FastQCFastQC Report
Tue 15 Nov 2016
SRR1946149.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946149.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35328330
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG119750.013.5404175
CTATACT185500.011.5027174
TCTATAC215550.011.250993
TATACTG174700.010.9762945
GTATAGA231550.010.9249991
CATACAC987600.010.7218363
ACACATG991150.010.2803326
ACATGAC828150.010.1982368
GTATATA486750.010.036761
GTATAGG134500.09.8584991
CATGACA852950.09.8521269
CACATGA954350.09.8296817
TAGGCTG107600.09.8278545
TACCGTG94050.09.7445647
ATACCGT110500.09.7400326
GTGTATG942950.09.7136911
GTATTAG198150.09.46811
TCATACA1103900.09.4645642
GTATTAT289100.09.2706611
ATCATAC1091300.09.2506421