FastQCFastQC Report
Tue 15 Nov 2016
SRR1946262.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946262.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30246664
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGA252850.016.5648394
TATACCG93900.016.3184285
ATACCGT74750.015.4019976
TACCGTG72550.015.0268167
TCTATAC156250.014.7109343
GTACTAG129050.014.2904511
GTATAGA173500.014.2898951
CCGTGAG97350.014.2391199
CTATACT125450.013.6389884
GTGTAGA265050.013.24844994
CTAGTAC100700.013.0701323
ACCGTGA112650.013.0565838
GCGTGTA218150.012.7673792-93
CGAGGGG42850.012.72563494
TAGTACT186550.012.7246994
CAGACCG235200.012.47141192-93
GCAGACC247700.012.31649192-93
TATACTG127900.012.3112045
TAGACCG80000.012.2207995
TATAGTG131000.012.1633925