Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945988.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33223974 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 15160 | 0.0 | 9.003157 | 94-95 |
ATGCCGT | 17410 | 0.0 | 8.741045 | 94-95 |
GCCGTCT | 14435 | 0.0 | 8.664651 | 94-95 |
CGTATGC | 25125 | 0.0 | 8.195848 | 94-95 |
GGTCGCC | 16005 | 0.0 | 8.126692 | 94-95 |
TATGCCG | 19635 | 0.0 | 7.9927306 | 94-95 |
TCGTATG | 29790 | 0.0 | 7.3514204 | 94-95 |
GTCGCCG | 16490 | 0.0 | 7.2531967 | 94-95 |
GTATGCC | 22845 | 0.0 | 7.244364 | 94-95 |
TGGTCGC | 15560 | 0.0 | 6.905708 | 92-93 |
CGCCGTA | 11400 | 0.0 | 6.8206387 | 94-95 |
CTCGTAT | 33000 | 0.0 | 6.485011 | 94-95 |
GTGGTCG | 19025 | 0.0 | 6.2352695 | 92-93 |
TCGCCGT | 14665 | 0.0 | 5.885816 | 94-95 |
CTCGGTG | 27395 | 0.0 | 5.8415203 | 94-95 |
GCCGTAT | 13735 | 0.0 | 5.782291 | 94-95 |
GGCATCT | 44785 | 0.0 | 5.702349 | 94-95 |
AGGCATC | 48210 | 0.0 | 5.6227636 | 94-95 |
TCTCGTA | 38785 | 0.0 | 5.60224 | 92-93 |
CCGTCTT | 19735 | 0.0 | 5.542464 | 94-95 |