Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946268.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40432946 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1505 | 0.0 | 12.495666 | 8 |
TATACCG | 13910 | 0.0 | 11.225238 | 5 |
GTATAGA | 28120 | 0.0 | 11.010717 | 1 |
TACCGTG | 10315 | 0.0 | 10.848764 | 7 |
TATACTG | 19640 | 0.0 | 10.656219 | 5 |
CTATACT | 20345 | 0.0 | 10.471643 | 4 |
GAGCGCG | 1670 | 0.0 | 10.417361 | 7 |
CATACAC | 106625 | 0.0 | 10.399894 | 3 |
ACATGAC | 88890 | 0.0 | 10.319062 | 8 |
ACACATG | 105880 | 0.0 | 10.2091465 | 6 |
ATACCGT | 12150 | 0.0 | 10.177566 | 6 |
TCTATAC | 25810 | 0.0 | 10.130502 | 3 |
CATGACA | 91320 | 0.0 | 10.013672 | 9 |
CACATGA | 102365 | 0.0 | 9.916848 | 7 |
TATACAG | 17865 | 0.0 | 9.872174 | 5 |
GTATAGG | 14280 | 0.0 | 9.6877775 | 1 |
GTATATA | 58315 | 0.0 | 9.642567 | 1 |
GTGTATG | 104500 | 0.0 | 9.474024 | 1 |
CCGTGAG | 8095 | 0.0 | 9.292719 | 9 |
GTGCTAG | 6190 | 0.0 | 9.274152 | 1 |