Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946283.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41918780 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 15625 | 0.0 | 15.255995 | 5 |
TATACTG | 20535 | 0.0 | 14.49311 | 5 |
CTGAGCG | 10555 | 0.0 | 14.265927 | 94 |
GTATAGA | 29360 | 0.0 | 14.1348 | 1 |
CTATACT | 21585 | 0.0 | 14.1149435 | 4 |
CATACAC | 105290 | 0.0 | 13.235853 | 3 |
ATACCGT | 14575 | 0.0 | 13.128171 | 6 |
TACCGTG | 12615 | 0.0 | 13.080232 | 7 |
GTCGCGC | 1735 | 0.0 | 13.004953 | 8 |
TATACAG | 19775 | 0.0 | 12.815184 | 5 |
TCTATAC | 27765 | 0.0 | 12.717541 | 3 |
CCGTGAG | 11090 | 0.0 | 12.715212 | 9 |
GTGTATG | 99850 | 0.0 | 12.402663 | 1 |
ACACATG | 104010 | 0.0 | 12.2628975 | 6 |
ACATGAC | 79745 | 0.0 | 12.149029 | 8 |
ACCGTGA | 14565 | 0.0 | 12.006032 | 8 |
GTATAGG | 14750 | 0.0 | 11.930448 | 1 |
CATGACA | 82315 | 0.0 | 11.711718 | 9 |
TAATACT | 34565 | 0.0 | 11.643764 | 4 |
GTATTAT | 36665 | 0.0 | 11.613792 | 1 |