Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946430.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 32137374 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 14905 | 0.0 | 11.190306 | 5 |
TATACCG | 9835 | 0.0 | 10.987505 | 5 |
GTATAGA | 20040 | 0.0 | 10.134461 | 1 |
GTATATA | 44115 | 0.0 | 10.123996 | 1 |
ACATGAC | 89040 | 0.0 | 10.108459 | 8 |
CATACAC | 112800 | 0.0 | 10.047446 | 3 |
TCTATAC | 18615 | 0.0 | 10.046332 | 3 |
ACACATG | 112280 | 0.0 | 9.903054 | 6 |
GTCGCGC | 1240 | 0.0 | 9.849775 | 8 |
ATACCGT | 8470 | 0.0 | 9.816647 | 6 |
GTATTAG | 17480 | 0.0 | 9.762923 | 1 |
CACATGA | 108970 | 0.0 | 9.652069 | 7 |
CATGACA | 92620 | 0.0 | 9.601103 | 9 |
CTATACT | 15500 | 0.0 | 9.42734 | 4 |
GTGTATG | 108595 | 0.0 | 9.415949 | 1 |
GTATTAT | 23090 | 0.0 | 9.264076 | 1 |
TATACAG | 14055 | 0.0 | 9.226221 | 5 |
TCATACA | 123255 | 0.0 | 9.141866 | 2 |
TAGACTG | 8515 | 0.0 | 9.0490885 | 5 |
ATCATAC | 117835 | 0.0 | 8.9129925 | 1 |