Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946266.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43831440 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 13470 | 0.0 | 17.72547 | 5 |
GTATAGA | 22520 | 0.0 | 14.538856 | 1 |
TACCGTG | 10240 | 0.0 | 14.317152 | 7 |
ATACCGT | 10420 | 0.0 | 13.844526 | 6 |
AGACCGT | 33335 | 0.0 | 13.791402 | 94 |
TCTATAC | 21115 | 0.0 | 13.757112 | 3 |
CTATACT | 17250 | 0.0 | 13.5152 | 4 |
CATACAC | 103125 | 0.0 | 13.231616 | 3 |
TATACTG | 17265 | 0.0 | 13.039789 | 5 |
ACACATG | 102855 | 0.0 | 12.750932 | 6 |
ACATGAC | 79785 | 0.0 | 12.562371 | 8 |
TATACAG | 15625 | 0.0 | 12.393067 | 5 |
GTATATA | 49755 | 0.0 | 12.376342 | 1 |
CCGTGCA | 19945 | 0.0 | 12.255733 | 94 |
GTACTAG | 12605 | 0.0 | 12.241097 | 1 |
GCTGTCC | 8960 | 0.0 | 12.166957 | 8 |
CACATGA | 99110 | 0.0 | 12.099438 | 7 |
GTGTATG | 100965 | 0.0 | 11.951044 | 1 |
CATGACA | 85100 | 0.0 | 11.793978 | 9 |
CTAGGCT | 10080 | 0.0 | 11.704235 | 4 |