Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946148.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44257744 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 21525 | 0.0 | 12.860544 | 5 |
CTATACT | 22500 | 0.0 | 12.073495 | 4 |
TCTATAC | 26435 | 0.0 | 12.071971 | 3 |
TATACCG | 13570 | 0.0 | 11.948859 | 5 |
GTATAGG | 15125 | 0.0 | 11.719996 | 1 |
CATACAC | 125520 | 0.0 | 11.704792 | 3 |
ACATGAC | 99870 | 0.0 | 11.388435 | 8 |
GTCGCGC | 1955 | 0.0 | 11.298866 | 8 |
GTATAGA | 28000 | 0.0 | 11.251186 | 1 |
ACACATG | 125805 | 0.0 | 11.2262125 | 6 |
CATGACA | 101550 | 0.0 | 11.028815 | 9 |
CACATGA | 124295 | 0.0 | 10.836955 | 7 |
GTATATA | 55665 | 0.0 | 10.626248 | 1 |
CTAGTAC | 12640 | 0.0 | 10.597062 | 3 |
TAGTACT | 22540 | 0.0 | 10.571625 | 4 |
TCATACA | 138895 | 0.0 | 10.570928 | 2 |
TATACAG | 19205 | 0.0 | 10.474098 | 5 |
ATCATAC | 136935 | 0.0 | 10.287477 | 1 |
GAGCGCG | 2935 | 0.0 | 10.248412 | 7 |
GTGTATG | 120360 | 0.0 | 10.247021 | 1 |