Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946083.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28817292 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 3760 | 0.0 | 16.85843 | 63 |
GGTCGCC | 3780 | 0.0 | 16.213346 | 63 |
CGGCATT | 4575 | 0.0 | 16.148088 | 1 |
CGCCGTA | 3855 | 0.0 | 15.625999 | 66 |
GCCGTAT | 4120 | 0.0 | 14.621973 | 67 |
CGTATGC | 4345 | 0.0 | 14.273027 | 61 |
ATGCCGT | 4500 | 0.0 | 14.080793 | 64 |
TGCCGTC | 4595 | 0.0 | 13.792602 | 65 |
GTATGCC | 4615 | 0.0 | 13.4369335 | 62 |
TGGTCGC | 4420 | 0.0 | 13.316362 | 62 |
GCCGTCT | 4895 | 0.0 | 13.0215435 | 66 |
CCGTATC | 5165 | 0.0 | 12.139217 | 68 |
AGCGTCG | 5110 | 0.0 | 11.985619 | 30 |
GCGTCGT | 5345 | 0.0 | 11.65667 | 31 |
CGAGATC | 11110 | 0.0 | 11.648499 | 18 |
GAGCGTC | 5200 | 0.0 | 11.575057 | 29 |
CGTGTAG | 5210 | 0.0 | 11.559608 | 35 |
CCGAGAT | 12235 | 0.0 | 10.719416 | 17 |
GAGACCG | 6210 | 0.0 | 10.653456 | 50 |
AAGAGCG | 12060 | 0.0 | 10.589286 | 27 |