Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946130.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27274798 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 13250 | 0.0 | 12.168971 | 5 |
GAGCGCG | 1605 | 0.0 | 12.007104 | 7 |
ACATGAC | 69085 | 0.0 | 11.769811 | 8 |
CATACAC | 89870 | 0.0 | 11.456101 | 3 |
CTATACT | 13675 | 0.0 | 11.447862 | 4 |
ACACATG | 87075 | 0.0 | 11.41706 | 6 |
CATGACA | 70405 | 0.0 | 11.3814535 | 9 |
CACATGA | 84685 | 0.0 | 11.239525 | 7 |
TCTATAC | 16555 | 0.0 | 11.216966 | 3 |
TATACCG | 9185 | 0.0 | 11.157142 | 5 |
TATACAG | 12355 | 0.0 | 11.14809 | 5 |
TAGACCG | 7115 | 0.0 | 10.96753 | 5 |
ACAGTGC | 4785 | 0.0 | 10.903054 | 8 |
GTATAGA | 17515 | 0.0 | 10.87436 | 1 |
GCGCGCC | 1905 | 0.0 | 10.855119 | 9 |
GTCGCGC | 1300 | 0.0 | 10.846386 | 8 |
GTATATA | 38850 | 0.0 | 10.604053 | 1 |
TAGAGCG | 4735 | 0.0 | 10.523532 | 5 |
GCCGTGC | 2595 | 0.0 | 10.505042 | 8 |
GTACTAG | 11305 | 0.0 | 10.483078 | 1 |