FastQCFastQC Report
Tue 15 Nov 2016
SRR1946199.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946199.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25558682
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG119250.015.171555
CTATACT129100.015.1100194
TATACCG83500.014.91375355
GTCGCGC11500.014.70988
TATACAG117950.013.7849675
TCTATAC154850.013.7812253
CATACAC582400.013.6317443
CTAGGCT70650.013.1068164
GTATAGA157300.013.0783611
GTGTATG567250.012.780471
TAGGCTG81600.012.6695185
ACATGAC458100.012.626998
GCTGTCC65200.012.5401798
ACACATG598000.012.4863356
TAGTACT142600.012.32807354
TAATACT202250.012.2712424
TCGCGCG15700.012.2711559
TAGACCG59050.012.0962655
CATGACA472300.011.9787039
GTATATA373850.011.9374491