FastQCFastQC Report
Tue 15 Nov 2016
SRR1946204.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946204.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30246914
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG99550.014.0274215
ATACCGT85100.013.5321056
GTCGCGC11750.012.800688
TACCGTG79300.012.6845747
TCTATAC180950.012.0567033
CCGTGAG61350.011.4921499
TATACTG143100.011.0726855
CTATACT154200.011.0688054
ACATGAC784500.010.904348
TCGCGCG13950.010.7820239
CATACAC953450.010.7159573
ACACATG975000.010.5914226
CATGACA809750.010.4715299
GTACTAG109950.010.3587731
CACATGA951900.010.3301277
CTAGTAC88500.010.3068893
CTATACC134100.010.2734754
ACCGTGA86600.010.2580518
TAGGCTG76050.010.201115
GTATATA480050.010.1667111