FastQCFastQC Report
Tue 15 Nov 2016
SRR1946318.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946318.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24537618
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG97000.017.7317855
CCGTGAG65200.016.2164219
TACCGTG77550.016.1183917
TCTATAC172000.015.2482393
GAGCGCG12050.015.2089587
TATACTG128850.014.771135
ACCGTGA85600.014.6574818
ATACCGT91050.014.605966
CTATACT125950.013.6956234
CTAGTAC80500.013.3706813
CTATACC136800.013.2965434
CATACAC606600.013.2419993
GTATAGA184500.013.2382751
ACATGAC507350.012.6892158
GTATAGG85100.012.5532651
ACACATG627750.012.5012476
GCGCGCC15150.012.4070199
GTGTATG575200.012.2888561
CATGACA516850.012.2195399
CACATGA610550.012.037537