FastQCFastQC Report
Tue 15 Nov 2016
SRR1946116.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946116.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25093234
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG122200.012.6536385
TATACCG81350.011.90146355
GTATAGA171200.011.2315391
GAGCGCG17850.010.5314947
CATACAC709100.010.361423
CTATACT136200.010.2850424
TCTATAC159100.010.2819813
ACACATG686000.010.1530136
GTATAGG92850.010.0760631
TATACAG116550.09.9603695
ACATGAC501550.09.951238
ATACTGT125300.09.7144796
CACATGA657800.09.6737097
GTATTAT189950.09.6526161
AGCGCGC28350.09.6148268
CATGACA520800.09.5292279
GTATATA359000.09.4812111
TAGTACT148250.09.4490584
GTGTATG669650.09.4286141
ATACCGT72800.09.4252376