FastQCFastQC Report
Tue 15 Nov 2016
SRR1946257.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946257.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33857752
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG133100.018.080545
CCGTGAG114200.016.828349
TACCGTG111850.016.0904457
GTCGCGC17150.015.8916788
ATACCGT112600.015.7332986
TCTATAC208750.015.4020313
ACCGTGA142100.014.6492568
CTAGTAC137350.013.2785723
GTACTAG182650.013.0590671
GTATAGA227350.012.9953671
TATACTG156350.012.7463975
CTATACC182400.012.6533354
CATACAC1021150.012.0465453
CTATACT160550.012.0038864
TAGACCG90200.011.9850755
TAGTACT260550.011.9610914
ACATGAC803150.011.9120658
GTGTATG958300.011.8560361
ACACATG1037600.011.7025196
AGACCGT91450.011.5615386