FastQCFastQC Report
Tue 15 Nov 2016
SRR1946095.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946095.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22289512
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA31550.020.63207666
CGGCATT44400.020.2549721
TATGCCG30300.019.8711363
GGTCGCC33100.019.67078663
GCCGTAT36050.018.33283667
CCTGCTG64250.016.381918
TGCCGTC36900.016.31283865
CGTATGC36750.016.20721661
ATGCCGT37200.016.18299164
TGGTCGC41100.016.02639462
GCCGTCT39300.015.67290566
GTATGCC40100.015.5523362
CCGTATC43800.015.16884768
GCTGAAC70800.015.05406911
GGCATTC71800.014.7565712
GCATTCC75850.014.5216963
TGAACCG78450.013.62940913
ATTCCTG80000.013.5478895
CGAGATC100800.013.11181218
CCGAGAT102150.012.83666717