Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945966.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 56264614 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 750266 | 1.3334597834439954 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 257924 | 0.4584124579615884 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG | 93570 | 0.1663034602885572 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 73812 | 0.13118725030265024 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGC | 57000 | 0.10130701332101914 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 248225 | 0.0 | 58.779396 | 9 |
AGCGGTT | 246685 | 0.0 | 58.447292 | 10 |
GCGGTTC | 245390 | 0.0 | 58.418713 | 11 |
AGAGCGG | 260305 | 0.0 | 56.931652 | 8 |
TATGCCG | 159425 | 0.0 | 56.82674 | 43 |
CGTATGC | 165175 | 0.0 | 56.210392 | 41 |
ATGCCGT | 136270 | 0.0 | 56.13996 | 44 |
GTATGCC | 163970 | 0.0 | 56.014904 | 42 |
TGCCGTC | 131300 | 0.0 | 55.779343 | 45 |
CGAGACC | 230985 | 0.0 | 55.515614 | 29 |
GAGACCG | 229660 | 0.0 | 55.363503 | 30 |
GTTCAGC | 253640 | 0.0 | 55.282627 | 14 |
GCCGTCT | 121075 | 0.0 | 55.19064 | 46 |
CGGTTCA | 258585 | 0.0 | 55.04775 | 12 |
CAGCAGG | 251475 | 0.0 | 54.815685 | 17 |
AATGCCG | 241640 | 0.0 | 54.77441 | 24 |
CCGATAT | 156040 | 0.0 | 54.602444 | 34 |
TCGTATG | 181085 | 0.0 | 54.533596 | 40 |
GGTTCAG | 260275 | 0.0 | 54.47676 | 13 |
GACCGAT | 224830 | 0.0 | 54.429195 | 32 |