FastQCFastQC Report
Tue 15 Nov 2016
SRR1946271.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946271.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33256118
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG109250.012.1364285
TACCGTG79850.011.3025647
ATACCGT96350.010.7328016
TCTATAC208400.010.7172493
CATACAC848550.010.6891263
GTATAGA225550.010.6628371
ACATGAC683950.010.4667648
TATACTG165850.010.3476225
ACACATG839600.010.32918556
CATGACA702900.010.104469
CACATGA808300.010.0606067
GTATATA467700.010.0328081
CTATACT167450.09.7160884
GTGTATG836350.09.4990261
GTATTAG193950.09.4638871
CTATACC166450.09.37896254
TCATACA955650.09.3717072
TATACAG146150.09.3295865
ATCATAC937450.09.1774671
TAATACT264750.09.1290934