FastQCFastQC Report
Tue 15 Nov 2016
SRR1946156.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946156.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38336294
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC25850.014.1813078
GCTGTCC109200.012.7825068
TATACCG133200.012.7729635
TAGGCTG126600.012.5478785
CTAGGCT114650.012.5029684
TATACTG168000.012.4491025
CTATACT184250.012.3714774
CTGTCCC137500.011.4163159
TCTATAC206150.011.1940043
CATACAC1346350.011.1078373
ACATGAC937650.011.0422088
ACACATG1317900.010.9303256
CGCCTAG115750.010.846681
TAGACAG131900.010.7252885
CACATGA1276550.010.7026027
TCGCGCG34700.010.6999039
CATGACA975400.010.5136669
GTATATA502750.010.5035061
TATACAG158700.010.3652185
TCATACA1456850.010.2008432