FastQCFastQC Report
Tue 15 Nov 2016
SRR1946049.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946049.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65384864
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGTAC252750.015.06627753
GTCGCGC40950.014.6753858
TATACCG203000.013.9226085
CATACAC2112050.013.765853
ACATGAC1665300.013.73288
CGAGGGG88450.013.66934794
CTATACT308900.013.6044624
CTAGGCT181800.013.4819564
ACACATG2141350.013.4685456
CACATGA2064050.013.1564947
CATGACA1753350.012.9896099
GTATAGA386050.012.8898831
TAGTACT438650.012.802344
CCTAGTA283900.012.7846852
TATACTG335000.012.7531285
TCATACA2271100.012.7521692
GCTGTCC181850.012.7282028
TATACAG284500.012.6735745
TCTATAC375650.012.59950353
CGCCGTA135200.012.42235694