FastQCFastQC Report
Tue 15 Nov 2016
SRR1946115.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946115.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30321494
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC15350.015.3081888
TATACCG101150.014.4042115
TATACTG143350.013.2457745
CATACAC1068600.012.0926843
ACATGAC884600.011.9641998
ACACATG1068250.011.7552596
CTATACT157650.011.688274
CACATGA1034550.011.6156327
CATGACA906050.011.5927219
TCTATAC182400.011.5198243
ATACCGT86400.011.4228426
GTATAGA203850.011.2781341
TAGGCTG86600.011.1257595
TCATACA1172350.011.0829322
TACCGTG77700.010.8871737
ATCATAC1180100.010.7369031
GTATATA437600.010.7224081
CCGTGAG72550.010.6234719
CTAGTAC95050.010.4844813
CCGTGCC24400.010.4007339