FastQCFastQC Report
Tue 15 Nov 2016
SRR1946260.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946260.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21089446
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG65950.012.4020545
CTAGTAC75050.012.1509493
TACCGTG51400.011.8852857
GTACTAG95600.011.8070171
CCGTGAG62350.011.6069979
TATACTG105500.011.5400175
TAGGCCG21150.010.8904265
CCTAGTA84700.010.7156242
GTATTAG123000.010.7063091
TAGTACT147250.010.5345944
TCTATAC136500.010.5033143
GACCGTG37750.010.456637
ATACCGT61400.010.4095236
CTATACT112000.010.4086124
TACTAGG106700.010.4013842
ACCGTGA72800.010.2636388
GTATAGA147450.010.2068591
TATACAG101100.010.042965
GTACTAC84350.010.028776
CCTATAC70350.09.9559183