Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946436.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39113990 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 46550 | 0.11901112619806878 | No Hit |
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT | 41616 | 0.10639671381007154 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTGAG | 12225 | 0.0 | 16.223991 | 9 |
TATACCG | 16000 | 0.0 | 15.690551 | 5 |
ACCGTGA | 16315 | 0.0 | 14.173484 | 8 |
ATACCGT | 13710 | 0.0 | 14.022538 | 6 |
TACCGTG | 12915 | 0.0 | 13.3932295 | 7 |
GTATAGA | 27165 | 0.0 | 13.033982 | 1 |
GTCGCGC | 2015 | 0.0 | 12.828806 | 8 |
TCTATAC | 24400 | 0.0 | 12.446774 | 3 |
CTAGTAC | 15675 | 0.0 | 11.816879 | 3 |
CTATACC | 22270 | 0.0 | 10.660716 | 4 |
TGTAGGG | 22390 | 0.0 | 10.645615 | 2 |
CTGAGCG | 15455 | 0.0 | 10.55162 | 94 |
TATACTG | 18150 | 0.0 | 10.542282 | 5 |
TAGACCG | 10260 | 0.0 | 10.538951 | 5 |
GTACTAC | 17350 | 0.0 | 10.457519 | 6 |
CCTAGTA | 17115 | 0.0 | 10.410683 | 2 |
ACATGAC | 142575 | 0.0 | 10.179642 | 8 |
GTATTAG | 19535 | 0.0 | 10.061315 | 1 |
TCGCGCG | 2685 | 0.0 | 9.977569 | 9 |
GTAGGGA | 22085 | 0.0 | 9.962367 | 3 |