Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946288.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25266048 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 11960 | 0.0 | 12.029083 | 5 |
GTCGCGC | 845 | 1.5097612E-10 | 10.569215 | 8 |
CATACAC | 71270 | 0.0 | 10.15303 | 3 |
GTATTAG | 14440 | 0.0 | 10.037483 | 1 |
ACTGTGC | 3795 | 0.0 | 10.032728 | 8 |
ACATGAC | 54435 | 0.0 | 9.94764 | 8 |
GTATATA | 38535 | 0.0 | 9.879488 | 1 |
TCTATAC | 14925 | 0.0 | 9.860384 | 3 |
GTATAGA | 16230 | 0.0 | 9.829297 | 1 |
ACACATG | 71205 | 0.0 | 9.697287 | 6 |
CTATACT | 12620 | 0.0 | 9.575221 | 4 |
CACATGA | 68060 | 0.0 | 9.565696 | 7 |
CTAGTAC | 7705 | 0.0 | 9.519536 | 3 |
CATGACA | 56295 | 0.0 | 9.477059 | 9 |
TATACAG | 11685 | 0.0 | 9.374962 | 5 |
GTACTAG | 8620 | 0.0 | 9.280747 | 1 |
ATACTGT | 13545 | 0.0 | 9.265551 | 6 |
TATACCG | 7670 | 0.0 | 9.256011 | 5 |
GTGTATG | 67785 | 0.0 | 9.101446 | 1 |
GACCGTG | 3940 | 0.0 | 8.947955 | 7 |