FastQCFastQC Report
Tue 15 Nov 2016
SRR1946155.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946155.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34356878
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG121050.013.7831985
TACCGTG93300.012.5933797
TATACTG160700.012.3419285
CTAGTAC115800.012.1352593
ATACCGT104450.011.744056
GTATAGA238850.011.6150361
TCTATAC215700.011.613513
CTATACT180950.011.6100854
CATACAC988050.011.3352623
TAGTACT220650.011.0760744
TAGGCTG102400.011.0153355
ACCGTGA110350.010.9883048
CCGTGAG74700.010.9474249
ACATGAC784650.010.7875058
CTAGGCT97400.010.7604974
ACACATG981650.010.6957766
GCCGTGC33900.010.67515858
GTCGCGC17700.010.6211128
CATGACA809200.010.4428039
TATACAG159850.010.4082355