Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946347.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44654588 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 15390 | 0.0 | 16.771025 | 5 |
TACCGTG | 11410 | 0.0 | 15.752646 | 7 |
TATACTG | 23440 | 0.0 | 15.07554 | 5 |
GAGCGCG | 2800 | 0.0 | 14.916685 | 7 |
TCTATAC | 29925 | 0.0 | 14.898064 | 3 |
CTAGTAC | 14555 | 0.0 | 14.734803 | 3 |
CTATACT | 23915 | 0.0 | 14.167956 | 4 |
ATACCGT | 14725 | 0.0 | 13.83166 | 6 |
GTATAGA | 30845 | 0.0 | 13.689849 | 1 |
CCGTGAG | 12080 | 0.0 | 13.558162 | 9 |
GCGCGCC | 2885 | 0.0 | 13.501269 | 9 |
TATACAG | 20230 | 0.0 | 13.500896 | 5 |
CATACAC | 106695 | 0.0 | 12.962132 | 3 |
CTATACC | 23535 | 0.0 | 12.64199 | 4 |
ACCGTGA | 15355 | 0.0 | 12.591854 | 8 |
AGCGCGC | 4040 | 0.0 | 12.545405 | 8 |
GTATAGG | 15875 | 0.0 | 12.545151 | 1 |
TAGTACT | 28730 | 0.0 | 12.397854 | 4 |
GTGTATG | 101630 | 0.0 | 12.344563 | 1 |
TAGAGCG | 8225 | 0.0 | 12.324047 | 5 |