Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946468.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22510294 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 7540 | 0.0 | 12.7152195 | 5 |
TCTATAC | 14280 | 0.0 | 11.9136915 | 3 |
CTATACT | 11330 | 0.0 | 11.323946 | 4 |
CCGTGAG | 5850 | 0.0 | 11.08671 | 9 |
TATACTG | 10905 | 0.0 | 10.98954 | 5 |
CATACAC | 65690 | 0.0 | 10.838754 | 3 |
ATACCGT | 7070 | 0.0 | 10.702162 | 6 |
ACCGTGA | 7785 | 0.0 | 10.564625 | 8 |
TACCGTG | 5815 | 0.0 | 10.425695 | 7 |
GTATAGA | 14945 | 0.0 | 10.229353 | 1 |
ACATGAC | 53580 | 0.0 | 10.227525 | 8 |
ACACATG | 65330 | 0.0 | 10.078376 | 6 |
TATACAG | 10890 | 0.0 | 9.968944 | 5 |
TAGGCTG | 6540 | 0.0 | 9.916682 | 5 |
CATGACA | 55385 | 0.0 | 9.809463 | 9 |
TACACTG | 6650 | 0.0 | 9.7526455 | 5 |
GTATTAG | 12860 | 0.0 | 9.693166 | 1 |
CACATGA | 62245 | 0.0 | 9.664303 | 7 |
TCATACA | 73015 | 0.0 | 9.551943 | 2 |
GTGTATG | 63375 | 0.0 | 9.515481 | 1 |