Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946418.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12626972 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 12892 | 0.10209890383854499 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATAGA | 8410 | 0.0 | 12.3102865 | 1 |
TATACCG | 4415 | 0.0 | 11.617606 | 5 |
ATACCGT | 3660 | 0.0 | 11.185681 | 6 |
CTAGTAC | 4670 | 0.0 | 10.88213 | 3 |
TATACTG | 5445 | 0.0 | 10.54345 | 5 |
ACATGAC | 42985 | 0.0 | 10.324008 | 8 |
TACCGTG | 3170 | 0.0 | 10.242772 | 7 |
ACACATG | 53660 | 0.0 | 10.049819 | 6 |
CATACAC | 54960 | 0.0 | 9.957264 | 3 |
CATGACA | 44435 | 0.0 | 9.945464 | 9 |
CACATGA | 52215 | 0.0 | 9.877408 | 7 |
GTATATA | 17585 | 0.0 | 9.660649 | 1 |
GTCGCGC | 585 | 1.4086627E-5 | 9.65337 | 8 |
GTATTAT | 9070 | 0.0 | 9.546673 | 1 |
TCTATAC | 6975 | 0.0 | 9.512221 | 3 |
TATACAG | 5260 | 0.0 | 9.482895 | 5 |
GTACTAG | 5960 | 0.0 | 9.47494 | 1 |
GTGTATG | 52455 | 0.0 | 9.383964 | 1 |
TCATACA | 59380 | 0.0 | 9.350133 | 2 |
GTATTAG | 7685 | 0.0 | 9.307675 | 1 |