FastQCFastQC Report
Tue 15 Nov 2016
SRR1946316.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946316.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21459044
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTGCG14750.017.8403539
TATACCG72300.016.7045065
TATACTG101800.014.9105465
GTCGCGC7800.013.856098
TCTATAC134400.013.8143933
TAGACCG44950.013.8001265
CTATACT109250.013.5956374
ATACCGT62300.013.4260896
CATACAC578500.013.3658483
TACCGTG52700.013.1965247
AGACCGT45650.013.0731576
ACACATG566650.012.7543696
ACATGAC453700.012.7288898
GTGTATG554950.012.4663491
CATGACA459100.012.4256429
TAGTACT129550.012.4085964
TACACTG62200.012.3150465
GTATAGA140850.012.29608251
GTATTAG123450.012.0849261
CACATGA549600.012.063937