Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946409.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34057394 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACCGTG | 7810 | 0.0 | 12.275173 | 7 |
CCGTGAG | 7575 | 0.0 | 12.102221 | 9 |
TATACCG | 10880 | 0.0 | 11.104772 | 5 |
GTATAGA | 23530 | 0.0 | 11.048926 | 1 |
ATACCGT | 9650 | 0.0 | 10.471066 | 6 |
TATACTG | 16470 | 0.0 | 10.418488 | 5 |
ACCGTGA | 10515 | 0.0 | 10.414517 | 8 |
GACCGTG | 4525 | 0.0 | 10.177849 | 7 |
TAGACCG | 6650 | 0.0 | 10.109271 | 5 |
TCTATAC | 21210 | 0.0 | 9.996054 | 3 |
CTAGTAC | 10650 | 0.0 | 9.931746 | 3 |
GTATAGG | 11215 | 0.0 | 9.767279 | 1 |
GTATTAG | 18970 | 0.0 | 9.739623 | 1 |
GTATATA | 49995 | 0.0 | 9.600992 | 1 |
CTATACT | 16920 | 0.0 | 9.474304 | 4 |
AGACCGT | 6420 | 0.0 | 9.443532 | 6 |
CATACAC | 108805 | 0.0 | 9.358415 | 3 |
TATACAG | 15185 | 0.0 | 9.318738 | 5 |
GTACTAG | 13325 | 0.0 | 9.314372 | 1 |
TAGTACT | 21230 | 0.0 | 9.12306 | 4 |