FastQCFastQC Report
Tue 15 Nov 2016
SRR1946366.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946366.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37842500
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG189850.022.153155
TACCGTG167900.021.4673587
CCGTGAG151650.021.2317879
ATACCGT174450.021.2248336
ACCGTGA184000.018.6979458
TCTATAC302300.018.60353
CTATACC255850.016.8795624
CTAGTAC156100.016.6603013
GTATAGA307300.016.0079061
GTCGCGC16600.015.5511438
GTACTAG233500.014.5077081
CTATACT193400.014.41745954
GTACTAC173850.014.2257176
TATACTG184850.014.1948395
TACTAGG251850.013.6080692
CCTAGTA179650.013.5891322
TAGTACT339550.012.8016534
CTAGGCT97050.012.7693024
TAGGATG281250.012.7508445
GAGCGCG20400.012.6532077