FastQCFastQC Report
Tue 15 Nov 2016
SRR1946266.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946266.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43831440
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG134700.017.725475
GTATAGA225200.014.5388561
TACCGTG102400.014.3171527
ATACCGT104200.013.8445266
AGACCGT333350.013.79140294
TCTATAC211150.013.7571123
CTATACT172500.013.51524
CATACAC1031250.013.2316163
TATACTG172650.013.0397895
ACACATG1028550.012.7509326
ACATGAC797850.012.5623718
TATACAG156250.012.3930675
GTATATA497550.012.3763421
CCGTGCA199450.012.25573394
GTACTAG126050.012.2410971
GCTGTCC89600.012.1669578
CACATGA991100.012.0994387
GTGTATG1009650.011.9510441
CATGACA851000.011.7939789
CTAGGCT100800.011.7042354