FastQCFastQC Report
Tue 15 Nov 2016
SRR1946279.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946279.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34138734
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG163600.015.286485
TATACCG109350.014.9602775
CATACAC966050.014.1310643
ACATGAC790150.013.7356448
CTATACT172000.013.6106674
ACACATG951650.013.4847716
CATGACA810900.013.2209329
GTGTATG927800.013.1334991
CACATGA921250.012.9906667
GTATAGA226100.012.9426991
TCTATAC210850.012.93100553
CCGTGCC25900.012.8843549
CCGTGAG84100.012.686279
CTAGTAC105850.012.6126223
GATTGAG846250.012.5200417
TCATACA1077350.012.4722942
TATACAG158000.012.3775
GTCGCGC12300.012.2286778
TAGACCG81400.012.1853285
ATCATAC1043350.012.1749941