FastQCFastQC Report
Tue 15 Nov 2016
SRR1946044.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946044.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35577570
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG134400.018.0098675
GTCGCGC16400.017.1200718
ATACCGT122250.016.0792246
TACCGTG110450.015.9748467
TCTATAC231600.015.1417653
CCGTGAG98050.015.0325199
TATACTG179750.014.5339785
CTAGTAC132400.014.1097123
CTATACT185850.013.905814
ACCGTGA129600.013.4318588
TCGCGCG21100.013.3056979
CATACAC830100.012.7527363
GTATAGA268250.012.6763751
GTACTAC145600.012.5362596
TAGTACT256350.012.1635614
GTACTAG169450.012.162121
ACACATG818500.011.9392346
GTATAGG130300.011.8982131
CTATACC199600.011.8219684
ACATGAC663850.011.8000448