FastQCFastQC Report
Tue 15 Nov 2016
SRR1945887.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945887.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23149356
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG78550.016.5163825
TACCGTG65600.014.97447
ATACCGT71900.014.6432466
TATACTG116250.014.2331715
TCTATAC147450.014.0619713
CCGTGAG55700.013.5848599
GTCGCGC9400.013.4996998
GTATAGA161800.013.3247671
CTATACT123500.013.0956194
CATACAC558600.013.07142453
CTAGTAC72100.012.7160363
GTATATA346300.012.7095981
ACTGTGC34250.012.62453658
GTGTATG535550.012.6219691
ACCGTGA74000.012.4483728
TATACAG108400.012.3151885
CTATACC118250.012.2854744
ACATGAC398850.012.1489088
ACACATG560400.012.0357186
GTACTAG90300.011.9376951