Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946200.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30134558 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1815 | 0.0 | 15.015884 | 8 |
TATACTG | 14650 | 0.0 | 14.595153 | 5 |
TATACCG | 9635 | 0.0 | 13.949196 | 5 |
CTATACT | 14670 | 0.0 | 13.649363 | 4 |
CATACAC | 62290 | 0.0 | 13.492178 | 3 |
TCTATAC | 18350 | 0.0 | 13.268644 | 3 |
ACATGAC | 49510 | 0.0 | 12.974038 | 8 |
GTATAGA | 18865 | 0.0 | 12.872892 | 1 |
ACACATG | 64730 | 0.0 | 12.602394 | 6 |
GTGTATG | 59860 | 0.0 | 12.288688 | 1 |
TAGTACT | 16235 | 0.0 | 12.275704 | 4 |
CATGACA | 50925 | 0.0 | 12.235208 | 9 |
CACATGA | 62175 | 0.0 | 12.077122 | 7 |
GTATATA | 42540 | 0.0 | 11.948393 | 1 |
CTAGTAC | 9470 | 0.0 | 11.763357 | 3 |
ATACCGT | 8295 | 0.0 | 11.726352 | 6 |
TCATACA | 70345 | 0.0 | 11.6625 | 2 |
TATACAG | 12845 | 0.0 | 11.633968 | 5 |
TATACTA | 26000 | 0.0 | 11.350661 | 5 |
TCGCGCG | 2365 | 0.0 | 11.325112 | 9 |