FastQCFastQC Report
Tue 15 Nov 2016
SRR1946239.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946239.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31109514
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG111900.016.0483045
CTATACT164950.015.9599514
TATACTG152850.015.0089475
TCTATAC199750.014.5914573
CATACAC919050.014.3785633
ACATGAC683700.014.2798688
ACACATG888650.013.9971046
CTAGTAC112600.013.9444643
CATGACA698350.013.790869
CTGAGCG70600.013.59996294
CCGTGAG81600.013.5939099
GTGTATG856400.013.5074221
TATACAG140700.013.49842555
GTATAGA222150.013.38324451
CACATGA844600.013.3800037
GTCGCGC13150.013.2260228
TCATACA1001700.012.8464542
TACCGTG80100.012.7350327
TAGTACT221500.012.6281314
ACCGTGA107300.012.5290918