FastQCFastQC Report
Tue 15 Nov 2016
SRR1946209.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946209.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21678404
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG76400.017.6533625
TACCGTG60850.015.2136887
CCGTGAG62800.014.8158449
ATACCGT65250.014.6919516
TATACTG100100.014.0370545
ACCGTGA80600.013.6428048
GTATAGA138400.013.6039351
TCTATAC132600.013.5407533
GTCGCGC13100.013.2725158
CTAGTAC83650.013.260783
TCGCGCG13400.012.6246279
CATACAC650450.012.5591123
ACATGAC483100.012.304858
GCCGTGC18400.012.2587528
ACACATG637900.012.0078396
TAGTACT164050.011.9763114
CTATACT105700.011.82854
CACATGA613000.011.7596327
CATGACA500950.011.6881159
TATACAG100300.011.5727055