Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945989.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 49911668 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 25515 | 0.0 | 8.582734 | 94-95 |
GCCGTCT | 24345 | 0.0 | 8.536175 | 94-95 |
ATGCCGT | 28820 | 0.0 | 7.870748 | 94-95 |
CGTATGC | 40965 | 0.0 | 7.737111 | 94-95 |
TATGCCG | 32400 | 0.0 | 7.5294623 | 94-95 |
GGTCGCC | 31765 | 0.0 | 7.522788 | 94-95 |
GTATGCC | 36810 | 0.0 | 7.4025345 | 94-95 |
TCGTATG | 49455 | 0.0 | 7.0483165 | 94-95 |
GTCGCCG | 31740 | 0.0 | 6.951887 | 94-95 |
TGGTCGC | 30105 | 0.0 | 6.7686777 | 94-95 |
CGCCGTA | 21580 | 0.0 | 6.577858 | 94-95 |
CTCGTAT | 51735 | 0.0 | 6.2643065 | 94-95 |
TCGCCGT | 26855 | 0.0 | 5.976408 | 94-95 |
CCGTCTT | 32740 | 0.0 | 5.882581 | 94-95 |
GTGGTCG | 36530 | 0.0 | 5.798046 | 92-93 |
CCGTATC | 22820 | 0.0 | 5.78281 | 94-95 |
GCCGTAT | 24195 | 0.0 | 5.7489944 | 94-95 |
TCTCGTA | 60355 | 0.0 | 5.525837 | 92-93 |
CTCGGTG | 51790 | 0.0 | 5.5001245 | 94-95 |
CTGACCA | 122230 | 0.0 | 5.2367144 | 94-95 |