Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946253.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25560188 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1255 | 0.0 | 18.723984 | 8 |
TATACCG | 8770 | 0.0 | 16.72236 | 5 |
CTATACT | 12985 | 0.0 | 14.699432 | 4 |
TATACTG | 12535 | 0.0 | 14.62456 | 5 |
CATACAC | 58675 | 0.0 | 13.878072 | 3 |
TCTATAC | 15585 | 0.0 | 13.695674 | 3 |
CTAGGCT | 6725 | 0.0 | 13.631976 | 4 |
GTATAGA | 16935 | 0.0 | 13.591077 | 1 |
TACCGTG | 7925 | 0.0 | 13.521438 | 7 |
ATACCGT | 7445 | 0.0 | 13.383808 | 6 |
TCGCGCG | 1765 | 0.0 | 13.313447 | 9 |
GTGTATG | 56200 | 0.0 | 13.006647 | 1 |
ACATGAC | 44560 | 0.0 | 12.909465 | 8 |
ACACATG | 58675 | 0.0 | 12.840708 | 6 |
GAGCGCG | 1225 | 0.0 | 12.660917 | 7 |
TATACAG | 11545 | 0.0 | 12.540051 | 5 |
TAGGCTG | 8135 | 0.0 | 12.538476 | 5 |
GCCGTGC | 2535 | 0.0 | 12.421351 | 8 |
CATGACA | 45325 | 0.0 | 12.390684 | 9 |
CTAGTAC | 8405 | 0.0 | 12.362004 | 3 |