FastQCFastQC Report
Tue 15 Nov 2016
SRR1946334.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946334.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46726772
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC20600.016.4199188
TATACCG164400.016.0595635
TCTATAC300550.015.1940123
TACCGTG129250.014.72075757
TATACTG241300.014.621165
CTATACT243900.013.8496884
ATACCGT145250.013.4549176
CATACAC1089150.013.4022113
GTATAGA322550.013.118231
GTATAGG163050.013.0907581
TCGCGCG26700.013.0204559
ACATGAC946250.012.4020158
ACACATG1121700.012.3719356
CTAGTAC152650.012.3415733
CTAGGCT128750.012.078244
GTGTATG1031250.012.0630081
CATGACA964600.012.0151059
CCGTGAG111000.011.9775839
GTATATA631950.011.94792651
TATACAG212500.011.9380675