FastQCFastQC Report
Tue 15 Nov 2016
SRR1946415.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946415.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34762914
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACCGTG72100.011.6020477
TATACCG104650.011.5902185
TATACTG161900.010.8311145
CTATACT171950.010.8265724
TAGACCG90200.010.7888455
GTCGCGC13850.010.519898
ACATGAC1011800.010.3727368
CCGTGAG83000.010.3087279
CATACAC1221450.010.303243
ACACATG1232050.010.2385496
GTATTAG199150.010.1511721
CACATGA1180500.010.0637767
CTAGTAC128850.010.033433
GTATAGA214800.09.9587561
CATGACA1052200.09.9234359
GTGTATG1135000.09.8833141
TCTATAC199800.09.8351723
GTATATA519750.09.832481
GTACTAG152750.09.756771
GATTGAG1048150.09.6173127