Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946231.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21355122 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 10145 | 0.0 | 14.407699 | 5 |
TATACCG | 6505 | 0.0 | 13.583035 | 5 |
CATACAC | 48880 | 0.0 | 13.230417 | 3 |
TACCGTG | 5420 | 0.0 | 13.007004 | 7 |
CTATACT | 10695 | 0.0 | 12.875767 | 4 |
GTCGCGC | 995 | 0.0 | 12.7534 | 8 |
GTATATA | 31015 | 0.0 | 12.688097 | 1 |
GTGTATG | 47175 | 0.0 | 12.582448 | 1 |
ACATGAC | 41400 | 0.0 | 12.498913 | 8 |
TATACAG | 9540 | 0.0 | 12.464027 | 5 |
CTAGGCT | 5285 | 0.0 | 12.272141 | 4 |
ACACATG | 51080 | 0.0 | 12.136101 | 6 |
CATGACA | 42490 | 0.0 | 12.122972 | 9 |
TCTATAC | 12510 | 0.0 | 11.946923 | 3 |
TAGGCTG | 6155 | 0.0 | 11.83559 | 5 |
CACATGA | 49065 | 0.0 | 11.628726 | 7 |
GTATAGA | 13760 | 0.0 | 11.596936 | 1 |
GATTGAG | 43975 | 0.0 | 11.360898 | 7 |
TCATACA | 55195 | 0.0 | 11.33362 | 2 |
GTATTAG | 12380 | 0.0 | 11.330723 | 1 |