FastQCFastQC Report
Tue 15 Nov 2016
SRR1946055.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946055.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40618256
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG147350.014.3204755
CTATACT226650.013.8924964
TATACTG214050.013.6783595
TAGACTG90550.013.0270615
TCTATAC280100.012.583733
GTATAGA300250.011.7488861
TACCGTG109600.011.6632497
GTATAGG158650.011.5029731
ATACCGT167600.011.4966446
TATACAG258550.011.4877175
CCGTGAG87000.011.3982259
GCCGTGC39650.011.260188
CCGTGCG32650.011.2275629
CATACAC760550.011.22145753
GTATTAG310300.011.1106811
ACATGAC628300.010.9506268
ACTGTGC66650.010.9294048
ACACATG761950.010.8986146
TAATACT413700.010.8941744
CTAGTAC134950.010.7608553