Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945790.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 48251952 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 8620 | 0.0 | 9.423062 | 48-49 |
TATGCCG | 10235 | 0.0 | 8.569452 | 46-47 |
ATGCCGT | 9470 | 0.0 | 8.489897 | 46-47 |
GCCGTCT | 9175 | 0.0 | 8.377371 | 48-49 |
GAGCACA | 23060 | 0.0 | 7.9080014 | 9 |
GTATGCC | 11515 | 0.0 | 7.488081 | 44-45 |
TCGGAAG | 25760 | 0.0 | 7.445172 | 3 |
CGTATGC | 12375 | 0.0 | 7.321987 | 44-45 |
GCACACG | 12525 | 0.0 | 7.2214866 | 10-11 |
AGAGCAC | 25250 | 0.0 | 7.2022524 | 8 |
GTCACCG | 13285 | 0.0 | 7.1272225 | 28-29 |
CACCGAT | 14470 | 0.0 | 6.678567 | 30-31 |
ACCGATG | 15650 | 0.0 | 6.3107734 | 32-33 |
AGTCACC | 16170 | 0.0 | 6.1394234 | 28-29 |
CACACGT | 15685 | 0.0 | 5.925026 | 12-13 |
CCGATGT | 14870 | 0.0 | 5.846085 | 32-33 |
ACGTCTG | 15855 | 0.0 | 5.756624 | 14-15 |
CGTCTGA | 17435 | 0.0 | 5.686253 | 16-17 |
CGGAAGA | 36835 | 0.0 | 5.61522 | 4 |
GATCGGA | 32420 | 0.0 | 5.5778117 | 1 |