FastQCFastQC Report
Tue 15 Nov 2016
SRR1946235.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946235.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25802034
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG88850.016.4487085
TATACTG116400.015.1393465
CTATACT127400.014.5000044
CTAGTAC94450.014.0841393
CCGTGAG78000.013.7353459
CATACAC705900.013.6840433
TCTATAC148900.013.6059353
ATACCGT71550.013.397776
GTCGCGC20000.013.3919638
TAGACCG76650.013.1812055
ACCGTGA100900.013.179378
ACATGAC505550.013.0869348
GTGTATG679100.012.9776031
TACCGTG68050.012.8436227
ACACATG694000.012.7565566
TAATACT205100.012.7195664
GACCGTG60350.012.6136417
AGACCGT76200.012.5801916
TAGTACT179900.012.51553254
CTAGGCT65900.012.4823874