FastQCFastQC Report
Tue 15 Nov 2016
SRR1946341.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946341.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47479116
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG140700.015.7089445
TATACTG236950.014.4770765
CTATACT237750.013.7179594
TCTATAC278450.013.5835423
CATACAC1373400.013.4009553
CTAGTAC155550.013.1836813
GTATAGA296850.012.9583311
GTATAGG155900.012.8642361
TATACAG216500.012.8100195
ACATGAC1050200.012.77981958
ACACATG1374450.012.7522936
CTAGGCT120900.012.498414
ATACCGT133050.012.4504896
CATGACA1070400.012.3369759
TAGACCG111900.012.3292715
CACATGA1330300.012.3253687
GTGTATG1324500.012.2340251
GTATATA659500.012.1853351
TACCGTG115050.012.1142467
TCATACA1505000.012.0077672