Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946464.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27858876 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 13485 | 0.0 | 14.0447 | 5 |
TATACCG | 9735 | 0.0 | 13.468728 | 5 |
CTATACT | 14625 | 0.0 | 12.692862 | 4 |
TACACTG | 8790 | 0.0 | 12.564272 | 5 |
TCTATAC | 17440 | 0.0 | 11.991454 | 3 |
GTATAGA | 19345 | 0.0 | 11.330458 | 1 |
TAGACTG | 6480 | 0.0 | 11.313786 | 5 |
TATACAG | 17665 | 0.0 | 11.173622 | 5 |
GTATATA | 38165 | 0.0 | 11.054968 | 1 |
TAATACT | 29555 | 0.0 | 10.971764 | 4 |
CATACAC | 52985 | 0.0 | 10.953991 | 3 |
ACAGTGC | 5835 | 0.0 | 10.953745 | 8 |
GTATTAG | 21240 | 0.0 | 10.895342 | 1 |
ATACTGT | 18270 | 0.0 | 10.7008 | 6 |
ACATGAC | 41685 | 0.0 | 10.586451 | 8 |
ACACATG | 52365 | 0.0 | 10.455535 | 6 |
TATACTA | 23215 | 0.0 | 10.4255 | 5 |
TAGACCG | 5540 | 0.0 | 10.349239 | 5 |
GTATAAT | 26710 | 0.0 | 10.30178 | 1 |
CTAGTAC | 8175 | 0.0 | 10.232709 | 3 |