FastQCFastQC Report
Tue 15 Nov 2016
SRR1946321.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946321.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22209738
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG105000.014.8604195
TATACCG81350.014.1543795
CTAGTAC81450.013.67575553
CTATACT109750.013.6177364
GTATAGA150350.013.5879071
TCTATAC134050.013.4985763
GTACTAG105850.013.4301951
CATACAC478000.013.342773
CCGTGAG62300.013.2772129
TACCGTG59400.012.9759667
GTCGCGC9850.012.8827868
GTGTATG453350.012.7506111
TAGTACT149000.012.7431684
ACATGAC354500.012.7140728
GTACTAC84650.012.4921686
ACACATG480400.012.4441836
ATACCGT70250.012.3098796
TATACAG96750.012.2899995
ACCGTGA77500.012.2498848
CTAGGCT61900.012.2241184