Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946279.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34138734 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 16360 | 0.0 | 15.28648 | 5 |
TATACCG | 10935 | 0.0 | 14.960277 | 5 |
CATACAC | 96605 | 0.0 | 14.131064 | 3 |
ACATGAC | 79015 | 0.0 | 13.735644 | 8 |
CTATACT | 17200 | 0.0 | 13.610667 | 4 |
ACACATG | 95165 | 0.0 | 13.484771 | 6 |
CATGACA | 81090 | 0.0 | 13.220932 | 9 |
GTGTATG | 92780 | 0.0 | 13.133499 | 1 |
CACATGA | 92125 | 0.0 | 12.990666 | 7 |
GTATAGA | 22610 | 0.0 | 12.942699 | 1 |
TCTATAC | 21085 | 0.0 | 12.9310055 | 3 |
CCGTGCC | 2590 | 0.0 | 12.884354 | 9 |
CCGTGAG | 8410 | 0.0 | 12.68627 | 9 |
CTAGTAC | 10585 | 0.0 | 12.612622 | 3 |
GATTGAG | 84625 | 0.0 | 12.520041 | 7 |
TCATACA | 107735 | 0.0 | 12.472294 | 2 |
TATACAG | 15800 | 0.0 | 12.377 | 5 |
GTCGCGC | 1230 | 0.0 | 12.228677 | 8 |
TAGACCG | 8140 | 0.0 | 12.185328 | 5 |
ATCATAC | 104335 | 0.0 | 12.174994 | 1 |