FastQCFastQC Report
Tue 15 Nov 2016
SRR1946247.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946247.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22621368
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG106950.015.2037455
TATACCG67050.013.6675645
CATACAC619950.013.0408473
TCTATAC133550.013.0224243
CTATACT113650.012.5316184
GTGTATG613200.012.4187051
TACCGTG53000.012.4131647
ACATGAC511600.012.3819138
CCGTGCG13150.012.1500149
ACACATG632450.012.1486136
CATGACA517300.012.0727469
ATACCGT60500.011.8842336
TATACAG103950.011.8449185
GTATATA331150.011.8249271
CACATGA609250.011.6855027
TCATACA695450.011.5710262
GATTGAG568350.011.4598177
GTATAGA143550.011.34417251
ATCATAC687700.011.2923621
TTGAGTA601900.011.1643989