FastQCFastQC Report
Tue 15 Nov 2016
SRR1946192.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946192.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46561058
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC34250.014.8157958
TATGAGC203950.014.24690694
TATACTG221050.012.2271595
CTATACT232950.012.0665074
CTAGGCT147300.011.9666234
GCTGTCC147050.011.9180598
TAGGCTG166200.011.6240925
CATACAC1335100.011.3157333
GTATATA627700.011.2385891
TCGCGCG44950.011.1844939
AGGTCGC54850.011.0505936
ACATGAC1045350.011.0164938
TATACAG210600.011.0036515
ACACATG1312100.010.950736
CTGTCCC182050.010.8655999
GTATAGA278700.010.73231
TCTATAC271100.010.5940563
CACATGA1248650.010.5102157
TCATACA1446400.010.3638222
TAGACTG110700.010.2758085