FastQCFastQC Report
Tue 15 Nov 2016
SRR1946012.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946012.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69394060
Sequences flagged as poor quality0
Sequence length76
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG1500550.21623608706566524Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGCAT146950.039.6177561
CGGCATT190800.031.4069422
CCGGGAT142150.027.50076718
CGAGATC534500.027.00485418
CCGAGAT539650.026.74100917
AACCGGG197700.026.31838816
GGCATTC268600.025.8633273
GGTCGCC154050.025.0323253
CGCCGTA121350.023.63006856
TATGCCG190900.023.55067843
TGAACCG311200.023.43938414
GAGCGGT934800.023.3566559
GCGGTTC921450.023.24759111
AGCGGTT945050.022.87415510
CGTATGC219650.022.44298741
ACCGGGA213000.022.30978417
GAGACCG742600.022.13175630
GACCGAT662850.022.10286932
CCGATAT422450.022.04633734
TGGTCGC173650.022.0071352