FastQCFastQC Report
Wed 16 Nov 2016
SRR1945955.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945955.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74314446
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG389500.07.0065854
GGTCGCC95000.06.72347844-45
AGAGCGT220050.06.57650579
TGCCGTC115600.06.00281950-51
TATGCCG121250.05.86717148-49
GCCGTCT127800.05.778756652-53
CGCCGTA116600.05.74004746-47
GCACACG142850.05.695056412-13
CGGAAGA525250.05.6836645
GATCGGA504900.05.6569522
ATGCCGT127250.05.56159150-51
TGGTCGC119500.05.414542-43
AAGAGCG279150.05.26568178
ATCGGAA554400.05.1824423
GTATGCC149300.05.01079448-49