Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946112.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43626002 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGAGC | 20895 | 0.0 | 14.649879 | 94 |
TATACCG | 15350 | 0.0 | 13.535382 | 5 |
TACCGTG | 12240 | 0.0 | 13.014463 | 7 |
CCGTGAG | 12110 | 0.0 | 12.726654 | 9 |
TCTATAC | 29250 | 0.0 | 12.05283 | 3 |
ATACCGT | 14815 | 0.0 | 11.798824 | 6 |
CTAGTAC | 14860 | 0.0 | 11.672426 | 3 |
ACCGTGA | 15605 | 0.0 | 11.592537 | 8 |
GTATAGA | 31070 | 0.0 | 11.307135 | 1 |
TATACTG | 21465 | 0.0 | 11.124728 | 5 |
CATACAC | 138650 | 0.0 | 10.852241 | 3 |
TAGTACT | 30415 | 0.0 | 10.818196 | 4 |
CTATACC | 23885 | 0.0 | 10.568022 | 4 |
GTATAGG | 15900 | 0.0 | 10.529943 | 1 |
ACATGAC | 115060 | 0.0 | 10.49519 | 8 |
ACACATG | 139250 | 0.0 | 10.416909 | 6 |
CTATACT | 22895 | 0.0 | 10.388539 | 4 |
GTACTAG | 18655 | 0.0 | 10.31101 | 1 |
CACATGA | 136830 | 0.0 | 10.175559 | 7 |
GTATATA | 63995 | 0.0 | 10.126896 | 1 |