FastQCFastQC Report
Tue 15 Nov 2016
SRR1946447.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946447.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28516834
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGAGCGG112550.014.44710694
CTGAGCG113300.014.10260294
GTCGCGC20850.013.0745368
GAGCGGG81850.012.86114394
TAGGCTG87150.011.8137265
TATACCG102800.011.6615765
ATACCGT82500.011.5659546
TCGCGCG27200.011.2316679
GCTGTCC75450.010.83912858
TATACTG127950.010.7655825
CTAGGCT86500.010.7068154
TCTATAC159750.010.62373
GTATATA440100.010.5233421
GTATAGA174400.010.5144611
TGATGGC155750.010.50029494
TACCGTG74000.010.1629027
CATACAC997700.010.0932023
GTACTAG117550.010.079681
ACATGAC769200.010.008738
CTAGTAC99500.09.9693963