Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946204.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30246914 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 9955 | 0.0 | 14.027421 | 5 |
ATACCGT | 8510 | 0.0 | 13.532105 | 6 |
GTCGCGC | 1175 | 0.0 | 12.80068 | 8 |
TACCGTG | 7930 | 0.0 | 12.684574 | 7 |
TCTATAC | 18095 | 0.0 | 12.056703 | 3 |
CCGTGAG | 6135 | 0.0 | 11.492149 | 9 |
TATACTG | 14310 | 0.0 | 11.072685 | 5 |
CTATACT | 15420 | 0.0 | 11.068805 | 4 |
ACATGAC | 78450 | 0.0 | 10.90434 | 8 |
TCGCGCG | 1395 | 0.0 | 10.782023 | 9 |
CATACAC | 95345 | 0.0 | 10.715957 | 3 |
ACACATG | 97500 | 0.0 | 10.591422 | 6 |
CATGACA | 80975 | 0.0 | 10.471529 | 9 |
GTACTAG | 10995 | 0.0 | 10.358773 | 1 |
CACATGA | 95190 | 0.0 | 10.330127 | 7 |
CTAGTAC | 8850 | 0.0 | 10.306889 | 3 |
CTATACC | 13410 | 0.0 | 10.273475 | 4 |
ACCGTGA | 8660 | 0.0 | 10.258051 | 8 |
TAGGCTG | 7605 | 0.0 | 10.20111 | 5 |
GTATATA | 48005 | 0.0 | 10.166711 | 1 |