FastQCFastQC Report
Tue 15 Nov 2016
SRR1946133.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946133.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46002104
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG159900.012.4351125
TATACTG218900.012.2186795
TAGGCTG147450.011.8592165
ACATGAC1174250.011.6713998
CATACAC1362350.011.6425283
GTATATA638500.011.6220151
CTAGGCT132550.011.2781594
CATGACA1224600.011.1257579
ACACATG1402650.011.071676
CACATGA1350000.010.9949847
TATACAG207650.010.7980225
TCTATAC272550.010.7628993
TCATACA1492300.010.556262
CTATACT231300.010.5483034
ATCATAC1474300.010.2899641
GTGTATG1284200.010.1983031
GTATAGA292550.010.1751071
CTGTCCC175450.09.8575759
GTATAGG174050.09.753681
GCTGTCC144550.09.7218528