FastQCFastQC Report
Tue 15 Nov 2016
SRR1946258.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946258.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31366804
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG113950.018.4377925
AGACCGC71850.016.81427694
ATACCGT100300.016.3976026
CCGTGAG76550.015.3455989
TACCGTG95600.015.3356787
TCTATAC181650.014.8018453
ACCGTGA106500.013.9426228
GTATAGA210000.013.7775281
CTAGTAC101650.013.5030123
CTATACC166000.012.5161094
ACATGAC822300.012.0632688
CATACAC1007550.012.0133963
CTATACT142000.011.9170674
TATACTG137850.011.7973665
ACACATG1016950.011.7968066
GTACTAG124950.011.7848381
CACATGA985600.011.5568177
CATGACA858700.011.4912399
GTGTATG983700.011.4731621
GTATTAG164850.011.1013591