FastQCFastQC Report
Tue 15 Nov 2016
SRR1946282.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946282.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16018298
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG59000.015.4521845
CATACAC444800.014.4774973
ACATGAC308600.014.2982868
CTATACT83750.014.2556374
ATACCGT48500.014.2430236
CATGACA321050.013.7730449
TCTATAC102300.013.7383093
ACACATG453150.013.7093246
GTATAGG56050.013.6882571
TATACTG73950.013.4721775
CACATGA433050.013.4664197
TACCGTG42250.013.3466717
TCATACA486900.013.0712352
GTGTATG442250.012.9952311
GTATATA252000.012.9253311
CTAGTAC55750.012.8155263
ACTGTGC26650.012.5191688
ATCATAC500750.012.5110351
GTATAGA108850.012.3240251
GATTGAG430650.012.2320597