FastQCFastQC Report
Tue 15 Nov 2016
SRR1945987.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945987.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44179002
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2808620.6357364070831659No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC1917190.4339595539075329No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT89650.026.81631
TATGCCG71350.025.89655963
CGTATGC83850.023.24787561
ATGCCGT78100.022.58252564
GCCGTAT64400.022.38152967
CGCCGTA62150.022.05864566
GGTCGCC65500.021.7860563
CGAGATC220100.020.937418
GTATGCC91500.020.6142662
TGCCGTC82000.020.56639165
GCCGTCT84350.019.70318666
CCGAGAT256900.018.2246817
TCGTATG127000.016.9233460
CCGTATC79000.016.38307468
AACCGAG135050.015.91231215
GCTGAAC131800.015.72300111
CCTGCTG137050.015.4518638
TGAACCG145150.014.97414113
GGCATTC160800.014.7612942
ATTCCTG152850.014.7466675