FastQCFastQC Report
Tue 15 Nov 2016
SRR1946411.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946411.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38691232
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG122600.012.0411135
GTATAGA243750.011.7854891
CTAGTAC142750.011.1975633
TCTATAC211600.010.6646423
GTCGCGC25750.010.4036928
CCGTGAG83250.010.3342819
TACCGTG86550.010.2621557
ATACCGT102550.010.1740996
TATACTG173100.010.1578555
CATACAC1436700.010.150713
ACCGTGA120250.09.9665548
ACATGAC1150600.09.8605878
TCGCGCG28800.09.7942739
ACACATG1429900.09.7650776
GTATATA545650.09.7540121
CTATACT177550.09.717624
GTACTAC151450.09.6819746
TAGGCCG44850.09.5390785
GTGTATG1349250.09.5235361
CATGACA1206500.09.4648489