FastQCFastQC Report
Tue 15 Nov 2016
SRR1946057.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946057.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74095926
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG121150.026.36136663
CGGCATT152550.026.2502691
GGTCGCC111450.024.37310263
CGTATGC133150.024.11990461
TGCCGTC135600.022.62534365
ATGCCGT138300.022.25655764
GTATGCC146250.022.02987762
CGCCGTA111300.021.2890966
GCCGTCT143200.021.08161566
CCGAGAT349750.020.42449617
GCCGTAT116000.020.30851767
CCTGCTG219300.018.6880368
CGAGATC383950.018.59227818
GGCATTC225700.018.185472
TGGTCGC137050.018.0540862
GCTGAAC236000.017.20390911
GAGACCG209300.017.16428250
CGAGACC214300.016.97811949
TCGTATG201200.016.48550260
GCATTCC260950.015.9435213