Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946408.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41081668 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12960 | 0.0 | 10.556129 | 5 |
GTACTAG | 15800 | 0.0 | 10.087232 | 1 |
CATACAC | 143230 | 0.0 | 9.787609 | 3 |
ACACATG | 134535 | 0.0 | 9.771035 | 6 |
ACATGAC | 106000 | 0.0 | 9.6882515 | 8 |
TATACTG | 19430 | 0.0 | 9.484839 | 5 |
TATACAG | 18455 | 0.0 | 9.476448 | 5 |
GTATATA | 56990 | 0.0 | 9.404497 | 1 |
GTATAGA | 25865 | 0.0 | 9.379217 | 1 |
GTGTATG | 135510 | 0.0 | 9.357051 | 1 |
CACATGA | 127695 | 0.0 | 9.277853 | 7 |
TCTATAC | 23920 | 0.0 | 9.178225 | 3 |
CATGACA | 110675 | 0.0 | 9.115999 | 9 |
CTAGTAC | 13465 | 0.0 | 9.112492 | 3 |
TAGTACT | 25060 | 0.0 | 9.004562 | 4 |
TCATACA | 154615 | 0.0 | 8.969901 | 2 |
GTATTAT | 29615 | 0.0 | 8.842455 | 1 |
ATCATAC | 153440 | 0.0 | 8.83049 | 1 |
GATTGAG | 127580 | 0.0 | 8.807355 | 7 |
CTATACT | 19535 | 0.0 | 8.783788 | 4 |