FastQCFastQC Report
Tue 15 Nov 2016
SRR1946097.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946097.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44707266
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG63750.021.42055363
GGTCGCC68150.021.06513863
CGCCGTA69700.020.39661266
CGGCATT83750.020.1499481
GCCGTAT70450.020.08267667
CGTATGC71700.019.15423861
ATGCCGT72750.018.91059164
TGCCGTC73700.018.43194265
TGGTCGC80400.018.03649762
GTATGCC79200.017.42524762
GCCGTCT81550.016.91753466
CCGTATC88600.016.4442168
CGAGATC188150.016.07576218
CGTGTAG97700.014.838635
GAGCGTC99050.014.73155429
GAGACCG104450.014.52859450
AGCGTCG100000.014.418550530
CCGAGAT218750.013.95443517
GAGATCG218650.013.89874819
GCGTCGT105150.013.71468431