FastQCFastQC Report
Tue 15 Nov 2016
SRR1946216.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946216.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23969298
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC276480.11534755836403719No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG88200.018.1174145
TACCGTG65700.017.3115487
CCGTGAG58800.016.7852549
ATACCGT76850.015.9618256
ACCGTGA77900.015.6863468
CTATACT120350.015.1520564
TCTATAC152350.015.1160943
TATACTG114800.014.902035
CATACAC748050.014.1991953
GTATAGA161500.013.9308821
ACATGAC683900.013.9229988
CTATACC125600.013.6206454
CATGACA700050.013.4339579
ACACATG779750.013.3808446
CACATGA757000.013.1993737
CTAGGCT52200.012.8751254
GTGTATG713650.012.8279611
TCATACA830550.012.7321772
ATCATAC831300.012.3034021
TAGGCTG65000.012.1473595