FastQCFastQC Report
Tue 15 Nov 2016
SRR1946297.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946297.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41978270
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG216300.015.5413225
CTATACT228000.014.4140824
CATACAC977150.014.16523553
GAGCGCG24500.013.2387017
ACATGAC688550.013.1822968
TATACCG132750.013.1748855
CTGAGCG106450.013.17365294
GTATAGA292950.013.1384961
GTGTATG917400.013.0787831
ACACATG958850.013.0558486
CATGACA700650.012.725749
TCTATAC268600.012.7080193
TAATACT343600.012.6297044
CACATGA912750.012.4682457
TATACAG194600.012.3698835
GCCGTGC43400.012.3469418
GTATAGG148750.012.1467511
TCATACA1101950.012.1271892
ATACTGT221850.012.1205196
GTATATA627650.012.0771341