FastQCFastQC Report
Tue 15 Nov 2016
SRR1946094.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946094.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144226906
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG3711260.25732091902463744Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGACCG676850.037.9027761
CGAGACC692450.037.39671760
ACCGCGC166300.036.8145516
AATGCCG1380200.036.29626524
GAGCGGT1634250.035.9315649
CGGCATT449150.035.6317251
AGCGGTT1672400.035.10166510
GCGGTTC1675550.034.6475311
AGAGCGG1743600.034.0256588
GTTCAGC1680700.033.9469914
CGAGATC913750.033.76201629
CAGCAGG1687750.033.4384917
TGCCGAG1414300.033.00121726
ATGCCGA1454050.032.91797325
CGGTTCA1803850.032.18777512
GAATGCC1594200.031.95457623
GGAATGC1647250.031.2652222
GGTTCAG1871200.031.05340613
AGACCGA770100.030.78515862
CAGGAAT1713700.030.71551320