Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946057.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 74095926 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 12115 | 0.0 | 26.361366 | 63 |
CGGCATT | 15255 | 0.0 | 26.250269 | 1 |
GGTCGCC | 11145 | 0.0 | 24.373102 | 63 |
CGTATGC | 13315 | 0.0 | 24.119904 | 61 |
TGCCGTC | 13560 | 0.0 | 22.625343 | 65 |
ATGCCGT | 13830 | 0.0 | 22.256557 | 64 |
GTATGCC | 14625 | 0.0 | 22.029877 | 62 |
CGCCGTA | 11130 | 0.0 | 21.28909 | 66 |
GCCGTCT | 14320 | 0.0 | 21.081615 | 66 |
CCGAGAT | 34975 | 0.0 | 20.424496 | 17 |
GCCGTAT | 11600 | 0.0 | 20.308517 | 67 |
CCTGCTG | 21930 | 0.0 | 18.688036 | 8 |
CGAGATC | 38395 | 0.0 | 18.592278 | 18 |
GGCATTC | 22570 | 0.0 | 18.18547 | 2 |
TGGTCGC | 13705 | 0.0 | 18.05408 | 62 |
GCTGAAC | 23600 | 0.0 | 17.203909 | 11 |
GAGACCG | 20930 | 0.0 | 17.164282 | 50 |
CGAGACC | 21430 | 0.0 | 16.978119 | 49 |
TCGTATG | 20120 | 0.0 | 16.485502 | 60 |
GCATTCC | 26095 | 0.0 | 15.943521 | 3 |