Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946285.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34197014 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 17265 | 0.0 | 15.220529 | 5 |
CTATACT | 18145 | 0.0 | 14.585968 | 4 |
CATACAC | 94725 | 0.0 | 14.426567 | 3 |
TATACCG | 10975 | 0.0 | 14.349103 | 5 |
ACATGAC | 72595 | 0.0 | 13.999069 | 8 |
ACACATG | 91160 | 0.0 | 13.690919 | 6 |
CATGACA | 74805 | 0.0 | 13.421109 | 9 |
TCTATAC | 21440 | 0.0 | 13.352884 | 3 |
GTATAGA | 22035 | 0.0 | 13.300121 | 1 |
TATACAG | 16505 | 0.0 | 13.215601 | 5 |
CACATGA | 89275 | 0.0 | 13.037256 | 7 |
GTGTATG | 87440 | 0.0 | 13.024627 | 1 |
TCATACA | 104420 | 0.0 | 12.814316 | 2 |
TAGTACT | 19130 | 0.0 | 12.704555 | 4 |
ATCATAC | 104405 | 0.0 | 12.431142 | 1 |
GTATAGG | 11830 | 0.0 | 12.167946 | 1 |
CTAGTAC | 10135 | 0.0 | 12.05958 | 3 |
GTCGCGC | 1485 | 0.0 | 12.028385 | 8 |
GATTGAG | 83420 | 0.0 | 11.951872 | 7 |
GTATATA | 51380 | 0.0 | 11.856494 | 1 |