Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946141.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33243196 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 16245 | 0.0 | 13.224407 | 5 |
GTCGCGC | 1610 | 0.0 | 13.135269 | 8 |
TATACCG | 12340 | 0.0 | 13.104578 | 5 |
CTATACT | 17550 | 0.0 | 12.699602 | 4 |
TCTATAC | 19900 | 0.0 | 12.215924 | 3 |
ACATGAC | 74755 | 0.0 | 11.4478 | 8 |
GTATATA | 48790 | 0.0 | 11.403192 | 1 |
CATACAC | 99880 | 0.0 | 11.402089 | 3 |
GTATAGA | 21935 | 0.0 | 11.342024 | 1 |
TATACAG | 14510 | 0.0 | 11.112364 | 5 |
CTAGTAC | 11725 | 0.0 | 11.028304 | 3 |
ATACCGT | 10105 | 0.0 | 10.929745 | 6 |
TAGGCTG | 9725 | 0.0 | 10.924424 | 5 |
CATGACA | 77700 | 0.0 | 10.86268 | 9 |
ACACATG | 97505 | 0.0 | 10.801732 | 6 |
TAGACCG | 8415 | 0.0 | 10.781592 | 5 |
GTATAGG | 12670 | 0.0 | 10.764502 | 1 |
ACTGTGC | 5155 | 0.0 | 10.757359 | 8 |
CACATGA | 93595 | 0.0 | 10.730418 | 7 |
CCGTGAG | 8330 | 0.0 | 10.719149 | 9 |