Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946128.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37664914 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 2035 | 0.0 | 16.629086 | 8 |
TATACTG | 17835 | 0.0 | 12.519786 | 5 |
TCGCGCG | 2955 | 0.0 | 11.769197 | 9 |
TATACCG | 12505 | 0.0 | 11.653447 | 5 |
CTATACT | 18635 | 0.0 | 11.453571 | 4 |
TCTATAC | 22820 | 0.0 | 11.124809 | 3 |
GTATAGA | 23735 | 0.0 | 11.076649 | 1 |
CATACAC | 91720 | 0.0 | 11.045814 | 3 |
ACACATG | 95575 | 0.0 | 10.411525 | 6 |
ACATGAC | 74895 | 0.0 | 10.385932 | 8 |
TATACAG | 15465 | 0.0 | 10.334879 | 5 |
CTAGGCT | 9730 | 0.0 | 10.243243 | 4 |
TAGGCTG | 11460 | 0.0 | 10.213889 | 5 |
GTGCTAG | 5475 | 0.0 | 10.136398 | 1 |
GTACTAG | 14080 | 0.0 | 10.121055 | 1 |
GTATATA | 48540 | 0.0 | 9.99921 | 1 |
GTATAGG | 13900 | 0.0 | 9.981437 | 1 |
CATGACA | 76255 | 0.0 | 9.9720125 | 9 |
CACATGA | 92000 | 0.0 | 9.962607 | 7 |
ATACCGT | 11400 | 0.0 | 9.936878 | 6 |