FastQCFastQC Report
Tue 15 Nov 2016
SRR1946120.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946120.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35725648
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG118700.012.5122675
TATACTG167550.012.5109445
CTATACT182800.012.1633194
TCTATAC206500.011.7235183
CATACAC1086750.011.1728913
ACATGAC864900.011.1502128
GTATAGG129000.010.9706281
ACACATG1048850.010.9065496
CATGACA883300.010.8539299
GAGCGCG21850.010.7545317
CACATGA1023450.010.6994697
CTAGTAC105100.010.6897123
GTATAGA225100.010.339141
TAGGCTG113550.010.3065165
GTATATA462100.010.2458541
TCATACA1197450.010.19903852
CTAGGCT93150.010.1937894
TATACAG159400.010.1135935
GTACTAG130050.010.0143811
TACCGTG94250.09.9230377