FastQCFastQC Report
Tue 15 Nov 2016
SRR1946332.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946332.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53635328
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG277200.014.8633795
CTATACT288600.014.0978664
GTCGCGC21550.013.9523948
TCTATAC337850.013.3360273
CTAGGCT146550.013.0158354
CATACAC1246350.012.8316153
TATACAG254200.012.6782635
TATACCG167450.012.4568715
GCTGTCC146100.012.1550748
GTATATA773450.012.1385621
TAGGCTG176950.012.0801415
ACACATG1262700.011.9319766
ACATGAC928000.011.583088
GTGTATG1178750.011.4945961
CTGTCCC175550.011.4540489
TCATACA1375000.011.4328652
GTATAGG203100.011.4119121
CACATGA1211400.011.3941077
GTATAGA346500.011.3429081
GAGCGCG31200.011.2933487