Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946274.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21589724 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 7255 | 0.0 | 15.222072 | 5 |
ATACCGT | 5825 | 0.0 | 14.601848 | 6 |
TATACTG | 9605 | 0.0 | 13.454843 | 5 |
TACCGTG | 5355 | 0.0 | 13.163002 | 7 |
CATACAC | 67545 | 0.0 | 12.811157 | 3 |
CTAGTAC | 6200 | 0.0 | 12.736361 | 3 |
TCTATAC | 12455 | 0.0 | 12.680119 | 3 |
ACATGAC | 53035 | 0.0 | 12.528815 | 8 |
ACACATG | 68445 | 0.0 | 12.29643 | 6 |
TAGACTG | 5410 | 0.0 | 12.247998 | 5 |
GTATAGA | 13620 | 0.0 | 12.232655 | 1 |
TATACAG | 9710 | 0.0 | 12.147804 | 5 |
CATGACA | 55085 | 0.0 | 12.028345 | 9 |
CACATGA | 66325 | 0.0 | 11.924222 | 7 |
CTATACT | 10480 | 0.0 | 11.885362 | 4 |
TAGTACT | 12255 | 0.0 | 11.813135 | 4 |
GTATTAG | 11070 | 0.0 | 11.691752 | 1 |
GTGTATG | 64580 | 0.0 | 11.6459055 | 1 |
TCATACA | 74910 | 0.0 | 11.564139 | 2 |
CTATACC | 9525 | 0.0 | 11.448558 | 4 |