Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945876.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 45946948 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC | 64872 | 0.14118892075269068 | TruSeq Adapter, Index 12 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCCGTCT | 22635 | 0.0 | 18.924997 | 48-49 |
TGCCGTC | 22850 | 0.0 | 18.622364 | 48-49 |
ATGCCGT | 24430 | 0.0 | 17.536942 | 46-47 |
TATGCCG | 26135 | 0.0 | 16.792248 | 46-47 |
GTATGCC | 28625 | 0.0 | 15.341994 | 44-45 |
CCGTCTT | 30090 | 0.0 | 14.857746 | 50-51 |
CGTATGC | 30600 | 0.0 | 14.568883 | 44-45 |
CTGCTTG | 28970 | 0.0 | 14.448786 | 56-57 |
TCGTATG | 37285 | 0.0 | 12.077001 | 42-43 |
CGTCTTC | 37710 | 0.0 | 11.685741 | 50-51 |
CTTCTGC | 39150 | 0.0 | 11.642593 | 54-55 |
CTCGTAT | 38780 | 0.0 | 10.86388 | 42-43 |
TTCTGCT | 49175 | 0.0 | 9.4426155 | 54-55 |
TCTGCTT | 50950 | 0.0 | 9.220945 | 56-57 |
TCTCGTA | 45420 | 0.0 | 9.141134 | 40-41 |
TGCTTGA | 42540 | 0.0 | 8.819763 | 58-59 |
GCTTGAA | 42025 | 0.0 | 8.537959 | 58-59 |
AATCTCG | 56490 | 0.0 | 8.197728 | 38-39 |
ATCTCGT | 53370 | 0.0 | 8.1539545 | 40-41 |
GGTCGCC | 19425 | 0.0 | 8.025829 | 94-95 |