Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946398.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38009724 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT | 43830 | 0.11531259737639768 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 2470 | 0.0 | 15.029429 | 8 |
TCGCGCG | 3045 | 0.0 | 12.500018 | 9 |
CTGAGCG | 28025 | 0.0 | 12.478226 | 94 |
AGACCGA | 15715 | 0.0 | 11.006745 | 94 |
TGAGCGG | 25930 | 0.0 | 10.803618 | 94 |
TATACCG | 12100 | 0.0 | 10.75747 | 5 |
GTATAGA | 21885 | 0.0 | 10.503944 | 1 |
TATACTG | 16930 | 0.0 | 10.436303 | 5 |
TAGGCTG | 12565 | 0.0 | 10.172372 | 5 |
CAGACCG | 10990 | 0.0 | 9.87972 | 92-93 |
TATACAG | 16200 | 0.0 | 9.862334 | 5 |
GTATATA | 53430 | 0.0 | 9.819041 | 1 |
ACATGAC | 118315 | 0.0 | 9.738522 | 8 |
TCTGAGC | 40330 | 0.0 | 9.684971 | 94 |
CTAGTAC | 12595 | 0.0 | 9.664125 | 3 |
ATCTCTG | 111810 | 0.0 | 9.64358 | 94 |
CTAGGCT | 11485 | 0.0 | 9.616074 | 4 |
CATACAC | 153065 | 0.0 | 9.597851 | 3 |
TCTATAC | 20200 | 0.0 | 9.585323 | 3 |
TAGGCGG | 10200 | 0.0 | 9.537424 | 4 |