FastQCFastQC Report
Tue 15 Nov 2016
SRR1946157.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946157.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32828174
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC153750.016.96787894
GTCGCGC23750.013.8444418
TATACCG128900.012.8999315
TATACTG153250.012.4747265
CATACAC979650.011.5561843
TAGACTG81300.011.5551745
TCTATAC207000.011.5102883
CTATACT167950.011.4455764
ACATGAC817950.011.3877268
ATACCGT107350.011.3328236
ACACATG958350.011.2829216
TAGGCTG107300.011.2504645
GTATAGA216450.011.2459481
TACCGTG106650.011.0989027
CACATGA921750.011.0735527
TCGCGCG31450.011.0523369
TATACAG143850.010.9062045
GTGTATG919500.010.8656761
CATGACA855250.010.8197249
CCAAAGC254150.010.72806494