FastQCFastQC Report
Tue 15 Nov 2016
SRR1945998.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945998.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45878018
Sequences flagged as poor quality0
Sequence length76
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA52750.012.94236656
GGTCGCC62850.012.02889553
AATGCCG103450.012.00827934
GCCGTAT59250.011.40589457
GAGACCG117350.010.646740
TATGCCG53550.010.523153
CGTGTAG101150.010.1770525
CGTATGC63400.010.15645951
CGAGACC130450.09.5506639
TGCCGAG132100.09.40563536
GCGTCGT117100.09.35836321
AGCGTCG120150.09.17895120
GTCGTGT119450.09.17467223
CCGTATC71400.09.12189558
TGGTCGC83300.08.99105252
GAGCGTC123400.08.90828619
GACCGAT122650.08.90168842
GAGCGGT143300.08.84386419
GTATGCC65250.08.58185552
ATGCCGA147600.08.55973235