FastQCFastQC Report
Tue 15 Nov 2016
SRR1946041.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946041.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28829978
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGAGCG87550.018.57093494
GAGCGCG19000.015.0247567
TATACTG147750.014.0685795
TATACCG90950.013.9495875
CTATACT148800.013.7805544
GTCGCGC11900.013.76240358
CATACAC678850.013.1241453
GTATATA391100.012.8974861
GCGCGCC22000.012.7608839
GTATAGG105800.012.7492321
TAGGCTG92950.012.5917285
TATACAG122000.012.4331145
TCTATAC189050.012.4317733
GTATAGA193850.012.3461711
GTGTATG643250.012.297791
ACACATG657050.012.1225266
CTAGGCT72800.012.089884
CTAGTAC97700.012.0277723
TGAGCGG85800.011.95961894
GCCGTGC33300.011.8034318