FastQCFastQC Report
Tue 15 Nov 2016
SRR1946466.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946466.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24974468
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG84050.012.6925715
GTATAGA179500.011.2706111
TATACTG130950.011.1972295
TCTATAC168400.010.6885343
GTATAGG92050.010.6312181
CCGTGCG17750.010.5910659
ATACCGT82600.010.4688566
CTATACT130400.010.37949854
CCGTGAG69800.010.1671579
ACCGTGA85850.010.1274648
TATACAG114950.010.0574445
GACCGTG40700.010.0458627
TACCGTG68050.09.9448167
CATACAC552600.09.9162883
GTATATA367600.09.8550451
GTATTAG153150.09.7690781
GTATTAC114550.09.5698311
TAATACT192550.09.5676224
CTAGTAC83000.09.5124563
CCTAGAC58100.09.4639233