Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946025.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 42896182 |
Sequences flagged as poor quality | 0 |
Sequence length | 99 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 2005 | 0.0 | 16.930063 | 8 |
TATACTG | 21495 | 0.0 | 13.715193 | 5 |
CTAGTAC | 13285 | 0.0 | 13.580641 | 3 |
CTATACT | 21645 | 0.0 | 12.803798 | 4 |
TATACCG | 13500 | 0.0 | 12.778806 | 5 |
CATACAC | 129700 | 0.0 | 12.766801 | 3 |
TCGCGCG | 2785 | 0.0 | 12.689296 | 9 |
ACATGAC | 108625 | 0.0 | 12.576857 | 8 |
TCTATAC | 25730 | 0.0 | 12.560159 | 3 |
TATACAG | 19180 | 0.0 | 12.461337 | 5 |
TACCGTG | 10390 | 0.0 | 12.4416895 | 7 |
ACACATG | 128425 | 0.0 | 12.328711 | 6 |
GTATAGA | 27040 | 0.0 | 12.060379 | 1 |
TAGACCG | 10280 | 0.0 | 12.032022 | 5 |
CATGACA | 113205 | 0.0 | 11.829761 | 9 |
CCGTGCG | 2715 | 0.0 | 11.817575 | 9 |
GTGTATG | 120995 | 0.0 | 11.761473 | 1 |
CACATGA | 126650 | 0.0 | 11.723137 | 7 |
GTATATA | 60730 | 0.0 | 11.704954 | 1 |
TCATACA | 141515 | 0.0 | 11.524876 | 2 |