FastQCFastQC Report
Tue 15 Nov 2016
SRR1946362.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946362.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41147188
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG154500.017.0729965
TCTATAC281050.016.6182883
TACCGTG119650.016.3151157
ATACCGT135750.015.9349636
CCGTGAG114750.015.37752159
CTAGTAC147350.015.291073
CTATACT220900.014.7044
TATACTG204850.014.6637785
ACCGTGA143900.014.6108088
GTATAGA299600.014.5204431
GTATAGG151650.013.7237251
CATACAC1054850.013.6702763
ACATGAC865550.013.45214758
CTATACC224700.013.34820654
TATACAG184700.013.1887115
ACACATG1054900.013.050856
CATGACA882700.013.0204769
TAGTACT274150.012.9779494
CTAGGCT106700.012.9332614
GTACTAG191250.012.9209661