FastQCFastQC Report
Tue 15 Nov 2016
SRR1946110.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946110.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35712628
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG171800.013.2289635
TATACCG111250.012.6204485
CTATACT180100.012.2356384
CTAGTAC118100.011.9338433
GTACTAG142050.011.7633611
TCTATAC209700.011.4704513
GTATAGA225600.011.371081
TATGAGC154650.011.30543194
CATACAC915650.011.1490843
TAGGCTG113600.011.1193035
ACATGAC724200.011.0488978
TAGTACT212250.011.0242534
CTAGGCT96350.011.0210814
GTATATA480550.010.9704321
TATACAG161650.010.951395
ACACATG897500.010.8250896
TACCGTG91250.010.6523327
CATGACA745350.010.5905169
GTGTATG866150.010.5155541
GTATAGG122600.010.4813331