Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946051.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 48632376 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 15950 | 0.0 | 15.02185 | 5 |
CTAGGCT | 14210 | 0.0 | 13.853322 | 4 |
GCTGTCC | 13440 | 0.0 | 13.807678 | 8 |
CTATACT | 24785 | 0.0 | 13.724093 | 4 |
CATACAC | 133940 | 0.0 | 13.5117 | 3 |
TCTATAC | 28905 | 0.0 | 13.409574 | 3 |
TATACAG | 22115 | 0.0 | 13.404676 | 5 |
TATACTG | 23965 | 0.0 | 13.389278 | 5 |
TACCGTG | 12190 | 0.0 | 13.103824 | 7 |
CTGTCCC | 16555 | 0.0 | 12.997479 | 9 |
ACATGAC | 112785 | 0.0 | 12.9964905 | 8 |
TAGGCTG | 16470 | 0.0 | 12.864617 | 5 |
ACACATG | 141295 | 0.0 | 12.841213 | 6 |
GTCGCGC | 2565 | 0.0 | 12.821343 | 8 |
CACATGA | 135545 | 0.0 | 12.581892 | 7 |
CATGACA | 116835 | 0.0 | 12.489681 | 9 |
TATAGTG | 23025 | 0.0 | 12.364794 | 5 |
TCATACA | 147655 | 0.0 | 12.177087 | 2 |
ATACCGT | 12665 | 0.0 | 12.092971 | 6 |
CGCCTAG | 12845 | 0.0 | 12.005473 | 1 |