Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946161.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33441522 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGAGC | 15320 | 0.0 | 14.478138 | 94 |
TATACCG | 11230 | 0.0 | 14.430613 | 5 |
TATACTG | 17170 | 0.0 | 14.11643 | 5 |
CTATACT | 17845 | 0.0 | 13.5382595 | 4 |
TCTATAC | 21400 | 0.0 | 13.264332 | 3 |
TAGACCG | 8805 | 0.0 | 12.910154 | 5 |
CTAGTAC | 11685 | 0.0 | 12.628831 | 3 |
CCGTGAG | 9560 | 0.0 | 12.529402 | 9 |
GACCGTG | 6815 | 0.0 | 12.406654 | 7 |
GTATAGA | 22980 | 0.0 | 12.271737 | 1 |
TATACAG | 15975 | 0.0 | 11.996781 | 5 |
AGACCGT | 8900 | 0.0 | 11.769632 | 6 |
GTGTATG | 89245 | 0.0 | 11.758595 | 1 |
ACATGAC | 75555 | 0.0 | 11.68185 | 8 |
GTATAGG | 12230 | 0.0 | 11.663944 | 1 |
GTACTAG | 16640 | 0.0 | 11.51517 | 1 |
CATACAC | 96315 | 0.0 | 11.510555 | 3 |
ACCGTGA | 12315 | 0.0 | 11.366583 | 8 |
ACACATG | 93480 | 0.0 | 11.255826 | 6 |
CATGACA | 78260 | 0.0 | 11.176038 | 9 |