FastQCFastQC Report
Tue 15 Nov 2016
SRR1946106.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946106.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49973392
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG173100.012.8155835
CCGTGAG128000.011.565579
TATACTG235550.011.3732655
TCTATAC302050.011.3298183
GTCGCGC29050.011.3245858
CTATACT250550.011.2007754
GACCGTG88850.011.1608487
ACATGAC1211950.010.93928058
GTATAGA314750.010.9191851
CATACAC1460650.010.6653883
ACACATG1459700.010.6539366
TAGGCTG156200.010.4710855
CATGACA1243500.010.4273139
CACATGA1416800.010.3660567
ACCGTGA188350.010.3301138
TAGACCG135700.010.0787485
AGACCGT128550.09.9808496
CTAGGCT141600.09.959244
GTGTATG1393900.09.8017271
TAGTACT310900.09.7825424