Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946304.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19089604 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATACT | 9840 | 0.0 | 16.241365 | 4 |
GTCGCGC | 735 | 0.0 | 15.983585 | 8 |
TATACTG | 10510 | 0.0 | 15.694584 | 5 |
CATACAC | 47335 | 0.0 | 15.024335 | 3 |
ACATGAC | 38135 | 0.0 | 14.836254 | 8 |
CATGACA | 38565 | 0.0 | 14.658646 | 9 |
ACACATG | 46565 | 0.0 | 14.623177 | 6 |
TATACCG | 6830 | 0.0 | 14.311597 | 5 |
CACATGA | 45095 | 0.0 | 14.078392 | 7 |
GAGCGCG | 1045 | 0.0 | 13.940281 | 7 |
TCTATAC | 12730 | 0.0 | 13.920399 | 3 |
TATACAG | 9060 | 0.0 | 13.745581 | 5 |
GTATATA | 29050 | 0.0 | 13.515271 | 1 |
TCATACA | 52405 | 0.0 | 13.436241 | 2 |
GTATAGA | 13710 | 0.0 | 13.288574 | 1 |
GTATAGG | 7275 | 0.0 | 13.200853 | 1 |
CTAGTAC | 7125 | 0.0 | 13.128252 | 3 |
GTGTATG | 45395 | 0.0 | 13.046003 | 1 |
ATCATAC | 53490 | 0.0 | 12.770259 | 1 |
CCTATAC | 7775 | 0.0 | 12.635273 | 3 |