Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946355.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38735564 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 20200 | 0.0 | 14.1762705 | 5 |
TATACCG | 12230 | 0.0 | 14.010381 | 5 |
GAGCGCG | 2010 | 0.0 | 13.313667 | 7 |
GTCGCGC | 1700 | 0.0 | 13.2562685 | 8 |
CTATACT | 20800 | 0.0 | 13.158237 | 4 |
CATACAC | 99625 | 0.0 | 13.07637 | 3 |
TATACAG | 17840 | 0.0 | 12.525517 | 5 |
TCTATAC | 23895 | 0.0 | 12.45589 | 3 |
ACATGAC | 74620 | 0.0 | 12.313019 | 8 |
ACACATG | 102585 | 0.0 | 12.292221 | 6 |
CTAGGCT | 10605 | 0.0 | 12.173473 | 4 |
GTATAGG | 14735 | 0.0 | 12.018293 | 1 |
CATGACA | 76400 | 0.0 | 11.952402 | 9 |
CACATGA | 98595 | 0.0 | 11.818592 | 7 |
GTATATA | 54125 | 0.0 | 11.76829 | 1 |
TCATACA | 111250 | 0.0 | 11.57569 | 2 |
GTGTATG | 94410 | 0.0 | 11.548053 | 1 |
ATCATAC | 107450 | 0.0 | 11.545523 | 1 |
CCGTGCG | 2320 | 0.0 | 11.534953 | 9 |
TAGGCTG | 13145 | 0.0 | 11.463784 | 5 |