Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946244.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28465238 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 9930 | 0.0 | 15.191239 | 5 |
TATACTG | 13470 | 0.0 | 14.268987 | 5 |
GTGTATG | 56950 | 0.0 | 13.097567 | 1 |
GTCGCGC | 1400 | 0.0 | 13.090093 | 8 |
CTATACT | 14255 | 0.0 | 12.95826 | 4 |
CATACAC | 58805 | 0.0 | 12.916607 | 3 |
TCTATAC | 17205 | 0.0 | 12.457519 | 3 |
ATACCGT | 8285 | 0.0 | 12.194422 | 6 |
TATACAG | 12935 | 0.0 | 12.061715 | 5 |
ACACATG | 58345 | 0.0 | 12.008515 | 6 |
TAGTACT | 16175 | 0.0 | 12.001267 | 4 |
GTATATA | 40810 | 0.0 | 11.831392 | 1 |
GTATAGA | 18490 | 0.0 | 11.580559 | 1 |
ACATGAC | 46795 | 0.0 | 11.547941 | 8 |
GTACTAG | 10215 | 0.0 | 11.51746 | 1 |
GATTGAG | 57865 | 0.0 | 11.442041 | 7 |
GTGCTAG | 4485 | 0.0 | 11.437183 | 1 |
CACATGA | 55250 | 0.0 | 11.362728 | 7 |
TCATACA | 65985 | 0.0 | 11.178624 | 2 |
TATACTA | 25310 | 0.0 | 11.177425 | 5 |