FastQCFastQC Report
Tue 15 Nov 2016
SRR1946265.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946265.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32167698
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG112400.014.0170735
ATACCGT96650.011.7240826
TACCGTG85600.011.6449057
TCTATAC195900.011.5224723
TATACTG152800.011.04968555
GTATAGA212200.010.887861
GTATATA461350.010.8521941
CCGTGAG68600.010.7604679
CATACAC903000.010.6602893
CTATACT158750.010.2798574
CCGTGCG23200.010.132999
ACACATG887600.010.1017616
CTATACC162550.010.0684744
ACATGAC686250.010.0507848
TATACAG142700.09.9531785
GTATTAG184050.09.94535351
CACATGA846400.09.7715637
GTGTATG886600.09.7337021
CATGACA712700.09.6844489
GCTGTCC80550.09.5142428