Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946040.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37527780 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10445 | 0.0 | 14.669254 | 5 |
TATACTG | 15455 | 0.0 | 13.411226 | 5 |
TAGACCG | 9155 | 0.0 | 13.0399 | 5 |
CCGTGAG | 9480 | 0.0 | 12.888209 | 9 |
GACCGTG | 6870 | 0.0 | 12.581713 | 7 |
ATACCGT | 9565 | 0.0 | 12.08372 | 6 |
TACCGTG | 7435 | 0.0 | 11.941518 | 7 |
TCTATAC | 20795 | 0.0 | 11.80472 | 3 |
CTAGTAC | 11150 | 0.0 | 11.682857 | 3 |
AGACCGT | 8865 | 0.0 | 11.500891 | 6 |
ACCGTGA | 12450 | 0.0 | 11.244138 | 8 |
TAGTACT | 21250 | 0.0 | 11.220218 | 4 |
CTATACT | 17210 | 0.0 | 10.657024 | 4 |
CTATACC | 15175 | 0.0 | 10.629618 | 4 |
GTGTATG | 80275 | 0.0 | 10.611451 | 1 |
GTACTAG | 13460 | 0.0 | 10.419521 | 1 |
ATACTGT | 16440 | 0.0 | 10.317059 | 6 |
GTATAGA | 21800 | 0.0 | 10.297657 | 1 |
TAGGCTG | 8765 | 0.0 | 10.241895 | 5 |
CATACAC | 82885 | 0.0 | 10.201355 | 3 |