FastQCFastQC Report
Tue 15 Nov 2016
SRR1946242.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946242.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27880898
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG93200.015.9838895
TACCGTG71250.014.8391397
CTATACT134250.014.6356394
ATACCGT83600.014.6146716
CCGTGAG75700.014.5873649
TCTATAC171600.014.1893423
CATACAC776150.013.7779773
TATACTG131450.013.6923285
GTATAGA185550.013.5737021
ACACATG782000.013.1360666
GTACTAG124500.013.1209581
GTCGCGC11500.013.075468
ACATGAC631000.013.0097338
CTAGGCT70000.012.8929684
CTAGTAC102800.012.6201843
CATGACA645800.012.4641939
CACATGA754900.012.3996947
TCATACA851650.012.385442
GTGTATG741200.012.2963261
TATACAG122000.012.2491635