Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946276.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43490108 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 22160 | 0.0 | 14.929156 | 5 |
TATACCG | 14765 | 0.0 | 14.895144 | 5 |
CTATACT | 22920 | 0.0 | 14.027949 | 4 |
TCTATAC | 27505 | 0.0 | 13.569428 | 3 |
CATACAC | 104315 | 0.0 | 13.387781 | 3 |
ACACATG | 104575 | 0.0 | 12.869435 | 6 |
GTGTATG | 99405 | 0.0 | 12.791083 | 1 |
ACATGAC | 79830 | 0.0 | 12.496625 | 8 |
CATGACA | 80205 | 0.0 | 12.320966 | 9 |
GTATAGG | 15615 | 0.0 | 12.179525 | 1 |
CACATGA | 99745 | 0.0 | 12.163946 | 7 |
TACCGTG | 10845 | 0.0 | 12.132152 | 7 |
CTAGTAC | 13145 | 0.0 | 11.979451 | 3 |
TAGTACT | 24985 | 0.0 | 11.87142 | 4 |
TCATACA | 116315 | 0.0 | 11.804526 | 2 |
TAATACT | 34550 | 0.0 | 11.646045 | 4 |
GTATAGA | 30620 | 0.0 | 11.622715 | 1 |
ATCATAC | 116415 | 0.0 | 11.370966 | 1 |
GTATTAG | 26580 | 0.0 | 11.370277 | 1 |
GATTGAG | 98660 | 0.0 | 11.326093 | 7 |