FastQCFastQC Report
Tue 15 Nov 2016
SRR1946096.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946096.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65359878
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG72350.08.90170863
CGTATGC80350.08.01538461
CGGCATT95350.07.87081
ATGCCGT82100.07.46091864
AATGCCG130150.06.996947313
TGCCGTC81550.06.953387365
GTATGCC91550.06.92042262
CCGAGAT221850.06.85213217
GAGACCG126900.06.72808750
CGAGATC222200.06.613814418
TGCCGAG143800.06.55218515
CGAGACC134400.06.19620149
GCCGTCT88150.05.99604666
GACCGAT143000.05.70328352
ATGCCGA164300.05.649205714
GGTCGCC61650.05.50722463
AGAGCGG190650.05.305518628
AGACCGA177700.05.2398551
GGGCGCC36350.05.19976163
GAGCGGT169900.05.191512629