Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946213.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 16449222 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 855 | 0.0 | 21.437693 | 8 |
ATACCGT | 6055 | 0.0 | 20.336054 | 6 |
TATACCG | 7115 | 0.0 | 19.882507 | 5 |
CCGTGAG | 5005 | 0.0 | 19.81335 | 9 |
TACCGTG | 6105 | 0.0 | 17.860018 | 7 |
ACCGTGA | 6655 | 0.0 | 17.372671 | 8 |
TCTATAC | 11270 | 0.0 | 17.348404 | 3 |
TCGCGCG | 1335 | 0.0 | 16.54612 | 9 |
TATACTG | 7715 | 0.0 | 15.77769 | 5 |
GTATAGA | 11655 | 0.0 | 14.982099 | 1 |
CTATACT | 8005 | 0.0 | 14.85384 | 4 |
CATACAC | 48395 | 0.0 | 14.518803 | 3 |
ACATGAC | 41655 | 0.0 | 14.385422 | 8 |
ACACATG | 48425 | 0.0 | 14.004779 | 6 |
CTATACC | 9390 | 0.0 | 13.914217 | 4 |
CACATGA | 46780 | 0.0 | 13.773895 | 7 |
CATGACA | 43080 | 0.0 | 13.713209 | 9 |
GTGTATG | 45750 | 0.0 | 13.363772 | 1 |
TCATACA | 53460 | 0.0 | 13.037977 | 2 |
CTAGTAC | 6225 | 0.0 | 12.910612 | 3 |