FastQCFastQC Report
Tue 15 Nov 2016
SRR1945884.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945884.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39312314
Sequences flagged as poor quality0
Sequence length101
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG312700.09.44784294-95
ATGCCGT274950.09.2730994-95
GGTCGCC388850.09.14654794-95
CGTATGC397500.09.01338994-95
GCCGTCT227950.08.98147394-95
TGCCGTC240450.08.96999394-95
GTATGCC359400.08.9223394-95
CGCCGTA255300.08.83055294-95
GTCGCCG389400.08.82795194-95
GCCGTAT252900.08.5566594-95
CCGTATC238600.07.842252794-95
TCGCCGT320350.07.743494-95
TCGTATG478400.07.737985694-95
TGGTCGC416950.07.683858492-93
TCTCGGG138850.07.646764394-95
CCGTCTT273950.07.13445194-95
CTCGTAT520300.07.128133392-93
CGTATCA234650.07.091617694-95
GTGGTCG506100.06.772757592-93
TCTCGTA594950.06.43793692-93