Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946242.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27880898 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 9320 | 0.0 | 15.983889 | 5 |
TACCGTG | 7125 | 0.0 | 14.839139 | 7 |
CTATACT | 13425 | 0.0 | 14.635639 | 4 |
ATACCGT | 8360 | 0.0 | 14.614671 | 6 |
CCGTGAG | 7570 | 0.0 | 14.587364 | 9 |
TCTATAC | 17160 | 0.0 | 14.189342 | 3 |
CATACAC | 77615 | 0.0 | 13.777977 | 3 |
TATACTG | 13145 | 0.0 | 13.692328 | 5 |
GTATAGA | 18555 | 0.0 | 13.573702 | 1 |
ACACATG | 78200 | 0.0 | 13.136066 | 6 |
GTACTAG | 12450 | 0.0 | 13.120958 | 1 |
GTCGCGC | 1150 | 0.0 | 13.07546 | 8 |
ACATGAC | 63100 | 0.0 | 13.009733 | 8 |
CTAGGCT | 7000 | 0.0 | 12.892968 | 4 |
CTAGTAC | 10280 | 0.0 | 12.620184 | 3 |
CATGACA | 64580 | 0.0 | 12.464193 | 9 |
CACATGA | 75490 | 0.0 | 12.399694 | 7 |
TCATACA | 85165 | 0.0 | 12.38544 | 2 |
GTGTATG | 74120 | 0.0 | 12.296326 | 1 |
TATACAG | 12200 | 0.0 | 12.249163 | 5 |