Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946105.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40714460 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 13150 | 0.0 | 12.3655815 | 5 |
TATACTG | 20865 | 0.0 | 11.577344 | 5 |
CCGTGCG | 2470 | 0.0 | 11.035811 | 9 |
CTATACT | 21340 | 0.0 | 10.945262 | 4 |
CATACAC | 116360 | 0.0 | 10.860537 | 3 |
ACACATG | 111490 | 0.0 | 10.656273 | 6 |
TCTATAC | 26365 | 0.0 | 10.623868 | 3 |
GTATAGA | 28935 | 0.0 | 10.598625 | 1 |
GTATATA | 61440 | 0.0 | 10.296662 | 1 |
ACATGAC | 85645 | 0.0 | 10.266883 | 8 |
CACATGA | 107445 | 0.0 | 10.095173 | 7 |
CCGTGAG | 9710 | 0.0 | 10.067401 | 9 |
TATACAG | 19470 | 0.0 | 9.993061 | 5 |
GTATTAG | 25020 | 0.0 | 9.982347 | 1 |
CATGACA | 87540 | 0.0 | 9.974989 | 9 |
TCATACA | 126810 | 0.0 | 9.813607 | 2 |
GTATAGG | 14560 | 0.0 | 9.788287 | 1 |
GTGTATG | 112675 | 0.0 | 9.784879 | 1 |
ATACCGT | 12500 | 0.0 | 9.624854 | 6 |
TAGACCG | 9255 | 0.0 | 9.597311 | 5 |