FastQCFastQC Report
Tue 15 Nov 2016
SRR1946031.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946031.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31658620
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGAGCGG127550.018.44491294
TATACCG107850.017.4082265
CTGAGCG136450.016.10840894
TACCGTG89200.015.740657
TATACTG154300.015.4751395
ATACCGT96300.015.4549826
CTATACT155150.014.9980544
CTAGTAC111800.014.9926973
AGACCGG79700.014.93580994
GTATAGA225650.014.6134571
TCTATAC207750.014.4462623
ACCGTGA106550.013.7902398
CATACAC982600.013.78510953
CCGTGAG81000.013.7489129
TATACAG143350.013.5870745
TAGGCTG96150.013.5371065
CTAGGCT79950.013.3520124
ACACATG955550.013.3371146
ACATGAC800850.013.1470098
TAGTACT208450.012.9824374