Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946348.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 46937650 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 16360 | 0.0 | 16.95141 | 5 |
TACCGTG | 12515 | 0.0 | 16.497862 | 7 |
TCTATAC | 30615 | 0.0 | 15.18948 | 3 |
TATACTG | 24050 | 0.0 | 14.867623 | 5 |
ATACCGT | 15065 | 0.0 | 14.857819 | 6 |
CTAGTAC | 16095 | 0.0 | 14.402554 | 3 |
CTATACT | 24640 | 0.0 | 13.807047 | 4 |
GTATAGA | 33540 | 0.0 | 13.652205 | 1 |
CCGTGAG | 12440 | 0.0 | 13.617395 | 9 |
ACCGTGA | 16470 | 0.0 | 13.276987 | 8 |
CATACAC | 126345 | 0.0 | 13.229375 | 3 |
ACATGAC | 94490 | 0.0 | 12.857408 | 8 |
CTATACC | 23485 | 0.0 | 12.847657 | 4 |
ACACATG | 126480 | 0.0 | 12.606872 | 6 |
CATGACA | 95855 | 0.0 | 12.385483 | 9 |
CCTAGTA | 18490 | 0.0 | 12.308564 | 2 |
GTACTAG | 20755 | 0.0 | 12.173651 | 1 |
CACATGA | 122715 | 0.0 | 12.148577 | 7 |
GTATAGG | 16130 | 0.0 | 12.112123 | 1 |
GTATATA | 71280 | 0.0 | 11.997852 | 1 |