FastQCFastQC Report
Wed 16 Nov 2016
SRR1945860.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945860.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72945366
Sequences flagged as poor quality0
Sequence length101
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC552400.09.41856394-95
TATGCCG682150.09.38155594-95
CGCCGTA589250.09.31717394-95
ATGCCGT620800.09.27972394-95
GCCGTCT504450.09.25938594-95
GTATGCC785550.09.12912394-95
GCCGTAT571250.09.09945894-95
CGTATGC868950.09.06455894-95
GGTCGCC839900.08.84654994-95
CCGTATC533250.08.30062994-95
GTCGCCG851500.08.246366594-95
TGGTCGC921300.07.992757394-95
TCGTATG1029550.07.918123794-95
CGTATCA523750.07.88445194-95
TCGCCGT791300.07.490302694-95
CCGTCTT587850.07.190339694-95
CTCGTAT1066700.07.14884192-93
GTGGTCG1099650.06.7683492-93
GGTGGTC1173550.06.336057792-93
TCGGTGG1386050.06.316698694-95