Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945948.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 48387680 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 8825 | 0.0 | 11.7091875 | 48-49 |
GCCGTCT | 9350 | 0.0 | 10.948912 | 48-49 |
TATGCCG | 9745 | 0.0 | 10.729831 | 46-47 |
TCGGAAG | 23585 | 0.0 | 10.711889 | 3 |
GAGCACA | 21975 | 0.0 | 10.384918 | 9 |
ATGCCGT | 10115 | 0.0 | 10.101867 | 46-47 |
GCACACG | 11530 | 0.0 | 9.795103 | 10-11 |
AGAGCAC | 24145 | 0.0 | 9.68242 | 8 |
CGTATGC | 12275 | 0.0 | 8.6724825 | 44-45 |
GTATGCC | 11740 | 0.0 | 8.660157 | 44-45 |
CATCACG | 14585 | 0.0 | 8.461401 | 32-33 |
CACACGT | 14315 | 0.0 | 7.835911 | 12-13 |
GATCGGA | 30855 | 0.0 | 7.80449 | 1 |
CGGAAGA | 34910 | 0.0 | 7.6157656 | 4 |
ATCGGAA | 38185 | 0.0 | 7.1213913 | 2 |
ACGTCTG | 15780 | 0.0 | 7.0715117 | 14-15 |
CGTCTGA | 16370 | 0.0 | 7.0335503 | 16-17 |
GAAGAGC | 37600 | 0.0 | 6.920745 | 6 |
CAGTCAC | 16770 | 0.0 | 6.8568964 | 26-27 |
TCGTATG | 16465 | 0.0 | 6.7711096 | 42-43 |