FastQCFastQC Report
Tue 15 Nov 2016
SRR1946165.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946165.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18781808
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC9550.015.7345278
TATACCG62750.013.4696935
TATACTG88450.012.2103725
ATACCGT53900.012.1096266
TCTATAC116150.011.8421683
TCGCGCG15050.011.5444859
CTATACT92000.011.3813224
TACCGTG52050.011.2770117
CTGTCCC63950.011.2346689
CTAGGCT51600.011.1926034
CGAGGGG21900.011.17577594
GTATAGA117650.010.9579491
GCTGTCC53150.010.8669818
GTACTAG67750.010.6950311
CATACAC461950.010.5686913
GTATATA255550.010.5683371
CTAGTAC60050.010.397323
TAGGCTG60000.010.3305055
CCGTGAG42300.010.3240949
GTATTAT127150.09.9542051