Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945961.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20405412 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 10140 | 0.0 | 16.03946 | 5 |
CTATACT | 10545 | 0.0 | 14.980573 | 4 |
TATACCG | 6530 | 0.0 | 14.756803 | 5 |
TCTATAC | 12460 | 0.0 | 14.45222 | 3 |
ACATGAC | 51420 | 0.0 | 14.048623 | 8 |
CATACAC | 59210 | 0.0 | 13.832699 | 3 |
CTAGTAC | 6935 | 0.0 | 13.7626915 | 3 |
CATGACA | 52040 | 0.0 | 13.564952 | 9 |
CCGTGCG | 1080 | 0.0 | 13.49036 | 9 |
ACACATG | 60250 | 0.0 | 13.472875 | 6 |
GTGTATG | 56380 | 0.0 | 13.466155 | 1 |
TATACAG | 9865 | 0.0 | 13.198794 | 5 |
CACATGA | 58510 | 0.0 | 13.061596 | 7 |
GATTGAG | 53085 | 0.0 | 13.032923 | 7 |
GTACTAG | 8630 | 0.0 | 12.92623 | 1 |
GTATAGA | 13635 | 0.0 | 12.876208 | 1 |
TCATACA | 66205 | 0.0 | 12.381714 | 2 |
ATTGAGT | 58475 | 0.0 | 12.313472 | 8 |
TTGAGTA | 58045 | 0.0 | 12.26686 | 9 |
GTATATA | 32135 | 0.0 | 12.186509 | 1 |