Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945793.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 74245840 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 146359 | 0.19712754276872615 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGGCAT | 16700 | 0.0 | 40.604565 | 1 |
CGGCATT | 20985 | 0.0 | 34.203835 | 2 |
GGCATTC | 28655 | 0.0 | 27.929369 | 3 |
CCGGGAT | 15725 | 0.0 | 25.89538 | 18 |
AACCGGG | 20945 | 0.0 | 25.856474 | 16 |
GCATTCC | 30260 | 0.0 | 25.477682 | 4 |
CCGAGAT | 54170 | 0.0 | 25.419006 | 17 |
TGAACCG | 31020 | 0.0 | 25.16197 | 14 |
CCTGCTG | 23730 | 0.0 | 23.986864 | 9 |
ACCGGGA | 21615 | 0.0 | 23.500315 | 17 |
GCTGAAC | 26745 | 0.0 | 23.205904 | 12 |
GACCGAT | 60330 | 0.0 | 22.778193 | 32 |
CGAGATC | 60200 | 0.0 | 22.721668 | 18 |
CTGAACC | 35210 | 0.0 | 22.237272 | 13 |
CCGATAT | 38000 | 0.0 | 22.147482 | 34 |
CGAGACC | 73270 | 0.0 | 22.111822 | 29 |
GAGACCG | 72675 | 0.0 | 21.961355 | 30 |
ATTCCTG | 30165 | 0.0 | 21.395908 | 6 |
AGACCGA | 73995 | 0.0 | 21.139488 | 31 |
GAACCGG | 27600 | 0.0 | 20.610773 | 15 |