FastQCFastQC Report
Tue 15 Nov 2016
SRR1945970.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945970.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48080988
Sequences flagged as poor quality0
Sequence length101
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC235400.08.56556594-95
GCCGTCT225400.08.39703294-95
CGTATGC387950.08.21288494-95
GGTCGCC276350.08.15671994-95
ATGCCGT271350.08.0178594-95
TATGCCG305250.07.992051694-95
GTATGCC344950.07.830487794-95
TGGTCGC268700.07.530581594-95
TCGTATG459800.07.28632794-95
CGCCGTA180450.06.851932594-95
GTCGCCG281450.06.83461394-95
CTCGTAT509800.06.42711494-95
GTGGTCG327300.06.13723292-93
TCGCCGT235750.05.90025594-95
GCCGTAT208450.05.87451494-95
CATCTCG683100.05.6876794-95
CCGTATC197650.05.65415594-95
TCTCGTA593300.05.653462492-93
GGTGGTC377800.05.61260892-93
CCGTCTT306950.05.59288994-95