Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946136.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34707510 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACAG | 15165 | 0.0 | 11.346074 | 5 |
TATACCG | 10900 | 0.0 | 11.343215 | 5 |
TATACTG | 17075 | 0.0 | 11.123145 | 5 |
CTATACT | 17685 | 0.0 | 10.768731 | 4 |
CATACAC | 113565 | 0.0 | 10.70776 | 3 |
ACATGAC | 84140 | 0.0 | 10.679146 | 8 |
ACACATG | 111430 | 0.0 | 10.53629 | 6 |
GTATATA | 46920 | 0.0 | 10.334626 | 1 |
CATGACA | 85965 | 0.0 | 10.222829 | 9 |
CACATGA | 108300 | 0.0 | 10.211017 | 7 |
TCTATAC | 20520 | 0.0 | 10.060087 | 3 |
TAGGCTG | 10150 | 0.0 | 10.004483 | 5 |
GTATTAG | 20740 | 0.0 | 9.86449 | 1 |
TCATACA | 123655 | 0.0 | 9.731409 | 2 |
GTATAGA | 22600 | 0.0 | 9.489657 | 1 |
GTCGCGC | 1540 | 0.0 | 9.460021 | 8 |
ATCATAC | 123690 | 0.0 | 9.449001 | 1 |
GTATAGG | 12210 | 0.0 | 9.43723 | 1 |
GTGTATG | 108400 | 0.0 | 9.436786 | 1 |
TATATAC | 47235 | 0.0 | 9.288217 | 3 |