FastQCFastQC Report
Tue 15 Nov 2016
SRR1946278.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946278.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22629304
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC8850.015.4006488
CTAGTAC78000.013.6778073
TATACTG103000.013.5976635
TATACCG77000.013.5502555
CCGTGAG61250.012.4306329
CTATACT112400.012.1677954
CATACAC543850.012.1590653
TCGCGCG12850.012.0696629
TAGACCG58900.011.88929755
TCTATAC139350.011.8381913
ATACCGT64650.011.5588036
ACACATG537800.011.4743536
GTGTATG524750.011.4642461
TAGTACT153750.011.463084
ACATGAC416900.011.3860678
ACCGTGA84200.011.2193658
GTACTAG95700.011.214761
GTATAGA147050.011.2039221
GACCGTG47050.011.1877477
AGACCGT61800.011.1792626