FastQCFastQC Report
Tue 15 Nov 2016
SRR1946460.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946460.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28357924
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG109350.014.26841455
TATACTG147500.013.7003885
CTAGTAC94050.013.6414663
CTATACT154450.012.8404714
TCTATAC191250.012.3847243
TATACAG158800.011.6896915
CATACAC642200.011.6501083
ACATGAC515200.011.5757498
GTATAGG108950.011.4416131
TAGTACT173550.011.4273174
GTATAGA206250.011.4264781
CCGTGCG21850.011.3997139
GCCGTGC29550.011.2918278
GTACTAG124350.011.197331
CATGACA529100.011.1296839
ACACATG642800.011.1128176
ATACCGT107050.010.9751326
GTGTATG616800.010.9134961
CCGTGAG69600.010.8038919
CACATGA611100.010.7510617