Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946034.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 54565444 |
Sequences flagged as poor quality | 0 |
Sequence length | 99 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGTAC | 15710 | 0.0 | 14.000393 | 3 |
TATACTG | 24605 | 0.0 | 13.890541 | 5 |
CATACAC | 157040 | 0.0 | 13.29509 | 3 |
TATACAG | 24900 | 0.0 | 13.240431 | 5 |
TATACCG | 16340 | 0.0 | 13.062185 | 5 |
ACATGAC | 137805 | 0.0 | 13.041867 | 8 |
ACACATG | 151180 | 0.0 | 12.983035 | 6 |
GTACTAG | 21205 | 0.0 | 12.96603 | 1 |
GTATAGG | 17455 | 0.0 | 12.819854 | 1 |
GTGTATG | 142505 | 0.0 | 12.735139 | 1 |
CTATACT | 25585 | 0.0 | 12.431568 | 4 |
CATGACA | 144165 | 0.0 | 12.318127 | 9 |
CACATGA | 151540 | 0.0 | 12.29553 | 7 |
TCTATAC | 29660 | 0.0 | 12.291366 | 3 |
TAGTACT | 32540 | 0.0 | 12.203814 | 4 |
TCATACA | 169710 | 0.0 | 12.110082 | 2 |
GTATAGA | 32300 | 0.0 | 12.084183 | 1 |
GTATATA | 73985 | 0.0 | 11.9912615 | 1 |
GATTGAG | 134780 | 0.0 | 11.802741 | 7 |
CCTAGTA | 17160 | 0.0 | 11.711035 | 2 |