Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946369.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44840442 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 15965 | 0.0 | 17.610113 | 5 |
TACCGTG | 12715 | 0.0 | 16.38655 | 7 |
ATACCGT | 14530 | 0.0 | 15.662993 | 6 |
TCTATAC | 28965 | 0.0 | 15.103738 | 3 |
GTCGCGC | 2085 | 0.0 | 14.180634 | 8 |
TATACTG | 22015 | 0.0 | 14.071147 | 5 |
CTAGGCT | 11240 | 0.0 | 14.031351 | 4 |
CTATACT | 22615 | 0.0 | 13.989101 | 4 |
CTAGTAC | 15085 | 0.0 | 13.9715 | 3 |
CCGTGAG | 11760 | 0.0 | 13.967446 | 9 |
TATACAG | 19065 | 0.0 | 13.491119 | 5 |
GTATAGA | 29835 | 0.0 | 13.462982 | 1 |
ACCGTGA | 15370 | 0.0 | 13.312934 | 8 |
CATACAC | 117495 | 0.0 | 13.103777 | 3 |
ACATGAC | 86410 | 0.0 | 12.85569 | 8 |
CTATACC | 24075 | 0.0 | 12.809305 | 4 |
GCTGTCC | 11905 | 0.0 | 12.772525 | 8 |
TAGGCTG | 14855 | 0.0 | 12.733172 | 5 |
TAGTACT | 28645 | 0.0 | 12.617358 | 4 |
ACACATG | 115645 | 0.0 | 12.598922 | 6 |