Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946187.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33282458 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12070 | 0.0 | 12.929071 | 5 |
TATACTG | 16380 | 0.0 | 12.310619 | 5 |
TACCGTG | 8410 | 0.0 | 11.95583 | 7 |
ATACCGT | 10400 | 0.0 | 11.791237 | 6 |
CTATACT | 18080 | 0.0 | 11.5949545 | 4 |
TCTATAC | 21310 | 0.0 | 11.205414 | 3 |
TATGAGC | 15220 | 0.0 | 11.200165 | 94 |
CCGTGAG | 7545 | 0.0 | 10.95961 | 9 |
GTATAGA | 22545 | 0.0 | 10.8472395 | 1 |
CATACAC | 89770 | 0.0 | 10.566656 | 3 |
ACATGAC | 72920 | 0.0 | 10.431336 | 8 |
GTCGCGC | 2075 | 0.0 | 10.415485 | 8 |
ACACATG | 88055 | 0.0 | 10.191344 | 6 |
CATGACA | 74310 | 0.0 | 10.052905 | 9 |
TATACAG | 15665 | 0.0 | 9.901936 | 5 |
GTATATA | 46645 | 0.0 | 9.860521 | 1 |
GTATAGG | 12165 | 0.0 | 9.858122 | 1 |
GTGTATG | 85215 | 0.0 | 9.779436 | 1 |
CACATGA | 85430 | 0.0 | 9.75675 | 7 |
ACCGTGA | 10320 | 0.0 | 9.742577 | 8 |