FastQCFastQC Report
Tue 15 Nov 2016
SRR1946337.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946337.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48624938
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG159050.015.5071895
TATACTG255000.014.7202115
CTAGGCT134500.014.6010844
TACCGTG132400.014.4417747
TCTATAC305450.014.3353033
CTATACT258150.013.97724
CATACAC1186650.013.8651513
TAGGCTG164900.013.788985
CTAGTAC169600.013.7677073
GTATAGG178600.013.3194161
GTATAGA321200.013.2461341
ACACATG1139350.012.8979346
GCTGTCC135800.012.80017958
ATACCGT140500.012.6393876
GTGTATG1096900.012.5921791
TATACAG225050.012.5250555
ACATGAC840850.012.4874328
TCATACA1308600.012.3252622
TAGTACT325000.012.2586774
CATGACA849750.012.2184249