FastQCFastQC Report
Tue 15 Nov 2016
SRR1946037.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946037.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54180260
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG177750.015.0020955
GTCGCGC23150.014.1962848
TATACTG277600.014.1553045
CTATACT287400.013.8542824
TCTATAC357100.013.7799093
CTAGTAC183300.013.6789823
CATACAC1229000.013.0356323
TATACAG256950.012.7349545
ATACCGT161600.012.5505646
TAGTACT349700.012.2857144
GTATAGA372450.012.23755551
TACCGTG136650.012.1968147
TCGCGCG30100.012.1662239
ACACATG1231800.011.9676896
GTACTAG225450.011.9216591
ACATGAC1027100.011.9166988
TAGGCTG162350.011.8850975
GTATAGG198950.011.7382511
GTGTATG1171850.011.7365821
GTATATA820500.011.6483191