Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945997.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 73493738 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 156263 | 0.21262083580508587 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGGCAT | 15880 | 0.0 | 40.87372 | 1 |
CGGCATT | 19350 | 0.0 | 35.557705 | 2 |
AACCGGG | 20140 | 0.0 | 27.028244 | 16 |
GGCATTC | 28715 | 0.0 | 26.860348 | 3 |
CGAGATC | 55455 | 0.0 | 25.365873 | 18 |
CCGAGAT | 56395 | 0.0 | 25.079594 | 17 |
GCGGTTC | 102215 | 0.0 | 25.04634 | 11 |
GAGCGGT | 104735 | 0.0 | 24.83399 | 9 |
CCGGGAT | 15405 | 0.0 | 24.548246 | 18 |
AGCGGTT | 104840 | 0.0 | 24.522638 | 10 |
TGAACCG | 29650 | 0.0 | 24.518198 | 14 |
GCATTCC | 29920 | 0.0 | 24.37607 | 4 |
GACCGAT | 67500 | 0.0 | 24.186182 | 32 |
CCGATAT | 41185 | 0.0 | 24.166567 | 34 |
CGAGACC | 80130 | 0.0 | 23.964985 | 29 |
GAGACCG | 79450 | 0.0 | 23.903118 | 30 |
AGACCGA | 80565 | 0.0 | 22.986805 | 31 |
CTGAACC | 34175 | 0.0 | 22.305712 | 13 |
TATGCCG | 14655 | 0.0 | 22.093462 | 43 |
AATGCCG | 106800 | 0.0 | 21.942667 | 24 |