FastQCFastQC Report
Tue 15 Nov 2016
SRR1946221.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946221.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26987382
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG101400.018.3060685
CCGTGAG66900.015.6632719
ATACCGT90000.015.4028166
TACCGTG78950.015.296417
TCTATAC167750.014.6265013
TATACTG128300.014.5045565
ACCGTGA91400.014.2923598
CTATACT132850.013.7632354
GTATAGA178900.013.708621
CATACAC693900.013.479963
ACATGAC594700.013.3929768
CATGACA611000.012.9125859
ACACATG729500.012.7222056
TAGGCTG82750.012.7208445
CTATACC141600.012.6803884
GTGTATG669650.012.6318381
CACATGA702100.012.5557427
CCGTGCG20700.012.2582129
TAGTACT156000.011.99198154
CTAGTAC85300.011.8473693