Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946177.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43559496 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 22090 | 0.0 | 11.905773 | 5 |
TATACCG | 13380 | 0.0 | 11.863857 | 5 |
GGACCGT | 4490 | 0.0 | 11.401301 | 6 |
CTATACT | 23115 | 0.0 | 11.279523 | 4 |
TCTATAC | 27750 | 0.0 | 11.2575865 | 3 |
CCGTGCG | 2575 | 0.0 | 11.125804 | 9 |
GTATAGG | 15470 | 0.0 | 11.072715 | 1 |
GCCGTGC | 5005 | 0.0 | 10.791245 | 8 |
GTATAGA | 29205 | 0.0 | 10.538131 | 1 |
CATACAC | 110020 | 0.0 | 10.230617 | 3 |
TATACAG | 18760 | 0.0 | 10.18889 | 5 |
TATGAGC | 18295 | 0.0 | 10.048954 | 94 |
GTATATA | 57455 | 0.0 | 10.008902 | 1 |
ACACATG | 107445 | 0.0 | 9.922336 | 6 |
ACATGAC | 81175 | 0.0 | 9.8935375 | 8 |
TAGACCG | 9925 | 0.0 | 9.700377 | 5 |
CATGACA | 81515 | 0.0 | 9.673685 | 9 |
CACATGA | 106340 | 0.0 | 9.508733 | 7 |
GTATTAG | 25905 | 0.0 | 9.50082 | 1 |
GTGTATG | 104760 | 0.0 | 9.464813 | 1 |