Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946289.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 32983438 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 33205 | 0.10067173713061689 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10630 | 0.0 | 14.551109 | 5 |
TATACTG | 15540 | 0.0 | 14.189116 | 5 |
TACCGTG | 8220 | 0.0 | 14.124603 | 7 |
AGACCGC | 3845 | 0.0 | 13.585717 | 94 |
CTAGTAC | 10325 | 0.0 | 13.569679 | 3 |
CATACAC | 93290 | 0.0 | 13.274678 | 3 |
TCTATAC | 20945 | 0.0 | 13.10919 | 3 |
ACATGAC | 71550 | 0.0 | 12.770874 | 8 |
ATACCGT | 9580 | 0.0 | 12.7581 | 6 |
CTATACT | 16600 | 0.0 | 12.603447 | 4 |
TATACAG | 15230 | 0.0 | 12.502262 | 5 |
ACACATG | 91680 | 0.0 | 12.470019 | 6 |
CATGACA | 73110 | 0.0 | 12.337064 | 9 |
TAGTACT | 20275 | 0.0 | 12.313205 | 4 |
GTATAGA | 21300 | 0.0 | 12.259917 | 1 |
CCGTGAG | 8190 | 0.0 | 12.2238865 | 9 |
GTGTATG | 88970 | 0.0 | 12.174071 | 1 |
CACATGA | 88725 | 0.0 | 12.126932 | 7 |
TGAGCGG | 8265 | 0.0 | 11.900339 | 94 |
TCATACA | 102510 | 0.0 | 11.838933 | 2 |