Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946432.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28699024 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATAGA | 18010 | 0.0 | 10.545922 | 1 |
CTATACT | 14300 | 0.0 | 9.955829 | 4 |
ACTGCGC | 3445 | 0.0 | 9.954176 | 8 |
TATACCG | 8910 | 0.0 | 9.913632 | 5 |
TATACTG | 14040 | 0.0 | 9.805126 | 5 |
TCTATAC | 16465 | 0.0 | 9.760386 | 3 |
CATACAC | 99410 | 0.0 | 9.656971 | 3 |
GTATATA | 40565 | 0.0 | 9.561353 | 1 |
GTATTAT | 22905 | 0.0 | 9.5442 | 1 |
ACACATG | 100395 | 0.0 | 9.442414 | 6 |
ACATGAC | 79340 | 0.0 | 9.260113 | 8 |
GTGTATG | 96345 | 0.0 | 9.193239 | 1 |
CTAGTAC | 8620 | 0.0 | 8.994547 | 3 |
TAGACCG | 6095 | 0.0 | 8.942047 | 5 |
CACATGA | 96690 | 0.0 | 8.934565 | 7 |
CATGACA | 82810 | 0.0 | 8.872069 | 9 |
GATTGAG | 89800 | 0.0 | 8.872025 | 7 |
GTCTTAG | 8970 | 0.0 | 8.8575 | 1 |
TCATACA | 107875 | 0.0 | 8.838216 | 2 |
GTATTAG | 15945 | 0.0 | 8.815837 | 1 |