Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946255.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 86509366 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 30110 | 0.0 | 12.480087 | 5 |
TATACTG | 42035 | 0.0 | 11.479365 | 5 |
CTATACT | 41205 | 0.0 | 11.356557 | 4 |
GTATAGA | 55870 | 0.0 | 11.285233 | 1 |
TCTATAC | 51090 | 0.0 | 11.248086 | 3 |
CATACAC | 199555 | 0.0 | 10.811952 | 3 |
GTATATA | 113480 | 0.0 | 10.585609 | 1 |
ACACATG | 200160 | 0.0 | 10.192427 | 6 |
GTATAGG | 32215 | 0.0 | 10.12184 | 1 |
ATACCGT | 27665 | 0.0 | 10.112338 | 6 |
TACCGTG | 26775 | 0.0 | 10.027212 | 7 |
ACATGAC | 152275 | 0.0 | 9.9419565 | 8 |
CACATGA | 187530 | 0.0 | 9.763348 | 7 |
GTATTAG | 48210 | 0.0 | 9.652582 | 1 |
TCATACA | 219225 | 0.0 | 9.637227 | 2 |
TATACAG | 37935 | 0.0 | 9.533839 | 5 |
TAGTACT | 44735 | 0.0 | 9.524765 | 4 |
TAATACT | 59730 | 0.0 | 9.448487 | 4 |
CTAGTAC | 25665 | 0.0 | 9.436463 | 3 |
CATGACA | 158055 | 0.0 | 9.397104 | 9 |