FastQCFastQC Report
Tue 15 Nov 2016
SRR1946229.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946229.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23930002
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT118200.015.9463154
TATACTG117500.015.5180295
TCTATAC142000.015.4252073
TATACCG72850.014.1917455
CATACAC636650.014.064613
ACATGAC519500.013.6497478
ACACATG633950.013.5131676
GTGTATG589500.013.3797971
TATACAG106350.013.3448035
CATGACA525050.013.2996159
TAATACT186200.013.2277224
CACATGA622750.012.9562487
GTATATA334300.012.6555971
TCATACA710300.012.4739212
ATCATAC675350.012.4036761
GTATTAG139950.012.0720451
GTCTAGG52850.012.0212081
GATTGAG565650.011.9961567
TGTATGA640400.011.9344582
GTATTAT181200.011.7392281