Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946296.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19451210 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 6985 | 0.0 | 17.157639 | 5 |
TACCGTG | 4740 | 0.0 | 17.054298 | 7 |
TATACTG | 10650 | 0.0 | 16.592888 | 5 |
GTCGCGC | 680 | 0.0 | 15.205388 | 8 |
ACCGTGA | 6490 | 0.0 | 15.062684 | 8 |
CCGTGAG | 5105 | 0.0 | 15.006369 | 9 |
TAATACT | 16600 | 0.0 | 14.80735 | 4 |
CTATACT | 10680 | 0.0 | 14.566007 | 4 |
TCTATAC | 13530 | 0.0 | 14.519854 | 3 |
GCCGTGC | 1930 | 0.0 | 14.367409 | 8 |
GTATAGA | 14050 | 0.0 | 14.107039 | 1 |
ACATGAC | 39935 | 0.0 | 13.945959 | 8 |
ATACCGT | 6305 | 0.0 | 13.939278 | 6 |
CATACAC | 52690 | 0.0 | 13.7989435 | 3 |
CATGACA | 40920 | 0.0 | 13.495407 | 9 |
GTATTAG | 11650 | 0.0 | 13.416594 | 1 |
ACACATG | 50730 | 0.0 | 13.285198 | 6 |
ATAATAC | 16290 | 0.0 | 13.184961 | 3 |
GTGTATG | 48965 | 0.0 | 13.085867 | 1 |
CACATGA | 49085 | 0.0 | 12.868686 | 7 |