FastQCFastQC Report
Wed 16 Nov 2016
SRR1945784.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945784.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44074778
Sequences flagged as poor quality0
Sequence length101
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC71400.07.145704748-49
TCGGAAG188950.06.4587243
TATGCCG86250.06.415156446-47
ATGCCGT82800.05.959244746-47
GCCGTCT80100.05.921017648-49
GAGCACA191500.05.83597049
AGTCACG94500.05.78565328-29
AGAGCAC204100.05.5210298
CGTATGC103750.05.44763844-45
GTATGCC95950.05.291456744-45
GCACACG97650.05.26389710-11