Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946041.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28829978 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTGAGCG | 8755 | 0.0 | 18.570934 | 94 |
GAGCGCG | 1900 | 0.0 | 15.024756 | 7 |
TATACTG | 14775 | 0.0 | 14.068579 | 5 |
TATACCG | 9095 | 0.0 | 13.949587 | 5 |
CTATACT | 14880 | 0.0 | 13.780554 | 4 |
GTCGCGC | 1190 | 0.0 | 13.7624035 | 8 |
CATACAC | 67885 | 0.0 | 13.124145 | 3 |
GTATATA | 39110 | 0.0 | 12.897486 | 1 |
GCGCGCC | 2200 | 0.0 | 12.760883 | 9 |
GTATAGG | 10580 | 0.0 | 12.749232 | 1 |
TAGGCTG | 9295 | 0.0 | 12.591728 | 5 |
TATACAG | 12200 | 0.0 | 12.433114 | 5 |
TCTATAC | 18905 | 0.0 | 12.431773 | 3 |
GTATAGA | 19385 | 0.0 | 12.346171 | 1 |
GTGTATG | 64325 | 0.0 | 12.29779 | 1 |
ACACATG | 65705 | 0.0 | 12.122526 | 6 |
CTAGGCT | 7280 | 0.0 | 12.08988 | 4 |
CTAGTAC | 9770 | 0.0 | 12.027772 | 3 |
TGAGCGG | 8580 | 0.0 | 11.959618 | 94 |
GCCGTGC | 3330 | 0.0 | 11.803431 | 8 |