FastQCFastQC Report
Tue 15 Nov 2016
SRR1946310.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946310.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29355312
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC10450.013.0441738
GAGCGCG11550.012.2092077
TATACTG144200.011.9988125
TCTATAC178300.011.2077323
TATACCG90250.011.0965535
CTAGTAC96800.010.7348773
CATACAC853300.010.6184253
CTATACT148750.010.5263684
ACATGAC618600.010.4630648
TATACAG132550.010.286655
ACACATG839400.010.2529376
TAGTACT182750.010.1889424
TACCGTG66050.010.0344717
CCGTGAG76500.010.0152499
GTACTAG120850.010.0075341
CATGACA638650.09.9800429
TAGACCG79250.09.9670295
GTATAGA187400.09.9441171
CACATGA808400.09.9371997
GCCGTGC25500.09.7694598