FastQCFastQC Report
Tue 15 Nov 2016
SRR1946082.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946082.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66758004
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC160550.031.17356553
CGCCGTA144750.031.04915656
GCCGTAT157700.028.49538257
TGGTCGC172350.028.16801852
AGCGTCG216450.025.94250720
GAGCGTC216950.025.89806619
CGTGTAG212250.025.75296225
TATGCCG146700.025.48044453
GCGTCGT219600.025.45953621
CCGTATC179450.024.78935858
GTCGTGT231000.024.00751323
CGTATGC165650.023.57525351
GTATGCC174900.022.0901352
GTCGCCG232150.021.9196854
ATGCCGT144400.021.77724654
CTCGGTG246250.021.76616747
CGTCGTG260900.021.61709622
CGAGACC278900.021.59685339
CGTATCA205200.021.4747359
AAGAGCG548000.021.4344317