Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946365.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43095078 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 14750 | 0.0 | 16.928682 | 5 |
ATACCGT | 14025 | 0.0 | 14.788586 | 6 |
TACCGTG | 12380 | 0.0 | 14.745087 | 7 |
TCTATAC | 27590 | 0.0 | 14.682684 | 3 |
TATACTG | 22515 | 0.0 | 14.550804 | 5 |
CTAGTAC | 13770 | 0.0 | 14.01052 | 3 |
CTATACT | 21590 | 0.0 | 13.718384 | 4 |
GTATAGA | 30430 | 0.0 | 13.307815 | 1 |
CCGTGAG | 10365 | 0.0 | 12.768562 | 9 |
CTATACC | 22340 | 0.0 | 12.459417 | 4 |
GTCGCGC | 1545 | 0.0 | 12.454322 | 8 |
CATACAC | 116165 | 0.0 | 12.433649 | 3 |
TAGTACT | 26875 | 0.0 | 12.138431 | 4 |
ACCGTGA | 13510 | 0.0 | 12.088951 | 8 |
GTATAGG | 14595 | 0.0 | 12.070593 | 1 |
TATACAG | 20075 | 0.0 | 11.947275 | 5 |
GTATATA | 59460 | 0.0 | 11.882952 | 1 |
GTGTATG | 110435 | 0.0 | 11.745217 | 1 |
ACATGAC | 102070 | 0.0 | 11.600691 | 8 |
ACACATG | 123000 | 0.0 | 11.578727 | 6 |