FastQCFastQC Report
Tue 15 Nov 2016
SRR1946293.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946293.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22055726
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG105550.013.9816345
CATACAC505650.013.9234973
CTATACT111700.013.8850454
TATACCG71650.013.6437475
ACACATG499200.013.2560356
ACATGAC437550.013.1903488
TATACAG97900.012.8658555
CACATGA484900.012.7164887
TCTATAC128450.012.6964383
CATGACA457850.012.6363139
GTGTATG490050.012.6209991
GTATATA318050.012.3574781
TAGGCTG63750.012.1643895
TCATACA566850.012.1549262
TATACTA192800.012.0909715
ATCATAC528900.012.0410131
GTATAGG76250.012.0374231
TAATACT171700.011.7975964
CTAGGCT53500.011.6838074
GCCGTGC25400.011.657158