FastQCFastQC Report
Tue 15 Nov 2016
SRR1946245.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946245.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26529484
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG95000.015.88065
TCTATAC167100.015.4130863
ATACCGT86150.015.0570286
TACCGTG70050.014.5591857
CCGTGAG62400.014.310499
CTATACT128850.014.1524874
TATACTG123050.013.9792855
ACTGTGC38200.013.4106148
CATACAC587750.013.1460313
CTATACC133000.012.9688044
ACCGTGA84300.012.9343888
GTATAGA178650.012.9107131
GTGTATG560150.012.3109191
GTATAGG89800.012.2658231
GTACTAG94050.012.262091
TAGGACT91400.012.1353224
TATACAG120300.012.1110435
ACACATG573750.012.0660616
ACATGAC436300.011.8385348
GTATATA387450.011.8088541