FastQCFastQC Report
Tue 15 Nov 2016
SRR1946296.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946296.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19451210
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG69850.017.1576395
TACCGTG47400.017.0542987
TATACTG106500.016.5928885
GTCGCGC6800.015.2053888
ACCGTGA64900.015.0626848
CCGTGAG51050.015.0063699
TAATACT166000.014.807354
CTATACT106800.014.5660074
TCTATAC135300.014.5198543
GCCGTGC19300.014.3674098
GTATAGA140500.014.1070391
ACATGAC399350.013.9459598
ATACCGT63050.013.9392786
CATACAC526900.013.79894353
CATGACA409200.013.4954079
GTATTAG116500.013.4165941
ACACATG507300.013.2851986
ATAATAC162900.013.1849613
GTGTATG489650.013.0858671
CACATGA490850.012.8686867