FastQCFastQC Report
Tue 15 Nov 2016
SRR1946201.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946201.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24275868
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG78500.015.3249645
TATACTG119250.015.092795
CTATACT125950.014.816084
CATACAC455600.013.4844383
TCTATAC148950.013.3803153
ACATGAC363950.012.6655818
ACACATG469750.012.5640756
GTATAGG83700.012.3704941
GTATAGA159100.012.2467251
CATGACA369400.012.1607079
GTATATA336350.012.1035991
GTGTATG436950.012.0312641
CACATGA461800.011.935617
TATACAG106300.011.8476075
TAATACT189600.011.6024184
TAGACTG54350.011.5860235
CTAGGCT60050.011.584834
TACCGTG57700.011.5641327
TCATACA529050.011.3926892
TAGTACT126250.011.3183524