Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945939.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 92125446 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCTC | 123574 | 0.1341366640439385 | TruSeq Adapter, Index 15 (97% over 40bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 217740 | 0.0 | 63.854183 | 4 |
AGAGCGT | 113340 | 0.0 | 60.603676 | 9 |
GATCGGA | 232535 | 0.0 | 60.11719 | 2 |
CGGAAGA | 232340 | 0.0 | 59.848312 | 5 |
ATCGGAA | 237545 | 0.0 | 58.87993 | 3 |
AAGAGCG | 120520 | 0.0 | 57.323025 | 8 |
GAAGAGC | 251670 | 0.0 | 55.178825 | 7 |
AGAGCAC | 127900 | 0.0 | 54.473698 | 9 |
AGATCGG | 274235 | 0.0 | 51.09686 | 1 |
GGAAGAG | 284470 | 0.0 | 49.070107 | 6 |
AAGAGCA | 169480 | 0.0 | 41.601112 | 8 |
GGTCGCC | 89180 | 0.0 | 36.457508 | 44-45 |
CGCCGTA | 89065 | 0.0 | 35.801483 | 46-47 |
TGGTCGC | 93080 | 0.0 | 34.55119 | 42-43 |
GAGCGTC | 101320 | 0.0 | 34.07053 | 10-11 |
GCACACG | 102565 | 0.0 | 33.95624 | 12-13 |
GCCGTAT | 95345 | 0.0 | 33.777496 | 48-49 |
AGCGTCG | 102750 | 0.0 | 33.517334 | 10-11 |
GCGTCGT | 103495 | 0.0 | 33.32834 | 12-13 |
CCGTATC | 96210 | 0.0 | 33.08594 | 48-49 |