Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946114.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40782058 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 18665 | 0.0 | 12.237786 | 5 |
GTATAGA | 25505 | 0.0 | 11.999867 | 1 |
CATACAC | 118250 | 0.0 | 11.539848 | 3 |
ACACATG | 119265 | 0.0 | 11.270131 | 6 |
ACATGAC | 98635 | 0.0 | 11.254339 | 8 |
CTATACT | 19660 | 0.0 | 11.23743 | 4 |
GTATATA | 51135 | 0.0 | 11.03275 | 1 |
TATACCG | 12520 | 0.0 | 10.999118 | 5 |
CATGACA | 100560 | 0.0 | 10.982709 | 9 |
CACATGA | 115700 | 0.0 | 10.934836 | 7 |
TCTATAC | 23480 | 0.0 | 10.790584 | 3 |
CTAGGCT | 9860 | 0.0 | 10.535811 | 4 |
TCATACA | 129080 | 0.0 | 10.502603 | 2 |
ATCATAC | 122825 | 0.0 | 10.480149 | 1 |
GTATAGG | 14440 | 0.0 | 10.320788 | 1 |
CTAGTAC | 11475 | 0.0 | 10.200016 | 3 |
TATACAG | 17015 | 0.0 | 9.91647 | 5 |
GTGTATG | 113565 | 0.0 | 9.906471 | 1 |
TAGTACT | 19975 | 0.0 | 9.765938 | 4 |
GTATTAG | 22840 | 0.0 | 9.756702 | 1 |