FastQCFastQC Report
Tue 15 Nov 2016
SRR1946438.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946438.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28942000
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC417770.14434731532029577No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGG70400.017.82313794
CTGAGCG109500.017.59605294
TGAGCGG102900.016.80652894
AGACCGC36100.014.05924894
GATGGCG97000.013.61382594
TGATGGC154150.011.61520994
TCTGAGC193750.011.49693894
GTCGCGC14350.011.1357018
ACATGAC1110300.010.7984318
TATACTG130200.010.3992125
ACACATG1372500.010.3905216
GTATAGA168900.010.3004521
CACATGA1335950.010.2629127
CATACAC1407250.010.2595113
CATGACA1153800.010.2405279
CTATACT135850.010.1743484
TATACCG90350.010.0946795
AGCGGGC41150.09.93561994
CTAGTAC93300.09.6243163
GCTGTCC67500.09.6087278