Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946160.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28156280 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGAGC | 12970 | 0.0 | 16.37376 | 94 |
TATACCG | 10240 | 0.0 | 13.440762 | 5 |
CTAGTAC | 9880 | 0.0 | 13.317549 | 3 |
TATACTG | 13140 | 0.0 | 13.262787 | 5 |
CCGTGAG | 7530 | 0.0 | 12.913224 | 9 |
GTATAGA | 19000 | 0.0 | 12.239213 | 1 |
ATACCGT | 8895 | 0.0 | 12.093411 | 6 |
ACCGTGA | 10395 | 0.0 | 12.020331 | 8 |
GTCGCGC | 1690 | 0.0 | 11.952014 | 8 |
TAGACCG | 7020 | 0.0 | 11.710007 | 5 |
TACCGTG | 8495 | 0.0 | 11.667516 | 7 |
TCTATAC | 18610 | 0.0 | 11.489159 | 3 |
ACATGAC | 67830 | 0.0 | 11.1912565 | 8 |
CATACAC | 86140 | 0.0 | 11.117894 | 3 |
AGACCGT | 6155 | 0.0 | 11.066219 | 6 |
CTATACT | 14855 | 0.0 | 11.0099535 | 4 |
TAGGCTG | 8820 | 0.0 | 10.971219 | 5 |
ACACATG | 83915 | 0.0 | 10.8373995 | 6 |
CATGACA | 69630 | 0.0 | 10.827744 | 9 |
TAGTACT | 19160 | 0.0 | 10.792848 | 4 |