FastQCFastQC Report
Tue 15 Nov 2016
SRR1946086.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946086.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61264762
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT88650.08.8894241
GGTCGCC66350.07.64193463
TATGCCG69200.07.175603463
GAGCGTC92200.06.67748129
CGTATGC78850.06.611747761
CGAGATC199800.06.475889718
GCGTCGT100200.06.45848531
AGCGTCG94850.06.453881730
CCGAGAT243800.06.05293917
AAGAGCG222800.05.84015827
ATGCCGT80400.05.828062564
TCGGAAG229850.05.812844823
AATGCCG114000.05.766078513
TGCCGTC82850.05.7405465
GAGATCG230950.05.71993919
GCTGAAC152000.05.68138111
GAGACCG119350.05.592612750
GTCGTGT121100.05.57548233
CGCCGTA64800.05.55868666
GTATGCC90700.05.55569162