Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946272.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26492974 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 8600 | 0.0 | 14.433052 | 5 |
TACCGTG | 6820 | 0.0 | 13.163567 | 7 |
ATACCGT | 7500 | 0.0 | 12.408669 | 6 |
TCTATAC | 16685 | 0.0 | 12.286535 | 3 |
CCGTGAG | 5690 | 0.0 | 11.151575 | 9 |
TATACTG | 12520 | 0.0 | 10.852911 | 5 |
TATACAG | 11875 | 0.0 | 10.72972 | 5 |
CATACAC | 72670 | 0.0 | 10.649858 | 3 |
ACATGAC | 58530 | 0.0 | 10.359114 | 8 |
CTATACT | 12855 | 0.0 | 10.351303 | 4 |
GTATATA | 38920 | 0.0 | 10.266344 | 1 |
ACACATG | 72215 | 0.0 | 10.205633 | 6 |
CATGACA | 61090 | 0.0 | 9.978944 | 9 |
CACATGA | 69665 | 0.0 | 9.9653015 | 7 |
GTATAGA | 17710 | 0.0 | 9.75278 | 1 |
CTATACC | 13025 | 0.0 | 9.746904 | 4 |
TAATACT | 20395 | 0.0 | 9.705973 | 4 |
TCATACA | 80410 | 0.0 | 9.582411 | 2 |
GTGTATA | 17345 | 0.0 | 9.578144 | 1 |
GTATTAT | 20970 | 0.0 | 9.493424 | 1 |