Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946237.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23487592 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 8620 | 0.0 | 15.648068 | 5 |
TACCGTG | 6050 | 0.0 | 14.837617 | 7 |
CCGTGAG | 5460 | 0.0 | 14.116836 | 9 |
TATACTG | 10915 | 0.0 | 14.037185 | 5 |
GTCGCGC | 975 | 0.0 | 13.979109 | 8 |
TCTATAC | 14930 | 0.0 | 13.787973 | 3 |
ATACCGT | 7190 | 0.0 | 13.661662 | 6 |
CTATACT | 11620 | 0.0 | 13.549548 | 4 |
CATACAC | 59635 | 0.0 | 13.492384 | 3 |
ACATGAC | 50450 | 0.0 | 13.079529 | 8 |
ACCGTGA | 7575 | 0.0 | 12.905262 | 8 |
ACACATG | 61495 | 0.0 | 12.740366 | 6 |
GTATAGA | 16135 | 0.0 | 12.690023 | 1 |
CATGACA | 52235 | 0.0 | 12.542593 | 9 |
GTGTATG | 56635 | 0.0 | 12.541412 | 1 |
CACATGA | 59775 | 0.0 | 12.352157 | 7 |
CTAGTAC | 7420 | 0.0 | 12.034717 | 3 |
TCATACA | 66395 | 0.0 | 11.835663 | 2 |
GTATATA | 36980 | 0.0 | 11.710167 | 1 |
TATACAG | 10895 | 0.0 | 11.64723 | 5 |