FastQCFastQC Report
Tue 15 Nov 2016
SRR1946352.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946352.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86536964
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG287650.014.5087335
TATACTG443550.014.3201435
GTCGCGC40500.014.1431078
CTAGTAC315850.014.0312953
CTATACT460100.013.9279464
CATACAC2407500.013.607283
TCTATAC538250.013.3186943
ACATGAC1679500.012.9879088
ACACATG2346400.012.9653636
CTAGGCT234900.012.7909754
GTATAGG309650.012.7590041
CATGACA1705050.012.6308249
TATACAG403200.012.5862775
TAGTACT586750.012.5858434
CACATGA2257950.012.5838897
GTACTAG389950.012.4446661
GTATAGA575450.012.3679271
TCATACA2638700.012.3235692
GCTGTCC234300.012.2435968
GTGTATG2280950.012.1617471