FastQCFastQC Report
Tue 15 Nov 2016
SRR1946301.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946301.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19429314
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG65950.015.0356285
TATACTG97500.013.7852735
TACCGTG48650.013.4263837
TCTATAC115700.013.2853963
CATACAC491000.012.4649233
ATACCGT57850.012.4285586
TATACAG91200.012.41875
CCGTGAG46850.012.3371819
CTATACT99950.012.2748974
ACACATG492950.012.211786
GTGTATG470700.011.8513111
ACATGAC400700.011.7274428
GTATAGA131050.011.49491
GTCGCGC7803.45608E-1111.4467348
CATGACA408250.011.3723759
TCATACA555350.011.1052212
CTATACC92300.011.0514224
ACCGTGA61100.010.99809558
CACATGA475950.010.9397047
GTATATA296350.010.8335721