Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945992.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44041974 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 6375 | 0.0 | 16.177347 | 53 |
CGCCGTA | 5575 | 0.0 | 15.365368 | 56 |
GCCGTAT | 6010 | 0.0 | 14.429174 | 57 |
TGGTCGC | 9070 | 0.0 | 11.2763195 | 52 |
CCGTATC | 7690 | 0.0 | 10.777203 | 58 |
TATGCCG | 5810 | 0.0 | 10.710489 | 53 |
GTCGCCG | 11030 | 0.0 | 9.350625 | 54 |
ATCAGCC | 13670 | 0.0 | 9.204686 | 2 |
CTCGGTG | 14735 | 0.0 | 9.104597 | 47 |
CGTATGC | 7345 | 0.0 | 9.088995 | 51 |
TCGGTGG | 14995 | 0.0 | 8.854181 | 48 |
TGCCGTC | 6420 | 0.0 | 8.658878 | 55 |
GGCTGAT | 13545 | 0.0 | 8.59291 | 2 |
CGTATCA | 9990 | 0.0 | 8.469461 | 59 |
GTATGCC | 7690 | 0.0 | 8.455263 | 52 |
CCGAGAT | 19650 | 0.0 | 7.9299417 | 17 |
GGTGGTC | 14650 | 0.0 | 7.673578 | 50 |
ATGCCGT | 7120 | 0.0 | 7.5128636 | 54 |
GCCGTCT | 7390 | 0.0 | 7.4280877 | 56 |
TCGTATG | 11615 | 0.0 | 7.3497505 | 50 |