FastQCFastQC Report
Wed 16 Nov 2016
SRR1945839.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945839.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42562706
Sequences flagged as poor quality0
Sequence length101
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGTAG403650.05.63814594-95
ACGTCTG405500.05.50111194-95
GCACACG484200.05.480296694-95
GTCGTGT474650.05.27524794-95
AGCGTCG522250.05.240222594-95
CGTCGTG493200.05.23578994-95
GCGTCGT491850.05.216350694-95
GAGCGTC558800.05.186556394-95
GTAGGGA393950.05.07143194-95
ACACGTC472800.05.04968594-95
CACGTCT459550.05.02985894-95
TCGTGTA474000.05.02687794-95
CACACGT497200.05.021659494-95
CGTCTGA416700.05.011192394-95