Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945877.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37981770 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 34580 | 0.0 | 8.784817 | 94-95 |
CGTATGC | 46375 | 0.0 | 8.556992 | 94-95 |
GTATGCC | 39545 | 0.0 | 8.400345 | 94-95 |
TGCCGTC | 26910 | 0.0 | 8.3851385 | 94-95 |
ATGCCGT | 31385 | 0.0 | 8.321171 | 94-95 |
GCCGTCT | 25180 | 0.0 | 7.832859 | 94-95 |
GGTCGCC | 11905 | 0.0 | 7.816173 | 94-95 |
CGCCGTA | 13010 | 0.0 | 7.3889 | 94-95 |
TCGTATG | 58010 | 0.0 | 7.2407203 | 94-95 |
GTCGCCG | 14550 | 0.0 | 6.932305 | 94-95 |
CTCGTAT | 61320 | 0.0 | 6.505854 | 92-93 |
CCGTCTT | 30520 | 0.0 | 6.190837 | 94-95 |
TGGTCGC | 14520 | 0.0 | 6.131296 | 94-95 |
TCTCGTA | 67260 | 0.0 | 6.1177487 | 92-93 |
TCGCCGT | 17000 | 0.0 | 5.863599 | 94-95 |
GCCGTAT | 14190 | 0.0 | 5.8567376 | 94-95 |
CATCTCG | 75905 | 0.0 | 5.6522174 | 94-95 |
CCGTATC | 17065 | 0.0 | 5.647018 | 94-95 |
ATCTCGT | 82080 | 0.0 | 5.503542 | 90-91 |
CAGATCA | 122565 | 0.0 | 5.4264565 | 94-95 |