FastQCFastQC Report
Tue 15 Nov 2016
SRR1945902.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945902.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17081588
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA175450.06.64588594-95
TCGGAAG129850.06.62050894-95
GAGCGTC38400.06.12249994-95
ATCGGAA168500.05.961632394-95
CGGAAGA158250.05.4023694-95
AGATCGG268000.05.210354394-95