Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946180.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35611768 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 11850 | 0.0 | 13.475128 | 5 |
TATACTG | 18075 | 0.0 | 12.056244 | 5 |
TCTATAC | 22590 | 0.0 | 11.375389 | 3 |
CTATACT | 19370 | 0.0 | 11.205046 | 4 |
CATACAC | 98165 | 0.0 | 11.1887865 | 3 |
CCGTGAG | 9865 | 0.0 | 11.045202 | 9 |
ACATGAC | 79230 | 0.0 | 10.81225 | 8 |
ACACATG | 97240 | 0.0 | 10.760888 | 6 |
GTATTAG | 20945 | 0.0 | 10.694409 | 1 |
CTAGTAC | 12655 | 0.0 | 10.691176 | 3 |
CATGACA | 80420 | 0.0 | 10.588062 | 9 |
TATGAGC | 15790 | 0.0 | 10.56865 | 94 |
ATACCGT | 11500 | 0.0 | 10.454903 | 6 |
TACCGTG | 9550 | 0.0 | 10.425867 | 7 |
CACATGA | 94095 | 0.0 | 10.396866 | 7 |
GTATAGG | 13290 | 0.0 | 10.374636 | 1 |
GTGTATG | 91925 | 0.0 | 10.345772 | 1 |
ACCGTGA | 12725 | 0.0 | 10.334302 | 8 |
GTACTAG | 17215 | 0.0 | 10.332728 | 1 |
GTATAGA | 24475 | 0.0 | 10.324803 | 1 |