Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946012.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 69394060 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 150055 | 0.21623608706566524 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGGCAT | 14695 | 0.0 | 39.617756 | 1 |
CGGCATT | 19080 | 0.0 | 31.406942 | 2 |
CCGGGAT | 14215 | 0.0 | 27.500767 | 18 |
CGAGATC | 53450 | 0.0 | 27.004854 | 18 |
CCGAGAT | 53965 | 0.0 | 26.741009 | 17 |
AACCGGG | 19770 | 0.0 | 26.318388 | 16 |
GGCATTC | 26860 | 0.0 | 25.863327 | 3 |
GGTCGCC | 15405 | 0.0 | 25.03232 | 53 |
CGCCGTA | 12135 | 0.0 | 23.630068 | 56 |
TATGCCG | 19090 | 0.0 | 23.550678 | 43 |
TGAACCG | 31120 | 0.0 | 23.439384 | 14 |
GAGCGGT | 93480 | 0.0 | 23.356655 | 9 |
GCGGTTC | 92145 | 0.0 | 23.247591 | 11 |
AGCGGTT | 94505 | 0.0 | 22.874155 | 10 |
CGTATGC | 21965 | 0.0 | 22.442987 | 41 |
ACCGGGA | 21300 | 0.0 | 22.309784 | 17 |
GAGACCG | 74260 | 0.0 | 22.131756 | 30 |
GACCGAT | 66285 | 0.0 | 22.102869 | 32 |
CCGATAT | 42245 | 0.0 | 22.046337 | 34 |
TGGTCGC | 17365 | 0.0 | 22.00713 | 52 |