Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946053.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20043446 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 6965 | 0.0 | 12.013041 | 5 |
TATACTG | 9635 | 0.0 | 11.708832 | 5 |
ATACCGT | 5790 | 0.0 | 11.687715 | 6 |
CCGTGCG | 1450 | 0.0 | 11.667128 | 9 |
TACCGTG | 5080 | 0.0 | 11.470376 | 7 |
TCTATAC | 12455 | 0.0 | 10.86933 | 3 |
CTAGTAC | 7025 | 0.0 | 10.839836 | 3 |
GTATAGA | 13255 | 0.0 | 10.786295 | 1 |
CTATACT | 10160 | 0.0 | 10.733673 | 4 |
CATACAC | 58640 | 0.0 | 10.525065 | 3 |
CCGTGAG | 5340 | 0.0 | 10.384132 | 9 |
GTACTAC | 7245 | 0.0 | 10.3783245 | 6 |
GTATTAG | 11480 | 0.0 | 10.323741 | 1 |
TAGTACT | 13655 | 0.0 | 10.1895275 | 4 |
ACATGAC | 48165 | 0.0 | 10.117554 | 8 |
GTATATA | 32080 | 0.0 | 10.100975 | 1 |
ACACATG | 59870 | 0.0 | 10.031532 | 6 |
TAGGCTG | 6065 | 0.0 | 9.920492 | 5 |
CACATGA | 58195 | 0.0 | 9.827083 | 7 |
CTGAGCG | 7575 | 0.0 | 9.804006 | 94 |