Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946343.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43762128 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 14745 | 0.0 | 16.389832 | 5 |
TATACTG | 22595 | 0.0 | 15.24389 | 5 |
TCTATAC | 28860 | 0.0 | 15.040592 | 3 |
CTATACT | 23120 | 0.0 | 14.6544285 | 4 |
GTATAGA | 31235 | 0.0 | 14.390477 | 1 |
TACCGTG | 10745 | 0.0 | 14.1063 | 7 |
TATACAG | 20125 | 0.0 | 13.803776 | 5 |
ATACCGT | 13740 | 0.0 | 13.353851 | 6 |
CATACAC | 110095 | 0.0 | 13.324193 | 3 |
GTATATA | 60565 | 0.0 | 13.1835375 | 1 |
GTGTATG | 105385 | 0.0 | 12.666307 | 1 |
CTAGTAC | 12970 | 0.0 | 12.554777 | 3 |
ACACATG | 107695 | 0.0 | 12.309473 | 6 |
GTATAGG | 15335 | 0.0 | 12.220637 | 1 |
ACATGAC | 76090 | 0.0 | 12.019967 | 8 |
CCTAGAC | 10395 | 0.0 | 12.008165 | 3 |
TAGTACT | 24710 | 0.0 | 11.983292 | 4 |
ACTGTCC | 11370 | 0.0 | 11.886419 | 8 |
CCGTGCG | 2495 | 0.0 | 11.849199 | 9 |
CATGACA | 76280 | 0.0 | 11.830078 | 9 |