Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945944.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37204186 |
Sequences flagged as poor quality | 0 |
Sequence length | 72 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 12265 | 0.0 | 11.826856 | 1 |
CCGAGAT | 22895 | 0.0 | 11.269112 | 17 |
ATTCCTG | 12720 | 0.0 | 10.177293 | 5 |
GGCATTC | 14520 | 0.0 | 9.818621 | 2 |
AACCGAG | 12745 | 0.0 | 9.413288 | 15 |
GCTGAAC | 14510 | 0.0 | 8.969614 | 11 |
GCATTCC | 15805 | 0.0 | 8.91663 | 3 |
TGAACCG | 14845 | 0.0 | 8.7235365 | 13 |
CTGAACC | 14985 | 0.0 | 8.708027 | 12 |
GAACCGA | 14660 | 0.0 | 8.587951 | 14 |
CGAGATC | 32190 | 0.0 | 8.004724 | 18 |
TTCCTGC | 17490 | 0.0 | 7.9654717 | 6 |
CATTCCT | 22010 | 0.0 | 6.89633 | 4 |
AATGCCG | 19840 | 0.0 | 6.858596 | 13 |
CCTGCTG | 19415 | 0.0 | 6.8553486 | 8 |
TCCTGCT | 20705 | 0.0 | 6.792393 | 7 |
CTGCTGA | 20475 | 0.0 | 6.4847097 | 9 |
TGCCGAG | 21185 | 0.0 | 6.42333 | 15 |
GAATGCC | 22720 | 0.0 | 6.148463 | 12 |
GGAATGC | 23620 | 0.0 | 5.997129 | 11 |