Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946239.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31109514 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 11190 | 0.0 | 16.048304 | 5 |
CTATACT | 16495 | 0.0 | 15.959951 | 4 |
TATACTG | 15285 | 0.0 | 15.008947 | 5 |
TCTATAC | 19975 | 0.0 | 14.591457 | 3 |
CATACAC | 91905 | 0.0 | 14.378563 | 3 |
ACATGAC | 68370 | 0.0 | 14.279868 | 8 |
ACACATG | 88865 | 0.0 | 13.997104 | 6 |
CTAGTAC | 11260 | 0.0 | 13.944464 | 3 |
CATGACA | 69835 | 0.0 | 13.79086 | 9 |
CTGAGCG | 7060 | 0.0 | 13.599962 | 94 |
CCGTGAG | 8160 | 0.0 | 13.593909 | 9 |
GTGTATG | 85640 | 0.0 | 13.507422 | 1 |
TATACAG | 14070 | 0.0 | 13.4984255 | 5 |
GTATAGA | 22215 | 0.0 | 13.3832445 | 1 |
CACATGA | 84460 | 0.0 | 13.380003 | 7 |
GTCGCGC | 1315 | 0.0 | 13.226022 | 8 |
TCATACA | 100170 | 0.0 | 12.846454 | 2 |
TACCGTG | 8010 | 0.0 | 12.735032 | 7 |
TAGTACT | 22150 | 0.0 | 12.628131 | 4 |
ACCGTGA | 10730 | 0.0 | 12.529091 | 8 |