FastQCFastQC Report
Tue 15 Nov 2016
SRR1946252.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946252.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29106366
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG141650.017.0573735
ATACCGT113100.016.9952016
CCGTGAG102400.015.9245089
TACCGTG123000.015.6643727
CTAGTAC119850.015.0611733
TCTATAC208500.014.6094743
ACCGTGA132200.014.5032478
GTATAGA222550.014.0953741
CTATACC173400.012.2533534
GTACTAC127350.012.2150346
TAGTACT249500.012.1145154
CCTAGTA132900.012.0662812
GTACTAG159500.011.1752411
ACATGAC724700.010.8421288
CTATACT136350.010.8253044
CATACAC927450.010.7805913
ACACATG920450.010.6915856
TATACTG127600.010.6834855
AGTACTA237050.010.6289525
CACATGA879700.010.3259867