Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946211.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27530270 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 8380 | 0.0 | 14.131551 | 5 |
TATACTG | 13260 | 0.0 | 14.034113 | 5 |
CATACAC | 79885 | 0.0 | 13.256493 | 3 |
TAGGCTG | 7720 | 0.0 | 13.026562 | 5 |
CTATACT | 13830 | 0.0 | 12.847019 | 4 |
GTCGCGC | 1430 | 0.0 | 12.815369 | 8 |
ACATGAC | 69375 | 0.0 | 12.760875 | 8 |
ACACATG | 81375 | 0.0 | 12.605881 | 6 |
GTGTATG | 75805 | 0.0 | 12.394806 | 1 |
CATGACA | 70820 | 0.0 | 12.35451 | 9 |
CACATGA | 78485 | 0.0 | 12.267596 | 7 |
TCTATAC | 15845 | 0.0 | 11.925223 | 3 |
GAGCGCG | 1380 | 0.0 | 11.917718 | 7 |
TCATACA | 89215 | 0.0 | 11.89122 | 2 |
TATACAG | 12890 | 0.0 | 11.884968 | 5 |
GTATAGA | 16615 | 0.0 | 11.842761 | 1 |
GTATATA | 39425 | 0.0 | 11.796746 | 1 |
TAGACAG | 8970 | 0.0 | 11.787546 | 5 |
ATCATAC | 88205 | 0.0 | 11.698342 | 1 |
ACAGTGC | 4785 | 0.0 | 11.489641 | 8 |