FastQCFastQC Report
Wed 16 Nov 2016
SRR1945965.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945965.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74112894
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG302450.012.8668483
GATCGGA337050.012.1470011
ATCGGAA401050.010.207462
CGGAAGA413900.09.9699654
GAGCACA343800.09.8825829
AGAGCAC340050.09.8534028
GCACACG186850.08.71456610-11
ACGTCTG194300.08.41660514-15
CGTCTGA215900.07.71626816-17
ACTGACC225100.07.401320532-33
GAAGAGC556500.07.35530476
CACGTCT232650.07.26150114-15
ACACGTC238650.07.03960312-13
CCAGTCA237700.06.939584726-27
TCCAGTC239100.06.790546424-25
CACACGT259250.06.59805912-13
ACTCCAG266550.06.48820322-23
CACTGAC260300.06.33745730-31
CTCCAGT274300.06.23608224-25
CAGTCAC273700.06.026815426-27