Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946271.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33256118 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10925 | 0.0 | 12.136428 | 5 |
TACCGTG | 7985 | 0.0 | 11.302564 | 7 |
ATACCGT | 9635 | 0.0 | 10.732801 | 6 |
TCTATAC | 20840 | 0.0 | 10.717249 | 3 |
CATACAC | 84855 | 0.0 | 10.689126 | 3 |
GTATAGA | 22555 | 0.0 | 10.662837 | 1 |
ACATGAC | 68395 | 0.0 | 10.466764 | 8 |
TATACTG | 16585 | 0.0 | 10.347622 | 5 |
ACACATG | 83960 | 0.0 | 10.3291855 | 6 |
CATGACA | 70290 | 0.0 | 10.10446 | 9 |
CACATGA | 80830 | 0.0 | 10.060606 | 7 |
GTATATA | 46770 | 0.0 | 10.032808 | 1 |
CTATACT | 16745 | 0.0 | 9.716088 | 4 |
GTGTATG | 83635 | 0.0 | 9.499026 | 1 |
GTATTAG | 19395 | 0.0 | 9.463887 | 1 |
CTATACC | 16645 | 0.0 | 9.3789625 | 4 |
TCATACA | 95565 | 0.0 | 9.371707 | 2 |
TATACAG | 14615 | 0.0 | 9.329586 | 5 |
ATCATAC | 93745 | 0.0 | 9.177467 | 1 |
TAATACT | 26475 | 0.0 | 9.129093 | 4 |