Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946455.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43248330 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTGAGCG | 18415 | 0.0 | 17.24469 | 94 |
TGAGCGG | 17650 | 0.0 | 15.273313 | 94 |
GTCGCGC | 4280 | 0.0 | 11.969473 | 8 |
TATACCG | 17295 | 0.0 | 11.66029 | 5 |
GTATAGA | 26325 | 0.0 | 11.34466 | 1 |
TCTGAGC | 31565 | 0.0 | 11.252901 | 94 |
GCGTGTA | 6875 | 0.0 | 11.01163 | 92-93 |
AGGCGTG | 7245 | 0.0 | 10.833238 | 90-91 |
TATACTG | 18605 | 0.0 | 10.814009 | 5 |
TCGCGCG | 4835 | 0.0 | 10.789808 | 9 |
GCTGTCC | 12740 | 0.0 | 10.772232 | 8 |
ACATGAC | 139040 | 0.0 | 10.620835 | 8 |
TAGGCTG | 14455 | 0.0 | 10.504057 | 5 |
ACACATG | 174420 | 0.0 | 10.272864 | 6 |
CATACAC | 174170 | 0.0 | 10.272321 | 3 |
AGACCGG | 11775 | 0.0 | 10.268229 | 94 |
CACATGA | 168235 | 0.0 | 10.22569 | 7 |
TGATGGC | 23255 | 0.0 | 10.15572 | 94 |
CATGACA | 147550 | 0.0 | 10.052753 | 9 |
GTATATA | 60915 | 0.0 | 10.029309 | 1 |