Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946353.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 45238810 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATACT | 23890 | 0.0 | 14.857196 | 4 |
TATACTG | 23375 | 0.0 | 14.521265 | 5 |
TATACCG | 13340 | 0.0 | 13.619867 | 5 |
TATACAG | 20910 | 0.0 | 13.493922 | 5 |
TCTATAC | 27160 | 0.0 | 13.431437 | 3 |
CTAGTAC | 14080 | 0.0 | 13.371278 | 3 |
CATACAC | 130540 | 0.0 | 13.23535 | 3 |
TAGACCG | 10520 | 0.0 | 13.031214 | 5 |
GTATAGG | 15385 | 0.0 | 13.008438 | 1 |
GTCGCGC | 1805 | 0.0 | 12.746328 | 8 |
ACATGAC | 93215 | 0.0 | 12.738822 | 8 |
ACACATG | 123965 | 0.0 | 12.680175 | 6 |
CATGACA | 95650 | 0.0 | 12.3458 | 9 |
CACATGA | 119185 | 0.0 | 12.243809 | 7 |
TAGTACT | 26820 | 0.0 | 12.201275 | 4 |
TATACTA | 40515 | 0.0 | 12.120864 | 5 |
GTATATA | 62485 | 0.0 | 12.059843 | 1 |
TACCGTG | 11095 | 0.0 | 12.018441 | 7 |
GTGTATG | 125625 | 0.0 | 11.978266 | 1 |
TCATACA | 145395 | 0.0 | 11.829337 | 2 |