FastQCFastQC Report
Tue 15 Nov 2016
SRR1946050.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946050.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51391996
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG260250.015.0082995
TATACCG162250.014.2935835
CATACAC1376050.014.0167833
CTATACT267450.013.8336174
GTATAGA335900.013.7239041
TCTATAC312950.013.6376973
ACATGAC1069500.013.4806828
TATACAG246450.013.4485295
ACACATG1386000.013.2202516
CATGACA1100700.012.9663419
CTAGTAC167400.012.9299733
TACCGTG121800.012.9124637
CACATGA1346150.012.799247
GTGTATG1310200.012.6391241
TAGACTG136800.012.56012255
TCATACA1533700.012.4045412
TAGGCTG151800.012.3086445
GTATATA775700.012.2794421
CTAGGCT134500.012.0783044
ATACCGT151100.012.0551236