Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946166.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40610188 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGTAC | 15355 | 0.0 | 13.432134 | 3 |
TATGAGC | 16590 | 0.0 | 13.349744 | 94 |
TCTATAC | 24170 | 0.0 | 12.576446 | 3 |
TATACCG | 13575 | 0.0 | 12.453793 | 5 |
GTCGCGC | 1850 | 0.0 | 12.438474 | 8 |
TATACTG | 19335 | 0.0 | 12.119797 | 5 |
CTATACT | 20490 | 0.0 | 12.039523 | 4 |
GTACTAG | 21415 | 0.0 | 11.869496 | 1 |
TGTAGGG | 22035 | 0.0 | 11.812127 | 2 |
GACCGTG | 9555 | 0.0 | 11.5990505 | 7 |
CCGTGAG | 13175 | 0.0 | 11.58448 | 9 |
TACCGTG | 10435 | 0.0 | 11.16093 | 7 |
CATACAC | 106975 | 0.0 | 11.150921 | 3 |
GTACTAC | 17300 | 0.0 | 11.021015 | 6 |
ATGTAGG | 26340 | 0.0 | 10.990461 | 1 |
GTATAGA | 26030 | 0.0 | 10.976684 | 1 |
ACCGTGA | 16695 | 0.0 | 10.970361 | 8 |
ACATGAC | 81580 | 0.0 | 10.966146 | 8 |
ATACCGT | 11670 | 0.0 | 10.945604 | 6 |
ACACATG | 104555 | 0.0 | 10.766261 | 6 |