FastQCFastQC Report
Tue 15 Nov 2016
SRR1946256.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946256.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30345258
Sequences flagged as poor quality0
Sequence length100
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTATAC174300.011.7630373
TATACCG99600.011.663085
TATACTG135800.011.2899885
GTATAGA190200.011.1321591
TACCGTG77150.011.0919277
TATACAG120700.011.0269355
CTATACT139900.010.8242734
ATACCGT86800.010.7252386
CATACAC776700.010.5287473
ACACATG782550.010.346246
ACATGAC646900.010.2694488
GTATATA389150.010.1201251
CATGACA663550.010.0048779
CACATGA760850.09.9741537
GTATAGG101900.09.8813671
GTATTAG158600.09.7307891
TAATACT211700.09.4634464
TCATACA864800.09.4282752
GTATTAT210650.09.4260221
GTGTATG768750.09.2665521