FastQCFastQC Report
Wed 16 Nov 2016
SRR1945792.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945792.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65919692
Sequences flagged as poor quality0
Sequence length101
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTCT511200.024.68889248-49
TGCCGTC525300.024.34721248-49
ATGCCGT563150.023.10101146-47
TATGCCG612750.022.2546-47
CTGCTTG540550.022.10028656-57
GTATGCC662950.021.02734444-45
CCGTCTT631450.020.39024550-51
CGTATGC710200.020.09954344-45
CGTCTTC656350.019.35977650-51
CTTCTGC683350.018.62970254-55
TCGTATG813250.018.04414642-43
CTCGTAT830950.016.72882542-43
TCTGCTT809200.016.08973756-57
TGCTTGA655000.015.92941958-59
TTCTGCT800150.015.83309754-55
GCTTGAA670150.014.68681858-59
TCTCGTA939850.014.41509240-41
AATCTCG1120600.013.40816538-39
ATCTCGT1047850.013.31655840-41
GTAATCT1194050.012.36055836-37