Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945864.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 64776060 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 70335 | 0.0 | 7.774664 | 94-95 |
GGTCGCC | 84165 | 0.0 | 7.7666526 | 94-95 |
ATGCCGT | 65360 | 0.0 | 7.621713 | 94-95 |
CGCCGTA | 62370 | 0.0 | 7.617817 | 94-95 |
CGTATGC | 85715 | 0.0 | 7.590195 | 94-95 |
TGCCGTC | 59160 | 0.0 | 7.5615687 | 94-95 |
GTATGCC | 78910 | 0.0 | 7.5316124 | 94-95 |
GCCGTCT | 55005 | 0.0 | 7.4809294 | 94-95 |
GCCGTAT | 59910 | 0.0 | 7.4272738 | 94-95 |
CCGTATC | 56215 | 0.0 | 7.277668 | 94-95 |
GTCGCCG | 85225 | 0.0 | 7.1211967 | 94-95 |
TGGTCGC | 90890 | 0.0 | 7.001287 | 94-95 |
TCGCCGT | 76935 | 0.0 | 6.873144 | 94-95 |
TCGTATG | 100110 | 0.0 | 6.754943 | 94-95 |
CGTATCA | 56120 | 0.0 | 6.7230353 | 94-95 |
CCGTCTT | 62820 | 0.0 | 6.3688517 | 94-95 |
CTCGTAT | 104720 | 0.0 | 6.187754 | 94-95 |
GTGGTCG | 106800 | 0.0 | 6.1301336 | 92-93 |
GGTGGTC | 112250 | 0.0 | 5.7626896 | 92-93 |
TCTCGTA | 117685 | 0.0 | 5.645872 | 92-93 |