FastQCFastQC Report
Tue 15 Nov 2016
SRR1946007.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946007.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43911222
Sequences flagged as poor quality0
Sequence length110
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT103150.016.4483591
CGAGATC336800.09.55039318-19
GAGCGTG108800.08.598352104
CCGAGAT373000.08.56467816-17
GGCATTC199550.07.68427232
GCATTCC222700.07.1441523
TATGCCG131750.06.808856562-63
ATTCCTG189350.06.7157265
CCTGCTG174150.06.47067078
TTCCTGC201550.06.3604616
GTTCAGC792600.06.34888943
GCTTGGT425350.06.319139
GGTCGCG86100.06.312789104
CAGGAAT804600.06.2957359
GTATGCC153900.06.268173762-63
ATGCCGT131050.06.219265564-65
CGTATGC157900.06.206736660-61
CCGGCAT70550.06.19664241
GAATGCG116750.06.0432143104
AGCTTGG453100.05.9779678