FastQCFastQC Report
Tue 15 Nov 2016
SRR1946113.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946113.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37158288
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT182200.012.151894
TATACTG168450.011.8581775
TAGGCTG125850.011.8014095
CTAGGCT104300.011.3576254
TATACCG122250.011.341575
TCTATAC215750.011.2209923
GTCGCGC33950.011.0744948
TATACAG150400.010.6250525
CATACAC952400.010.1578263
CTGTCCC135350.010.1389659
GTATTAG211700.010.0605631
GCTGTCC118450.09.9192468
ACATGAC802650.09.9012748
GTATAGA227050.09.8152591
TAGTACT209850.09.7667224
ACACATG967500.09.7444336
GTGTATG934650.09.633071
CATGACA825500.09.6043299
GTATAGG143100.09.5608891
ACAGTGC73400.09.4763128