Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946199.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25558682 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 11925 | 0.0 | 15.17155 | 5 |
CTATACT | 12910 | 0.0 | 15.110019 | 4 |
TATACCG | 8350 | 0.0 | 14.9137535 | 5 |
GTCGCGC | 1150 | 0.0 | 14.7098 | 8 |
TATACAG | 11795 | 0.0 | 13.784967 | 5 |
TCTATAC | 15485 | 0.0 | 13.781225 | 3 |
CATACAC | 58240 | 0.0 | 13.631744 | 3 |
CTAGGCT | 7065 | 0.0 | 13.106816 | 4 |
GTATAGA | 15730 | 0.0 | 13.078361 | 1 |
GTGTATG | 56725 | 0.0 | 12.78047 | 1 |
TAGGCTG | 8160 | 0.0 | 12.669518 | 5 |
ACATGAC | 45810 | 0.0 | 12.62699 | 8 |
GCTGTCC | 6520 | 0.0 | 12.540179 | 8 |
ACACATG | 59800 | 0.0 | 12.486335 | 6 |
TAGTACT | 14260 | 0.0 | 12.3280735 | 4 |
TAATACT | 20225 | 0.0 | 12.271242 | 4 |
TCGCGCG | 1570 | 0.0 | 12.271155 | 9 |
TAGACCG | 5905 | 0.0 | 12.096265 | 5 |
CATGACA | 47230 | 0.0 | 11.978703 | 9 |
GTATATA | 37385 | 0.0 | 11.937449 | 1 |