FastQCFastQC Report
Tue 15 Nov 2016
SRR1946135.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946135.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37791510
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG120250.015.0119065
TACCGTG88950.013.3148487
TCTATAC230150.013.0756683
ATACCGT110400.013.0698636
TATACTG170600.013.0062675
CTATACT188700.012.5589554
CCGTGAG98650.012.4337489
GTACTAG157500.012.1831821
GTATAGA259400.011.9299071
ACCGTGA116850.011.5830368
ACATGAC828200.011.5247998
TATACAG167400.011.48570255
CATACAC1084150.011.441433
CATGACA844500.011.1632329
ACACATG1086100.011.1345256
CTAGTAC116950.011.016543
CACATGA1060650.010.8827317
GTATAGG127550.010.7667221
TACTAGG175900.010.6393762
CTATACC181600.010.5124774