Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946179.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34403784 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10725 | 0.0 | 13.398665 | 5 |
GTCGCGC | 1600 | 0.0 | 12.9145775 | 8 |
TATACTG | 16840 | 0.0 | 12.437417 | 5 |
TATGAGC | 14405 | 0.0 | 12.207345 | 94 |
TCTATAC | 20075 | 0.0 | 12.191065 | 3 |
TAGGCTG | 10505 | 0.0 | 11.980533 | 5 |
CTATACT | 17065 | 0.0 | 11.8365755 | 4 |
CTAGTAC | 11535 | 0.0 | 11.524665 | 3 |
GTATAGA | 21520 | 0.0 | 11.370747 | 1 |
CATACAC | 99865 | 0.0 | 11.303162 | 3 |
ACATGAC | 80370 | 0.0 | 10.967758 | 8 |
TAGTACT | 20380 | 0.0 | 10.925418 | 4 |
ACACATG | 101245 | 0.0 | 10.872458 | 6 |
GTACTAG | 13550 | 0.0 | 10.870085 | 1 |
CTGTCCC | 10305 | 0.0 | 10.618374 | 9 |
CATGACA | 82945 | 0.0 | 10.531077 | 9 |
CCGTGAG | 7995 | 0.0 | 10.514402 | 9 |
CACATGA | 96900 | 0.0 | 10.439209 | 7 |
CCTATAC | 12545 | 0.0 | 10.372144 | 3 |
TACCGTG | 8060 | 0.0 | 10.196442 | 7 |