FastQCFastQC Report
Tue 15 Nov 2016
SRR1946285.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946285.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34197014
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG172650.015.2205295
CTATACT181450.014.5859684
CATACAC947250.014.4265673
TATACCG109750.014.3491035
ACATGAC725950.013.9990698
ACACATG911600.013.6909196
CATGACA748050.013.4211099
TCTATAC214400.013.3528843
GTATAGA220350.013.3001211
TATACAG165050.013.2156015
CACATGA892750.013.0372567
GTGTATG874400.013.0246271
TCATACA1044200.012.8143162
TAGTACT191300.012.7045554
ATCATAC1044050.012.4311421
GTATAGG118300.012.1679461
CTAGTAC101350.012.059583
GTCGCGC14850.012.0283858
GATTGAG834200.011.9518727
GTATATA513800.011.8564941