FastQCFastQC Report
Tue 15 Nov 2016
SRR1946069.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946069.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45911872
Sequences flagged as poor quality0
Sequence length100
%GC35

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC90300.022.8236848-49
TATGCCG101600.022.297646-47
GCCGTCT95350.021.41770448-49
CGTATGC112700.020.39340444-45
ATGCCGT102400.020.19563546-47
GTATGCC125250.018.70648844-45
GGGGCGC19950.018.02327742-43
GGGCCCC38950.017.43673544-45
GGCGCCC16050.016.25259644-45
GGGCGCC21450.014.13343242-43
GAGCACA369050.014.1243729
AGAGCAC375200.013.8799198
TCGTATG175150.013.68595942-43
CTCGTAT180200.013.57629142-43
ACTGACC195550.013.54186532-33
GCGCCCG11750.013.20021144-45
CCCGGGG54700.013.19009938-39
CACTGAC206250.013.15803230-31
CCGGGGG78450.012.94159538-39
GGGGGCC59700.012.63618442-43