Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946458.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19611948 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT | 21134 | 0.10776084048356645 | No Hit |
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 20646 | 0.10527256139981607 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGACCGC | 2155 | 0.0 | 18.337305 | 94 |
CTGAGCG | 6270 | 0.0 | 16.656698 | 94 |
TATACCG | 6305 | 0.0 | 14.613574 | 5 |
TGAGCGG | 6020 | 0.0 | 14.300725 | 94 |
CCGTGAG | 4530 | 0.0 | 13.798944 | 9 |
GAGCGGG | 4010 | 0.0 | 12.552866 | 94 |
ACCGTGA | 6565 | 0.0 | 12.027422 | 8 |
CTAGTAC | 6895 | 0.0 | 11.658625 | 3 |
ATACCGT | 6030 | 0.0 | 11.536836 | 6 |
TCTGAGC | 12140 | 0.0 | 11.121586 | 94 |
TGATGGC | 9775 | 0.0 | 11.02103 | 94 |
GTATAGA | 12390 | 0.0 | 10.971018 | 1 |
GTACTAG | 8395 | 0.0 | 10.925323 | 1 |
TACCGTG | 5080 | 0.0 | 10.918245 | 7 |
ACATGAC | 74795 | 0.0 | 10.299221 | 8 |
TATACTG | 8920 | 0.0 | 10.276736 | 5 |
GAGCGCG | 915 | 6.002665E-11 | 10.274092 | 7 |
TAGACTG | 4715 | 0.0 | 10.269305 | 5 |
CTATACT | 9720 | 0.0 | 10.1080065 | 4 |
GTATTAG | 10350 | 0.0 | 10.043204 | 1 |