FastQCFastQC Report
Tue 15 Nov 2016
SRR1946143.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946143.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31300644
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG112550.013.2404565
CCGTGAG91300.013.1770529
ACCGTGA113750.012.5594868
CTAGTAC122550.012.3544683
GTATAGA216300.012.3062011
TACCGTG88200.012.148767
TAGACCG78000.012.0538175
TCTATAC191450.011.9852183
ATACCGT103800.011.9082236
ACATGAC891450.011.6821428
TATACTG150200.011.6742265
GTACTAG165200.011.5294631
CTATACT151450.011.4871944
CATGACA905100.011.3449849
CATACAC1143400.011.3375723
ACACATG1117850.011.1711176
TGTAGGG160450.010.9895342
CACATGA1078500.010.97674757
CCTAGTA144750.010.9146162
GACCGTG57700.010.9142697