Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946224.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20363766 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 8960 | 0.0 | 21.138704 | 5 |
CCGTGAG | 6505 | 0.0 | 20.952314 | 9 |
TACCGTG | 7820 | 0.0 | 20.133505 | 7 |
ATACCGT | 8025 | 0.0 | 19.443495 | 6 |
ACCGTGA | 8520 | 0.0 | 17.762236 | 8 |
GTCGCGC | 1015 | 0.0 | 17.595388 | 8 |
TCTATAC | 14255 | 0.0 | 17.408522 | 3 |
CTATACC | 12375 | 0.0 | 16.026865 | 4 |
GTATAGA | 15185 | 0.0 | 14.911204 | 1 |
TCGGGCT | 2440 | 0.0 | 14.841642 | 94 |
CTAGTAC | 7560 | 0.0 | 14.236685 | 3 |
CATACAC | 48055 | 0.0 | 14.181579 | 3 |
TATACTG | 9545 | 0.0 | 13.7867985 | 5 |
GTACTAG | 9980 | 0.0 | 13.726029 | 1 |
TCGCGCG | 1435 | 0.0 | 13.42806 | 9 |
ACACATG | 52070 | 0.0 | 13.286223 | 6 |
CTATACT | 9680 | 0.0 | 13.206109 | 4 |
GTGTATG | 46420 | 0.0 | 13.193337 | 1 |
ACATGAC | 41125 | 0.0 | 13.050931 | 8 |
TAGTACT | 14370 | 0.0 | 12.755256 | 4 |