FastQCFastQC Report
Tue 15 Nov 2016
SRR1946222.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946222.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38922984
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG144550.018.627975
TACCGTG118700.018.051517
CCGTGAG120650.016.5522759
ATACCGT139100.016.14766
ACCGTGA149900.015.7988928
TCTATAC256000.015.1480533
TATACTG191300.014.5178245
GTATAGA283650.014.4023251
CTATACC207950.014.0370394
CTAGTAC137650.014.0007243
CATACAC1005050.013.6471013
ACATGAC881750.013.4079668
CTATACT189250.013.3377084
CATGACA897600.013.0350469
ACACATG1063400.013.0047156
TAGTACT284600.012.6513454
CACATGA1044150.012.6186987
TATACAG173650.012.5836665
GTATAGG134950.012.4506211
GTGTATG958200.012.1370261