FastQCFastQC Report
Wed 16 Nov 2016
SRR1945831.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945831.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18355742
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGCG9450.019.3975727
TATACTG91700.017.0705015
TATACCG57850.016.4141865
CTATACT100000.015.9860154
CCGTGAG42650.015.3176649
TCTATAC121450.014.9442723
ATACCGT57200.013.9695246
CCGTGCG10100.013.96036159
GCCGTGC19950.013.89998158
GTGTATG490150.013.8290471
CATACAC512250.013.5759813
ACATGAC377650.013.5034688
CATGACA381250.013.3510499
TAATACT165700.013.1093384
ACACATG507300.012.9159586
ACCGTGA55000.012.7329398
GCGCGCC12200.012.7130839
CACATGA484450.012.6127267
GACCGTG24800.012.5085457
TCATACA560850.012.1759242