FastQCFastQC Report
Tue 15 Nov 2016
SRR1946372.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946372.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33070726
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG102750.015.1665825
CTAGTAC100400.014.8687613
TATACTG171100.014.3477295
CTATACT178900.014.3263244
GTCGCGC12200.014.23496158
TCTATAC208200.014.2275483
GTATAGG123050.013.2881781
CATACAC840650.013.0671843
TAGTACT188700.012.7613894
GTGTATG800200.012.6830311
TATACAG155200.012.5815195
ACATGAC696800.012.5358168
CCTATAC130400.012.4920383
ACACATG857650.012.4321156
GTATATA454850.012.406311
GTATAGA217800.012.4044581
CATGACA698050.012.2981449
GTACTAG125000.012.2163421
CTAGGCT84200.012.0418764
CACATGA837300.011.9726567