FastQCFastQC Report
Tue 15 Nov 2016
SRR1946136.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946136.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34707510
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACAG151650.011.3460745
TATACCG109000.011.3432155
TATACTG170750.011.1231455
CTATACT176850.010.7687314
CATACAC1135650.010.707763
ACATGAC841400.010.6791468
ACACATG1114300.010.536296
GTATATA469200.010.3346261
CATGACA859650.010.2228299
CACATGA1083000.010.2110177
TCTATAC205200.010.0600873
TAGGCTG101500.010.0044835
GTATTAG207400.09.864491
TCATACA1236550.09.7314092
GTATAGA226000.09.4896571
GTCGCGC15400.09.4600218
ATCATAC1236900.09.4490011
GTATAGG122100.09.437231
GTGTATG1084000.09.4367861
TATATAC472350.09.2882173