Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946158.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 32851480 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGAGC | 14610 | 0.0 | 15.085224 | 94 |
TATACTG | 17200 | 0.0 | 11.551572 | 5 |
CTATACT | 17655 | 0.0 | 11.4208145 | 4 |
TATACCG | 10005 | 0.0 | 11.173494 | 5 |
GTATAGG | 12150 | 0.0 | 10.772925 | 1 |
CATACAC | 93785 | 0.0 | 10.733578 | 3 |
TCTATAC | 21020 | 0.0 | 10.686946 | 3 |
GTATATA | 43705 | 0.0 | 10.675978 | 1 |
ACACATG | 89370 | 0.0 | 10.290917 | 6 |
GTGTATG | 88790 | 0.0 | 10.213095 | 1 |
ACATGAC | 71995 | 0.0 | 10.177852 | 8 |
GTATAGA | 22500 | 0.0 | 10.169951 | 1 |
TAGAGCG | 6365 | 0.0 | 10.036209 | 5 |
TATACTA | 28800 | 0.0 | 9.9650135 | 5 |
CATGACA | 72865 | 0.0 | 9.87583 | 9 |
TAGACAG | 11125 | 0.0 | 9.837508 | 5 |
GAGCGCG | 2545 | 0.0 | 9.781856 | 7 |
CACATGA | 86600 | 0.0 | 9.719709 | 7 |
TCATACA | 102725 | 0.0 | 9.591648 | 2 |
GTATAAT | 24445 | 0.0 | 9.572635 | 1 |