FastQCFastQC Report
Tue 15 Nov 2016
SRR1946453.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946453.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31983250
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGAGCG83700.016.46924494
GTCGCGC14100.014.6666518
TATACCG102400.011.0634845
TATACTG151350.011.0571295
GTATAGA199250.011.0468141
GTATATA442950.010.6496591
TCGCGCG19650.010.5240319
TCTGAGC174050.010.46088594
TGAGCGG80800.010.42253194
GTATTAG185950.010.066451
TATACAG139050.010.0406145
ACATGAC989900.09.8709868
CATACAC1219650.09.8398933
ACACATG1247200.09.8026866
TACCGTG78950.09.7647
GTATTAC135250.09.6671171
TAGACTG77300.09.6084295
TCTATAC194000.09.5955143
GTATTAT238550.09.5620671
CACATGA1192250.09.5329017