Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946433.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33596508 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12440 | 0.0 | 12.878659 | 5 |
GTATAGA | 22725 | 0.0 | 11.708747 | 1 |
GTCGCGC | 1935 | 0.0 | 11.409864 | 8 |
TCTATAC | 20860 | 0.0 | 10.924663 | 3 |
ATACCGT | 10380 | 0.0 | 10.680284 | 6 |
TATACTG | 15500 | 0.0 | 10.578653 | 5 |
TACCGTG | 9725 | 0.0 | 10.481826 | 7 |
CTAGGCT | 9535 | 0.0 | 10.446526 | 4 |
GCCGTGC | 2860 | 0.0 | 10.347564 | 8 |
CTAGTAC | 13100 | 0.0 | 10.222431 | 3 |
GCTGTCC | 8550 | 0.0 | 10.164106 | 8 |
CCGTGAG | 8340 | 0.0 | 10.138474 | 9 |
CATACAC | 120180 | 0.0 | 10.059773 | 3 |
ACATGAC | 102430 | 0.0 | 10.057153 | 8 |
GTATATA | 49335 | 0.0 | 9.852882 | 1 |
ACACATG | 122795 | 0.0 | 9.8162155 | 6 |
CACATGA | 119670 | 0.0 | 9.727087 | 7 |
CATGACA | 108190 | 0.0 | 9.595582 | 9 |
TAGTACT | 22745 | 0.0 | 9.460982 | 4 |
TAGGCTG | 10545 | 0.0 | 9.44552 | 5 |