FastQCFastQC Report
Tue 15 Nov 2016
SRR1946455.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946455.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43248330
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGAGCG184150.017.2446994
TGAGCGG176500.015.27331394
GTCGCGC42800.011.9694738
TATACCG172950.011.660295
GTATAGA263250.011.344661
TCTGAGC315650.011.25290194
GCGTGTA68750.011.0116392-93
AGGCGTG72450.010.83323890-91
TATACTG186050.010.8140095
TCGCGCG48350.010.7898089
GCTGTCC127400.010.7722328
ACATGAC1390400.010.6208358
TAGGCTG144550.010.5040575
ACACATG1744200.010.2728646
CATACAC1741700.010.2723213
AGACCGG117750.010.26822994
CACATGA1682350.010.225697
TGATGGC232550.010.1557294
CATGACA1475500.010.0527539
GTATATA609150.010.0293091