Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946278.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22629304 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 885 | 0.0 | 15.400648 | 8 |
CTAGTAC | 7800 | 0.0 | 13.677807 | 3 |
TATACTG | 10300 | 0.0 | 13.597663 | 5 |
TATACCG | 7700 | 0.0 | 13.550255 | 5 |
CCGTGAG | 6125 | 0.0 | 12.430632 | 9 |
CTATACT | 11240 | 0.0 | 12.167795 | 4 |
CATACAC | 54385 | 0.0 | 12.159065 | 3 |
TCGCGCG | 1285 | 0.0 | 12.069662 | 9 |
TAGACCG | 5890 | 0.0 | 11.8892975 | 5 |
TCTATAC | 13935 | 0.0 | 11.838191 | 3 |
ATACCGT | 6465 | 0.0 | 11.558803 | 6 |
ACACATG | 53780 | 0.0 | 11.474353 | 6 |
GTGTATG | 52475 | 0.0 | 11.464246 | 1 |
TAGTACT | 15375 | 0.0 | 11.46308 | 4 |
ACATGAC | 41690 | 0.0 | 11.386067 | 8 |
ACCGTGA | 8420 | 0.0 | 11.219365 | 8 |
GTACTAG | 9570 | 0.0 | 11.21476 | 1 |
GTATAGA | 14705 | 0.0 | 11.203922 | 1 |
GACCGTG | 4705 | 0.0 | 11.187747 | 7 |
AGACCGT | 6180 | 0.0 | 11.179262 | 6 |