FastQCFastQC Report
Tue 15 Nov 2016
SRR1946223.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946223.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22286928
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC226650.10169638453536531No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG87600.019.0460685
ATACCGT78150.018.46256
TACCGTG71400.018.1673667
CCGTGAG65550.017.9245579
TCTATAC151000.015.9672923
CTATACC120150.015.8812024
ACCGTGA82750.015.277968
GTATAGA157250.015.1758041
CATACAC663100.013.8779243
CTAGTAC68150.013.8618463
GTACTAG89850.013.5156221
TATACTG105550.013.4916635
ACATGAC555050.013.3191878
CTATACT107350.013.177884
ACACATG698950.013.1187446
GTATAGG72800.013.0603371
CACATGA683300.012.9652557
CATGACA564200.012.9282499
GTCGCGC7401.8189894E-1212.7022128
GTGTATG636850.012.57191851