Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946469.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 42651084 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 22505 | 0.0 | 12.884561 | 5 |
CTATACT | 23430 | 0.0 | 12.817166 | 4 |
TATACCG | 13775 | 0.0 | 12.5209675 | 5 |
TCTATAC | 28055 | 0.0 | 12.077817 | 3 |
TAGACTG | 10110 | 0.0 | 11.807177 | 5 |
CCGTGCG | 3100 | 0.0 | 11.673598 | 9 |
TATACAG | 23565 | 0.0 | 11.407541 | 5 |
CATACAC | 85995 | 0.0 | 11.350807 | 3 |
GTATAGG | 15815 | 0.0 | 10.915351 | 1 |
GTATAGA | 29535 | 0.0 | 10.781832 | 1 |
GTATATA | 62560 | 0.0 | 10.638994 | 1 |
ACACATG | 86070 | 0.0 | 10.636571 | 6 |
TAGACCG | 10575 | 0.0 | 10.621381 | 5 |
ACATGAC | 70340 | 0.0 | 10.529868 | 8 |
ACCGTGC | 6005 | 0.0 | 10.408968 | 8 |
CATGACA | 71245 | 0.0 | 10.396269 | 9 |
GTATTAG | 30335 | 0.0 | 10.3734455 | 1 |
TAGTACT | 25010 | 0.0 | 10.353838 | 4 |
GTGTATG | 82375 | 0.0 | 10.078367 | 1 |
TAGACAG | 12880 | 0.0 | 10.070631 | 5 |