FastQCFastQC Report
Tue 15 Nov 2016
SRR1946290.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946290.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24891988
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGA153250.013.4197611
TATACTG120000.013.3149355
TCTATAC140850.013.048743
TATACCG73200.012.9040585
TAGACCG59950.012.8557085
CTAGTAC75800.012.8365953
GTACTAG94950.012.7875861
CATACAC688150.012.67095853
CTATACT123400.012.5703524
ACATGAC563550.012.3405848
GTGTATG655900.012.2908961
GACCGTG49150.012.2376287
TATACAG112250.012.0990935
TACCGTG58800.012.0673097
CATGACA573400.011.9728669
TAGTACT152000.011.78234
ACACATG678500.011.7807316
CCGTGAG61300.011.6516849
TAGGACT80750.011.5840184
ATACCGT63700.011.5080826