Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946434.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25556710 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1375 | 0.0 | 10.249362 | 8 |
ACATGAC | 88790 | 0.0 | 10.147588 | 8 |
GTACTAG | 9665 | 0.0 | 10.068832 | 1 |
CATACAC | 119550 | 0.0 | 9.857634 | 3 |
ACACATG | 114080 | 0.0 | 9.808717 | 6 |
CTAGTAC | 8595 | 0.0 | 9.731255 | 3 |
CACATGA | 110800 | 0.0 | 9.683569 | 7 |
GTATAGA | 13715 | 0.0 | 9.666381 | 1 |
CATGACA | 91430 | 0.0 | 9.571975 | 9 |
TATACCG | 7625 | 0.0 | 9.489407 | 5 |
GTATTAT | 20250 | 0.0 | 9.472089 | 1 |
TATACTG | 11125 | 0.0 | 9.460326 | 5 |
GTATAAA | 25160 | 0.0 | 9.436074 | 1 |
GTATTAA | 15775 | 0.0 | 9.417342 | 1 |
GTATATA | 34995 | 0.0 | 9.32318 | 1 |
TCATACA | 125730 | 0.0 | 9.287217 | 2 |
CTATACT | 11055 | 0.0 | 9.180563 | 4 |
GATTGAG | 103115 | 0.0 | 9.157002 | 7 |
GTATTAG | 13080 | 0.0 | 9.09334 | 1 |
GTGTATG | 113790 | 0.0 | 9.035564 | 1 |