Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945970.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 48080988 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 23540 | 0.0 | 8.565565 | 94-95 |
GCCGTCT | 22540 | 0.0 | 8.397032 | 94-95 |
CGTATGC | 38795 | 0.0 | 8.212884 | 94-95 |
GGTCGCC | 27635 | 0.0 | 8.156719 | 94-95 |
ATGCCGT | 27135 | 0.0 | 8.01785 | 94-95 |
TATGCCG | 30525 | 0.0 | 7.9920516 | 94-95 |
GTATGCC | 34495 | 0.0 | 7.8304877 | 94-95 |
TGGTCGC | 26870 | 0.0 | 7.5305815 | 94-95 |
TCGTATG | 45980 | 0.0 | 7.286327 | 94-95 |
CGCCGTA | 18045 | 0.0 | 6.8519325 | 94-95 |
GTCGCCG | 28145 | 0.0 | 6.834613 | 94-95 |
CTCGTAT | 50980 | 0.0 | 6.427114 | 94-95 |
GTGGTCG | 32730 | 0.0 | 6.137232 | 92-93 |
TCGCCGT | 23575 | 0.0 | 5.900255 | 94-95 |
GCCGTAT | 20845 | 0.0 | 5.874514 | 94-95 |
CATCTCG | 68310 | 0.0 | 5.68767 | 94-95 |
CCGTATC | 19765 | 0.0 | 5.654155 | 94-95 |
TCTCGTA | 59330 | 0.0 | 5.6534624 | 92-93 |
GGTGGTC | 37780 | 0.0 | 5.612608 | 92-93 |
CCGTCTT | 30695 | 0.0 | 5.592889 | 94-95 |