FastQCFastQC Report
Tue 15 Nov 2016
SRR1946056.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946056.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86502176
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT122500.08.1046131
CGAGATC297350.06.38016818
AATGCCG155700.06.327696313
CGCCGTA82600.06.231570266
GGTCGCC97200.05.88142563
GCCGTAT92750.05.84846567
GAGACCG179000.05.59537450
CGAGACC182600.05.53995549
CCGAGAT385300.05.268261417
GAGATCG360100.05.220053719
GAGCGGT199600.05.111400629