FastQCFastQC Report
Tue 15 Nov 2016
SRR1946176.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946176.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34122932
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC180700.012.44463594
ACATGAC852800.012.0714228
TATACTG167400.012.0634555
TATACCG116900.011.8513055
CATGACA877050.011.7109659
CATACAC1067850.011.6756063
ACACATG1054250.011.5109746
CACATGA1028900.011.3153617
GTATAGA233500.011.3059831
CTATACT177450.011.2778794
TAGGCTG107600.011.0861345
GTATTAG192800.011.0810561
TCTATAC219100.011.0635913
GTCGCGC19300.010.9501558
GAGCGCG25200.010.6228097
GTATATA476650.010.5735841
TCATACA1168950.010.5412722
ATCATAC1169700.010.3795261
TAGTACT205950.010.3787124
TATACAG151450.010.3570455