013.2069643
TATACTG106050.013.1646535
TCTATAC139850.013.1458943
ATACCGT64550.013.1069466
CCTAGTA92450.013.0736262
GTACTAC92750.013.0240026
TACCGTG53750.012.9415847
ACATGAC525750.012.8548658
ACCGTGA84200.012.7265488
ACACATG672900.012.5592716
CTATACT109050.012.5465684
CATGACA529200.012.5399859
GACCGTG45000.012.2201797
CACATGA648350.012.17153557
TACTAGG117050.012.053682
TAGTACT165900.011.9314524