Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946252.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 29106366 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 14165 | 0.0 | 17.057373 | 5 |
ATACCGT | 11310 | 0.0 | 16.995201 | 6 |
CCGTGAG | 10240 | 0.0 | 15.924508 | 9 |
TACCGTG | 12300 | 0.0 | 15.664372 | 7 |
CTAGTAC | 11985 | 0.0 | 15.061173 | 3 |
TCTATAC | 20850 | 0.0 | 14.609474 | 3 |
ACCGTGA | 13220 | 0.0 | 14.503247 | 8 |
GTATAGA | 22255 | 0.0 | 14.095374 | 1 |
CTATACC | 17340 | 0.0 | 12.253353 | 4 |
GTACTAC | 12735 | 0.0 | 12.215034 | 6 |
TAGTACT | 24950 | 0.0 | 12.114515 | 4 |
CCTAGTA | 13290 | 0.0 | 12.066281 | 2 |
GTACTAG | 15950 | 0.0 | 11.175241 | 1 |
ACATGAC | 72470 | 0.0 | 10.842128 | 8 |
CTATACT | 13635 | 0.0 | 10.825304 | 4 |
CATACAC | 92745 | 0.0 | 10.780591 | 3 |
ACACATG | 92045 | 0.0 | 10.691585 | 6 |
TATACTG | 12760 | 0.0 | 10.683485 | 5 |
AGTACTA | 23705 | 0.0 | 10.628952 | 5 |
CACATGA | 87970 | 0.0 | 10.325986 | 7 |