FastQCFastQC Report
Tue 15 Nov 2016
SRR1946198.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946198.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24021652
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG112350.014.01388555
CTATACT116100.012.022954
CATACAC545600.011.5515773
CTAGGCT56250.011.5303754
CTAGTAC84150.011.3377993
TCTATAC140600.011.3318613
GTACTAG95000.011.1975031
TATACCG73800.011.0173365
TAGACCG66600.010.9381615
ACACATG571650.010.7867026
ACATGAC468850.010.6557588
GTATAGA149950.010.6411751
GTGTATG538800.010.5792031
CCGTGCG17950.010.4732289
GTCCTAT66650.010.4519641
AGACCGT64800.010.4441366
GTATATA336950.010.4210081
GTCGCGC15400.010.3763178
CATGACA481700.010.3617459
CACATGA558250.010.2374057