FastQCFastQC Report
Tue 15 Nov 2016
SRR1946311.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946311.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20523860
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG101500.015.4173855
CCGTGCG13000.014.0968149
CTATACT102650.013.874484
TATACCG64750.013.8620075
CATACAC484350.013.7124783
GCCGTGC23000.013.68821058
ACATGAC415500.013.3899958
ACACATG490900.013.0663456
GTGTATG469400.012.9784021
TCTATAC127400.012.9131353
CATGACA423300.012.8990469
TATACAG90450.012.780835
GTATAGA134400.012.6105271
CACATGA485500.012.456427
TAATACT161900.012.1066034
TAGGCCG21150.011.9981955
CCGTGCC17750.011.91289
GTATTAG121100.011.8961731
TCATACA548600.011.823782
CTAGGCT52900.011.8175934