Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946064.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43500326 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 17495 | 0.0 | 18.42941 | 3 |
GATCGGA | 20100 | 0.0 | 16.300331 | 1 |
ATCGGAA | 23010 | 0.0 | 14.4617195 | 2 |
AGAGCAC | 18830 | 0.0 | 14.100661 | 8 |
GAGCACA | 18965 | 0.0 | 13.975637 | 9 |
CGGAAGA | 23690 | 0.0 | 13.887714 | 4 |
GCACACG | 10940 | 0.0 | 12.027755 | 10-11 |
ACGTCTG | 11745 | 0.0 | 11.083199 | 14-15 |
GAAGAGC | 30645 | 0.0 | 10.550564 | 6 |
TATGCCG | 7045 | 0.0 | 10.410281 | 46-47 |
CGTCTGA | 12955 | 0.0 | 10.283852 | 16-17 |
TCCAGTC | 13035 | 0.0 | 9.860238 | 24-25 |
CCAGTCA | 13475 | 0.0 | 9.660767 | 26-27 |
CACGTCT | 13955 | 0.0 | 9.5300455 | 14-15 |
ACACGTC | 14335 | 0.0 | 9.310281 | 12-13 |
GTATGCC | 8360 | 0.0 | 9.278907 | 44-45 |
TGCCGTC | 6520 | 0.0 | 9.192581 | 48-49 |
ACTCCAG | 15285 | 0.0 | 9.039326 | 22-23 |
CACACGT | 15170 | 0.0 | 9.014664 | 12-13 |
CTCCAGT | 14710 | 0.0 | 9.00902 | 24-25 |