Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945982.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44423396 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 5395 | 0.0 | 10.831492 | 53 |
GCCGTAT | 5665 | 0.0 | 9.330143 | 57 |
CGCCGTA | 5090 | 0.0 | 9.213555 | 56 |
AATGCCG | 9500 | 0.0 | 8.886421 | 34 |
GAGACCG | 9445 | 0.0 | 8.441477 | 40 |
TGGTCGC | 6980 | 0.0 | 8.220779 | 52 |
CGTGTAG | 10065 | 0.0 | 8.062631 | 25 |
TGCCGAG | 10925 | 0.0 | 7.7607102 | 36 |
CGAGACC | 10685 | 0.0 | 7.658108 | 39 |
GCGTCGT | 11015 | 0.0 | 7.494452 | 21 |
TCGGTGG | 11235 | 0.0 | 7.4695063 | 48 |
ATGCCGA | 11780 | 0.0 | 7.4051204 | 35 |
CCGTATC | 6950 | 0.0 | 7.404258 | 58 |
AGCGTCG | 11615 | 0.0 | 7.2879457 | 20 |
CTCGGTG | 11190 | 0.0 | 7.2487426 | 47 |
GAGCGTC | 11785 | 0.0 | 7.2416315 | 19 |
TATGCCG | 4635 | 0.0 | 7.096454 | 53 |
GTCGCCG | 8400 | 0.0 | 7.0826 | 54 |
GTCGTGT | 12175 | 0.0 | 6.8954716 | 23 |
TCGTGTA | 12540 | 0.0 | 6.8617477 | 24 |