Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946249.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20705074 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 10675 | 0.0 | 17.257063 | 5 |
TATACCG | 7475 | 0.0 | 15.905891 | 5 |
CATACAC | 47230 | 0.0 | 14.410672 | 3 |
CTATACT | 11265 | 0.0 | 14.103249 | 4 |
TATACAG | 9570 | 0.0 | 13.798856 | 5 |
ACATGAC | 37780 | 0.0 | 13.53292 | 8 |
GTATAGA | 14195 | 0.0 | 13.493735 | 1 |
ACACATG | 47700 | 0.0 | 13.46738 | 6 |
GTGTATG | 45290 | 0.0 | 13.435982 | 1 |
TCTATAC | 13495 | 0.0 | 13.340113 | 3 |
GTATAGG | 7645 | 0.0 | 13.0506315 | 1 |
CATGACA | 38615 | 0.0 | 13.009006 | 9 |
CACATGA | 46140 | 0.0 | 12.88367 | 7 |
GTATTAG | 12495 | 0.0 | 12.881399 | 1 |
TAGGCTG | 6320 | 0.0 | 12.78969 | 5 |
CTAGGCT | 5435 | 0.0 | 12.713099 | 4 |
TAATACT | 17085 | 0.0 | 12.710442 | 4 |
GTATATA | 30450 | 0.0 | 12.704503 | 1 |
TATACTA | 19870 | 0.0 | 12.653323 | 5 |
GTCGCGC | 1005 | 0.0 | 12.624735 | 8 |