Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946412.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28785080 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 31651 | 0.10995626901158517 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGTAC | 11425 | 0.0 | 12.261865 | 3 |
TAGACCG | 7645 | 0.0 | 11.622037 | 5 |
TATACCG | 8230 | 0.0 | 11.538504 | 5 |
CCGTGAG | 6960 | 0.0 | 10.807727 | 9 |
GTACTAG | 13315 | 0.0 | 10.804349 | 1 |
CCTAGTA | 11990 | 0.0 | 10.782677 | 2 |
ACATGAC | 104950 | 0.0 | 10.50614 | 8 |
GACCGTG | 5650 | 0.0 | 10.48017 | 7 |
TAGTACT | 22330 | 0.0 | 10.25245 | 4 |
CATACAC | 126540 | 0.0 | 10.220197 | 3 |
CATGACA | 109425 | 0.0 | 10.036445 | 9 |
TCTATAC | 15385 | 0.0 | 9.961312 | 3 |
ATACCGT | 6895 | 0.0 | 9.951735 | 6 |
GTATAGA | 15865 | 0.0 | 9.927116 | 1 |
ACACATG | 125915 | 0.0 | 9.90239 | 6 |
CTATACT | 12935 | 0.0 | 9.885301 | 4 |
GTGTATG | 118430 | 0.0 | 9.848802 | 1 |
CACATGA | 121770 | 0.0 | 9.779408 | 7 |
GTACTAC | 12235 | 0.0 | 9.756858 | 6 |
GTCGCGC | 1260 | 0.0 | 9.698407 | 8 |