FastQCFastQC Report
Tue 15 Nov 2016
SRR1946406.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946406.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40821526
Sequences flagged as poor quality0
Sequence length100
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG131950.011.5797835
ATACCGT114500.011.2056696
GTATAGA253650.010.6949991
TACCGTG109550.010.6816777
CTAGTAC124400.010.61943153
GTATATA532850.010.4115851
CATACAC1311900.010.2131433
CTATACT181100.010.2020844
ACACATG1271000.09.9357996
TCTATAC238300.09.8444593
TATACTG182000.09.8160935
ACATGAC964400.09.6935248
CACATGA1198450.09.4699947
GTATTAT283050.09.4678541
TAGTACT232400.09.4470354
TCATACA1413750.09.441122
GTATAGG138850.09.379371
GTGTATG1223600.09.3754081
GTATTAG194350.09.1684191
ATCATAC1395050.09.1162731