Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946154.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38716128 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12765 | 0.0 | 12.481533 | 5 |
GTATAGA | 25435 | 0.0 | 11.57288 | 1 |
TCTATAC | 23535 | 0.0 | 11.562544 | 3 |
TATACTG | 18600 | 0.0 | 11.446542 | 5 |
CTAGTAC | 11525 | 0.0 | 11.418424 | 3 |
TACCGTG | 9575 | 0.0 | 11.289486 | 7 |
CCGTGAG | 9035 | 0.0 | 10.819826 | 9 |
ATACCGT | 11405 | 0.0 | 10.755535 | 6 |
CTATACT | 19865 | 0.0 | 10.670309 | 4 |
CATACAC | 102305 | 0.0 | 10.488131 | 3 |
GTACTAG | 15165 | 0.0 | 10.449279 | 1 |
ACACATG | 100590 | 0.0 | 10.2323675 | 6 |
ACATGAC | 77875 | 0.0 | 10.229542 | 8 |
TACTAGG | 17440 | 0.0 | 10.079027 | 2 |
ACCGTGA | 12610 | 0.0 | 9.988591 | 8 |
TATACAG | 17040 | 0.0 | 9.984539 | 5 |
CATGACA | 79320 | 0.0 | 9.972098 | 9 |
CTATACC | 18095 | 0.0 | 9.94785 | 4 |
TAGTACT | 22775 | 0.0 | 9.884761 | 4 |
CACATGA | 98175 | 0.0 | 9.832969 | 7 |