FastQCFastQC Report
Tue 15 Nov 2016
SRR1946017.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946017.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87303692
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC95600.06.54726944-45
TCGGAAG427000.06.38071164
AGAGCGT241150.05.75407559
TGCCGTC119750.05.438690750-51
GCCGTCT127350.05.194837652-53
CGCCGTA112400.05.13387846-47
TATGCCG117700.05.05823248-49
GATCGGA568250.05.0348942