Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946218.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19595166 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 8355 | 0.0 | 19.06812 | 5 |
TACCGTG | 6415 | 0.0 | 17.873795 | 7 |
ATACCGT | 7760 | 0.0 | 17.743189 | 6 |
TCTATAC | 14020 | 0.0 | 17.400093 | 3 |
CCGTGAG | 5960 | 0.0 | 16.95167 | 9 |
ACCGTGA | 7450 | 0.0 | 15.895187 | 8 |
CTAGTAC | 7665 | 0.0 | 15.698567 | 3 |
CTATACT | 10415 | 0.0 | 15.524992 | 4 |
TATACTG | 9680 | 0.0 | 15.147252 | 5 |
GTATAGA | 14980 | 0.0 | 14.894941 | 1 |
CTATACC | 11605 | 0.0 | 14.4190645 | 4 |
TAGTACT | 14830 | 0.0 | 14.167676 | 4 |
CATACAC | 49465 | 0.0 | 14.139601 | 3 |
ACATGAC | 42925 | 0.0 | 14.012675 | 8 |
ACACATG | 52610 | 0.0 | 13.541186 | 6 |
CATGACA | 44415 | 0.0 | 13.500234 | 9 |
GTACTAC | 8815 | 0.0 | 13.327341 | 6 |
CACATGA | 50840 | 0.0 | 13.282348 | 7 |
GTGTATG | 47085 | 0.0 | 13.026691 | 1 |
CCTAGTA | 8905 | 0.0 | 12.668044 | 2 |