Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946119.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41568954 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 15430 | 0.0 | 15.16895 | 5 |
ATACCGT | 13905 | 0.0 | 13.823742 | 6 |
CCGTGAG | 11550 | 0.0 | 13.79371 | 9 |
TACCGTG | 12370 | 0.0 | 13.715276 | 7 |
CTAGTAC | 14025 | 0.0 | 13.607734 | 3 |
TCTATAC | 27600 | 0.0 | 12.773644 | 3 |
ACCGTGA | 15555 | 0.0 | 12.2061405 | 8 |
CATACAC | 150575 | 0.0 | 11.981598 | 3 |
TATACTG | 19810 | 0.0 | 11.981164 | 5 |
GTATAGA | 29715 | 0.0 | 11.692295 | 1 |
ACATGAC | 121015 | 0.0 | 11.6622715 | 8 |
ACACATG | 147095 | 0.0 | 11.511705 | 6 |
CTATACT | 21340 | 0.0 | 11.476324 | 4 |
CATGACA | 124455 | 0.0 | 11.241646 | 9 |
CTATACC | 21485 | 0.0 | 11.223842 | 4 |
CACATGA | 140750 | 0.0 | 11.20908 | 7 |
TAGTACT | 28475 | 0.0 | 11.09341 | 4 |
TCATACA | 161420 | 0.0 | 11.054439 | 2 |
GTACTAG | 18805 | 0.0 | 10.975448 | 1 |
GTACTAC | 16355 | 0.0 | 10.948326 | 6 |