FastQCFastQC Report
Tue 15 Nov 2016
SRR1946314.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946314.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30468060
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC19450.017.6362178
TATACCG106150.014.343665
TATACTG137350.013.9936055
TCTATAC181650.013.9218173
CTATACT140250.013.7748854
TCGCGCG27900.013.6421339
CCGTGAG86700.013.603679
TACCGTG101750.013.3926927
ATACCGT88650.013.2517996
GTATAGA191700.013.0635981
CTAGTAC114950.012.9628153
AGGTCGC31700.012.4518426
CTAGGCT86450.012.3970644
CATACAC735350.012.3946063
ACCGTGA119650.012.0959568
GTGTATG702800.012.0429051
ACATGAC536700.012.029778
TAGTACT202250.011.9227894
ACACATG720750.011.8463326
TATACAG124100.011.73883155