FastQCFastQC Report
Tue 15 Nov 2016
SRR1946469.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946469.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42651084
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG225050.012.8845615
CTATACT234300.012.8171664
TATACCG137750.012.52096755
TCTATAC280550.012.0778173
TAGACTG101100.011.8071775
CCGTGCG31000.011.6735989
TATACAG235650.011.4075415
CATACAC859950.011.3508073
GTATAGG158150.010.9153511
GTATAGA295350.010.7818321
GTATATA625600.010.6389941
ACACATG860700.010.6365716
TAGACCG105750.010.6213815
ACATGAC703400.010.5298688
ACCGTGC60050.010.4089688
CATGACA712450.010.3962699
GTATTAG303350.010.37344551
TAGTACT250100.010.3538384
GTGTATG823750.010.0783671
TAGACAG128800.010.0706315