FastQCFastQC Report
Tue 15 Nov 2016
SRR1946430.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946430.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32137374
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG149050.011.1903065
TATACCG98350.010.9875055
GTATAGA200400.010.1344611
GTATATA441150.010.1239961
ACATGAC890400.010.1084598
CATACAC1128000.010.0474463
TCTATAC186150.010.0463323
ACACATG1122800.09.9030546
GTCGCGC12400.09.8497758
ATACCGT84700.09.8166476
GTATTAG174800.09.7629231
CACATGA1089700.09.6520697
CATGACA926200.09.6011039
CTATACT155000.09.427344
GTGTATG1085950.09.4159491
GTATTAT230900.09.2640761
TATACAG140550.09.2262215
TCATACA1232550.09.1418662
TAGACTG85150.09.04908855
ATCATAC1178350.08.91299251