FastQCFastQC Report
Tue 15 Nov 2016
SRR1946246.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946246.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30285418
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT153650.010.9580234
GTCGCGC11450.010.6761788
TATACCG94100.010.595875
TATACTG143900.010.4587445
GTGCTAG48550.09.9830421
TCTATAC185000.09.9393343
CATACAC786000.09.8781763
ACATGAC635200.09.6815578
CCGTGCG16550.09.6591839
ACTGTGC41950.09.638618
ACACATG785050.09.4748486
GTATAGA197350.09.4421941
GTATAGG104450.09.4157031
CATGACA649200.09.3716329
GTATTAG176050.09.328341
GTGTATG782000.09.2427111
TAGGCTG89250.09.2218955
TACCGTG69300.09.15955457
TAGTACT157350.09.0863314
CACATGA760050.09.0443857