FastQCFastQC Report
Tue 15 Nov 2016
SRR1946164.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946164.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32743586
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC158950.016.94431594
TATACCG116600.014.4215885
TATACTG159400.012.9950775
TCTATAC198450.012.7160583
TAGGCTG113600.012.6937115
CTAGGCT101600.012.6746144
GCTGTCC98400.012.4111168
CTATACT166950.012.33007054
TACCGTG96400.012.0838477
ATACCGT100400.012.0234756
CTGTCCC116800.011.7428259
GTATAGA205650.011.7203671
CCGTGAG74850.011.6094739
TATACAG147400.011.5674535
GTACTAG129850.011.5650821
GTATATA468400.011.2765421
CATACAC993200.011.0573573
TAGTACT198800.011.0402374
ACCGTGA104500.011.012418
ACATGAC735750.011.0062558