FastQCFastQC Report
Tue 15 Nov 2016
SRR1946027.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946027.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74107602
Sequences flagged as poor quality0
Sequence length99
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG296500.014.6635355
TATACTG373450.014.3191465
TACCGTG223500.014.2516387
TCTATAC506700.013.9123363
CTAGTAC258350.013.7150763
CCGTGAG211050.013.5941169
CTATACT386550.013.5090814
GTATAGA526800.013.1055871
CATACAC2028250.012.9715893
ATACCGT256850.012.853776
ACCGTGA270800.012.723938
ACACATG2001950.012.5102186
GTGTATG1850650.012.3280531
GTACTAG337100.012.2138591
ACATGAC1622800.012.19805058
TATACAG354200.012.0516325
TCATACA2222400.011.6967852
CCTAGTA286950.011.60751152
GTATTAG425550.011.5993371
GTATATA1149750.011.5564161