Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946094.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 144226906 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG | 371126 | 0.25732091902463744 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGACCG | 67685 | 0.0 | 37.90277 | 61 |
CGAGACC | 69245 | 0.0 | 37.396717 | 60 |
ACCGCGC | 16630 | 0.0 | 36.81455 | 16 |
AATGCCG | 138020 | 0.0 | 36.296265 | 24 |
GAGCGGT | 163425 | 0.0 | 35.931564 | 9 |
CGGCATT | 44915 | 0.0 | 35.631725 | 1 |
AGCGGTT | 167240 | 0.0 | 35.101665 | 10 |
GCGGTTC | 167555 | 0.0 | 34.64753 | 11 |
AGAGCGG | 174360 | 0.0 | 34.025658 | 8 |
GTTCAGC | 168070 | 0.0 | 33.94699 | 14 |
CGAGATC | 91375 | 0.0 | 33.762016 | 29 |
CAGCAGG | 168775 | 0.0 | 33.43849 | 17 |
TGCCGAG | 141430 | 0.0 | 33.001217 | 26 |
ATGCCGA | 145405 | 0.0 | 32.917973 | 25 |
CGGTTCA | 180385 | 0.0 | 32.187775 | 12 |
GAATGCC | 159420 | 0.0 | 31.954576 | 23 |
GGAATGC | 164725 | 0.0 | 31.26522 | 22 |
GGTTCAG | 187120 | 0.0 | 31.053406 | 13 |
AGACCGA | 77010 | 0.0 | 30.785158 | 62 |
CAGGAAT | 171370 | 0.0 | 30.715513 | 20 |