Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946400.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26434204 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 33785 | 0.12780789616362195 | No Hit |
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT | 27109 | 0.10255273811157696 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTGAGCG | 11995 | 0.0 | 13.636325 | 94 |
TGAGCGG | 11615 | 0.0 | 11.613979 | 94 |
GTATAGA | 16220 | 0.0 | 11.448018 | 1 |
CCGTGAG | 6860 | 0.0 | 11.165672 | 9 |
TATACCG | 9070 | 0.0 | 11.087458 | 5 |
GACCGTG | 4540 | 0.0 | 10.661077 | 7 |
GTATTAG | 13185 | 0.0 | 10.624786 | 1 |
TATACTG | 12420 | 0.0 | 10.556211 | 5 |
ACCGTGA | 9295 | 0.0 | 10.414518 | 8 |
CTAGTAC | 10385 | 0.0 | 10.363378 | 3 |
ACATGAC | 101950 | 0.0 | 10.27411 | 8 |
ACACATG | 115680 | 0.0 | 10.127107 | 6 |
TACCGTG | 7140 | 0.0 | 10.069617 | 7 |
CACATGA | 113155 | 0.0 | 9.966833 | 7 |
CATACAC | 126275 | 0.0 | 9.911196 | 3 |
CATGACA | 106335 | 0.0 | 9.8371725 | 9 |
ATACCGT | 7380 | 0.0 | 9.742187 | 6 |
AGACCGT | 6180 | 0.0 | 9.580837 | 6 |
GTACTAG | 12230 | 0.0 | 9.570992 | 1 |
TCTATAC | 15305 | 0.0 | 9.488498 | 3 |