Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946349.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40022026 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 13825 | 0.0 | 15.409529 | 5 |
GTCGCGC | 1825 | 0.0 | 15.170322 | 8 |
TATACTG | 18965 | 0.0 | 14.944545 | 5 |
CTAGTAC | 13190 | 0.0 | 14.621845 | 3 |
TCTATAC | 24150 | 0.0 | 14.475856 | 3 |
TACCGTG | 10965 | 0.0 | 14.293555 | 7 |
CTAGGCT | 10950 | 0.0 | 13.584706 | 4 |
GTATAGA | 26860 | 0.0 | 13.499192 | 1 |
CTATACT | 19450 | 0.0 | 13.438189 | 4 |
CATACAC | 106645 | 0.0 | 13.156363 | 3 |
GTATAGG | 14990 | 0.0 | 12.908985 | 1 |
ATACCGT | 12140 | 0.0 | 12.794159 | 6 |
CCGTGAG | 10285 | 0.0 | 12.364332 | 9 |
ACATGAC | 85455 | 0.0 | 12.32228 | 8 |
ACACATG | 107795 | 0.0 | 12.315066 | 6 |
TAGTACT | 24200 | 0.0 | 12.235427 | 4 |
TAGGCTG | 13360 | 0.0 | 12.22282 | 5 |
CTGTCCC | 13450 | 0.0 | 12.211005 | 9 |
GCTGTCC | 11030 | 0.0 | 12.209899 | 8 |
GTGTATG | 101300 | 0.0 | 12.179996 | 1 |