Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945956.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19203732 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTGCG | 1205 | 0.0 | 16.381115 | 9 |
TATACTG | 9760 | 0.0 | 16.32689 | 5 |
CTATACT | 10395 | 0.0 | 16.147018 | 4 |
TATACCG | 6110 | 0.0 | 15.15579 | 5 |
TCTATAC | 12115 | 0.0 | 14.670132 | 3 |
CATACAC | 57275 | 0.0 | 14.119814 | 3 |
GTCGCGC | 700 | 0.0 | 14.0996065 | 8 |
GTATAGG | 6875 | 0.0 | 14.034842 | 1 |
GCCGTGC | 2010 | 0.0 | 14.029459 | 8 |
ACATGAC | 42675 | 0.0 | 13.612274 | 8 |
GTGTATG | 54325 | 0.0 | 13.429454 | 1 |
ACACATG | 54970 | 0.0 | 13.381467 | 6 |
CATGACA | 43200 | 0.0 | 13.348794 | 9 |
TATACAG | 9035 | 0.0 | 13.214756 | 5 |
GATTGAG | 50195 | 0.0 | 12.996591 | 7 |
CACATGA | 52780 | 0.0 | 12.77859 | 7 |
TAGTACT | 11830 | 0.0 | 12.638369 | 4 |
TCATACA | 62885 | 0.0 | 12.526821 | 2 |
CTAGTAC | 6175 | 0.0 | 12.411271 | 3 |
ATTGAGT | 55565 | 0.0 | 12.408364 | 8 |