Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946417.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 15216436 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1440 | 0.0 | 16.339521 | 8 |
TCGCGCG | 1750 | 0.0 | 13.177102 | 9 |
TATACCG | 5605 | 0.0 | 11.921287 | 5 |
GGTCGCG | 2230 | 0.0 | 11.816588 | 7 |
ATACCGT | 3945 | 0.0 | 11.808527 | 6 |
TAGGCGG | 5285 | 0.0 | 11.663209 | 4 |
AGGTCGC | 2350 | 0.0 | 11.213151 | 6 |
GTATAGA | 8620 | 0.0 | 11.19014 | 1 |
GCTGTCC | 5025 | 0.0 | 10.8631 | 8 |
CTATACT | 6570 | 0.0 | 10.742805 | 4 |
GTATTAT | 10075 | 0.0 | 10.601559 | 1 |
GCGGATC | 5530 | 0.0 | 10.381106 | 7 |
ACATGAC | 47105 | 0.0 | 10.249724 | 8 |
GGCGGAT | 5965 | 0.0 | 10.097342 | 6 |
CTAGGCT | 5120 | 0.0 | 9.833444 | 4 |
AGGCGGA | 5950 | 0.0 | 9.72744 | 5 |
ACACATG | 60265 | 0.0 | 9.689785 | 6 |
CACATGA | 57940 | 0.0 | 9.640092 | 7 |
CCGTGAG | 3330 | 0.0 | 9.61007 | 9 |
CATGACA | 50505 | 0.0 | 9.606964 | 9 |