Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945960.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18770688 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 8775 | 0.0 | 15.802414 | 5 |
TATACCG | 5895 | 0.0 | 14.592034 | 5 |
CTATACT | 9950 | 0.0 | 13.844732 | 4 |
TCTATAC | 11365 | 0.0 | 13.652212 | 3 |
CCGTGAG | 4405 | 0.0 | 13.229673 | 9 |
TAGACTG | 4770 | 0.0 | 13.204895 | 5 |
CATACAC | 54745 | 0.0 | 13.166072 | 3 |
TAGACCG | 4355 | 0.0 | 12.952144 | 5 |
GTGTATG | 53285 | 0.0 | 12.816868 | 1 |
ACACATG | 53790 | 0.0 | 12.7399435 | 6 |
ACATGAC | 41835 | 0.0 | 12.739467 | 8 |
GTATAGA | 11855 | 0.0 | 12.426885 | 1 |
CACATGA | 51905 | 0.0 | 12.38714 | 7 |
GTATAGG | 6515 | 0.0 | 12.353817 | 1 |
CATGACA | 42720 | 0.0 | 12.3104 | 9 |
ACAGTGC | 3190 | 0.0 | 12.22828 | 8 |
CTAGTAC | 5700 | 0.0 | 12.208024 | 3 |
TATACAG | 9020 | 0.0 | 12.037991 | 5 |
TACCGTG | 4510 | 0.0 | 11.984377 | 7 |
GACCGTG | 3020 | 0.0 | 11.983341 | 7 |