FastQCFastQC Report
Wed 16 Nov 2016
SRR1945962.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945962.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74877464
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG392400.07.41711244
AGAGCGT217900.06.96368079
GGTCGCC97200.06.63163544-45
TATGCCG112350.05.939760748-49
GATCGGA514150.05.91304162
CGGAAGA534700.05.77104335
GAGCGTC135350.05.74260510-11
GCACACG138800.05.59991412-13
TGCCGTC113100.05.576995450-51
AAGAGCG285550.05.4926188
CGCCGTA113800.05.486496446-47
ATCGGAA583450.05.45819233
ATGCCGT125800.05.274926750-51
GCCGTCT122450.05.25430852-53
AGCGTCG149250.05.11450910-11
GCGTCGT157700.05.061191612-13