Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946024.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 79046774 |
Sequences flagged as poor quality | 0 |
Sequence length | 99 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 39300 | 0.0 | 13.796143 | 5 |
TATACCG | 23195 | 0.0 | 13.39164 | 5 |
CATACAC | 250190 | 0.0 | 13.303731 | 3 |
ACATGAC | 202370 | 0.0 | 13.248911 | 8 |
ACACATG | 236055 | 0.0 | 13.048446 | 6 |
CTATACT | 40555 | 0.0 | 12.750055 | 4 |
CATGACA | 210455 | 0.0 | 12.563148 | 9 |
CCGTGCG | 4785 | 0.0 | 12.535989 | 9 |
CACATGA | 233675 | 0.0 | 12.472927 | 7 |
TCTATAC | 47185 | 0.0 | 12.042563 | 3 |
TCATACA | 272680 | 0.0 | 11.919728 | 2 |
TATACAG | 38185 | 0.0 | 11.812195 | 5 |
CTAGTAC | 22440 | 0.0 | 11.811462 | 3 |
GTGTATG | 231135 | 0.0 | 11.758777 | 1 |
ATCATAC | 257615 | 0.0 | 11.7546425 | 1 |
GTATAGG | 27195 | 0.0 | 11.70128 | 1 |
GTCGCGC | 3265 | 0.0 | 11.678373 | 8 |
GTATATA | 116290 | 0.0 | 11.517695 | 1 |
GTATAGA | 52335 | 0.0 | 11.316248 | 1 |
GATTGAG | 213175 | 0.0 | 11.094091 | 7 |