Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946452.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28040540 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 36284 | 0.12939836394020943 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTGAGCG | 10690 | 0.0 | 16.943304 | 94 |
TGAGCGG | 10150 | 0.0 | 16.778671 | 94 |
GTCGCGC | 1865 | 0.0 | 13.356505 | 8 |
TCGCGCG | 2220 | 0.0 | 11.643944 | 9 |
TGATGGC | 15250 | 0.0 | 11.198292 | 94 |
TCTGAGC | 19380 | 0.0 | 11.166553 | 94 |
ATCTCTG | 56220 | 0.0 | 10.819887 | 94 |
TCTCTGA | 49600 | 0.0 | 10.623103 | 94 |
GCTGTCC | 7700 | 0.0 | 10.4986515 | 8 |
TATACCG | 8910 | 0.0 | 10.446425 | 5 |
ACATGAC | 98290 | 0.0 | 10.438552 | 8 |
TATACTG | 12270 | 0.0 | 10.267636 | 5 |
TAGGCTG | 8975 | 0.0 | 10.16126 | 5 |
GTATTAG | 14200 | 0.0 | 10.003006 | 1 |
CTATACT | 12965 | 0.0 | 9.971039 | 4 |
ACACATG | 122565 | 0.0 | 9.9559 | 6 |
TATACAG | 11860 | 0.0 | 9.948768 | 5 |
CACATGA | 118185 | 0.0 | 9.938992 | 7 |
CATGACA | 102880 | 0.0 | 9.913321 | 9 |
CATACAC | 121120 | 0.0 | 9.869854 | 3 |