Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946243.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24491266 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 25689 | 0.10489045360088778 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1440 | 0.0 | 15.989729 | 8 |
TCGCGCG | 1735 | 0.0 | 14.083441 | 9 |
CATACAC | 70565 | 0.0 | 13.296097 | 3 |
TATACCG | 8120 | 0.0 | 13.25309 | 5 |
ACATGAC | 59375 | 0.0 | 13.113735 | 8 |
CTATACT | 11745 | 0.0 | 13.047207 | 4 |
CATGACA | 61240 | 0.0 | 12.545486 | 9 |
ACACATG | 70705 | 0.0 | 12.528086 | 6 |
TCTATAC | 13910 | 0.0 | 12.435798 | 3 |
CACATGA | 68855 | 0.0 | 12.304784 | 7 |
TATACTG | 11070 | 0.0 | 12.225948 | 5 |
GTGTATG | 68050 | 0.0 | 12.084467 | 1 |
TATACAG | 10270 | 0.0 | 12.080119 | 5 |
TCATACA | 77200 | 0.0 | 11.885446 | 2 |
CTAGGCT | 6885 | 0.0 | 11.81123 | 4 |
ATCATAC | 76835 | 0.0 | 11.572724 | 1 |
TACCGTG | 6280 | 0.0 | 11.523246 | 7 |
TAGGCTG | 7920 | 0.0 | 11.451697 | 5 |
GTATAGA | 14555 | 0.0 | 11.383955 | 1 |
GATTGAG | 64335 | 0.0 | 11.328652 | 7 |