Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946046.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35563672 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTGAGCG | 17450 | 0.0 | 22.291277 | 94 |
TGAGCGG | 15310 | 0.0 | 19.927742 | 94 |
AGACCGG | 9390 | 0.0 | 16.769728 | 94 |
CTAGTAC | 13075 | 0.0 | 15.146811 | 3 |
TATACCG | 12455 | 0.0 | 15.073496 | 5 |
TGATGGC | 22980 | 0.0 | 14.39816 | 94 |
GTATAGA | 26665 | 0.0 | 13.613629 | 1 |
ATACCGT | 11800 | 0.0 | 13.564339 | 6 |
TACCGTG | 9870 | 0.0 | 13.419094 | 7 |
TCTATAC | 23460 | 0.0 | 13.371168 | 3 |
TCTGAGC | 30200 | 0.0 | 13.299221 | 94 |
TATACTG | 17640 | 0.0 | 12.951934 | 5 |
GCGTGTA | 6945 | 0.0 | 12.777088 | 92-93 |
AGGCGTG | 7175 | 0.0 | 12.618284 | 90-91 |
TGGCGCG | 7065 | 0.0 | 12.549349 | 78-79 |
CTGATGG | 33755 | 0.0 | 12.53724 | 94 |
CTATACT | 17955 | 0.0 | 12.411804 | 4 |
ACCGTGA | 11855 | 0.0 | 12.354641 | 8 |
CCGTGAG | 9050 | 0.0 | 12.305292 | 9 |
CCTAGTA | 14495 | 0.0 | 12.275761 | 2 |