FastQCFastQC Report
Tue 15 Nov 2016
SRR1946347.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946347.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44654588
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG153900.016.7710255
TACCGTG114100.015.7526467
TATACTG234400.015.075545
GAGCGCG28000.014.9166857
TCTATAC299250.014.8980643
CTAGTAC145550.014.7348033
CTATACT239150.014.1679564
ATACCGT147250.013.831666
GTATAGA308450.013.6898491
CCGTGAG120800.013.5581629
GCGCGCC28850.013.5012699
TATACAG202300.013.5008965
CATACAC1066950.012.9621323
CTATACC235350.012.641994
ACCGTGA153550.012.5918548
AGCGCGC40400.012.5454058
GTATAGG158750.012.5451511
TAGTACT287300.012.3978544
GTGTATG1016300.012.3445631
TAGAGCG82250.012.3240475