FastQCFastQC Report
Tue 15 Nov 2016
SRR1946250.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946250.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21330818
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT109750.015.5462424
TCTATAC131900.014.1828213
TATACTG104750.014.1764595
TATACCG75250.014.0511135
GTCGCGC13400.014.027228
CTAGGCT53750.013.7291774
CATACAC484200.013.4349373
GTATAGA147650.013.1648711
GTGTATG463450.013.1106241
TATACAG94450.012.9859375
ACATGAC375650.012.872078
ACACATG481250.012.840316
GTATATA309800.012.8221561
TACCGTG57850.012.5905517
CATGACA387350.012.4346829
TAATACT169750.012.4325414
CACATGA465300.012.331027
GTATAGG82400.012.166131
TATACTA189250.012.14248855
TAGTACT115950.012.0395154