Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946311.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20523860 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 10150 | 0.0 | 15.417385 | 5 |
CCGTGCG | 1300 | 0.0 | 14.096814 | 9 |
CTATACT | 10265 | 0.0 | 13.87448 | 4 |
TATACCG | 6475 | 0.0 | 13.862007 | 5 |
CATACAC | 48435 | 0.0 | 13.712478 | 3 |
GCCGTGC | 2300 | 0.0 | 13.6882105 | 8 |
ACATGAC | 41550 | 0.0 | 13.389995 | 8 |
ACACATG | 49090 | 0.0 | 13.066345 | 6 |
GTGTATG | 46940 | 0.0 | 12.978402 | 1 |
TCTATAC | 12740 | 0.0 | 12.913135 | 3 |
CATGACA | 42330 | 0.0 | 12.899046 | 9 |
TATACAG | 9045 | 0.0 | 12.78083 | 5 |
GTATAGA | 13440 | 0.0 | 12.610527 | 1 |
CACATGA | 48550 | 0.0 | 12.45642 | 7 |
TAATACT | 16190 | 0.0 | 12.106603 | 4 |
TAGGCCG | 2115 | 0.0 | 11.998195 | 5 |
CCGTGCC | 1775 | 0.0 | 11.9128 | 9 |
GTATTAG | 12110 | 0.0 | 11.896173 | 1 |
TCATACA | 54860 | 0.0 | 11.82378 | 2 |
CTAGGCT | 5290 | 0.0 | 11.817593 | 4 |