FastQCFastQC Report
Tue 15 Nov 2016
SRR1946425.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946425.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21331538
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC264580.12403231309434884No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTGAG55550.012.6847449
TATACCG72250.012.290365
CTAGTAC83100.011.4216193
TACCGTG56150.011.294287
ATACCGT62850.010.9872146
CCTAGTA86800.010.8265642
ACATGAC773200.010.4073478
ACCGTGA72550.010.3599368
TCTATAC126500.010.2517013
GTATAGA143900.010.1931041
CATACAC931600.09.9310143
ACACATG914750.09.895896
CATGACA807350.09.8798499
CACATGA891300.09.8558087
TATACTG95400.09.7511875
GTACTAC88350.09.7301626
GTATTAT161050.09.6330961
CTGTCCC53300.09.4304219
GACCGTG34600.09.3680137
CTATACC100150.09.3359194