Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946188.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27129596 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10210 | 0.0 | 15.836963 | 5 |
TACCGTG | 8405 | 0.0 | 14.367852 | 7 |
TATGAGC | 12735 | 0.0 | 14.310616 | 94 |
ATACCGT | 9155 | 0.0 | 13.857734 | 6 |
GTCGCGC | 1480 | 0.0 | 13.651435 | 8 |
TCTATAC | 17635 | 0.0 | 12.98085 | 3 |
CCGTGAG | 8435 | 0.0 | 12.756336 | 9 |
CTAGTAC | 9765 | 0.0 | 12.659984 | 3 |
GTATAGA | 17845 | 0.0 | 12.387342 | 1 |
TATACTG | 12335 | 0.0 | 12.346535 | 5 |
TAGGCTG | 8455 | 0.0 | 12.063832 | 5 |
ACCGTGA | 10725 | 0.0 | 11.741107 | 8 |
CTATACT | 13600 | 0.0 | 11.474452 | 4 |
CATACAC | 77860 | 0.0 | 11.36804 | 3 |
GCTGTCC | 7375 | 0.0 | 11.27672 | 8 |
GTATAGG | 9930 | 0.0 | 11.225247 | 1 |
CTAGGCT | 7710 | 0.0 | 11.217504 | 4 |
GTACTAC | 10985 | 0.0 | 11.16419 | 6 |
ACATGAC | 64120 | 0.0 | 11.013796 | 8 |
CTATACC | 14490 | 0.0 | 10.964305 | 4 |