FastQCFastQC Report
Tue 15 Nov 2016
SRR1946175.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946175.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41556118
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG149350.015.2826935
CCGTGAG125250.013.7615429
TACCGTG120850.013.6018197
ACCGTGA158400.013.4313678
CTAGTAC135050.013.0448483
TATACTG205250.012.9967275
TCTATAC287450.012.7641253
ATACCGT141000.012.6905046
CTATACT220250.012.3287624
GTACTAC164650.011.4381486
TAGTACT270000.011.4142574
TAGACCG98600.011.3838675
GTATAGA292250.011.2706541
CATACAC992550.011.2080913
CTATACC223950.011.2020564
GTATTAG253950.011.0063621
GTATAGG143400.010.8941781
GTACTAG174150.010.8619591
ACATGAC843500.010.7961758
CCGTGCG26650.010.75007259