Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946120.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35725648 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 11870 | 0.0 | 12.512267 | 5 |
TATACTG | 16755 | 0.0 | 12.510944 | 5 |
CTATACT | 18280 | 0.0 | 12.163319 | 4 |
TCTATAC | 20650 | 0.0 | 11.723518 | 3 |
CATACAC | 108675 | 0.0 | 11.172891 | 3 |
ACATGAC | 86490 | 0.0 | 11.150212 | 8 |
GTATAGG | 12900 | 0.0 | 10.970628 | 1 |
ACACATG | 104885 | 0.0 | 10.906549 | 6 |
CATGACA | 88330 | 0.0 | 10.853929 | 9 |
GAGCGCG | 2185 | 0.0 | 10.754531 | 7 |
CACATGA | 102345 | 0.0 | 10.699469 | 7 |
CTAGTAC | 10510 | 0.0 | 10.689712 | 3 |
GTATAGA | 22510 | 0.0 | 10.33914 | 1 |
TAGGCTG | 11355 | 0.0 | 10.306516 | 5 |
GTATATA | 46210 | 0.0 | 10.245854 | 1 |
TCATACA | 119745 | 0.0 | 10.1990385 | 2 |
CTAGGCT | 9315 | 0.0 | 10.193789 | 4 |
TATACAG | 15940 | 0.0 | 10.113593 | 5 |
GTACTAG | 13005 | 0.0 | 10.014381 | 1 |
TACCGTG | 9425 | 0.0 | 9.923037 | 7 |