Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946423.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 17220606 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 18274 | 0.10611705534636817 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 5605 | 0.0 | 15.36386 | 5 |
ATACCGT | 4930 | 0.0 | 14.126749 | 6 |
CCGTGAG | 4970 | 0.0 | 13.825338 | 9 |
TACCGTG | 4490 | 0.0 | 11.94764 | 7 |
TCTATAC | 10025 | 0.0 | 11.874921 | 3 |
ACCGTGA | 6680 | 0.0 | 11.835574 | 8 |
TATACTG | 8220 | 0.0 | 11.563904 | 5 |
GTATAGA | 10590 | 0.0 | 11.374664 | 1 |
CTATACT | 8120 | 0.0 | 10.95227 | 4 |
GTCGCGC | 750 | 2.4938345E-9 | 10.667047 | 8 |
GACCGTG | 3490 | 0.0 | 10.247355 | 7 |
AGACCGT | 4570 | 0.0 | 10.194041 | 6 |
TAGACCG | 4660 | 0.0 | 10.098084 | 5 |
GTATATA | 25925 | 0.0 | 10.091381 | 1 |
GTATTAG | 8685 | 0.0 | 9.914615 | 1 |
TCGGGCA | 5545 | 0.0 | 9.827684 | 94 |
GTGTTAG | 5710 | 0.0 | 9.806306 | 1 |
CTAGTAC | 6285 | 0.0 | 9.657818 | 3 |
CTAACGG | 6600 | 0.0 | 9.62601 | 8 |
GTACTAG | 8305 | 0.0 | 9.518406 | 1 |