Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946042.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 126583824 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 47080 | 0.0 | 18.537085 | 5 |
TACCGTG | 36790 | 0.0 | 17.835789 | 7 |
ATACCGT | 45285 | 0.0 | 16.288403 | 6 |
CCGTGAG | 35095 | 0.0 | 16.066704 | 9 |
TCTATAC | 91895 | 0.0 | 15.794738 | 3 |
ACCGTGA | 44270 | 0.0 | 15.0207405 | 8 |
TATACTG | 66260 | 0.0 | 14.789372 | 5 |
AGACCGC | 18035 | 0.0 | 14.292518 | 94 |
CTATACT | 68780 | 0.0 | 14.261148 | 4 |
GTATAGA | 99720 | 0.0 | 14.072851 | 1 |
CTAGTAC | 42180 | 0.0 | 13.975319 | 3 |
CTATACC | 70560 | 0.0 | 13.781947 | 4 |
CATACAC | 282195 | 0.0 | 13.58204 | 3 |
TATACAG | 60380 | 0.0 | 13.158933 | 5 |
GTATAGG | 46405 | 0.0 | 12.82931 | 1 |
GTACTAG | 56420 | 0.0 | 12.669048 | 1 |
ACACATG | 277300 | 0.0 | 12.648541 | 6 |
TAGTACT | 84615 | 0.0 | 12.560622 | 4 |
GTGTATG | 270945 | 0.0 | 12.46801 | 1 |
ACATGAC | 233540 | 0.0 | 12.32913 | 8 |