Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946126.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39922008 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATAGA | 24455 | 0.0 | 11.730464 | 1 |
TATACTG | 18690 | 0.0 | 11.619883 | 5 |
TATACCG | 12730 | 0.0 | 11.410356 | 5 |
CTATACT | 20185 | 0.0 | 11.17915 | 4 |
TAGACCG | 8885 | 0.0 | 11.16334 | 5 |
ACATGAC | 101895 | 0.0 | 11.162555 | 8 |
TAGGCTG | 11420 | 0.0 | 11.15507 | 5 |
CATACAC | 116825 | 0.0 | 11.074113 | 3 |
CATGACA | 102050 | 0.0 | 10.988307 | 9 |
ACACATG | 113510 | 0.0 | 10.985986 | 6 |
CACATGA | 109385 | 0.0 | 10.725387 | 7 |
TCTATAC | 23085 | 0.0 | 10.711546 | 3 |
CTAGGCT | 10185 | 0.0 | 10.52374 | 4 |
GTGTATG | 112285 | 0.0 | 10.370075 | 1 |
GTATATA | 51770 | 0.0 | 10.164943 | 1 |
ATCATAC | 124185 | 0.0 | 10.042859 | 1 |
TCATACA | 128235 | 0.0 | 10.030188 | 2 |
TAGTACT | 21650 | 0.0 | 9.966693 | 4 |
TATACAG | 17755 | 0.0 | 9.9548855 | 5 |
GTACTAG | 13845 | 0.0 | 9.850494 | 1 |