FastQCFastQC Report
Tue 15 Nov 2016
SRR1946203.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946203.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27835986
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG92900.015.5819635
TATACTG131000.015.42715
CTATACT143000.014.5269154
CATACAC620650.014.0015893
TCTATAC165750.013.695593
CCGTGCG17600.013.3519449
GCCGTGC29950.013.3385718
ACACATG616550.013.3019196
TACCGTG72250.013.2702627
ACATGAC485550.013.2125258
GTGTATG596750.012.99130251
TATACAG119300.012.96112255
CACATGA594650.012.9382167
GTATAGG95250.012.8981391
GTATAGA180550.012.8789661
CATGACA497000.012.7095469
TAGTACT148900.012.6256124
ATACCGT79450.012.2451356
GTATATA393450.012.1669841
TCATACA707400.012.1585052