FastQCFastQC Report
Tue 15 Nov 2016
SRR1946367.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946367.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40333920
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG150750.018.5269955
TACCGTG127700.017.0523227
TCTATAC270350.016.16623
CCGTGAG106550.016.0778589
ATACCGT143750.015.735156
TATACTG202950.015.6120535
ACCGTGA139400.014.8143828
CTATACT208450.014.525164
GTATAGA287250.014.3451181
CTATACC224950.013.981444
GTCGCGC15350.013.7593468
CATACAC1084850.013.59631253
TATACAG175900.013.5296785
GTATAGG148400.012.9811911
CTAGTAC132050.012.9759473
ACACATG1036900.012.8577816
GTGTATG1022600.012.8146661
GTATATA569150.012.3170481
TCATACA1189800.012.2481092
ACATGAC799450.012.2466318