Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946402.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30217154 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 32801 | 0.1085509244186266 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10165 | 0.0 | 13.683899 | 5 |
TACCGTG | 7530 | 0.0 | 12.668248 | 7 |
CCGTGAG | 7465 | 0.0 | 12.212058 | 9 |
TCTATAC | 18685 | 0.0 | 11.394181 | 3 |
GTATAGA | 20380 | 0.0 | 11.325838 | 1 |
ATACCGT | 9300 | 0.0 | 10.813038 | 6 |
CTAGTAC | 10080 | 0.0 | 10.723717 | 3 |
ACCGTGA | 10025 | 0.0 | 10.40604 | 8 |
ACATGAC | 98445 | 0.0 | 9.890381 | 8 |
CTGAGCG | 17895 | 0.0 | 9.849616 | 94 |
CTATACC | 14725 | 0.0 | 9.702783 | 4 |
CATACAC | 116130 | 0.0 | 9.688527 | 3 |
GTATATA | 45260 | 0.0 | 9.545398 | 1 |
ACACATG | 117280 | 0.0 | 9.516047 | 6 |
CATGACA | 101750 | 0.0 | 9.495233 | 9 |
TATACTG | 14460 | 0.0 | 9.489429 | 5 |
TGAGCGG | 17275 | 0.0 | 9.468493 | 94 |
TATACAG | 13270 | 0.0 | 9.455095 | 5 |
CACATGA | 114935 | 0.0 | 9.342205 | 7 |
GTATTAT | 23280 | 0.0 | 9.24859 | 1 |