FastQCFastQC Report
Tue 15 Nov 2016
SRR1945984.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945984.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59851532
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT3262890.5451639901214225Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT1706960.2851990488731349Illumina Paired End PCR Primer 2 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT1051200.051.088589
TATGCCG812750.050.91168243
GCGGTTC1048950.050.2291311
AGAGCGG1122700.050.126698
CGTATGC838900.049.93063441
ATGCCGT792050.049.86341544
AGCGGTT1066500.049.72152710
TGCCGTC785250.049.56654745
GTATGCC845950.049.277742
GCCGTCT775550.048.9198646
GAGACCG952450.048.84497530
CGAGACC964250.048.6157629
AATGCCG1017800.047.5028824
GACCGAT946600.047.30602632
AGACCGA986150.046.99854731
TCGTATG915250.046.48022540
CCGATAT609350.045.9866834
GTTCAGC1120050.045.89943714
CAGCAGG1108450.045.66706517
TGCCGAG1049700.045.60025426