Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946107.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31766190 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10575 | 0.0 | 14.269049 | 5 |
TATACTG | 15020 | 0.0 | 12.237062 | 5 |
TCTATAC | 18380 | 0.0 | 12.200494 | 3 |
CTATACT | 15575 | 0.0 | 11.892488 | 4 |
ATACCGT | 8935 | 0.0 | 11.889073 | 6 |
GTATAGA | 20155 | 0.0 | 11.853488 | 1 |
GTATAGG | 11015 | 0.0 | 11.783921 | 1 |
CATACAC | 89760 | 0.0 | 11.773837 | 3 |
TACCGTG | 7595 | 0.0 | 11.572853 | 7 |
GTATATA | 43740 | 0.0 | 11.375545 | 1 |
ACACATG | 91150 | 0.0 | 11.123145 | 6 |
ACATGAC | 72345 | 0.0 | 11.070463 | 8 |
GTACTAG | 10915 | 0.0 | 10.943979 | 1 |
TAGGCTG | 9140 | 0.0 | 10.74906 | 5 |
CACATGA | 87015 | 0.0 | 10.625194 | 7 |
TCATACA | 98640 | 0.0 | 10.580524 | 2 |
CATGACA | 74935 | 0.0 | 10.561772 | 9 |
TATACAG | 14185 | 0.0 | 10.471964 | 5 |
CTATACC | 14810 | 0.0 | 10.348254 | 4 |
CCGTGAG | 6995 | 0.0 | 10.346952 | 9 |