FastQCFastQC Report
Tue 15 Nov 2016
SRR1946022.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946022.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86421230
Sequences flagged as poor quality0
Sequence length110
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG893860.10343060379955249Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTCAGC741550.016.7448353
CAGCAGG761200.016.4082186
CGGTTCA786850.016.0493371
CAGGAAT824050.015.3261489
GGTTCAG877950.014.33256152
GCAGGAA880600.014.3248198
GAGACCG415900.013.500566550-51
TCAGCAG939000.013.4890725
CGAGATC539600.013.36955518-19
TATGCCG181250.013.081362-63
CCGAGAT536750.012.97504516-17
CGAGACC428250.012.87390948-49
AGCAGGA995600.012.7380077
TTCAGCA1057100.012.085134
CGTATGC217600.011.89750560-61
GACCGAT390900.011.66548452-53
AATGCCG550850.011.4115612-13
AGACCGA486850.011.15950750-51
CCGGCAT133450.011.0940561
TGCCGAG563850.011.08412814-15