FastQCFastQC Report
Tue 15 Nov 2016
SRR1946047.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946047.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57972894
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG294850.014.0910745
TATACCG188350.013.2102855
CTATACT307350.012.5114414
TCTATAC375700.012.3223173
CATACAC1300500.012.2028993
TATACAG281250.012.0850375
GTATAGA391200.012.0116791
CTAGTAC188300.011.9437813
ACATGAC1023900.011.4858768
GTATATA859900.011.4373081
TACCGTG140050.011.4310267
ACACATG1266900.011.3208236
GAGCGCG33100.011.205037
GTATAGG199150.011.1840891
ATACCGT170500.011.17926
GTGTATG1269850.011.17894651
CATGACA1049000.011.1752439
GTACTAG212100.010.988631
TAGTACT343600.010.8908524
CACATGA1221100.010.8113027