Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946116.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25093234 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 12220 | 0.0 | 12.653638 | 5 |
TATACCG | 8135 | 0.0 | 11.9014635 | 5 |
GTATAGA | 17120 | 0.0 | 11.231539 | 1 |
GAGCGCG | 1785 | 0.0 | 10.531494 | 7 |
CATACAC | 70910 | 0.0 | 10.36142 | 3 |
CTATACT | 13620 | 0.0 | 10.285042 | 4 |
TCTATAC | 15910 | 0.0 | 10.281981 | 3 |
ACACATG | 68600 | 0.0 | 10.153013 | 6 |
GTATAGG | 9285 | 0.0 | 10.076063 | 1 |
TATACAG | 11655 | 0.0 | 9.960369 | 5 |
ACATGAC | 50155 | 0.0 | 9.95123 | 8 |
ATACTGT | 12530 | 0.0 | 9.714479 | 6 |
CACATGA | 65780 | 0.0 | 9.673709 | 7 |
GTATTAT | 18995 | 0.0 | 9.652616 | 1 |
AGCGCGC | 2835 | 0.0 | 9.614826 | 8 |
CATGACA | 52080 | 0.0 | 9.529227 | 9 |
GTATATA | 35900 | 0.0 | 9.481211 | 1 |
TAGTACT | 14825 | 0.0 | 9.449058 | 4 |
GTGTATG | 66965 | 0.0 | 9.428614 | 1 |
ATACCGT | 7280 | 0.0 | 9.425237 | 6 |