FastQCFastQC Report
Tue 15 Nov 2016
SRR1946446.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946446.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105871744
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG332700.011.6141625
TATACTG524900.011.4810165
CTAGTAC352250.011.1697483
CCGTGAG277850.011.1623689
GTATAGA721250.010.8121241
ATACCGT293250.010.7690566
GTACTAG447800.010.755441
CATACAC3627950.010.6364773
CTATACT534150.010.6309624
TACCGTG236250.010.581657
ACACATG3528750.010.4609636
TCTATAC674650.010.4585393
ACATGAC2936600.010.4125588
CCGTGCG49600.010.2321029
GTATTAG596900.010.2278751
TAGACCG255850.010.0501095
CATGACA3020400.010.041249
GTCGCGC32800.010.0287218
GACCGTG179750.010.0125217
ACCGTGA358100.010.0124788