FastQCFastQC Report
Tue 15 Nov 2016
SRR1946142.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946142.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37414628
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC16350.012.3595798
TATACCG123150.012.1007415
TATACTG186150.012.0459895
CTATACT192650.011.5694314
CTAGGCT91250.011.3883844
GTATAGA251600.011.1783431
TCTATAC233800.011.1622353
CATACAC858650.011.13333
GTATATA497200.011.0767571
TATACAG163450.010.8716135
GTATAGG135450.010.6944531
GTACTAG127450.010.5908041
TAGACAG127750.010.5610745
ACCGTGC45200.010.5011288
ACACATG847150.010.4799856
CCGTGCG24250.010.4648439
TAGGCTG116400.010.4600535
ACATGAC599000.010.3561948
TACCGTG95750.010.2583737
GTGTATG841000.010.1724041