FastQCFastQC Report
Tue 15 Nov 2016
SRR1946220.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946220.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24938832
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG86850.019.0462175
TACCGTG70150.016.8133757
CCGTGAG60600.016.1285159
ACCGTGA78950.015.6533528
TCTATAC155250.015.6230373
ATACCGT83500.015.3074436
TATACTG119050.015.1973285
CTATACT128450.014.857284
CATACAC745850.014.2746043
ACATGAC637600.014.2310738
CTATACC125050.014.0959694
GTATAGA169850.013.8314731
CATGACA647500.013.7232039
ACACATG771450.013.6811386
CACATGA730900.013.166827
GTGTATG707500.013.0359121
TCATACA836450.012.6385372
ATCATAC819550.012.5001971
TATACAG102450.012.3847645
TAATACT194050.012.3538944