FastQCFastQC Report
Tue 15 Nov 2016
SRR1946107.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946107.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31766190
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG105750.014.2690495
TATACTG150200.012.2370625
TCTATAC183800.012.2004943
CTATACT155750.011.8924884
ATACCGT89350.011.8890736
GTATAGA201550.011.8534881
GTATAGG110150.011.7839211
CATACAC897600.011.7738373
TACCGTG75950.011.5728537
GTATATA437400.011.3755451
ACACATG911500.011.1231456
ACATGAC723450.011.0704638
GTACTAG109150.010.9439791
TAGGCTG91400.010.749065
CACATGA870150.010.6251947
TCATACA986400.010.5805242
CATGACA749350.010.5617729
TATACAG141850.010.4719645
CTATACC148100.010.3482544
CCGTGAG69950.010.3469529