FastQCFastQC Report
Tue 15 Nov 2016
SRR1946292.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946292.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30552796
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG101550.015.7356515
TATACTG143400.014.6829925
CTATACT152250.014.0764534
CATACAC713400.013.8018273
TCTATAC185300.013.6455983
TACCGTG77150.013.5848457
GCCGTGC29100.013.4051248
ATACCGT87450.013.3283866
GTATAGA188650.013.1486041
GTATATA446650.012.8985211
ACACATG722100.012.8414916
GTCGCGC13650.012.7395718
ACATGAC495300.012.6013038
GTGTATG677800.012.5204521
TATACAG135200.012.5144435
CTAGGCT77500.012.4925554
TAGTACT165900.012.2100274
CACATGA693750.012.2010297
CATGACA516800.011.99521359
TCATACA815550.011.9867852