FastQCFastQC Report
Tue 15 Nov 2016
SRR1945964.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945964.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38988212
Sequences flagged as poor quality0
Sequence length76
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6439681.651699236682103No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC4544141.1655163873634422No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA74350.025.68584356
GCCGTAT75800.025.07893257
GGTCGCC92950.023.25415853
CCGTATC89400.020.99096958
TGGTCGC104900.020.40380752
TATGCCG79200.018.6799953
CGTATCA102700.018.00044459
CGTATGC87700.017.94480351
TGCCGTC84200.017.23946455
CGAGATC193550.017.20491418
GGCTGAT132150.017.1101342
ATGCCGT83900.016.92555254
ATCAGCC129100.016.702262
GTCGCCG130200.016.68243454
TCGGTGG151650.016.59985748
GTATGCC95300.016.33060852
CTCGGTG153750.016.19213947
CCGAGAT213900.015.71515817
GAGACCG180700.015.1180940
GCCGTCT89250.014.77458556