FastQCFastQC Report
Tue 15 Nov 2016
SRR1946354.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946354.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43134140
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG159300.016.4153965
GTCGCGC21650.014.9640778
TACCGTG122850.014.0263327
TCTATAC275850.014.024143
TATACTG220850.013.987515
CTAGTAC165250.013.9496093
CTAGGCT120100.013.6819364
ATACCGT137350.013.4679856
GCTGTCC115150.013.4557778
CTATACT225350.013.2710224
TAGGCTG140200.013.1600185
GTATAGA300850.013.1013781
CATACAC1042650.012.9996083
TCGCGCG28850.012.8570119
CTGTCCC145700.012.8257359
TATACAG206250.012.2916945
GTGTATG985700.012.24879551
ACACATG1052850.012.0758376
ACATGAC738850.012.0360088
CCGTGAG107650.011.9507549