Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946221.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26987382 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10140 | 0.0 | 18.306068 | 5 |
CCGTGAG | 6690 | 0.0 | 15.663271 | 9 |
ATACCGT | 9000 | 0.0 | 15.402816 | 6 |
TACCGTG | 7895 | 0.0 | 15.29641 | 7 |
TCTATAC | 16775 | 0.0 | 14.626501 | 3 |
TATACTG | 12830 | 0.0 | 14.504556 | 5 |
ACCGTGA | 9140 | 0.0 | 14.292359 | 8 |
CTATACT | 13285 | 0.0 | 13.763235 | 4 |
GTATAGA | 17890 | 0.0 | 13.70862 | 1 |
CATACAC | 69390 | 0.0 | 13.47996 | 3 |
ACATGAC | 59470 | 0.0 | 13.392976 | 8 |
CATGACA | 61100 | 0.0 | 12.912585 | 9 |
ACACATG | 72950 | 0.0 | 12.722205 | 6 |
TAGGCTG | 8275 | 0.0 | 12.720844 | 5 |
CTATACC | 14160 | 0.0 | 12.680388 | 4 |
GTGTATG | 66965 | 0.0 | 12.631838 | 1 |
CACATGA | 70210 | 0.0 | 12.555742 | 7 |
CCGTGCG | 2070 | 0.0 | 12.258212 | 9 |
TAGTACT | 15600 | 0.0 | 11.9919815 | 4 |
CTAGTAC | 8530 | 0.0 | 11.847369 | 3 |