FastQCFastQC Report
Tue 15 Nov 2016
SRR1946180.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946180.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35611768
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG118500.013.4751285
TATACTG180750.012.0562445
TCTATAC225900.011.3753893
CTATACT193700.011.2050464
CATACAC981650.011.18878653
CCGTGAG98650.011.0452029
ACATGAC792300.010.812258
ACACATG972400.010.7608886
GTATTAG209450.010.6944091
CTAGTAC126550.010.6911763
CATGACA804200.010.5880629
TATGAGC157900.010.5686594
ATACCGT115000.010.4549036
TACCGTG95500.010.4258677
CACATGA940950.010.3968667
GTATAGG132900.010.3746361
GTGTATG919250.010.3457721
ACCGTGA127250.010.3343028
GTACTAG172150.010.3327281
GTATAGA244750.010.3248031