FastQCFastQC Report
Tue 15 Nov 2016
SRR1946217.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946217.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36556206
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC387960.10612698702923383No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG169900.014.52619655
CTATACT184200.014.4958644
CATACAC1019050.013.7884043
ACATGAC889050.013.5827478
TATACCG123750.013.561545
ACACATG1063800.013.3052516
CATGACA912100.013.1405339
CACATGA1041100.013.0534047
GTGTATG958650.012.9849521
TCTATAC217700.012.8697893
GTATAGA226600.012.2490581
TCATACA1133150.012.1693742
ATCATAC1099250.011.9318251
TAGTACT180100.011.8763524
GTATAGG128350.011.839061
TAATACT273000.011.8298564
GTATATA490800.011.8186831
GATTGAG939150.011.74251657
GTATTAG203200.011.6685641
TATACAG159700.011.6272815