FastQCFastQC Report
Tue 15 Nov 2016
SRR1945972.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945972.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43147404
Sequences flagged as poor quality0
Sequence length110
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT97800.016.1050641
ACCCTCG228350.013.483374
GCTCGAC192050.011.9363616
GGAACCC290600.010.9471371
CAAAGCC966600.010.5678322
CGAAGTC175650.010.34034258
AACCCTC308700.010.2922593
AGCCGAA191300.09.5757175
CCCTCGA337550.09.5659815
TGCTCGA255850.09.4654975
ACAAAGC1162550.09.3591281
ATGCTCG258000.09.2863244
AATGCTC282700.08.9874123
CGAGATC319800.08.73125118-19
AAGCCGA211800.08.526724
GAGCGTG113000.08.494331104
AAGCCAA1025000.08.4258754
CGGCTAC124800.08.394505526-27
CTCGACC726150.08.1166237
AAAGCCA1094050.07.97915463