FastQCFastQC Report
Tue 15 Nov 2016
SRR1946214.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946214.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18858974
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC210610.11167627676882104No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG65600.017.4094245
GTCGCGC7900.017.2525338
TATACTG87600.014.8613295
CTATACT93350.014.8521614
CATACAC573250.014.4379813
GTGTATG537350.014.4188231
ATACCGT58300.014.349396
TACCGTG53150.014.3249697
ACATGAC508950.014.1193388
ACACATG588500.013.8958396
CACATGA566950.013.6779557
GTATAGA123800.013.6499491
TCTATAC118750.013.6149483
CATGACA525750.013.4714999
GATTGAG519500.013.4345437
GTGCTAG27450.013.0325211
ATTGAGT573450.013.0147828
TTGAGTA564050.012.9983719
TCATACA646500.012.9768732
GTATTAG112900.012.88314151