Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946088.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 54999574 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 5850 | 0.0 | 12.331719 | 63 |
CGCCGTA | 6670 | 0.0 | 12.131894 | 66 |
GGTCGCC | 6350 | 0.0 | 12.077656 | 63 |
CGGCATT | 8555 | 0.0 | 11.329379 | 1 |
GCCGTAT | 7715 | 0.0 | 10.80716 | 67 |
ATGCCGT | 7045 | 0.0 | 10.5374775 | 64 |
CGTATGC | 7130 | 0.0 | 10.516854 | 61 |
TGCCGTC | 7425 | 0.0 | 9.812741 | 65 |
GAGCGTC | 8540 | 0.0 | 9.793978 | 29 |
AGCGTCG | 8665 | 0.0 | 9.653984 | 30 |
TGGTCGC | 8230 | 0.0 | 9.491759 | 62 |
GTATGCC | 8195 | 0.0 | 9.404059 | 62 |
CGAGATC | 19080 | 0.0 | 9.292946 | 18 |
GCCGTCT | 8180 | 0.0 | 9.078729 | 66 |
CGTGTAG | 9115 | 0.0 | 8.988359 | 35 |
CCGTATC | 9360 | 0.0 | 8.870325 | 68 |
GCGTCGT | 9415 | 0.0 | 8.663567 | 31 |
AAGAGCG | 20150 | 0.0 | 8.47359 | 27 |
GAGATCG | 21695 | 0.0 | 8.045694 | 19 |
AATGCCG | 10575 | 0.0 | 8.0022 | 13 |