FastQCFastQC Report
Tue 15 Nov 2016
SRR1946167.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946167.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20297649
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC90750.014.0946594
TATACTG95750.013.2980565
AGACCGC26950.012.95998794
TATACCG64250.012.5780395
GTATAGA131550.012.0705371
CTAGTAC68150.011.9423913
GTACTAG83100.011.6802921
CTATACT98400.011.3787084
TCTATAC122000.011.1827663
CATACAC560300.010.7893083
ACACATG558250.010.714146
ACATGAC423900.010.5519118
TACCGTG47100.010.3745697
CACATGA543700.010.35273557
CATGACA430200.010.3427779
ATACCGT61050.010.3128046
GTATATA284550.010.2995751
TAGTACT129150.010.2722544
GCTGTCC48150.010.1483328
GTACTAC76200.010.112226