FastQCFastQC Report
Tue 15 Nov 2016
SRR1946378.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946378.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33925746
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG116350.016.0767785
GTCGCGC16150.015.4235998
CTATACT169600.015.2412024
CATACAC1023800.014.5613093
GTATAGA230450.014.4843021
TCTATAC206900.014.469763
TATACTG164650.014.3578255
ACATGAC760500.014.3065258
CTAGTAC120250.014.0701853
ACACATG1008550.013.993956
CATGACA778450.013.8377759
CACATGA974800.013.76007657
TACCGTG93950.013.5067037
GTGTATG969850.013.3006861
ATACCGT105550.013.1800146
TCATACA1108400.013.1742872
TAGTACT214550.012.9899834
ATCATAC1117150.012.7016411
GATTGAG894100.012.6681557
GTATTAT272550.012.5060581