FastQCFastQC Report
Tue 15 Nov 2016
SRR1946052.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946052.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51394202
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG160900.015.4351025
TATACTG248100.015.2516985
CATACAC1453150.013.7032073
CTATACT261100.013.5590374
TATACAG236850.013.220945
ACATGAC1211150.013.1874948
TCTATAC300800.013.0806893
ACACATG1527950.012.9757096
CTAGGCT136700.012.8803344
CACATGA1469850.012.7509777
CATGACA1260850.012.5708599
TCATACA1594500.012.3941722
GCTGTCC140650.012.2504578
TAGGCTG159250.012.0279235
GTATATA717750.011.9480351
CTGTCCC172300.011.9075429
GTGTATG1378800.011.8872681
ATCATAC1597650.011.8412881
CTAGTAC162100.011.7020723
GTATAGA327200.011.6182841