FastQCFastQC Report
Tue 15 Nov 2016
SRR1946404.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946404.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18069470
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG61500.012.5346365
GAGCGCG9500.011.8715327
CTAGTAC58650.011.7812763
CCGTGAG46250.011.5828629
GTATAGA128650.011.2582341
GTATAGG60400.011.2112721
GTACTAG87550.011.0110071
TATACTG92500.010.925465
TACCGTG47400.010.9051967
ATACCGT55300.010.7073356
ACCGTGA59250.010.706958
TCTATAC119650.010.5677513
GTATTAG107800.010.5566451
CTATACT91250.010.4569774
CATACAC551500.010.4237483
ACATGAC457600.010.3923768
TATACAG88200.010.3922375
GTACTAC69450.010.0820766
ACACATG542150.010.0548266
CATGACA467100.010.0301659