FastQCFastQC Report
Tue 15 Nov 2016
SRR1946409.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946409.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34057394
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACCGTG78100.012.2751737
CCGTGAG75750.012.1022219
TATACCG108800.011.1047725
GTATAGA235300.011.0489261
ATACCGT96500.010.4710666
TATACTG164700.010.4184885
ACCGTGA105150.010.4145178
GACCGTG45250.010.1778497
TAGACCG66500.010.1092715
TCTATAC212100.09.9960543
CTAGTAC106500.09.9317463
GTATAGG112150.09.7672791
GTATTAG189700.09.7396231
GTATATA499950.09.6009921
CTATACT169200.09.4743044
AGACCGT64200.09.4435326
CATACAC1088050.09.3584153
TATACAG151850.09.3187385
GTACTAG133250.09.3143721
TAGTACT212300.09.123064