Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946222.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38922984 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 14455 | 0.0 | 18.62797 | 5 |
TACCGTG | 11870 | 0.0 | 18.05151 | 7 |
CCGTGAG | 12065 | 0.0 | 16.552275 | 9 |
ATACCGT | 13910 | 0.0 | 16.1476 | 6 |
ACCGTGA | 14990 | 0.0 | 15.798892 | 8 |
TCTATAC | 25600 | 0.0 | 15.148053 | 3 |
TATACTG | 19130 | 0.0 | 14.517824 | 5 |
GTATAGA | 28365 | 0.0 | 14.402325 | 1 |
CTATACC | 20795 | 0.0 | 14.037039 | 4 |
CTAGTAC | 13765 | 0.0 | 14.000724 | 3 |
CATACAC | 100505 | 0.0 | 13.647101 | 3 |
ACATGAC | 88175 | 0.0 | 13.407966 | 8 |
CTATACT | 18925 | 0.0 | 13.337708 | 4 |
CATGACA | 89760 | 0.0 | 13.035046 | 9 |
ACACATG | 106340 | 0.0 | 13.004715 | 6 |
TAGTACT | 28460 | 0.0 | 12.651345 | 4 |
CACATGA | 104415 | 0.0 | 12.618698 | 7 |
TATACAG | 17365 | 0.0 | 12.583666 | 5 |
GTATAGG | 13495 | 0.0 | 12.450621 | 1 |
GTGTATG | 95820 | 0.0 | 12.137026 | 1 |