FastQCFastQC Report
Tue 15 Nov 2016
SRR1946261.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946261.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19193806
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG99800.014.738245
TATACCG64000.014.6852665
CTAGTAC67350.014.5862453
TACCGTG48250.013.732097
GTATAGA131150.013.7085141
CATACAC402550.013.6966063
GTCGCGC5904.7293724E-1113.5397858
GTACTAG84450.013.4868661
CTATACT105550.013.3597344
ACACATG398800.012.9615146
ACATGAC336900.012.9438018
GTGTATG386700.012.9376211
GTATAGG69550.012.857361
CATGACA338800.012.8156329
TCTATAC130400.012.7963343
GCCGTGC19600.012.4670058
CACATGA392500.012.3433727
TATACAG84800.012.3023745
ATAGGAC63050.012.3008083
GTATTAG121750.012.1769061