FastQCFastQC Report
Tue 15 Nov 2016
SRR1946287.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946287.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35748986
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG129250.015.4580175
TCTATAC225700.014.4759423
TATACTG172400.013.9613735
TACCGTG92700.013.5903827
CCGTGAG85750.013.4841089
CATACAC966750.013.3287193
ATACCGT112100.013.2933326
ACATGAC773800.013.2551418
GTCGCGC17050.013.2335148
CTAGTAC119900.013.2130873
CTATACT187150.013.1373344
GTATAGA239050.013.0873151
CATGACA793100.012.7833159
ACACATG981000.012.7225966
GTGTATG921700.012.5869671
ACCGTGA118550.012.25223358
CACATGA947350.012.2415187
TATACAG164200.012.1964065
GTACTAG141950.012.1300711
ACTGTGC52900.011.9959988