Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946333.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 55678064 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 2235 | 0.0 | 14.293599 | 8 |
TATACCG | 18490 | 0.0 | 14.228456 | 5 |
CTATACT | 29865 | 0.0 | 13.827783 | 4 |
GAGCGCG | 3245 | 0.0 | 13.753687 | 7 |
TATACTG | 29160 | 0.0 | 13.629802 | 5 |
TCTATAC | 36850 | 0.0 | 13.501583 | 3 |
CATACAC | 140515 | 0.0 | 12.949441 | 3 |
ACATGAC | 104570 | 0.0 | 12.74117 | 8 |
TATACAG | 25970 | 0.0 | 12.44581 | 5 |
ACACATG | 141035 | 0.0 | 12.43485 | 6 |
TACCGTG | 13900 | 0.0 | 12.3701935 | 7 |
CATGACA | 105875 | 0.0 | 12.313451 | 9 |
GTATAGA | 38535 | 0.0 | 12.272982 | 1 |
GTATATA | 79460 | 0.0 | 12.01033 | 1 |
CACATGA | 135115 | 0.0 | 11.818376 | 7 |
GTATAGG | 21255 | 0.0 | 11.722554 | 1 |
GTGTATG | 133045 | 0.0 | 11.71719 | 1 |
TCATACA | 157360 | 0.0 | 11.500517 | 2 |
GCGCGCC | 3855 | 0.0 | 11.45549 | 9 |
CTAGTAC | 17145 | 0.0 | 11.426804 | 3 |