Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946441.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26316258 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGAGCGG | 10425 | 0.0 | 23.03567 | 94 |
GAGCGGG | 6800 | 0.0 | 19.420187 | 94 |
CTGAGCG | 11595 | 0.0 | 18.846825 | 94 |
AGACCGC | 4210 | 0.0 | 17.97214 | 94 |
GATGGCG | 9205 | 0.0 | 14.039928 | 94 |
TGATGGC | 16020 | 0.0 | 13.699677 | 94 |
TATACCG | 8590 | 0.0 | 13.135274 | 5 |
GTCGCGC | 1385 | 0.0 | 12.895117 | 8 |
GTATAGA | 17595 | 0.0 | 12.426769 | 1 |
CTAGTAC | 9525 | 0.0 | 12.141957 | 3 |
TCTGAGC | 20565 | 0.0 | 11.220847 | 92-93 |
TACCGTG | 7080 | 0.0 | 11.086795 | 7 |
CCGTGAG | 6035 | 0.0 | 10.9807 | 9 |
GGCTGGC | 3780 | 0.0 | 10.939851 | 82-83 |
TCGCGCG | 1730 | 0.0 | 10.86681 | 9 |
TATACTG | 12690 | 0.0 | 10.854931 | 5 |
TCTATAC | 15410 | 0.0 | 10.799887 | 3 |
GTACTAC | 10635 | 0.0 | 10.563163 | 6 |
TAGTACT | 18290 | 0.0 | 10.53874 | 4 |
ACATGAC | 80695 | 0.0 | 10.483767 | 8 |