Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946438.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28942000 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 41777 | 0.14434731532029577 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGG | 7040 | 0.0 | 17.823137 | 94 |
CTGAGCG | 10950 | 0.0 | 17.596052 | 94 |
TGAGCGG | 10290 | 0.0 | 16.806528 | 94 |
AGACCGC | 3610 | 0.0 | 14.059248 | 94 |
GATGGCG | 9700 | 0.0 | 13.613825 | 94 |
TGATGGC | 15415 | 0.0 | 11.615209 | 94 |
TCTGAGC | 19375 | 0.0 | 11.496938 | 94 |
GTCGCGC | 1435 | 0.0 | 11.135701 | 8 |
ACATGAC | 111030 | 0.0 | 10.798431 | 8 |
TATACTG | 13020 | 0.0 | 10.399212 | 5 |
ACACATG | 137250 | 0.0 | 10.390521 | 6 |
GTATAGA | 16890 | 0.0 | 10.300452 | 1 |
CACATGA | 133595 | 0.0 | 10.262912 | 7 |
CATACAC | 140725 | 0.0 | 10.259511 | 3 |
CATGACA | 115380 | 0.0 | 10.240527 | 9 |
CTATACT | 13585 | 0.0 | 10.174348 | 4 |
TATACCG | 9035 | 0.0 | 10.094679 | 5 |
AGCGGGC | 4115 | 0.0 | 9.935619 | 94 |
CTAGTAC | 9330 | 0.0 | 9.624316 | 3 |
GCTGTCC | 6750 | 0.0 | 9.608727 | 8 |