Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945781.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43996288 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATGC | 33400 | 0.0 | 7.7908163 | 94-95 |
TATGCCG | 23920 | 0.0 | 7.720851 | 94-95 |
TGCCGTC | 18815 | 0.0 | 7.374374 | 94-95 |
ATGCCGT | 22320 | 0.0 | 7.2028995 | 94-95 |
GTATGCC | 28355 | 0.0 | 7.114456 | 94-95 |
GCCGTCT | 17950 | 0.0 | 7.043825 | 94-95 |
TCGTATG | 43840 | 0.0 | 6.880668 | 94-95 |
GGTCGCC | 9965 | 0.0 | 6.6291623 | 94-95 |
CGCCGTA | 11925 | 0.0 | 6.4132166 | 94-95 |
CGGCTAC | 78540 | 0.0 | 6.1770744 | 94-95 |
CTCGTAT | 46460 | 0.0 | 6.028889 | 94-95 |
CACGGCT | 88820 | 0.0 | 5.5836687 | 92-93 |
ACGGCTA | 84070 | 0.0 | 5.5304523 | 92-93 |
TCTCGTA | 52205 | 0.0 | 5.379944 | 92-93 |
GTCGCCG | 13475 | 0.0 | 5.2889504 | 94-95 |
GCTACAT | 76630 | 0.0 | 5.2279725 | 94-95 |
CATCTCG | 56170 | 0.0 | 5.216786 | 90-91 |
GTCACGG | 97010 | 0.0 | 5.1327953 | 90-91 |
TGGTCGC | 12655 | 0.0 | 5.126491 | 94-95 |
TCACGGC | 92485 | 0.0 | 5.089373 | 90-91 |