Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946439.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22376976 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTGAGCG | 8840 | 0.0 | 20.415041 | 94 |
AGACCGG | 5620 | 0.0 | 19.651821 | 94 |
TGAGCGG | 8040 | 0.0 | 15.782617 | 94 |
AGCGGGC | 4405 | 0.0 | 13.0701 | 78-79 |
CCGTGAG | 5495 | 0.0 | 12.5729 | 9 |
CGGGCTG | 4675 | 0.0 | 12.564348 | 80-81 |
TGGCGCG | 4370 | 0.0 | 12.314387 | 78-79 |
TCTGAGC | 15930 | 0.0 | 12.184439 | 94 |
GTATAGA | 14130 | 0.0 | 12.04556 | 1 |
CAGACCG | 5340 | 0.0 | 12.013886 | 92-93 |
GGCTGGC | 4940 | 0.0 | 11.890297 | 82-83 |
TATACCG | 7855 | 0.0 | 11.7302 | 5 |
GCGGGCT | 5415 | 0.0 | 11.630411 | 78-79 |
GGCAGAC | 5415 | 0.0 | 11.587636 | 90-91 |
TACCGTG | 6340 | 0.0 | 11.34259 | 7 |
TCTCTGA | 44095 | 0.0 | 11.201717 | 94 |
GCGTGTA | 4470 | 0.0 | 11.197839 | 92-93 |
TATACTG | 9875 | 0.0 | 11.1873255 | 5 |
TCTATAC | 12410 | 0.0 | 11.136973 | 3 |
ATACCGT | 6460 | 0.0 | 11.132091 | 6 |