Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946209.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21678404 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 7640 | 0.0 | 17.653362 | 5 |
TACCGTG | 6085 | 0.0 | 15.213688 | 7 |
CCGTGAG | 6280 | 0.0 | 14.815844 | 9 |
ATACCGT | 6525 | 0.0 | 14.691951 | 6 |
TATACTG | 10010 | 0.0 | 14.037054 | 5 |
ACCGTGA | 8060 | 0.0 | 13.642804 | 8 |
GTATAGA | 13840 | 0.0 | 13.603935 | 1 |
TCTATAC | 13260 | 0.0 | 13.540753 | 3 |
GTCGCGC | 1310 | 0.0 | 13.272515 | 8 |
CTAGTAC | 8365 | 0.0 | 13.26078 | 3 |
TCGCGCG | 1340 | 0.0 | 12.624627 | 9 |
CATACAC | 65045 | 0.0 | 12.559112 | 3 |
ACATGAC | 48310 | 0.0 | 12.30485 | 8 |
GCCGTGC | 1840 | 0.0 | 12.258752 | 8 |
ACACATG | 63790 | 0.0 | 12.007839 | 6 |
TAGTACT | 16405 | 0.0 | 11.976311 | 4 |
CTATACT | 10570 | 0.0 | 11.8285 | 4 |
CACATGA | 61300 | 0.0 | 11.759632 | 7 |
CATGACA | 50095 | 0.0 | 11.688115 | 9 |
TATACAG | 10030 | 0.0 | 11.572705 | 5 |