FastQCFastQC Report
Tue 15 Nov 2016
SRR1945921.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945921.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20615186
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG36400.06.78506794-95
TCGGAAG153300.06.785066694-95
GATCGGA206150.06.49707694-95
ATCGGAA197300.05.861706394-95
CGGAAGA173150.05.636915794-95
GAGCGTC48000.05.046393492-93