Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946167.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20297649 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGAGC | 9075 | 0.0 | 14.09465 | 94 |
TATACTG | 9575 | 0.0 | 13.298056 | 5 |
AGACCGC | 2695 | 0.0 | 12.959987 | 94 |
TATACCG | 6425 | 0.0 | 12.578039 | 5 |
GTATAGA | 13155 | 0.0 | 12.070537 | 1 |
CTAGTAC | 6815 | 0.0 | 11.942391 | 3 |
GTACTAG | 8310 | 0.0 | 11.680292 | 1 |
CTATACT | 9840 | 0.0 | 11.378708 | 4 |
TCTATAC | 12200 | 0.0 | 11.182766 | 3 |
CATACAC | 56030 | 0.0 | 10.789308 | 3 |
ACACATG | 55825 | 0.0 | 10.71414 | 6 |
ACATGAC | 42390 | 0.0 | 10.551911 | 8 |
TACCGTG | 4710 | 0.0 | 10.374569 | 7 |
CACATGA | 54370 | 0.0 | 10.3527355 | 7 |
CATGACA | 43020 | 0.0 | 10.342777 | 9 |
ATACCGT | 6105 | 0.0 | 10.312804 | 6 |
GTATATA | 28455 | 0.0 | 10.299575 | 1 |
TAGTACT | 12915 | 0.0 | 10.272254 | 4 |
GCTGTCC | 4815 | 0.0 | 10.148332 | 8 |
GTACTAC | 7620 | 0.0 | 10.11222 | 6 |