FastQCFastQC Report
Tue 15 Nov 2016
SRR1946377.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946377.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21387446
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG75400.015.7701355
TATACTG105550.015.5400865
CTATACT111450.015.2656294
TCTATAC138650.014.3724983
GTCGCGC10850.013.8613818
GAGCGCG13050.013.6854587
GTATAGA146750.013.5032231
TACCGTG55700.013.33177957
GTGTATG531250.013.2191451
CATACAC562350.013.19658853
ATACCGT67100.012.9579256
TAATACT180600.012.699554
ACATGAC403500.012.5446458
ATAATAC184150.012.50577453
ACACATG544100.012.343546
ATTATAC181000.012.3339243
TACACAG70900.012.0645575
CATGACA417550.011.9874659
GTATTAT179900.011.9830621
TAGACTG52300.011.8620165