FastQCFastQC Report
Tue 15 Nov 2016
SRR1946322.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946322.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43034142
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG140100.018.1203235
TACCGTG113150.016.1182677
ATACCGT129950.016.0248456
CATACAC1202750.015.2443413
TCTATAC275200.015.13577653
TATACTG206350.015.0138235
ACATGAC878750.014.9338428
GTACTAG178600.014.7262521
GTATAGA296850.014.6135491
ACACATG1165700.014.5494356
CTATACT224350.014.5427744
CTAGTAC143800.014.4504973
CATGACA901950.014.3404979
CACATGA1122250.014.1317727
GTGTATG1127350.014.1273831
TGAGCGG145200.014.09756594
TCATACA1327550.013.6428862
CTATACC211250.013.3081694
CTGAGCG148200.013.27240294
TAGTACT278550.013.1982844