Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946448.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28932672 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTGAGCG | 12960 | 0.0 | 23.484407 | 94 |
TGAGCGG | 10890 | 0.0 | 19.95696 | 94 |
AGACCGG | 7450 | 0.0 | 16.732851 | 94 |
TCTGAGC | 23850 | 0.0 | 14.437866 | 94 |
TGGCGCG | 5225 | 0.0 | 14.345713 | 78-79 |
TACCGTG | 8065 | 0.0 | 13.754926 | 7 |
AGGCGTG | 5335 | 0.0 | 13.654287 | 90-91 |
TATACCG | 10170 | 0.0 | 13.590057 | 5 |
GCGTGTA | 5325 | 0.0 | 13.55381 | 92-93 |
CCGTGAG | 7550 | 0.0 | 13.321792 | 9 |
GGCGCGA | 5515 | 0.0 | 13.29221 | 80-81 |
ATACCGT | 9060 | 0.0 | 13.178452 | 6 |
GGCGTGT | 5670 | 0.0 | 12.847554 | 90-91 |
TGATGGC | 18215 | 0.0 | 12.783693 | 94 |
AGCGGGC | 5670 | 0.0 | 12.76396 | 78-79 |
GGCTGGC | 5820 | 0.0 | 12.514809 | 82-83 |
GCGCGAG | 6105 | 0.0 | 12.353997 | 80-81 |
GTATAGA | 22315 | 0.0 | 12.288089 | 1 |
CTCTGAG | 28685 | 0.0 | 12.168284 | 94 |
GCGAGGG | 6695 | 0.0 | 11.79164 | 82-83 |