Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946380.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 32726892 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTGAG | 8435 | 0.0 | 13.872281 | 9 |
TATACCG | 10850 | 0.0 | 12.300634 | 5 |
TACCGTG | 7925 | 0.0 | 11.978021 | 7 |
ATACCGT | 8505 | 0.0 | 11.824362 | 6 |
CTAGTAC | 13685 | 0.0 | 11.403681 | 3 |
TAGACCG | 8260 | 0.0 | 11.264815 | 5 |
ACCGTGA | 11900 | 0.0 | 11.254621 | 8 |
GTATAGA | 20670 | 0.0 | 10.829128 | 1 |
TCTATAC | 17480 | 0.0 | 10.568245 | 3 |
AGACCGT | 8545 | 0.0 | 10.394127 | 6 |
GACCGTG | 6925 | 0.0 | 10.382564 | 7 |
GTATTAG | 16020 | 0.0 | 10.097711 | 1 |
GTCGCGC | 1760 | 0.0 | 9.879205 | 8 |
GTACTAC | 14395 | 0.0 | 9.859015 | 6 |
CCTAGTA | 14790 | 0.0 | 9.791932 | 2 |
AGCGGGC | 23635 | 0.0 | 9.5262 | 94 |
GTACTAG | 17455 | 0.0 | 9.375326 | 1 |
CTATACT | 14525 | 0.0 | 9.352795 | 4 |
AGACCGA | 14270 | 0.0 | 9.190096 | 94 |
ACATGAC | 105135 | 0.0 | 9.167507 | 8 |