FastQCFastQC Report
Tue 15 Nov 2016
SRR1946060.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946060.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58908628
Sequences flagged as poor quality0
Sequence length100
%GC36

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG439000.017.7195053
AGAGCAC352500.017.3578038
GAGCACA352900.017.2848639
TGCCGTC104400.016.54500248-49
TATGCCG113950.016.04492646-47
GATCGGA501650.015.5388161
CGGAAGA514000.015.3351514
ATGCCGT117600.015.04735246-47
ATCGGAA520950.015.0443372
GCCGTCT115700.014.82755448-49
CGTATGC129950.014.50312244-45
GTATGCC132800.014.103394544-45
GTCACCG209800.013.97864828-29
CCGATGT208750.013.54263832-33
CACCGAT222050.013.33448230-31
GAAGAGC596800.013.0085176
ACCGATG227000.012.99217932-33
ACGTCTG233550.012.79732414-15
GCACACG239200.012.53437810-11
CGATGTA229700.012.23595334-35