FastQCFastQC Report
Tue 15 Nov 2016
SRR1946129.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946129.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30704148
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC379490.12359567834287406No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG112300.014.2736545
CCGTGAG103500.013.9857379
GTCGCGC20500.013.5267768
ACCGTGA123300.012.4265558
GTATAGA205000.012.1586771
GACCGTG72800.012.137857
TATACTG146400.012.1369985
ACATGAC890200.011.7737138
CATACAC1091450.011.6637423
TCTATAC186700.011.6077943
CTATACT156950.011.441824
TAGACCG95050.011.4240585
ACACATG1081350.011.3882786
CACATGA1038400.011.3702557
TACCGTG84150.011.3385417
CATGACA926200.011.2597179
ATACCGT98650.011.2444446
TATACAG133000.010.8150945
GTATTAG170000.010.7059791
TCGCGCG26350.010.7015249