Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946066.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43120084 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC | 53311 | 0.12363380368182957 | TruSeq Adapter, Index 6 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGTC | 13970 | 0.0 | 34.982582 | 9 |
TCGGAAG | 32885 | 0.0 | 34.11637 | 3 |
GATCGGA | 37635 | 0.0 | 30.540823 | 1 |
CGGAAGA | 38215 | 0.0 | 29.79896 | 4 |
ATCGGAA | 38640 | 0.0 | 29.72671 | 2 |
AGAGCGT | 17775 | 0.0 | 27.91703 | 8 |
GAGCACA | 22980 | 0.0 | 26.603706 | 9 |
GTCACGC | 12495 | 0.0 | 26.209137 | 28-29 |
TATGCCG | 12480 | 0.0 | 25.266142 | 46-47 |
ATGCCGT | 13400 | 0.0 | 24.653667 | 46-47 |
AAGAGCG | 21520 | 0.0 | 24.520777 | 7 |
CGCCGTA | 10125 | 0.0 | 24.273794 | 46-47 |
CACGCCA | 13520 | 0.0 | 24.259974 | 30-31 |
CGTATGC | 13085 | 0.0 | 24.207273 | 44-45 |
GCCGTCT | 13705 | 0.0 | 24.124279 | 48-49 |
GGTCGCC | 10690 | 0.0 | 23.832272 | 42-43 |
AGAGCAC | 25810 | 0.0 | 23.814121 | 8 |
GCACACG | 13940 | 0.0 | 23.813183 | 10-11 |
TGCCGTC | 13570 | 0.0 | 23.152124 | 48-49 |
GAAGAGC | 50045 | 0.0 | 23.11634 | 6 |