FastQCFastQC Report
Tue 15 Nov 2016
SRR1945967.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945967.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45119016
Sequences flagged as poor quality0
Sequence length76
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCAGCC150550.010.6459982
GGCTGAT145000.09.6054282
GCCGTAT110600.09.5944657
CGAGATC195750.09.42242218
GGTCGCC143800.09.32388253
CGCCGTA112750.09.13061656
CGTGTAG213700.08.74776425
GTCGTGT232450.08.32970623
GAGCGTC241450.08.23496219
CCGTATC124400.08.19276958
AGCGTCG248200.08.08218120
GTAGATC234650.08.05121741
TCGTGTA239700.07.989376524
GCGTCGT247600.07.94696721
TCAGCCA213800.07.87261963
GAGTGTA235500.07.81483537
CAGCCAA268200.07.7369214
TGGTCGC168800.07.693383752
CCAAGAT262150.07.55176457
TAGATCT255400.07.46516442