FastQCFastQC Report
Tue 15 Nov 2016
SRR1946303.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946303.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23140654
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG117700.016.889385
CTATACT120850.015.5581824
TATACCG84000.015.2173635
CATACAC610450.014.2913543
GTCGCGC14600.014.1618058
ACATGAC488350.014.0969528
TCTATAC144050.014.031393
CTAGGCT63950.013.7450574
ACACATG633100.013.3011486
CATGACA511700.013.19648559
GTATATA359300.013.115211
CACATGA606000.013.1049037
GTATAGA149550.013.0635151
GTGTATG583200.012.9394071
TCATACA672300.012.7178922
TAGGCTG70800.012.6779755
TCGCGCG17600.012.5487989
ATCATAC667650.012.5013891
GTATTAG129100.012.4709131
TATACAG108450.012.3499475