Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946286.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43558528 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 15215 | 0.0 | 17.364235 | 5 |
TATACTG | 21245 | 0.0 | 14.914013 | 5 |
TCTATAC | 27940 | 0.0 | 14.301509 | 3 |
ATACCGT | 14110 | 0.0 | 14.092554 | 6 |
CTATACT | 22785 | 0.0 | 14.029791 | 4 |
CCGTGAG | 11165 | 0.0 | 13.387266 | 9 |
TACCGTG | 11890 | 0.0 | 13.362947 | 7 |
CATACAC | 104600 | 0.0 | 13.240073 | 3 |
GTATAGA | 31165 | 0.0 | 12.573612 | 1 |
CTATACC | 21890 | 0.0 | 12.43438 | 4 |
ACACATG | 105725 | 0.0 | 12.387388 | 6 |
GTGTATG | 98170 | 0.0 | 12.362978 | 1 |
TATACAG | 19955 | 0.0 | 12.273752 | 5 |
ACATGAC | 84720 | 0.0 | 12.250803 | 8 |
ACCGTGA | 14325 | 0.0 | 12.173927 | 8 |
TAGTACT | 26005 | 0.0 | 12.147971 | 4 |
GTATAGG | 15175 | 0.0 | 11.965774 | 1 |
GGACCGT | 4755 | 0.0 | 11.962205 | 6 |
CATGACA | 86560 | 0.0 | 11.788705 | 9 |
TAATACT | 35620 | 0.0 | 11.732734 | 4 |