FastQCFastQC Report
Tue 15 Nov 2016
SRR1946467.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946467.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36199242
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG175150.011.8329185
CTATACT189550.011.281094
TATACCG113450.011.10180955
GTCGCGC16200.011.0239718
GTATATA536350.010.8657961
TCTATAC214350.010.6555593
CATACAC1031050.010.620373
GTATAGA223850.010.5483651
GTACTAG153700.010.5274481
GTATTAG212950.010.4919091
TAGACTG85800.010.3523265
ACATGAC759250.010.3433488
CTAGTAC126100.010.248993
ACACATG1032200.010.1532356
CATGACA777450.09.9744319
GTGTATG977950.09.9465481
CACATGA992100.09.90043457
TAGACCG96250.09.8631145
GCCGTGC39300.09.8059748
TAGTACT238700.09.765464