FastQCFastQC Report
Tue 15 Nov 2016
SRR1946226.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946226.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24981346
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG88250.014.3792545
TACCGTG69000.013.6909187
CCGTGAG66950.013.5485339
CTATACT124050.013.5256694
GTATAGA172950.013.4713831
CTAGTAC85200.013.2942783
TATACTG123650.012.9992795
TCTATAC160500.012.9722713
ATACCGT80750.012.9209986
ACCGTGA87400.012.42184458
CATACAC661200.012.1762023
ACATGAC533300.012.1087898
CATGACA542250.011.8049229
ACACATG673450.011.5987516
GTACTAG106900.011.5799221
CACATGA658250.011.3168087
ACTGTGC36550.011.3156858
TATACAG112150.011.2730225
TAGTACT171250.011.1973924
GTGTATG630800.011.1253451