FastQCFastQC Report
Tue 15 Nov 2016
SRR1946074.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946074.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62440766
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT95100.07.0587081
CGAGATC211150.05.680358418
AATGCCG122650.05.67227113
GAGCGGT132100.05.296227529
CGTATGC71250.05.213861
GAGACCG131100.05.208266750
TGCCGAG149900.05.202141315
TATGCCG59300.05.200735663
GAGCGTC82250.05.18875729
TCGGAAG229800.05.174023623
GAGATCG236350.05.163434519
AAGAGCG231100.05.130509427
CGAGACC135950.05.07403249
AGAGCGG148000.05.033897428