FastQCFastQC Report
Wed 16 Nov 2016
SRR1945913.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945913.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95261380
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG900850.025.0958984
AGAGCGT484600.023.1792349
GATCGGA1044300.021.8815962
CGGAAGA1042750.021.8635165
ATCGGAA1095150.020.8781493
AAGAGCG562600.020.198788
GGTCGCC287250.018.42328544-45
GAAGAGC1255500.018.332927
AGAGCAC630850.018.2564569
CGCCGTA300250.017.23120146-47
TATGCCG282200.016.66137946-47
TGCCGTC278500.016.31921848-49
TGGTCGC326700.016.01315142-43
ATGCCGT298250.015.68768748-49
GCCGTCT298700.015.53290350-51
GCACACG377650.015.41439112-13
CGTATGC324700.015.0274544-45
GAGCGTC379350.014.98942210-11
GCCGTAT355050.014.93860848-49
AGATCGG1568150.014.8779041