Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946139.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35438744 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 18330 | 0.0 | 11.976607 | 5 |
CTATACT | 18595 | 0.0 | 11.151234 | 4 |
GTATATA | 49985 | 0.0 | 10.735026 | 1 |
CATACAC | 107635 | 0.0 | 10.676482 | 3 |
ACACATG | 109690 | 0.0 | 10.399231 | 6 |
ACATGAC | 90175 | 0.0 | 10.32938 | 8 |
TATACCG | 11345 | 0.0 | 10.151751 | 5 |
TCTATAC | 22555 | 0.0 | 10.110658 | 3 |
CACATGA | 106290 | 0.0 | 10.081297 | 7 |
CATGACA | 92200 | 0.0 | 10.056556 | 9 |
GTATAGA | 23005 | 0.0 | 9.873748 | 1 |
GTGTATG | 104365 | 0.0 | 9.868392 | 1 |
GTATTAG | 20125 | 0.0 | 9.86129 | 1 |
TATACAG | 16980 | 0.0 | 9.745056 | 5 |
ATCATAC | 110610 | 0.0 | 9.685376 | 1 |
TCATACA | 117605 | 0.0 | 9.587589 | 2 |
TATACTA | 31970 | 0.0 | 9.513515 | 5 |
GTATTAT | 26355 | 0.0 | 9.493051 | 1 |
GAGCGCG | 2145 | 0.0 | 9.421393 | 7 |
CCGTGCG | 2195 | 0.0 | 9.420442 | 9 |