Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946407.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44144832 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTGAG | 9545 | 0.0 | 10.490972 | 9 |
TATACCG | 13810 | 0.0 | 10.451199 | 5 |
CTAGTAC | 17000 | 0.0 | 10.370456 | 3 |
GTATAGA | 26055 | 0.0 | 10.249363 | 1 |
ACATGAC | 122730 | 0.0 | 10.243916 | 8 |
CATACAC | 144405 | 0.0 | 10.222637 | 3 |
TAGACCG | 9910 | 0.0 | 10.199672 | 5 |
ACACATG | 140580 | 0.0 | 10.193374 | 6 |
CACATGA | 133985 | 0.0 | 9.838364 | 7 |
GTATTAG | 21930 | 0.0 | 9.818982 | 1 |
CATGACA | 129785 | 0.0 | 9.66799 | 9 |
TGGACTT | 123430 | 0.0 | 9.64035 | 5 |
GGACTTT | 119580 | 0.0 | 9.593859 | 6 |
TCATACA | 153550 | 0.0 | 9.513189 | 2 |
GTGTATG | 135265 | 0.0 | 9.46459 | 1 |
GTATATA | 60285 | 0.0 | 9.350817 | 1 |
ATGGACT | 126070 | 0.0 | 9.28164 | 4 |
TATACTG | 20895 | 0.0 | 9.269925 | 5 |
TATGGAC | 129650 | 0.0 | 9.257501 | 3 |
GTATAGG | 15290 | 0.0 | 9.255473 | 1 |