FastQCFastQC Report
Tue 15 Nov 2016
SRR1946358.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946358.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43371708
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACCGTG112900.016.4388057
TATACCG140500.016.335955
ATACCGT126050.014.9528176
CCGTGAG100100.014.8891569
TATACTG199150.014.713255
TCTATAC261900.014.0800153
CTATACT215450.012.9618034
GTATAGA296450.012.7117781
ACCGTGA132500.012.6236428
CTATACC201400.012.6033664
TAGGCTG114050.011.7118085
TAGTACT243100.011.6037694
CTAGTAC134600.011.5813653
GTGTATG882700.010.9344421
TAATACT343400.010.833884
GTATATA605250.010.8335861
CTAGGCT105350.010.8177784
TATGCTG144350.010.654475
CATACAC957550.010.5595983
ATACTGT197400.010.5243836