FastQCFastQC Report
Tue 15 Nov 2016
SRR1946206.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946206.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22842330
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG71350.015.2819435
CTATACT116050.015.024964
CTAGTAC78500.014.5485993
TATACTG109200.014.54717355
CATACAC645900.013.8325213
TCTATAC140000.013.8310053
ACATGAC519650.013.801538
TAGTACT149400.013.7157774
ACACATG639450.013.4648816
ATACCGT62350.013.3419846
TATACAG104650.013.3383415
CATGACA528700.013.3163789
GTGTATG597050.013.2847991
CACATGA629800.013.1338987
TAGACCG58950.012.9953615
GTATAGA142000.012.9946171
GTACTAG98150.012.6613321
TCATACA716050.012.5235152
GATTGAG566550.012.2276477
CCGTGAG63100.012.1406489