FastQCFastQC Report
Tue 15 Nov 2016
SRR1946391.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946391.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23251680
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGTAC88100.012.4830863
CTGAGCG84950.012.117063594
TATACCG76600.011.9627475
GTATAGA164150.011.8282151
TCTATAC148350.011.2466413
TGAGCGG85700.011.24319394
ATACCGT70800.011.1504816
CCGTGAG61350.010.6467699
TAGTACT177600.010.3999594
TATACTG113350.010.0741825
GTACTAC98300.010.0388366
CTATACT115200.010.0360944
AGACCGC32750.09.759294
CCTAGTA102150.09.7560262
GTATAGG78100.09.7515581
CATACAC713300.09.6790253
ACATGAC534300.09.4809348
TACCGTG58150.09.4547897
CTATACC116400.09.448114
GTATTAT192750.09.43901351