FastQCFastQC Report
Tue 15 Nov 2016
SRR1946259.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946259.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30244452
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG102550.015.1713215
AGACCGG148200.014.59095894
TACCGTG83550.013.6108227
ATACCGT88400.013.5022536
GTATAGA186950.013.3627571
TCTATAC170900.013.2302223
CTAGTAC120000.013.1620073
GTACTAG156050.012.632151
CCGTGAG103500.012.439419
CTATACT135100.012.2476124
TATACTG135250.012.1635925
ACATGAC730600.011.905358
CATACAC867900.011.861473
GTGTATG849700.011.83221151
TATACAG125400.011.8071235
ACACATG866800.011.4661136
GTATAGG97900.011.4372421
CCTAGTA128000.011.2463762
CATGACA772250.011.1469779
CACATGA854250.011.1447387