Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946338.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 56786770 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 18140 | 0.0 | 15.927444 | 5 |
TATACTG | 27955 | 0.0 | 15.410549 | 5 |
CTATACT | 28655 | 0.0 | 14.067376 | 4 |
TCTATAC | 34060 | 0.0 | 13.752345 | 3 |
CATACAC | 145460 | 0.0 | 13.504012 | 3 |
TATACAG | 25975 | 0.0 | 13.365868 | 5 |
TACCGTG | 14360 | 0.0 | 13.282642 | 7 |
CTAGTAC | 18080 | 0.0 | 12.966667 | 3 |
GTATAGA | 35990 | 0.0 | 12.749483 | 1 |
ACATGAC | 113500 | 0.0 | 12.653552 | 8 |
ACACATG | 152860 | 0.0 | 12.631649 | 6 |
GTGTATG | 135400 | 0.0 | 12.5069 | 1 |
ATACCGT | 16315 | 0.0 | 12.353281 | 6 |
CACATGA | 144980 | 0.0 | 12.151671 | 7 |
CATGACA | 116280 | 0.0 | 12.13286 | 9 |
TAGGCTG | 18105 | 0.0 | 12.040035 | 5 |
GTATATA | 79680 | 0.0 | 11.93044 | 1 |
GTATAGG | 20220 | 0.0 | 11.881311 | 1 |
TCATACA | 163900 | 0.0 | 11.84421 | 2 |
ATCATAC | 159125 | 0.0 | 11.540337 | 1 |