FastQCFastQC Report
Tue 15 Nov 2016
SRR1945876.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945876.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45946948
Sequences flagged as poor quality0
Sequence length101
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC648720.14118892075269068TruSeq Adapter, Index 12 (100% over 50bp)

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTCT226350.018.92499748-49
TGCCGTC228500.018.62236448-49
ATGCCGT244300.017.53694246-47
TATGCCG261350.016.79224846-47
GTATGCC286250.015.34199444-45
CCGTCTT300900.014.85774650-51
CGTATGC306000.014.56888344-45
CTGCTTG289700.014.44878656-57
TCGTATG372850.012.07700142-43
CGTCTTC377100.011.68574150-51
CTTCTGC391500.011.64259354-55
CTCGTAT387800.010.8638842-43
TTCTGCT491750.09.442615554-55
TCTGCTT509500.09.22094556-57
TCTCGTA454200.09.14113440-41
TGCTTGA425400.08.81976358-59
GCTTGAA420250.08.53795958-59
AATCTCG564900.08.19772838-39
ATCTCGT533700.08.153954540-41
GGTCGCC194250.08.02582994-95