FastQCFastQC Report
Tue 15 Nov 2016
SRR1946196.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946196.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17582102
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG83950.015.0597125
CCGTGCG11350.014.9070529
TATACCG59700.013.9342645
TCTATAC110750.013.919233
GCCGTGC18550.013.681548
CATACAC438850.013.6546083
TAATACT143450.013.6294364
CTATACT92150.013.3626034
GTATAGA116300.013.0727791
ACACATG425550.013.0100756
ACATGAC335950.012.9545248
CCGTGAG43300.012.8079389
CACATGA412050.012.558067
CATGACA347250.012.4382249
GTGTATG424950.012.3836621
TAGTACT112450.011.8698164
TCATACA492100.011.7950542
ATACCGT53800.011.7933346
ATAATAC138500.011.7072373
TACACTG51750.011.6247815