FastQCFastQC Report
Tue 15 Nov 2016
SRR1946441.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946441.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26316258
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGAGCGG104250.023.0356794
GAGCGGG68000.019.42018794
CTGAGCG115950.018.84682594
AGACCGC42100.017.9721494
GATGGCG92050.014.03992894
TGATGGC160200.013.69967794
TATACCG85900.013.1352745
GTCGCGC13850.012.8951178
GTATAGA175950.012.4267691
CTAGTAC95250.012.1419573
TCTGAGC205650.011.22084792-93
TACCGTG70800.011.0867957
CCGTGAG60350.010.98079
GGCTGGC37800.010.93985182-83
TCGCGCG17300.010.866819
TATACTG126900.010.8549315
TCTATAC154100.010.7998873
GTACTAC106350.010.5631636
TAGTACT182900.010.538744
ACATGAC806950.010.4837678