FastQCFastQC Report
Tue 15 Nov 2016
SRR1945983.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945983.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45280140
Sequences flagged as poor quality0
Sequence length76
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC73500.018.85843853
CGCCGTA60800.018.19596356
GCCGTAT63250.017.21619257
CGAGATC227100.016.0296218
CCGAGAT242850.015.03121617
TGGTCGC92950.014.53365252
GAGACCG199550.014.01111950
CCGTATC77800.013.72692758
CGAGACC204550.013.70119549
TATGCCG66850.013.41176263
AATGCCG251250.013.06659313
TGCCGAG260500.012.66202415
CTCGGTG151600.012.39216647
ATCAGCC141400.012.3777872
CCGGCAT55600.012.1649861
TCGGTGG157300.012.09928148
ATGCCGA276300.011.95797414
CGTATGC84200.011.77046961
AGACCGA224250.011.68861751
GGCTGAT147500.011.5336472