Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946336.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 54086646 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGTAC | 20250 | 0.0 | 15.173292 | 3 |
TATACCG | 16595 | 0.0 | 14.126478 | 5 |
CTATACT | 28935 | 0.0 | 14.044934 | 4 |
TCTATAC | 33845 | 0.0 | 14.02019 | 3 |
TATACTG | 29080 | 0.0 | 13.893596 | 5 |
GTACTAG | 23980 | 0.0 | 13.68512 | 1 |
GTATAGG | 18420 | 0.0 | 13.451272 | 1 |
CATACAC | 135425 | 0.0 | 13.418832 | 3 |
ACATGAC | 106075 | 0.0 | 12.724515 | 8 |
ACACATG | 133610 | 0.0 | 12.658393 | 6 |
CCTAGTA | 22610 | 0.0 | 12.592093 | 2 |
GTATAGA | 35800 | 0.0 | 12.5287485 | 1 |
TAGTACT | 38310 | 0.0 | 12.496521 | 4 |
TATACAG | 25660 | 0.0 | 12.486431 | 5 |
CATGACA | 105625 | 0.0 | 12.422896 | 9 |
CACATGA | 129345 | 0.0 | 12.146055 | 7 |
GACCGTG | 10030 | 0.0 | 12.131583 | 7 |
TAGACCG | 14425 | 0.0 | 11.985126 | 5 |
GTGTATG | 127215 | 0.0 | 11.933617 | 1 |
GTATATA | 81090 | 0.0 | 11.885815 | 1 |