Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946069.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 45911872 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 35 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 9030 | 0.0 | 22.82368 | 48-49 |
TATGCCG | 10160 | 0.0 | 22.2976 | 46-47 |
GCCGTCT | 9535 | 0.0 | 21.417704 | 48-49 |
CGTATGC | 11270 | 0.0 | 20.393404 | 44-45 |
ATGCCGT | 10240 | 0.0 | 20.195635 | 46-47 |
GTATGCC | 12525 | 0.0 | 18.706488 | 44-45 |
GGGGCGC | 1995 | 0.0 | 18.023277 | 42-43 |
GGGCCCC | 3895 | 0.0 | 17.436735 | 44-45 |
GGCGCCC | 1605 | 0.0 | 16.252596 | 44-45 |
GGGCGCC | 2145 | 0.0 | 14.133432 | 42-43 |
GAGCACA | 36905 | 0.0 | 14.124372 | 9 |
AGAGCAC | 37520 | 0.0 | 13.879919 | 8 |
TCGTATG | 17515 | 0.0 | 13.685959 | 42-43 |
CTCGTAT | 18020 | 0.0 | 13.576291 | 42-43 |
ACTGACC | 19555 | 0.0 | 13.541865 | 32-33 |
GCGCCCG | 1175 | 0.0 | 13.200211 | 44-45 |
CCCGGGG | 5470 | 0.0 | 13.190099 | 38-39 |
CACTGAC | 20625 | 0.0 | 13.158032 | 30-31 |
CCGGGGG | 7845 | 0.0 | 12.941595 | 38-39 |
GGGGGCC | 5970 | 0.0 | 12.636184 | 42-43 |