Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946079.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 79764720 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 11565 | 0.0 | 7.973722 | 1 |
GAGACCG | 16390 | 0.0 | 7.575174 | 50 |
AATGCCG | 16790 | 0.0 | 7.463123 | 44 |
CGAGATC | 27220 | 0.0 | 7.354629 | 18 |
TATGCCG | 7790 | 0.0 | 7.3062162 | 63 |
GAGCGGT | 17760 | 0.0 | 7.134038 | 29 |
CGAGACC | 17570 | 0.0 | 7.0626645 | 49 |
AGAGCGG | 20755 | 0.0 | 6.911317 | 28 |
GAGATCG | 31805 | 0.0 | 6.3669934 | 19 |
TGCCGAG | 20995 | 0.0 | 6.2899666 | 15 |
GCGGTTC | 20725 | 0.0 | 6.1640277 | 31 |
ATGCCGT | 9960 | 0.0 | 6.131858 | 64 |
CCGAGAT | 35800 | 0.0 | 6.0602803 | 17 |
TCGGAAG | 34245 | 0.0 | 5.982203 | 23 |
AAGAGCG | 33225 | 0.0 | 5.829888 | 27 |
CGTATGC | 9490 | 0.0 | 5.761932 | 61 |
GGTCGCC | 8750 | 0.0 | 5.701581 | 63 |
AGCGGTT | 22775 | 0.0 | 5.6551 | 30 |
TGCCGTC | 10320 | 0.0 | 5.5409503 | 65 |
ATGCCGA | 24250 | 0.0 | 5.520101 | 45 |