FastQCFastQC Report
Tue 15 Nov 2016
SRR1946151.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946151.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30779844
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG153600.012.5146545
CTATACT161150.011.3158944
CATACAC897150.011.2946083
TATACCG99150.011.1868055
TATACAG152350.011.0131745
ACATGAC652000.010.9567228
GTATTAG170900.010.8410231
ACACATG873550.010.7926796
GTATATA456700.010.7803231
GTATAGA213250.010.5844511
GTATAGG112200.010.5195461
TCTATAC193900.010.4953653
CATGACA668150.010.4879129
CACATGA841100.010.4379187
TCATACA970850.010.2629422
TAATACT251400.010.1513094
ACTGTGC52000.010.0323888
GTGTATG842550.09.9622781
TAGGCTG84550.09.89448455
ATCATAC966700.09.8892141