Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945965.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 74112894 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 30245 | 0.0 | 12.866848 | 3 |
GATCGGA | 33705 | 0.0 | 12.147001 | 1 |
ATCGGAA | 40105 | 0.0 | 10.20746 | 2 |
CGGAAGA | 41390 | 0.0 | 9.969965 | 4 |
GAGCACA | 34380 | 0.0 | 9.882582 | 9 |
AGAGCAC | 34005 | 0.0 | 9.853402 | 8 |
GCACACG | 18685 | 0.0 | 8.714566 | 10-11 |
ACGTCTG | 19430 | 0.0 | 8.416605 | 14-15 |
CGTCTGA | 21590 | 0.0 | 7.716268 | 16-17 |
ACTGACC | 22510 | 0.0 | 7.4013205 | 32-33 |
GAAGAGC | 55650 | 0.0 | 7.3553047 | 6 |
CACGTCT | 23265 | 0.0 | 7.261501 | 14-15 |
ACACGTC | 23865 | 0.0 | 7.039603 | 12-13 |
CCAGTCA | 23770 | 0.0 | 6.9395847 | 26-27 |
TCCAGTC | 23910 | 0.0 | 6.7905464 | 24-25 |
CACACGT | 25925 | 0.0 | 6.598059 | 12-13 |
ACTCCAG | 26655 | 0.0 | 6.488203 | 22-23 |
CACTGAC | 26030 | 0.0 | 6.337457 | 30-31 |
CTCCAGT | 27430 | 0.0 | 6.236082 | 24-25 |
CAGTCAC | 27370 | 0.0 | 6.0268154 | 26-27 |