FastQCFastQC Report
Tue 15 Nov 2016
SRR1946042.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946042.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126583824
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG470800.018.5370855
TACCGTG367900.017.8357897
ATACCGT452850.016.2884036
CCGTGAG350950.016.0667049
TCTATAC918950.015.7947383
ACCGTGA442700.015.02074058
TATACTG662600.014.7893725
AGACCGC180350.014.29251894
CTATACT687800.014.2611484
GTATAGA997200.014.0728511
CTAGTAC421800.013.9753193
CTATACC705600.013.7819474
CATACAC2821950.013.582043
TATACAG603800.013.1589335
GTATAGG464050.012.829311
GTACTAG564200.012.6690481
ACACATG2773000.012.6485416
TAGTACT846150.012.5606224
GTGTATG2709450.012.468011
ACATGAC2335400.012.329138