Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946037.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 54180260 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 17775 | 0.0 | 15.002095 | 5 |
GTCGCGC | 2315 | 0.0 | 14.196284 | 8 |
TATACTG | 27760 | 0.0 | 14.155304 | 5 |
CTATACT | 28740 | 0.0 | 13.854282 | 4 |
TCTATAC | 35710 | 0.0 | 13.779909 | 3 |
CTAGTAC | 18330 | 0.0 | 13.678982 | 3 |
CATACAC | 122900 | 0.0 | 13.035632 | 3 |
TATACAG | 25695 | 0.0 | 12.734954 | 5 |
ATACCGT | 16160 | 0.0 | 12.550564 | 6 |
TAGTACT | 34970 | 0.0 | 12.285714 | 4 |
GTATAGA | 37245 | 0.0 | 12.2375555 | 1 |
TACCGTG | 13665 | 0.0 | 12.196814 | 7 |
TCGCGCG | 3010 | 0.0 | 12.166223 | 9 |
ACACATG | 123180 | 0.0 | 11.967689 | 6 |
GTACTAG | 22545 | 0.0 | 11.921659 | 1 |
ACATGAC | 102710 | 0.0 | 11.916698 | 8 |
TAGGCTG | 16235 | 0.0 | 11.885097 | 5 |
GTATAGG | 19895 | 0.0 | 11.738251 | 1 |
GTGTATG | 117185 | 0.0 | 11.736582 | 1 |
GTATATA | 82050 | 0.0 | 11.648319 | 1 |