Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946406.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40821526 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 13195 | 0.0 | 11.579783 | 5 |
ATACCGT | 11450 | 0.0 | 11.205669 | 6 |
GTATAGA | 25365 | 0.0 | 10.694999 | 1 |
TACCGTG | 10955 | 0.0 | 10.681677 | 7 |
CTAGTAC | 12440 | 0.0 | 10.6194315 | 3 |
GTATATA | 53285 | 0.0 | 10.411585 | 1 |
CATACAC | 131190 | 0.0 | 10.213143 | 3 |
CTATACT | 18110 | 0.0 | 10.202084 | 4 |
ACACATG | 127100 | 0.0 | 9.935799 | 6 |
TCTATAC | 23830 | 0.0 | 9.844459 | 3 |
TATACTG | 18200 | 0.0 | 9.816093 | 5 |
ACATGAC | 96440 | 0.0 | 9.693524 | 8 |
CACATGA | 119845 | 0.0 | 9.469994 | 7 |
GTATTAT | 28305 | 0.0 | 9.467854 | 1 |
TAGTACT | 23240 | 0.0 | 9.447035 | 4 |
TCATACA | 141375 | 0.0 | 9.44112 | 2 |
GTATAGG | 13885 | 0.0 | 9.37937 | 1 |
GTGTATG | 122360 | 0.0 | 9.375408 | 1 |
GTATTAG | 19435 | 0.0 | 9.168419 | 1 |
ATCATAC | 139505 | 0.0 | 9.116273 | 1 |