Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946043.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35984360 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGACCGG | 15525 | 0.0 | 29.73327 | 94 |
TGAGCGG | 32695 | 0.0 | 26.746586 | 94 |
CTGAGCG | 43185 | 0.0 | 26.630522 | 94 |
TGATGGC | 40260 | 0.0 | 23.408648 | 94 |
GTGTAGA | 22405 | 0.0 | 18.553108 | 94 |
TCTGAGC | 64525 | 0.0 | 18.425976 | 94 |
GGCAGAC | 14070 | 0.0 | 18.041725 | 90-91 |
GCGTGTA | 12590 | 0.0 | 17.983555 | 92-93 |
CTGATGG | 60350 | 0.0 | 17.852528 | 94 |
AGGCGTG | 12935 | 0.0 | 17.671383 | 90-91 |
GGCGTGT | 13635 | 0.0 | 17.210293 | 90-91 |
GTCGCGC | 1615 | 0.0 | 17.094538 | 8 |
CTCTGAG | 78100 | 0.0 | 15.895308 | 94 |
TGGCGCG | 15275 | 0.0 | 15.836465 | 78-79 |
CAGACCG | 16105 | 0.0 | 15.817687 | 92-93 |
CGTGTAG | 15020 | 0.0 | 15.682051 | 92-93 |
GCAGACC | 16060 | 0.0 | 15.570427 | 92-93 |
GGCTGGC | 16490 | 0.0 | 15.363361 | 82-83 |
GCTGGCA | 17175 | 0.0 | 14.982159 | 82-83 |
TATACCG | 11505 | 0.0 | 14.975036 | 5 |