FastQCFastQC Report
Tue 15 Nov 2016
SRR1945895.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945895.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13121204
Sequences flagged as poor quality0
Sequence length101
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG105400.08.0665394-95
ATCGGAA137950.06.9551194-95
GATCGGA147750.06.49378994-95
CGGAAGA122050.06.362888394-95
TAGATCG74300.05.146137794-95