FastQCFastQC Report
Tue 15 Nov 2016
SRR1946384.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946384.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30229442
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC332830.11010127146905324No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGC54500.017.4219394
GACCGCA47750.011.1236394
GTCGCGC17100.010.4427968
GGCAGAC71350.010.27718590-91
TACCGTG76350.010.094027
TATACCG98850.010.0783625
ACATGAC1029850.09.9109488
GTATAGA183000.09.7388851
CCGTGAG61000.09.7067149
TATACTG132700.09.7030975
ATACCGT81200.09.6647636
GTATTAG155700.09.6645691
GGCTGGC119050.09.63389494
ACACATG1253700.09.6032076
CATACAC1259800.09.5666213
CTGAGCG224000.09.52684894
CACATGA1215450.09.526497
CAGACCG77550.09.51616992-93
CATGACA1084800.09.4869369
GTATATA424100.09.3582631