Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946454.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38284010 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1760 | 0.0 | 13.886617 | 8 |
CTGAGCG | 10210 | 0.0 | 13.178347 | 94 |
TATACCG | 13060 | 0.0 | 12.562037 | 5 |
TATACTG | 17475 | 0.0 | 11.486521 | 5 |
TCGCGCG | 2285 | 0.0 | 11.312953 | 9 |
TGAGCGG | 10580 | 0.0 | 10.983276 | 94 |
ATACCGT | 10240 | 0.0 | 10.465938 | 6 |
AGACCGC | 5365 | 0.0 | 10.43513 | 94 |
GTATTAG | 20600 | 0.0 | 10.38815 | 1 |
ACATGAC | 121400 | 0.0 | 10.344835 | 8 |
CATACAC | 146440 | 0.0 | 10.163165 | 3 |
ACACATG | 144315 | 0.0 | 10.044911 | 6 |
GTATATA | 55850 | 0.0 | 9.928523 | 1 |
CATGACA | 127475 | 0.0 | 9.910687 | 9 |
GTATAGA | 23330 | 0.0 | 9.878144 | 1 |
CACATGA | 140360 | 0.0 | 9.818831 | 7 |
GTATTAT | 29355 | 0.0 | 9.773313 | 1 |
TCTATAC | 22495 | 0.0 | 9.759076 | 3 |
GTATAGG | 12915 | 0.0 | 9.723237 | 1 |
CTATACT | 18825 | 0.0 | 9.539073 | 4 |