Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946050.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 51391996 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 26025 | 0.0 | 15.008299 | 5 |
TATACCG | 16225 | 0.0 | 14.293583 | 5 |
CATACAC | 137605 | 0.0 | 14.016783 | 3 |
CTATACT | 26745 | 0.0 | 13.833617 | 4 |
GTATAGA | 33590 | 0.0 | 13.723904 | 1 |
TCTATAC | 31295 | 0.0 | 13.637697 | 3 |
ACATGAC | 106950 | 0.0 | 13.480682 | 8 |
TATACAG | 24645 | 0.0 | 13.448529 | 5 |
ACACATG | 138600 | 0.0 | 13.220251 | 6 |
CATGACA | 110070 | 0.0 | 12.966341 | 9 |
CTAGTAC | 16740 | 0.0 | 12.929973 | 3 |
TACCGTG | 12180 | 0.0 | 12.912463 | 7 |
CACATGA | 134615 | 0.0 | 12.79924 | 7 |
GTGTATG | 131020 | 0.0 | 12.639124 | 1 |
TAGACTG | 13680 | 0.0 | 12.5601225 | 5 |
TCATACA | 153370 | 0.0 | 12.404541 | 2 |
TAGGCTG | 15180 | 0.0 | 12.308644 | 5 |
GTATATA | 77570 | 0.0 | 12.279442 | 1 |
CTAGGCT | 13450 | 0.0 | 12.078304 | 4 |
ATACCGT | 15110 | 0.0 | 12.055123 | 6 |