Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946377.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21387446 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 7540 | 0.0 | 15.770135 | 5 |
TATACTG | 10555 | 0.0 | 15.540086 | 5 |
CTATACT | 11145 | 0.0 | 15.265629 | 4 |
TCTATAC | 13865 | 0.0 | 14.372498 | 3 |
GTCGCGC | 1085 | 0.0 | 13.861381 | 8 |
GAGCGCG | 1305 | 0.0 | 13.685458 | 7 |
GTATAGA | 14675 | 0.0 | 13.503223 | 1 |
TACCGTG | 5570 | 0.0 | 13.3317795 | 7 |
GTGTATG | 53125 | 0.0 | 13.219145 | 1 |
CATACAC | 56235 | 0.0 | 13.1965885 | 3 |
ATACCGT | 6710 | 0.0 | 12.957925 | 6 |
TAATACT | 18060 | 0.0 | 12.69955 | 4 |
ACATGAC | 40350 | 0.0 | 12.544645 | 8 |
ATAATAC | 18415 | 0.0 | 12.5057745 | 3 |
ACACATG | 54410 | 0.0 | 12.34354 | 6 |
ATTATAC | 18100 | 0.0 | 12.333924 | 3 |
TACACAG | 7090 | 0.0 | 12.064557 | 5 |
CATGACA | 41755 | 0.0 | 11.987465 | 9 |
GTATTAT | 17990 | 0.0 | 11.983062 | 1 |
TAGACTG | 5230 | 0.0 | 11.862016 | 5 |