Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946384.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30229442 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 33283 | 0.11010127146905324 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGACCGC | 5450 | 0.0 | 17.42193 | 94 |
GACCGCA | 4775 | 0.0 | 11.12363 | 94 |
GTCGCGC | 1710 | 0.0 | 10.442796 | 8 |
GGCAGAC | 7135 | 0.0 | 10.277185 | 90-91 |
TACCGTG | 7635 | 0.0 | 10.09402 | 7 |
TATACCG | 9885 | 0.0 | 10.078362 | 5 |
ACATGAC | 102985 | 0.0 | 9.910948 | 8 |
GTATAGA | 18300 | 0.0 | 9.738885 | 1 |
CCGTGAG | 6100 | 0.0 | 9.706714 | 9 |
TATACTG | 13270 | 0.0 | 9.703097 | 5 |
ATACCGT | 8120 | 0.0 | 9.664763 | 6 |
GTATTAG | 15570 | 0.0 | 9.664569 | 1 |
GGCTGGC | 11905 | 0.0 | 9.633894 | 94 |
ACACATG | 125370 | 0.0 | 9.603207 | 6 |
CATACAC | 125980 | 0.0 | 9.566621 | 3 |
CTGAGCG | 22400 | 0.0 | 9.526848 | 94 |
CACATGA | 121545 | 0.0 | 9.52649 | 7 |
CAGACCG | 7755 | 0.0 | 9.516169 | 92-93 |
CATGACA | 108480 | 0.0 | 9.486936 | 9 |
GTATATA | 42410 | 0.0 | 9.358263 | 1 |