FastQCFastQC Report
Tue 15 Nov 2016
SRR1946009.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946009.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42052478
Sequences flagged as poor quality0
Sequence length76
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA75800.029.60444656
GCCGTAT75850.029.49652357
GGTCGCC99500.026.20744953
TATGCCG68950.025.22979253
CGTATGC81100.022.44069351
CCGTATC96700.022.05068258
TGGTCGC120700.021.40015252
GTATGCC85400.020.45080652
ATGCCGT81850.020.27101554
CGTATCA115650.018.43859
ATCAGCC152800.018.3717842
GGCTGAT150700.017.977452
GAGACCG184000.017.8782340
TGCCGTC81350.017.85801955
CTCGGTG176700.017.68068547
CGAGACC187400.017.57237239
TCGGTGG179850.017.48868848
AATGCCG195200.017.3715834
CGTGTAG188400.017.30346925
GCCGTCT84850.016.91609656