Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945950.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 88170350 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 47705 | 0.0 | 11.264274 | 4 |
AGAGCGT | 27670 | 0.0 | 10.294505 | 9 |
GGTCGCC | 12050 | 0.0 | 10.150771 | 44-45 |
CCGTACG | 13460 | 0.0 | 9.376595 | 34-35 |
GATCGGA | 62120 | 0.0 | 9.030909 | 2 |
CGGAAGA | 64360 | 0.0 | 8.53858 | 5 |
CGCCGTA | 14195 | 0.0 | 8.514853 | 46-47 |
AAGAGCG | 34520 | 0.0 | 8.401739 | 8 |
ATCGGAA | 68730 | 0.0 | 8.2286825 | 3 |
GCACACG | 17620 | 0.0 | 8.011439 | 12-13 |
GAGCGTC | 17890 | 0.0 | 7.980376 | 10-11 |
TGGTCGC | 15425 | 0.0 | 7.723757 | 42-43 |
AGCGTCG | 19035 | 0.0 | 7.4759464 | 10-11 |
CGTACGT | 17275 | 0.0 | 7.43281 | 34-35 |
TGCCGTC | 12530 | 0.0 | 7.304945 | 50-51 |
GAAGAGC | 80005 | 0.0 | 7.173752 | 7 |
TATGCCG | 13030 | 0.0 | 7.150004 | 48-49 |
GCGTCGT | 20145 | 0.0 | 7.1093235 | 12-13 |
AGAGCAC | 40970 | 0.0 | 6.8606877 | 9 |
AGATCGG | 87730 | 0.0 | 6.724614 | 1 |