Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946228.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19189376 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 24002 | 0.12507962739382458 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 8105 | 0.0 | 20.061666 | 5 |
CCGTGAG | 6295 | 0.0 | 18.886166 | 9 |
TACCGTG | 6575 | 0.0 | 18.367863 | 7 |
ATACCGT | 7675 | 0.0 | 17.939554 | 6 |
ACCGTGA | 7790 | 0.0 | 17.553938 | 8 |
TCTATAC | 13545 | 0.0 | 16.240486 | 3 |
CTATACT | 9695 | 0.0 | 15.417414 | 4 |
GTATAGA | 14990 | 0.0 | 15.2310705 | 1 |
TATACTG | 9550 | 0.0 | 14.860982 | 5 |
CATACAC | 64770 | 0.0 | 14.644667 | 3 |
GTGTATG | 61075 | 0.0 | 14.274728 | 1 |
CTATACC | 11050 | 0.0 | 14.2074585 | 4 |
TATACAG | 9020 | 0.0 | 14.119089 | 5 |
ACACATG | 67610 | 0.0 | 14.088515 | 6 |
CTAGTAC | 7800 | 0.0 | 14.0408535 | 3 |
ACATGAC | 52645 | 0.0 | 14.013983 | 8 |
CATGACA | 53995 | 0.0 | 13.794144 | 9 |
CACATGA | 63375 | 0.0 | 13.480227 | 7 |
GATTGAG | 58255 | 0.0 | 13.446947 | 7 |
GTATAGG | 6645 | 0.0 | 13.318436 | 1 |