FastQCFastQC Report
Tue 15 Nov 2016
SRR1946147.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946147.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46287486
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC563410.12171972355551994No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG159650.014.0127225
TACCGTG115550.012.6901917
TATACTG237800.012.3129095
ATACCGT147150.012.1688396
TCTATAC300600.012.0858143
CTATACT244400.011.6919594
CATACAC1554300.011.5478263
ACATGAC1255950.011.5442548
CCGTGAG117100.011.4786869
GTATAGA332900.011.3141581
ACACATG1490250.011.2872216
CATGACA1280500.011.1724429
CACATGA1449400.011.0119167
ACCGTGA153450.010.7197388
CTAGTAC148950.010.696573
TCATACA1684400.010.5024522
ATCATAC1702800.010.1539161
GTATTAG262850.010.0717291
GTACTAG181650.010.0438421
CTATACC242750.010.0095884