FastQCFastQC Report
Tue 15 Nov 2016
SRR1946163.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946163.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33835548
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC150750.014.43178594
TATACCG104400.012.6876585
CTATACT174850.012.4719454
TATACTG167600.012.2472985
TCTATAC208350.011.34497453
CATACAC957600.011.3015733
ACATGAC766000.011.0439138
ACACATG932100.010.9151936
GTACTAG122050.010.83875751
CATGACA771150.010.8117899
GTATAGG113500.010.7842121
GCGGGCG31650.010.56379794
CACATGA917450.010.3829567
GTATAGA222700.010.337121
GTATTAG197850.010.2553891
TAGAGCG60350.010.1959315
TCATACA1064150.010.0399852
GAGCGCG20600.010.0327717
GTATATA443750.010.0254631
CCAAAGC224100.010.00231494