Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946411.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38691232 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12260 | 0.0 | 12.041113 | 5 |
GTATAGA | 24375 | 0.0 | 11.785489 | 1 |
CTAGTAC | 14275 | 0.0 | 11.197563 | 3 |
TCTATAC | 21160 | 0.0 | 10.664642 | 3 |
GTCGCGC | 2575 | 0.0 | 10.403692 | 8 |
CCGTGAG | 8325 | 0.0 | 10.334281 | 9 |
TACCGTG | 8655 | 0.0 | 10.262155 | 7 |
ATACCGT | 10255 | 0.0 | 10.174099 | 6 |
TATACTG | 17310 | 0.0 | 10.157855 | 5 |
CATACAC | 143670 | 0.0 | 10.15071 | 3 |
ACCGTGA | 12025 | 0.0 | 9.966554 | 8 |
ACATGAC | 115060 | 0.0 | 9.860587 | 8 |
TCGCGCG | 2880 | 0.0 | 9.794273 | 9 |
ACACATG | 142990 | 0.0 | 9.765077 | 6 |
GTATATA | 54565 | 0.0 | 9.754012 | 1 |
CTATACT | 17755 | 0.0 | 9.71762 | 4 |
GTACTAC | 15145 | 0.0 | 9.681974 | 6 |
TAGGCCG | 4485 | 0.0 | 9.539078 | 5 |
GTGTATG | 134925 | 0.0 | 9.523536 | 1 |
CATGACA | 120650 | 0.0 | 9.464848 | 9 |