FastQCFastQC Report
Tue 15 Nov 2016
SRR1946170.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946170.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38021528
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG129550.013.4473255
TATACTG181650.012.775
TATGAGC163700.012.66731594
CTATACT188050.012.5940584
TAGGCTG126000.012.2982345
TCTATAC224100.011.9083783
TACCGTG109550.011.6159917
GCTGTCC113050.011.4641058
CTAGGCT110350.011.3696584
CCGTGAG87350.011.1815519
ATACCGT109500.011.0209776
CTGTCCC128300.011.0164469
GTATAGA241650.010.8884631
TAGTACT201700.010.8098734
GTATAGG133050.010.7193721
ACATGAC868050.010.6891688
CATACAC1063100.010.6509663
CTAGTAC115700.010.51753
ACACATG1089850.010.4353866
GTATATA504800.010.3221431