FastQCFastQC Report
Tue 15 Nov 2016
SRR1946410.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946410.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26701372
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC20900.013.0429898
GCTGTCC74200.012.2249998
TATACCG92850.011.8988755
TAGGCTG87700.011.7935085
CTAGGCT87600.011.2164134
TATACTG118800.010.7243955
TAGGCGG74100.010.7221114
CTAGTAC95350.010.6992493
ACATGAC894250.010.6534498
AGGTCGC31450.010.6099386
CATACAC1061900.010.4305183
ACACATG1076050.010.3162666
TACCGTG74650.010.2613677
CACATGA1038650.010.2300747
CATGACA937650.010.182959
TCGCGCG25950.010.1450729
CGCCTAG81650.010.1341991
GTATAGA155600.010.1220421
GTACTAC95200.010.0709016
CTGTCCC102950.010.0461769