FastQCFastQC Report
Tue 15 Nov 2016
SRR1946111.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946111.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41981630
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG204000.012.7889045
TATACCG141950.012.0541485
CTATACT222900.011.8940774
TCTATAC255650.011.823333
TATGAGC180900.011.79259994
TAGGCTG131950.011.5070395
GTATAGG147000.011.1986051
GCCGTGC51250.011.1857598
GTCGCGC19200.011.013138
GTATAGA272850.010.9979031
CATACAC1041300.010.8390433
ACACATG1055800.010.5215386
ACATGAC886350.010.5021618
CTAGGCT106700.010.3970294
TATACAG178500.010.3759655
CTGTCCC133250.010.2618659
GTATATA531150.010.2454111
CATGACA903650.010.1763289
CACATGA1026900.010.149777
TAGTACT205400.09.9552124