FastQCFastQC Report
Tue 15 Nov 2016
SRR1946148.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946148.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44257744
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG215250.012.8605445
CTATACT225000.012.0734954
TCTATAC264350.012.0719713
TATACCG135700.011.9488595
GTATAGG151250.011.7199961
CATACAC1255200.011.7047923
ACATGAC998700.011.3884358
GTCGCGC19550.011.2988668
GTATAGA280000.011.2511861
ACACATG1258050.011.22621256
CATGACA1015500.011.0288159
CACATGA1242950.010.8369557
GTATATA556650.010.6262481
CTAGTAC126400.010.5970623
TAGTACT225400.010.5716254
TCATACA1388950.010.5709282
TATACAG192050.010.4740985
ATCATAC1369350.010.2874771
GAGCGCG29350.010.2484127
GTGTATG1203600.010.2470211