Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946357.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43965774 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 22755 | 0.0 | 14.772047 | 5 |
CTATACT | 23400 | 0.0 | 13.62306 | 4 |
TCTATAC | 27290 | 0.0 | 13.573575 | 3 |
GTATAGG | 14780 | 0.0 | 13.28685 | 1 |
TATACCG | 13160 | 0.0 | 13.234956 | 5 |
CATACAC | 114355 | 0.0 | 13.20738 | 3 |
TATACAG | 20565 | 0.0 | 12.761085 | 5 |
ACACATG | 117825 | 0.0 | 12.4399805 | 6 |
ACATGAC | 96465 | 0.0 | 12.294727 | 8 |
GTGTATG | 108860 | 0.0 | 12.148713 | 1 |
CATGACA | 95820 | 0.0 | 12.058987 | 9 |
CACATGA | 114185 | 0.0 | 11.912075 | 7 |
CTAGTAC | 14660 | 0.0 | 11.817161 | 3 |
GACCGTG | 7095 | 0.0 | 11.779193 | 7 |
GTACTAG | 17305 | 0.0 | 11.755374 | 1 |
TGTAGGG | 18745 | 0.0 | 11.74744 | 2 |
GTATTAG | 25000 | 0.0 | 11.707609 | 1 |
TCATACA | 129290 | 0.0 | 11.657245 | 2 |
GTATAGA | 28835 | 0.0 | 11.584301 | 1 |
ACCGTGC | 5190 | 0.0 | 11.489251 | 8 |