FastQCFastQC Report
Tue 15 Nov 2016
SRR1946126.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946126.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39922008
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGA244550.011.7304641
TATACTG186900.011.6198835
TATACCG127300.011.4103565
CTATACT201850.011.179154
TAGACCG88850.011.163345
ACATGAC1018950.011.1625558
TAGGCTG114200.011.155075
CATACAC1168250.011.0741133
CATGACA1020500.010.9883079
ACACATG1135100.010.9859866
CACATGA1093850.010.7253877
TCTATAC230850.010.7115463
CTAGGCT101850.010.523744
GTGTATG1122850.010.3700751
GTATATA517700.010.1649431
ATCATAC1241850.010.0428591
TCATACA1282350.010.0301882
TAGTACT216500.09.9666934
TATACAG177550.09.95488555
GTACTAG138450.09.8504941