Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946236.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20988156 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 7940 | 0.0 | 17.519005 | 5 |
CCGTGAG | 6160 | 0.0 | 15.18013 | 9 |
CTATACT | 11455 | 0.0 | 14.977578 | 4 |
TCTATAC | 14685 | 0.0 | 14.948126 | 3 |
TATACTG | 10700 | 0.0 | 14.800773 | 5 |
TACCGTG | 5825 | 0.0 | 14.681949 | 7 |
CTAGTAC | 7760 | 0.0 | 14.598193 | 3 |
ATACCGT | 7265 | 0.0 | 14.488752 | 6 |
GTATAGA | 15415 | 0.0 | 14.412244 | 1 |
ACATGAC | 41165 | 0.0 | 14.337243 | 8 |
TAGTACT | 13900 | 0.0 | 14.236757 | 4 |
CATACAC | 59805 | 0.0 | 14.037436 | 3 |
CATGACA | 42410 | 0.0 | 13.750123 | 9 |
ACACATG | 57885 | 0.0 | 13.703296 | 6 |
ACCGTGA | 7445 | 0.0 | 13.633055 | 8 |
CTATACC | 11415 | 0.0 | 13.630001 | 4 |
GTGTATG | 55920 | 0.0 | 13.3496275 | 1 |
GTATAGG | 6900 | 0.0 | 13.233836 | 1 |
GTCGCGC | 715 | 0.0 | 13.144015 | 8 |
CACATGA | 54535 | 0.0 | 13.088526 | 7 |