Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946312.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20006150 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 22380 | 0.11186560132759177 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 7490 | 0.0 | 15.497915 | 5 |
ATACCGT | 6470 | 0.0 | 14.67173 | 6 |
TACCGTG | 5920 | 0.0 | 14.5264435 | 7 |
CCGTGAG | 5125 | 0.0 | 14.303924 | 9 |
TCTATAC | 12690 | 0.0 | 14.001414 | 3 |
ACATGAC | 60390 | 0.0 | 13.057338 | 8 |
CATACAC | 68310 | 0.0 | 12.84012 | 3 |
CATGACA | 62640 | 0.0 | 12.550721 | 9 |
CTATACC | 10200 | 0.0 | 12.534599 | 4 |
GTATAGA | 12920 | 0.0 | 12.460251 | 1 |
ACACATG | 73610 | 0.0 | 12.302096 | 6 |
CACATGA | 70770 | 0.0 | 12.284357 | 7 |
CTAGTAC | 6670 | 0.0 | 12.121164 | 3 |
ACCGTGA | 7145 | 0.0 | 11.970076 | 8 |
TATACTG | 8865 | 0.0 | 11.821817 | 5 |
TCATACA | 75415 | 0.0 | 11.755082 | 2 |
GTGTATG | 66345 | 0.0 | 11.685535 | 1 |
GTATAGG | 6690 | 0.0 | 11.468976 | 1 |
CTATACT | 9720 | 0.0 | 11.461034 | 4 |
ATCATAC | 76295 | 0.0 | 11.30914 | 1 |