Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945930.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 59663980 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 36 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATGAG | 18965 | 0.0 | 8.212426 | 1 |
GTATGAA | 25675 | 0.0 | 8.140735 | 1 |
GTATGAC | 8730 | 0.0 | 8.057887 | 1 |
TATGAGT | 64440 | 0.0 | 7.0651097 | 2 |
ATATGAG | 62040 | 0.0 | 6.843074 | 1 |
ATGAGTC | 56455 | 0.0 | 6.735927 | 3 |
GTAGGAA | 14300 | 0.0 | 6.380888 | 1 |
GTAGGAC | 4980 | 0.0 | 6.318148 | 1 |
GTAGGTA | 8575 | 0.0 | 6.2902546 | 1 |
TGAGTCT | 58585 | 0.0 | 6.2649636 | 4 |
GTATGAT | 68725 | 0.0 | 6.2624626 | 1 |
GTATGGA | 16140 | 0.0 | 6.168667 | 1 |
GGTGGCA | 7725 | 0.0 | 6.167774 | 1 |
GAGTCTT | 60565 | 0.0 | 6.052923 | 5 |
GTAGCCA | 41100 | 0.0 | 5.933064 | 1 |
GTATTAA | 25850 | 0.0 | 5.8685975 | 1 |
GTAGTAA | 17920 | 0.0 | 5.781679 | 1 |
ACACTAC | 38215 | 0.0 | 5.7717743 | 37 |
CTATGAG | 11965 | 0.0 | 5.7665596 | 1 |
CTATGAA | 27565 | 0.0 | 5.715459 | 1 |