FastQCFastQC Report
Tue 15 Nov 2016
SRR1946376.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946376.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21456502
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG74850.016.3255835
TATACTG100400.015.6350755
CATACAC553400.014.3952013
GTATAGA145700.013.988261
CTAGTAC78350.013.91669753
ACATGAC438600.013.5981618
TCTATAC136900.013.5949913
ACACATG540400.013.5673946
CTATACT106600.013.4471364
TACCGTG56000.013.2603887
GTGTATG525750.013.1963421
CATGACA448550.013.1917399
TCATACA602050.012.997772
ATACCGT66500.012.8628426
CACATGA524400.012.8341627
GTATTAG122900.012.7917491
GTACTAG94600.012.5882311
GTACTAC85350.012.5550526
TATACAG90100.012.51911455
GATTGAG503800.012.3420937