FastQCFastQC Report
Wed 16 Nov 2016
SRR1945951.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945951.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89805902
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC145750.011.00448744-45
CCGTACG193550.010.01287534-35
TATGCCG165450.09.8203948-49
TGCCGTC159450.09.79321850-51
CGCCGTA162400.09.659801546-47
ATGCCGT173300.09.22702250-51
GCCGTCT170250.09.08956452-53
TGGTCGC183800.08.40829842-43
CGTATGC205600.08.19867846-47
CGTACGT229800.08.1408434-35
GTATGCC208500.08.01730248-49
AGAGCGT509300.07.69838149
GCCGTAT217050.07.41025248-49
TCGGAAG1090350.07.194574
AAGAGCG597850.06.7441038
CACCGTA310500.06.63595432-33
CCGTATC239250.06.615014648-49
GTCACCG321600.06.522169630-31
CGGAAGA1231950.06.4892125
GTCGCCG258900.06.420510344-45