Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946008.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43052638 |
Sequences flagged as poor quality | 0 |
Sequence length | 110 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 9635 | 0.0 | 9.22314 | 1 |
GTTCAGC | 28620 | 0.0 | 8.305845 | 3 |
CAGCAGG | 28725 | 0.0 | 8.131039 | 6 |
CGGTTCA | 30450 | 0.0 | 7.98717 | 1 |
CAGGAAT | 32605 | 0.0 | 7.3061256 | 9 |
CCGAGAT | 21635 | 0.0 | 7.245103 | 16-17 |
CGAGATC | 22215 | 0.0 | 7.103689 | 18-19 |
GCAGGAA | 35330 | 0.0 | 6.845847 | 8 |
GGTTCAG | 35915 | 0.0 | 6.763234 | 2 |
TCAGCAG | 38190 | 0.0 | 6.618756 | 5 |
AGCAGGA | 38955 | 0.0 | 6.4353533 | 7 |
GAGACCG | 16805 | 0.0 | 6.4054933 | 50-51 |
TATGCCG | 7655 | 0.0 | 6.354696 | 62-63 |
CGAGACC | 17080 | 0.0 | 6.2563076 | 48-49 |
AATGCCG | 19865 | 0.0 | 5.96954 | 12-13 |
GCATTCC | 15615 | 0.0 | 5.8500376 | 3 |
TGCCGAG | 20360 | 0.0 | 5.811682 | 14-15 |
TTCAGCA | 45100 | 0.0 | 5.719695 | 4 |
CGTATGC | 9485 | 0.0 | 5.707487 | 60-61 |
ATGCCGA | 21700 | 0.0 | 5.608257 | 14-15 |