FastQCFastQC Report
Tue 15 Nov 2016
SRR1946028.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946028.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21947924
Sequences flagged as poor quality0
Sequence length99
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTGAG57850.016.2367789
TATACCG73700.015.9627565
CTAGTAC76150.015.5713093
TACCGTG56200.015.5552277
ACCGTGA72400.014.5152578
TCTATAC146250.013.6718543
TATACTG110000.013.654155
CATACAC662750.013.5483813
GCCGTGC20750.013.4458428
ACATGAC535950.013.3960848
ATACCGT70200.013.314166
ACACATG637100.013.3055826
CTATACT110300.013.1111174
TGTAGGG103150.013.0781372
CATGACA558400.012.6825439
CACATGA619500.012.6477547
GACCGTG31000.012.6000557
CCTAGTA87050.012.5044392
GTGTATG636500.012.4760741
TAGCGGG59250.012.3999699