FastQCFastQC Report
Tue 15 Nov 2016
SRR1946443.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946443.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34412692
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTGAG91200.013.8115859
CTGAGCG122750.013.05527494
TATACCG133900.012.7097865
ATACCGT108900.012.171956
GTCGCGC23650.012.1228888
ACCGTGA131150.011.5038748
GTATAGA213100.011.1868221
CTAGTAC139650.011.1091973
TGAGCGG127850.011.02741294
TACCGTG88150.010.984357
TCTATAC192500.010.9409973
TCGCGCG29800.010.5672539
TAGGCTG102250.010.2989985
ACATGAC1159300.010.2734948
TATACTG147950.010.2000045
GTACTAG178450.010.1444021
CATACAC1421900.09.9519243
TATACAG147950.09.9457985
ACACATG1406450.09.8122986
CACATGA1353600.09.7576557