FastQCFastQC Report
Tue 15 Nov 2016
SRR1946458.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946458.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19611948
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT211340.10776084048356645No Hit
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC206460.10527256139981607No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGC21550.018.33730594
CTGAGCG62700.016.65669894
TATACCG63050.014.6135745
TGAGCGG60200.014.30072594
CCGTGAG45300.013.7989449
GAGCGGG40100.012.55286694
ACCGTGA65650.012.0274228
CTAGTAC68950.011.6586253
ATACCGT60300.011.5368366
TCTGAGC121400.011.12158694
TGATGGC97750.011.0210394
GTATAGA123900.010.9710181
GTACTAG83950.010.9253231
TACCGTG50800.010.9182457
ACATGAC747950.010.2992218
TATACTG89200.010.2767365
GAGCGCG9156.002665E-1110.2740927
TAGACTG47150.010.2693055
CTATACT97200.010.10800654
GTATTAG103500.010.0432041