FastQCFastQC Report
Tue 15 Nov 2016
SRR1946006.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946006.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38939818
Sequences flagged as poor quality0
Sequence length76
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5684141.4597243366674184No Hit
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG874400.22455164017458942Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG115000.034.26985563
CGTATGC126750.032.43355661
TGCCGTC120950.031.2371265
CGAGATC312800.030.9591518
GTATGCC131800.030.6391562
ATGCCGT122950.030.1233364
CCGAGAT318250.030.00059317
GCCGTCT124250.027.92703866
GAGACCG258450.027.03227850
CGGCATT99100.026.7050631
CGAGACC267400.026.38624249
TCGTATG174550.024.91209660
GACCGAT242950.024.9018352
AGACCGA269900.024.47430651
GAGATCG436200.022.22442619
CTCGTAT122650.020.7386759
CCGATAT124850.020.0970854
GAGCGGT370250.019.8356329
CCGAGAC360600.019.80831148
AGAGCGG409100.019.72944328