Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946395.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27157818 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGACCGC | 5485 | 0.0 | 21.938139 | 94 |
GTCGCGC | 1215 | 0.0 | 13.536408 | 8 |
GTATAGA | 16145 | 0.0 | 11.763717 | 1 |
TGAGCGG | 25820 | 0.0 | 11.505282 | 94 |
ATGGCGC | 17960 | 0.0 | 11.463156 | 94 |
TATACCG | 8660 | 0.0 | 11.449482 | 5 |
TCGCGCG | 1680 | 0.0 | 11.188256 | 9 |
CTGAGCG | 27645 | 0.0 | 10.762757 | 94 |
ACATGAC | 78200 | 0.0 | 10.744159 | 8 |
GAGCGGG | 21160 | 0.0 | 10.729214 | 94 |
CATACAC | 96870 | 0.0 | 10.571903 | 3 |
TATACTG | 11920 | 0.0 | 10.565251 | 5 |
GCGTGTA | 6210 | 0.0 | 10.559006 | 92-93 |
GGCTGGC | 13035 | 0.0 | 10.457393 | 94 |
ACACATG | 96625 | 0.0 | 10.421877 | 6 |
CTAGTAC | 11365 | 0.0 | 10.379813 | 3 |
AGCGGGC | 17525 | 0.0 | 10.379809 | 94 |
CACATGA | 94665 | 0.0 | 10.2802 | 7 |
TCTATAC | 15570 | 0.0 | 10.232842 | 3 |
CAGACCG | 7235 | 0.0 | 10.200032 | 92-93 |