Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945783.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 62689548 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 31840 | 0.0 | 17.48034 | 3 |
TGCCGTC | 13450 | 0.0 | 17.051497 | 48-49 |
GAGCACA | 30005 | 0.0 | 16.55162 | 9 |
GCCGTCT | 14290 | 0.0 | 15.409895 | 48-49 |
AGTCACG | 16645 | 0.0 | 15.31396 | 28-29 |
TATGCCG | 15345 | 0.0 | 15.2262535 | 46-47 |
AGAGCAC | 32340 | 0.0 | 15.222336 | 8 |
GCACACG | 17025 | 0.0 | 14.971072 | 10-11 |
ATGCCGT | 14865 | 0.0 | 14.660443 | 46-47 |
GATCGGA | 41230 | 0.0 | 13.576622 | 1 |
GTATGCC | 16925 | 0.0 | 13.401753 | 44-45 |
GTCACGA | 18645 | 0.0 | 13.206527 | 28-29 |
CGTATGC | 18205 | 0.0 | 13.050901 | 44-45 |
CGGAAGA | 45760 | 0.0 | 12.339237 | 4 |
ATCGGAA | 49190 | 0.0 | 12.271294 | 2 |
CACACGT | 21525 | 0.0 | 11.900069 | 12-13 |
ACGTCTG | 21440 | 0.0 | 11.487042 | 14-15 |
CGTCTGA | 22750 | 0.0 | 11.23629 | 16-17 |
GAAGAGC | 50225 | 0.0 | 10.829688 | 6 |
CGATCAG | 24415 | 0.0 | 10.7039175 | 32-33 |