Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946080.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 69718088 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG | 187718 | 0.26925293763076236 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 91165 | 0.0 | 40.764442 | 9 |
AATGCCG | 76370 | 0.0 | 39.888935 | 24 |
GCGGTTC | 91320 | 0.0 | 39.777187 | 11 |
GAGACCG | 35240 | 0.0 | 39.506413 | 61 |
AGAGCGG | 96055 | 0.0 | 39.242786 | 8 |
CGAGACC | 35550 | 0.0 | 39.0177 | 60 |
AGCGGTT | 95155 | 0.0 | 38.94892 | 10 |
GTTCAGC | 93045 | 0.0 | 38.528954 | 14 |
CAGCAGG | 93665 | 0.0 | 38.00395 | 17 |
CGGTTCA | 99365 | 0.0 | 36.55396 | 12 |
TGCCGAG | 76640 | 0.0 | 36.38156 | 26 |
GGTTCAG | 100815 | 0.0 | 35.919285 | 13 |
GAATGCC | 86985 | 0.0 | 35.659115 | 23 |
ATGCCGA | 80580 | 0.0 | 35.42832 | 25 |
GGAATGC | 89095 | 0.0 | 35.224136 | 22 |
GCAGGAA | 95485 | 0.0 | 34.82964 | 19 |
CAGGAAT | 92575 | 0.0 | 34.776344 | 20 |
CGAGATC | 43760 | 0.0 | 34.73287 | 29 |
AAGAGCG | 112520 | 0.0 | 34.42617 | 7 |
TCGGAAG | 114885 | 0.0 | 33.917755 | 3 |