Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946217.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 36556206 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 38796 | 0.10612698702923383 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 16990 | 0.0 | 14.5261965 | 5 |
CTATACT | 18420 | 0.0 | 14.495864 | 4 |
CATACAC | 101905 | 0.0 | 13.788404 | 3 |
ACATGAC | 88905 | 0.0 | 13.582747 | 8 |
TATACCG | 12375 | 0.0 | 13.56154 | 5 |
ACACATG | 106380 | 0.0 | 13.305251 | 6 |
CATGACA | 91210 | 0.0 | 13.140533 | 9 |
CACATGA | 104110 | 0.0 | 13.053404 | 7 |
GTGTATG | 95865 | 0.0 | 12.984952 | 1 |
TCTATAC | 21770 | 0.0 | 12.869789 | 3 |
GTATAGA | 22660 | 0.0 | 12.249058 | 1 |
TCATACA | 113315 | 0.0 | 12.169374 | 2 |
ATCATAC | 109925 | 0.0 | 11.931825 | 1 |
TAGTACT | 18010 | 0.0 | 11.876352 | 4 |
GTATAGG | 12835 | 0.0 | 11.83906 | 1 |
TAATACT | 27300 | 0.0 | 11.829856 | 4 |
GTATATA | 49080 | 0.0 | 11.818683 | 1 |
GATTGAG | 93915 | 0.0 | 11.7425165 | 7 |
GTATTAG | 20320 | 0.0 | 11.668564 | 1 |
TATACAG | 15970 | 0.0 | 11.627281 | 5 |