FastQCFastQC Report
Tue 15 Nov 2016
SRR1946158.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946158.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32851480
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC146100.015.08522494
TATACTG172000.011.5515725
CTATACT176550.011.42081454
TATACCG100050.011.1734945
GTATAGG121500.010.7729251
CATACAC937850.010.7335783
TCTATAC210200.010.6869463
GTATATA437050.010.6759781
ACACATG893700.010.2909176
GTGTATG887900.010.2130951
ACATGAC719950.010.1778528
GTATAGA225000.010.1699511
TAGAGCG63650.010.0362095
TATACTA288000.09.96501355
CATGACA728650.09.875839
TAGACAG111250.09.8375085
GAGCGCG25450.09.7818567
CACATGA866000.09.7197097
TCATACA1027250.09.5916482
GTATAAT244450.09.5726351