Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946446.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 105871744 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 33270 | 0.0 | 11.614162 | 5 |
TATACTG | 52490 | 0.0 | 11.481016 | 5 |
CTAGTAC | 35225 | 0.0 | 11.169748 | 3 |
CCGTGAG | 27785 | 0.0 | 11.162368 | 9 |
GTATAGA | 72125 | 0.0 | 10.812124 | 1 |
ATACCGT | 29325 | 0.0 | 10.769056 | 6 |
GTACTAG | 44780 | 0.0 | 10.75544 | 1 |
CATACAC | 362795 | 0.0 | 10.636477 | 3 |
CTATACT | 53415 | 0.0 | 10.630962 | 4 |
TACCGTG | 23625 | 0.0 | 10.58165 | 7 |
ACACATG | 352875 | 0.0 | 10.460963 | 6 |
TCTATAC | 67465 | 0.0 | 10.458539 | 3 |
ACATGAC | 293660 | 0.0 | 10.412558 | 8 |
CCGTGCG | 4960 | 0.0 | 10.232102 | 9 |
GTATTAG | 59690 | 0.0 | 10.227875 | 1 |
TAGACCG | 25585 | 0.0 | 10.050109 | 5 |
CATGACA | 302040 | 0.0 | 10.04124 | 9 |
GTCGCGC | 3280 | 0.0 | 10.028721 | 8 |
GACCGTG | 17975 | 0.0 | 10.012521 | 7 |
ACCGTGA | 35810 | 0.0 | 10.012478 | 8 |