FastQCFastQC Report
Tue 15 Nov 2016
SRR1946083.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946083.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28817292
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG37600.016.8584363
GGTCGCC37800.016.21334663
CGGCATT45750.016.1480881
CGCCGTA38550.015.62599966
GCCGTAT41200.014.62197367
CGTATGC43450.014.27302761
ATGCCGT45000.014.08079364
TGCCGTC45950.013.79260265
GTATGCC46150.013.436933562
TGGTCGC44200.013.31636262
GCCGTCT48950.013.021543566
CCGTATC51650.012.13921768
AGCGTCG51100.011.98561930
GCGTCGT53450.011.6566731
CGAGATC111100.011.64849918
GAGCGTC52000.011.57505729
CGTGTAG52100.011.55960835
CCGAGAT122350.010.71941617
GAGACCG62100.010.65345650
AAGAGCG120600.010.58928627