Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946159.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35165394 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGGGCG | 3125 | 0.0 | 16.724907 | 94 |
TATGAGC | 15920 | 0.0 | 13.664371 | 94 |
CATACAC | 97445 | 0.0 | 10.715333 | 3 |
TATACCG | 10465 | 0.0 | 10.548305 | 5 |
ACATGAC | 72895 | 0.0 | 10.516672 | 8 |
GTATAGG | 11375 | 0.0 | 10.510789 | 1 |
CTATACT | 18990 | 0.0 | 10.344828 | 4 |
ACACATG | 95335 | 0.0 | 10.278218 | 6 |
TATACTG | 16880 | 0.0 | 10.185039 | 5 |
GTATATA | 49870 | 0.0 | 10.090004 | 1 |
CATGACA | 73175 | 0.0 | 10.039927 | 9 |
GTCGCGC | 1505 | 0.0 | 9.987789 | 8 |
CACATGA | 93470 | 0.0 | 9.920438 | 7 |
GTGTATG | 92675 | 0.0 | 9.726558 | 1 |
CCAAAGC | 25665 | 0.0 | 9.686868 | 94 |
GTATAGA | 20905 | 0.0 | 9.614588 | 1 |
TCATACA | 107415 | 0.0 | 9.574442 | 2 |
TATACAG | 15995 | 0.0 | 9.515132 | 5 |
TCTATAC | 21335 | 0.0 | 9.515077 | 3 |
ATCATAC | 107570 | 0.0 | 9.351179 | 1 |