Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946175.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41556118 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 14935 | 0.0 | 15.282693 | 5 |
CCGTGAG | 12525 | 0.0 | 13.761542 | 9 |
TACCGTG | 12085 | 0.0 | 13.601819 | 7 |
ACCGTGA | 15840 | 0.0 | 13.431367 | 8 |
CTAGTAC | 13505 | 0.0 | 13.044848 | 3 |
TATACTG | 20525 | 0.0 | 12.996727 | 5 |
TCTATAC | 28745 | 0.0 | 12.764125 | 3 |
ATACCGT | 14100 | 0.0 | 12.690504 | 6 |
CTATACT | 22025 | 0.0 | 12.328762 | 4 |
GTACTAC | 16465 | 0.0 | 11.438148 | 6 |
TAGTACT | 27000 | 0.0 | 11.414257 | 4 |
TAGACCG | 9860 | 0.0 | 11.383867 | 5 |
GTATAGA | 29225 | 0.0 | 11.270654 | 1 |
CATACAC | 99255 | 0.0 | 11.208091 | 3 |
CTATACC | 22395 | 0.0 | 11.202056 | 4 |
GTATTAG | 25395 | 0.0 | 11.006362 | 1 |
GTATAGG | 14340 | 0.0 | 10.894178 | 1 |
GTACTAG | 17415 | 0.0 | 10.861959 | 1 |
ACATGAC | 84350 | 0.0 | 10.796175 | 8 |
CCGTGCG | 2665 | 0.0 | 10.7500725 | 9 |