Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945962.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 74877464 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 39240 | 0.0 | 7.4171124 | 4 |
AGAGCGT | 21790 | 0.0 | 6.9636807 | 9 |
GGTCGCC | 9720 | 0.0 | 6.631635 | 44-45 |
TATGCCG | 11235 | 0.0 | 5.9397607 | 48-49 |
GATCGGA | 51415 | 0.0 | 5.9130416 | 2 |
CGGAAGA | 53470 | 0.0 | 5.7710433 | 5 |
GAGCGTC | 13535 | 0.0 | 5.742605 | 10-11 |
GCACACG | 13880 | 0.0 | 5.599914 | 12-13 |
TGCCGTC | 11310 | 0.0 | 5.5769954 | 50-51 |
AAGAGCG | 28555 | 0.0 | 5.492618 | 8 |
CGCCGTA | 11380 | 0.0 | 5.4864964 | 46-47 |
ATCGGAA | 58345 | 0.0 | 5.4581923 | 3 |
ATGCCGT | 12580 | 0.0 | 5.2749267 | 50-51 |
GCCGTCT | 12245 | 0.0 | 5.254308 | 52-53 |
AGCGTCG | 14925 | 0.0 | 5.114509 | 10-11 |
GCGTCGT | 15770 | 0.0 | 5.0611916 | 12-13 |