Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946404.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18069470 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 6150 | 0.0 | 12.534636 | 5 |
GAGCGCG | 950 | 0.0 | 11.871532 | 7 |
CTAGTAC | 5865 | 0.0 | 11.781276 | 3 |
CCGTGAG | 4625 | 0.0 | 11.582862 | 9 |
GTATAGA | 12865 | 0.0 | 11.258234 | 1 |
GTATAGG | 6040 | 0.0 | 11.211272 | 1 |
GTACTAG | 8755 | 0.0 | 11.011007 | 1 |
TATACTG | 9250 | 0.0 | 10.92546 | 5 |
TACCGTG | 4740 | 0.0 | 10.905196 | 7 |
ATACCGT | 5530 | 0.0 | 10.707335 | 6 |
ACCGTGA | 5925 | 0.0 | 10.70695 | 8 |
TCTATAC | 11965 | 0.0 | 10.567751 | 3 |
GTATTAG | 10780 | 0.0 | 10.556645 | 1 |
CTATACT | 9125 | 0.0 | 10.456977 | 4 |
CATACAC | 55150 | 0.0 | 10.423748 | 3 |
ACATGAC | 45760 | 0.0 | 10.392376 | 8 |
TATACAG | 8820 | 0.0 | 10.392237 | 5 |
GTACTAC | 6945 | 0.0 | 10.082076 | 6 |
ACACATG | 54215 | 0.0 | 10.054826 | 6 |
CATGACA | 46710 | 0.0 | 10.030165 | 9 |