FastQCFastQC Report
Tue 15 Nov 2016
SRR1946300.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946300.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17671112
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC202540.11461644292673828No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG89950.016.6142645
TATACCG61600.016.4026075
CTATACT94500.016.3645954
GTCGCGC9700.015.9870328
ACATGAC441750.015.4353498
CATACAC551000.015.0397933
TAGGCTG55100.014.9259365
GTGTATG500400.014.85495951
CATGACA456750.014.7432519
ACACATG555900.014.6837226
CACATGA526600.014.5100127
GATTGAG460100.014.350017
TAGTACT99300.014.1534764
TTGAGTA502750.014.0111969
ATTGAGT504950.013.9408458
TCATACA597750.013.6354882
CTAGGCT53400.013.4676354
ACAGTGC30750.013.448178
TCTATAC111550.013.4419493
GCCGTGC16950.013.3075228