FastQCFastQC Report
Tue 15 Nov 2016
SRR1946383.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946383.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39235992
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC28350.013.9240538
TATACCG140750.012.4872425
GTATAGA268200.012.3785231
ATACCGT115350.011.6517666
TCGCGCG34100.011.3005619
TACCGTG117350.011.2528537
CCGTGAG88950.011.200329
CTAGTAC151700.011.1241633
ACCGTGA128900.010.0622628
TCTATAC216900.09.990793
CTGAGCG359000.09.97701794
GTACTAC158550.09.9293756
GTATTAT326950.09.7371131
ACATGAC1313600.09.6913728
CCTAGTA166650.09.3956412
ACACATG1685650.09.3868326
CATACAC1619650.09.3859293
TGAGCGG346150.09.34252594
CACATGA1632350.09.2959597
AGGTCGC46600.09.2778056