FastQCFastQC Report
Tue 15 Nov 2016
SRR1946445.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946445.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28295618
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC377440.13339167923457265No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGAGCGG107050.015.01366794
CTGAGCG112800.014.45665394
AGACCGG65050.013.72630594
GACCGTG55750.010.623127
TAGACCG66800.010.486525
GTATAGA167850.010.3647671
GGCTGGC55850.010.180982-83
TATACTG125600.010.1063835
ACATGAC1017750.09.9380398
CATACAC1220300.09.8125453
ACACATG1221450.09.8090966
TCTGAGC198350.09.80879194
GTATTAG147000.09.7877591
TGGCGCG54900.09.75842894
TATACCG83350.09.758035
AGACCGT69950.09.7435046
AGGCGTG47950.09.70346690-91
CACATGA1186700.09.6287617
CATGACA1036750.09.5019219
GTACTAG115400.09.4935651