FastQCFastQC Report
Tue 15 Nov 2016
SRR1946346.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946346.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45217340
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC522720.1156016696249713No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG162250.018.0470075
ATACCGT139900.016.3686456
TACCGTG127750.016.3459517
GTCGCGC19050.016.2578078
TCTATAC286450.015.513453
TATACTG218650.015.2375165
CCGTGAG118900.014.8000249
CATACAC1463800.014.2077473
TATACAG207850.014.110275
ACCGTGA160450.014.0090548
CTATACT226300.013.8308394
ACATGAC1200550.013.7000078
GTATAGA303350.013.5624851
ACACATG1493600.013.5285216
CACATGA1437950.013.2786837
CATGACA1221950.013.2757479
CTAGTAC149400.013.129043
GTGTATG1390200.012.9221061
TCATACA1594750.012.8851532
CTAGGCT122600.012.8604474