FastQCFastQC Report
Tue 15 Nov 2016
SRR1946428.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946428.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35686792
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC19000.013.84538658
GTATAGA218900.011.9408291
TATACCG124550.011.4297445
CGCCGTA57700.010.85737794
TATACTG162450.010.4695125
ACATGAC1099250.010.4100178
CTAGGCT105100.010.2819934
GTATATA472500.010.26794051
CTATACT163150.010.2233554
CATACAC1393200.010.1783663
TATACAG146450.010.07344155
TCGCGCG27050.010.0723219
ACACATG1390400.010.0140496
CATGACA1152300.09.9714829
CACATGA1346650.09.9486927
TCTATAC201250.09.8759023
GCTGTCC94200.09.8738148
GTATTAG183500.09.5304261
GTGTATG1334300.09.4918211
CTGTCCC119250.09.4541329