FastQCFastQC Report
Tue 15 Nov 2016
SRR1946181.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946181.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33570814
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG125600.013.946475
TATACTG154400.012.5312685
TCTATAC200150.012.2981393
TACCGTG96900.012.0677217
ACCGTGA108100.012.0339348
CTATACT159450.011.8138824
CCGTGAG78150.011.5980379
GCCGTGC33900.011.3597218
ATACCGT94550.011.2749176
GTATAGA209700.010.771541
GTACTAG124300.010.44895651
GTCGCGC19350.010.4361688
CATACAC782100.010.192563
GGACCGT33700.010.1728346
TAGACTG77300.010.1457015
CTAGGCT94500.010.0910654
GTATATA455300.09.9325491
TAGGCTG109050.09.7756425
GCTGTCC94900.09.7488558
ACATGAC569900.09.6990998