FastQCFastQC Report
Tue 15 Nov 2016
SRR1946048.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946048.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40982640
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG213900.014.715355
GTCGCGC17850.014.4755048
TATACCG133550.014.2819895
CATACAC1185950.013.2116873
ACATGAC958650.013.0453958
GAGCGCG22700.012.6244717
ACACATG1222900.012.5929136
TATACAG198300.012.5562445
CATGACA993700.012.4765169
CACATGA1179200.012.3305487
GTATAGA258800.011.9900861
TCTATAC251100.011.9184993
GTGTATG1135900.011.9163761
TCATACA1318000.011.8238072
TAGGCTG123700.011.73533255
CTATACT217900.011.7292574
GTATATA592350.011.5802921
ATCATAC1312550.011.566311
GCTGTCC101300.011.5477968
CTAGTAC131700.011.3797773