FastQCFastQC Report
Tue 15 Nov 2016
SRR1946030.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946030.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36549610
Sequences flagged as poor quality0
Sequence length99
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACCGTG94500.015.8934987
TATACCG123900.015.6124415
GTCGCGC14100.014.5104998
TATACTG181150.014.4773675
CCGTGAG85300.014.3914029
ATACCGT108950.013.91358956
TCTATAC238200.013.6062943
ACCGTGA110050.013.5209978
CTAGTAC121650.013.301973
CATACAC1137050.013.086373
CTATACT181250.012.90442854
ACACATG1093600.012.6963856
ACATGAC920300.012.6872098
GTATAGA246350.012.5955631
GTGTATG1064800.012.307311
CATGACA957750.012.0308799
GTATATA520100.012.0214481
CACATGA1073950.011.9848017
TAGACCG78950.011.9561875
GATTGAG1016450.011.871357