FastQCFastQC Report
Tue 15 Nov 2016
SRR1946274.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946274.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21589724
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG72550.015.2220725
ATACCGT58250.014.6018486
TATACTG96050.013.4548435
TACCGTG53550.013.1630027
CATACAC675450.012.8111573
CTAGTAC62000.012.7363613
TCTATAC124550.012.6801193
ACATGAC530350.012.5288158
ACACATG684450.012.296436
TAGACTG54100.012.2479985
GTATAGA136200.012.2326551
TATACAG97100.012.1478045
CATGACA550850.012.0283459
CACATGA663250.011.9242227
CTATACT104800.011.8853624
TAGTACT122550.011.8131354
GTATTAG110700.011.6917521
GTGTATG645800.011.64590551
TCATACA749100.011.5641392
CTATACC95250.011.4485584