Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945981.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39408300 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 593294 | 1.5055051854558557 | No Hit |
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC | 433691 | 1.1005067460408087 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 7145 | 0.0 | 18.935701 | 63 |
TGCCGTC | 7990 | 0.0 | 16.720078 | 65 |
ATGCCGT | 7865 | 0.0 | 16.71587 | 64 |
CGTATGC | 8465 | 0.0 | 16.59554 | 61 |
CGCCGTA | 6800 | 0.0 | 16.564396 | 56 |
GTATGCC | 8465 | 0.0 | 16.556873 | 62 |
GGTCGCC | 8085 | 0.0 | 16.006088 | 53 |
CGGCATT | 6870 | 0.0 | 15.996591 | 1 |
GCCGTAT | 7095 | 0.0 | 15.940884 | 57 |
CGAGATC | 22140 | 0.0 | 15.887715 | 18 |
GCCGTCT | 8215 | 0.0 | 14.9407 | 66 |
CCGAGAT | 24840 | 0.0 | 14.444567 | 17 |
GAGACCG | 18420 | 0.0 | 13.857968 | 50 |
CCGTATC | 8300 | 0.0 | 13.753049 | 58 |
TCGTATG | 11390 | 0.0 | 12.883941 | 60 |
TGGTCGC | 10015 | 0.0 | 12.780921 | 52 |
CGAGACC | 19940 | 0.0 | 12.678467 | 49 |
AGACCGA | 19875 | 0.0 | 11.999919 | 51 |
CGTATCA | 9555 | 0.0 | 11.545488 | 59 |
GACCGAT | 18750 | 0.0 | 11.452469 | 52 |