FastQCFastQC Report
Tue 15 Nov 2016
SRR1945873.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945873.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20507968
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC226270.11033272530949921No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG96850.016.1625425
TATACCG70900.015.9121935
CATACAC646300.014.4930243
ACATGAC498600.014.4219758
ATACCGT58000.013.9387626
ACACATG643700.013.9248636
CATGACA501100.013.9091399
GTATAGA123400.013.8479041
TCTATAC122350.013.835743
CACATGA620550.013.8224647
TACCGTG53150.013.618117
TATACAG95750.013.3535015
CCGTGAG48550.013.2621779
TCATACA697100.013.1971582
ATCATAC708100.012.7045331
TACACTG60900.012.6587725
CTATACT100350.012.6512464
GTGTATG603550.012.6043581
CTAGTAC58350.012.4909273
ACCGTGA67100.012.3975638