Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946308.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38318850 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 11760 | 0.0 | 11.114783 | 5 |
GTCGCGC | 2535 | 0.0 | 10.754741 | 8 |
TCTATAC | 21950 | 0.0 | 10.710936 | 3 |
TATACTG | 18230 | 0.0 | 10.703479 | 5 |
CTATACT | 18910 | 0.0 | 10.667601 | 4 |
CATACAC | 100765 | 0.0 | 10.373413 | 3 |
GTATATA | 57390 | 0.0 | 10.1181345 | 1 |
TATACAG | 17330 | 0.0 | 10.065581 | 5 |
TCGCGCG | 3155 | 0.0 | 9.982205 | 9 |
GTATAGA | 23385 | 0.0 | 9.960688 | 1 |
ACATGAC | 84625 | 0.0 | 9.814942 | 8 |
ACACATG | 105425 | 0.0 | 9.813643 | 6 |
TAATACT | 30740 | 0.0 | 9.682797 | 4 |
GTATTAG | 20965 | 0.0 | 9.673951 | 1 |
GTGTATG | 96990 | 0.0 | 9.6063795 | 1 |
CACATGA | 100090 | 0.0 | 9.4915695 | 7 |
CTAGGCT | 9700 | 0.0 | 9.355922 | 4 |
CATGACA | 88945 | 0.0 | 9.348832 | 9 |
ATACCGT | 10280 | 0.0 | 9.2366 | 6 |
TACCGTG | 8755 | 0.0 | 9.234953 | 7 |