FastQCFastQC Report
Tue 15 Nov 2016
SRR1945985.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945985.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71852078
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT105750.08.75746251
GCCGTAT93800.07.86493167
CGCCGTA89750.07.83109366
GGTCGCC89950.07.72206263
TATGCCG78550.07.05635163
CGTATGC95000.06.442684761
TGGTCGC115500.06.4211362
CGAGATC265350.06.301183718
AATGCCG162550.06.07656613
CCGTATC125300.05.994515468
CCGAGAT330750.05.445453617
GCCGTCT114250.05.352046566
ATGCCGT109100.05.235073664
GTATGCC109200.05.214388462
TGCCGTC115000.05.206304665
GAGACCG175550.05.044236750