Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946225.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27256930 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 9230 | 0.0 | 15.174066 | 5 |
TACCGTG | 6740 | 0.0 | 14.783026 | 7 |
CATACAC | 67380 | 0.0 | 14.633959 | 3 |
TATACTG | 13130 | 0.0 | 14.461189 | 5 |
CTATACT | 13300 | 0.0 | 14.311685 | 4 |
TCTATAC | 17070 | 0.0 | 14.069374 | 3 |
ACACATG | 71620 | 0.0 | 13.662614 | 6 |
GTATAGA | 18660 | 0.0 | 13.595048 | 1 |
ACATGAC | 56475 | 0.0 | 13.45678 | 8 |
GTGTATG | 63310 | 0.0 | 13.076671 | 1 |
ATACCGT | 8485 | 0.0 | 13.0721655 | 6 |
CATGACA | 57815 | 0.0 | 12.957916 | 9 |
CACATGA | 67790 | 0.0 | 12.749804 | 7 |
TCATACA | 76105 | 0.0 | 12.709427 | 2 |
ATCATAC | 74560 | 0.0 | 12.568082 | 1 |
GTATAGG | 9120 | 0.0 | 12.334079 | 1 |
TATACAG | 11435 | 0.0 | 12.330267 | 5 |
GATTGAG | 63385 | 0.0 | 11.745083 | 7 |
GTATATA | 38195 | 0.0 | 11.644717 | 1 |
TATACTA | 24120 | 0.0 | 11.593834 | 5 |