Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946298.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19859124 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATACT | 10410 | 0.0 | 15.4854355 | 4 |
TATACTG | 9945 | 0.0 | 14.413688 | 5 |
CATACAC | 55335 | 0.0 | 14.396735 | 3 |
TATACCG | 6435 | 0.0 | 14.38791 | 5 |
ACATGAC | 43935 | 0.0 | 14.141675 | 8 |
ACACATG | 54385 | 0.0 | 13.947759 | 6 |
GTGTATG | 51625 | 0.0 | 13.731222 | 1 |
CATGACA | 45340 | 0.0 | 13.68272 | 9 |
CACATGA | 52560 | 0.0 | 13.430574 | 7 |
GTATAGA | 12965 | 0.0 | 13.360402 | 1 |
GAGCGCG | 1130 | 0.0 | 13.309188 | 7 |
TCATACA | 61220 | 0.0 | 12.74432 | 2 |
TATACAG | 9115 | 0.0 | 12.735626 | 5 |
TCTATAC | 11965 | 0.0 | 12.648454 | 3 |
CCGTGCG | 1100 | 0.0 | 12.390401 | 9 |
TACCGTG | 4290 | 0.0 | 12.379445 | 7 |
ATCATAC | 58880 | 0.0 | 12.343085 | 1 |
GATTGAG | 48710 | 0.0 | 12.282599 | 7 |
GTATATA | 28800 | 0.0 | 12.241469 | 1 |
GTATTAG | 12165 | 0.0 | 12.226981 | 1 |