FastQCFastQC Report
Tue 15 Nov 2016
SRR1945961.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945961.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20405412
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG101400.016.039465
CTATACT105450.014.9805734
TATACCG65300.014.7568035
TCTATAC124600.014.452223
ACATGAC514200.014.0486238
CATACAC592100.013.8326993
CTAGTAC69350.013.76269153
CATGACA520400.013.5649529
CCGTGCG10800.013.490369
ACACATG602500.013.4728756
GTGTATG563800.013.4661551
TATACAG98650.013.1987945
CACATGA585100.013.0615967
GATTGAG530850.013.0329237
GTACTAG86300.012.926231
GTATAGA136350.012.8762081
TCATACA662050.012.3817142
ATTGAGT584750.012.3134728
TTGAGTA580450.012.266869
GTATATA321350.012.1865091