Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946149.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35328330 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 11975 | 0.0 | 13.540417 | 5 |
CTATACT | 18550 | 0.0 | 11.502717 | 4 |
TCTATAC | 21555 | 0.0 | 11.25099 | 3 |
TATACTG | 17470 | 0.0 | 10.976294 | 5 |
GTATAGA | 23155 | 0.0 | 10.924999 | 1 |
CATACAC | 98760 | 0.0 | 10.721836 | 3 |
ACACATG | 99115 | 0.0 | 10.280332 | 6 |
ACATGAC | 82815 | 0.0 | 10.198236 | 8 |
GTATATA | 48675 | 0.0 | 10.03676 | 1 |
GTATAGG | 13450 | 0.0 | 9.858499 | 1 |
CATGACA | 85295 | 0.0 | 9.852126 | 9 |
CACATGA | 95435 | 0.0 | 9.829681 | 7 |
TAGGCTG | 10760 | 0.0 | 9.827854 | 5 |
TACCGTG | 9405 | 0.0 | 9.744564 | 7 |
ATACCGT | 11050 | 0.0 | 9.740032 | 6 |
GTGTATG | 94295 | 0.0 | 9.713691 | 1 |
GTATTAG | 19815 | 0.0 | 9.4681 | 1 |
TCATACA | 110390 | 0.0 | 9.464564 | 2 |
GTATTAT | 28910 | 0.0 | 9.270661 | 1 |
ATCATAC | 109130 | 0.0 | 9.250642 | 1 |