FastQCFastQC Report
Tue 15 Nov 2016
SRR1946289.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946289.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32983438
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC332050.10067173713061689No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG106300.014.5511095
TATACTG155400.014.1891165
TACCGTG82200.014.1246037
AGACCGC38450.013.58571794
CTAGTAC103250.013.5696793
CATACAC932900.013.2746783
TCTATAC209450.013.109193
ACATGAC715500.012.7708748
ATACCGT95800.012.75816
CTATACT166000.012.6034474
TATACAG152300.012.5022625
ACACATG916800.012.4700196
CATGACA731100.012.3370649
TAGTACT202750.012.3132054
GTATAGA213000.012.2599171
CCGTGAG81900.012.22388659
GTGTATG889700.012.1740711
CACATGA887250.012.1269327
TGAGCGG82650.011.90033994
TCATACA1025100.011.8389332