FastQCFastQC Report
Tue 15 Nov 2016
SRR1946200.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946200.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30134558
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC18150.015.0158848
TATACTG146500.014.5951535
TATACCG96350.013.9491965
CTATACT146700.013.6493634
CATACAC622900.013.4921783
TCTATAC183500.013.2686443
ACATGAC495100.012.9740388
GTATAGA188650.012.8728921
ACACATG647300.012.6023946
GTGTATG598600.012.2886881
TAGTACT162350.012.2757044
CATGACA509250.012.2352089
CACATGA621750.012.0771227
GTATATA425400.011.9483931
CTAGTAC94700.011.7633573
ATACCGT82950.011.7263526
TCATACA703450.011.66252
TATACAG128450.011.6339685
TATACTA260000.011.3506615
TCGCGCG23650.011.3251129