FastQCFastQC Report
Tue 15 Nov 2016
SRR1946127.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946127.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23683734
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG76850.013.2735495
CCGTGAG60150.012.501559
GCCGTGC26800.012.2762758
TATACTG121550.011.9888625
ACCGTGA77100.011.5825068
TCTATAC153900.011.4856423
GTATAGA167400.011.29320051
TACCGTG64150.011.0638337
GTATTAG146750.011.0236831
CATACAC628150.010.8969293
TATACAG109850.010.826595
CTATACT124700.010.8198574
ATACCGT74750.010.7526346
ACATGAC504700.010.6349688
CATGACA516700.010.3874079
CTAGTAC80600.010.3822383
ACACATG620200.010.3753236
GAGCGCG15600.010.2442397
CACATGA607800.010.1306187
GTATATA347900.010.1245061