Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946364.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 32315372 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 11260 | 0.0 | 16.424469 | 5 |
CTAGTAC | 11445 | 0.0 | 15.052781 | 3 |
ATACCGT | 10740 | 0.0 | 14.156721 | 6 |
CCGTGAG | 8590 | 0.0 | 13.9870205 | 9 |
TATACTG | 16515 | 0.0 | 13.78468 | 5 |
TCTATAC | 21375 | 0.0 | 13.528234 | 3 |
TACCGTG | 8175 | 0.0 | 13.490255 | 7 |
CTATACT | 16630 | 0.0 | 13.323003 | 4 |
GTATAGA | 23050 | 0.0 | 13.227892 | 1 |
ACCGTGA | 11320 | 0.0 | 13.018641 | 8 |
GAGCGCG | 1840 | 0.0 | 12.75241 | 7 |
CTATACC | 16535 | 0.0 | 12.661438 | 4 |
CATACAC | 87455 | 0.0 | 12.506556 | 3 |
GTATAGG | 11245 | 0.0 | 12.283009 | 1 |
GTACTAC | 13055 | 0.0 | 12.113649 | 6 |
TAGTACT | 23035 | 0.0 | 12.023091 | 4 |
CCTAGTA | 12925 | 0.0 | 12.022725 | 2 |
TATACAG | 15495 | 0.0 | 11.935432 | 5 |
TAGGCTG | 9495 | 0.0 | 11.617333 | 5 |
ACACATG | 87495 | 0.0 | 11.541998 | 6 |