FastQCFastQC Report
Tue 15 Nov 2016
SRR1946400.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946400.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26434204
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC337850.12780789616362195No Hit
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT271090.10255273811157696No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGAGCG119950.013.63632594
TGAGCGG116150.011.61397994
GTATAGA162200.011.4480181
CCGTGAG68600.011.1656729
TATACCG90700.011.0874585
GACCGTG45400.010.6610777
GTATTAG131850.010.6247861
TATACTG124200.010.5562115
ACCGTGA92950.010.4145188
CTAGTAC103850.010.3633783
ACATGAC1019500.010.274118
ACACATG1156800.010.1271076
TACCGTG71400.010.0696177
CACATGA1131550.09.9668337
CATACAC1262750.09.9111963
CATGACA1063350.09.83717259
ATACCGT73800.09.7421876
AGACCGT61800.09.5808376
GTACTAG122300.09.5709921
TCTATAC153050.09.4884983