FastQCFastQC Report
Tue 15 Nov 2016
SRR1946178.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946178.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34718860
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG122350.013.0891515
GTCGCGC18750.012.2733768
ATACCGT109050.012.0586796
TATACTG162700.011.6903785
CTAGTAC129900.011.5724353
TCTATAC218850.011.2907593
TACCGTG103250.011.1895457
TATGAGC154800.011.11464894
CCGTGAG94400.011.0944699
ACCGTGA126850.011.070068
GTATAGA242850.010.9672581
CTATACT169200.010.6893474
CATACAC1011850.010.6595713
ACATGAC804450.010.4910338
ACACATG973200.010.3512446
CACATGA935850.010.1922737
TAGTACT242200.010.1830064
GTATAGG124200.010.0781261
GTACTAC149750.010.0357676
TATACAG149300.010.0344135