FastQCFastQC Report
Tue 15 Nov 2016
SRR1946255.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946255.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86509366
Sequences flagged as poor quality0
Sequence length100
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG301100.012.4800875
TATACTG420350.011.4793655
CTATACT412050.011.3565574
GTATAGA558700.011.2852331
TCTATAC510900.011.2480863
CATACAC1995550.010.8119523
GTATATA1134800.010.5856091
ACACATG2001600.010.1924276
GTATAGG322150.010.121841
ATACCGT276650.010.1123386
TACCGTG267750.010.0272127
ACATGAC1522750.09.94195658
CACATGA1875300.09.7633487
GTATTAG482100.09.6525821
TCATACA2192250.09.6372272
TATACAG379350.09.5338395
TAGTACT447350.09.5247654
TAATACT597300.09.4484874
CTAGTAC256650.09.4364633
CATGACA1580550.09.3971049