FastQCFastQC Report
Tue 15 Nov 2016
SRR1945906.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945906.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24052830
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG122400.015.0161455
CTATACT123800.013.558454
TATACCG75350.013.350385
CCGTGCG14500.013.2896079
GAGCGCG11350.013.2514937
CATACAC640900.013.1545213
TCTATAC151150.012.9410713
ACATGAC471650.012.755288
CATGACA474500.012.6092269
ACACATG641300.012.5406556
GTATAGG85250.012.4234511
GTGTATG616900.012.3839141
GTATATA369650.012.2628031
GTATAGA164750.012.1713381
CACATGA625300.012.0716837
TAGACCG52500.011.9084565
TAATACT200750.011.7808044
ATACTGT125900.011.68557556
TCATACA704400.011.6509282
ATCATAC695550.011.4573141