FastQCFastQC Report
Tue 15 Nov 2016
SRR1946072.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946072.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85222586
Sequences flagged as poor quality0
Sequence length76
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATGCCG178000.05.64096424
GAGCGGT207000.05.20359959
CGAGACC188000.05.15836149
GAGACCG182050.05.115494750
TGCCGAG204950.05.033056315