FastQCFastQC Report
Tue 15 Nov 2016
SRR1946418.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946418.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12626972
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC128920.10209890383854499No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGA84100.012.31028651
TATACCG44150.011.6176065
ATACCGT36600.011.1856816
CTAGTAC46700.010.882133
TATACTG54450.010.543455
ACATGAC429850.010.3240088
TACCGTG31700.010.2427727
ACACATG536600.010.0498196
CATACAC549600.09.9572643
CATGACA444350.09.9454649
CACATGA522150.09.8774087
GTATATA175850.09.6606491
GTCGCGC5851.4086627E-59.653378
GTATTAT90700.09.5466731
TCTATAC69750.09.5122213
TATACAG52600.09.4828955
GTACTAG59600.09.474941
GTGTATG524550.09.3839641
TCATACA593800.09.3501332
GTATTAG76850.09.3076751