FastQCFastQC Report
Tue 15 Nov 2016
SRR1946038.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946038.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62405408
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC24750.015.364928
TATACCG229750.015.3253065
TATACTG329350.014.4538565
CTATACT332300.013.9741954
TCTATAC435350.013.6754483
TACCGTG183350.013.5710917
CTAGTAC239450.013.4318733
CATACAC1493200.013.0462683
ATACCGT214950.012.8863476
GTATAGA442250.012.6964381
TATACAG286850.012.55289655
CCGTGAG172150.012.5177469
ACATGAC1144150.012.4372238
ACACATG1479800.012.3476716
GTATAGG221850.012.093681
CATGACA1156150.012.0644899
CACATGA1442250.011.9140747
GTACTAG283350.011.8733051
ACCGTGA222850.011.7555268
TCGCGCG34750.011.753989