Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946334.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 46726772 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 2060 | 0.0 | 16.419918 | 8 |
TATACCG | 16440 | 0.0 | 16.059563 | 5 |
TCTATAC | 30055 | 0.0 | 15.194012 | 3 |
TACCGTG | 12925 | 0.0 | 14.7207575 | 7 |
TATACTG | 24130 | 0.0 | 14.62116 | 5 |
CTATACT | 24390 | 0.0 | 13.849688 | 4 |
ATACCGT | 14525 | 0.0 | 13.454917 | 6 |
CATACAC | 108915 | 0.0 | 13.402211 | 3 |
GTATAGA | 32255 | 0.0 | 13.11823 | 1 |
GTATAGG | 16305 | 0.0 | 13.090758 | 1 |
TCGCGCG | 2670 | 0.0 | 13.020455 | 9 |
ACATGAC | 94625 | 0.0 | 12.402015 | 8 |
ACACATG | 112170 | 0.0 | 12.371935 | 6 |
CTAGTAC | 15265 | 0.0 | 12.341573 | 3 |
CTAGGCT | 12875 | 0.0 | 12.07824 | 4 |
GTGTATG | 103125 | 0.0 | 12.063008 | 1 |
CATGACA | 96460 | 0.0 | 12.015105 | 9 |
CCGTGAG | 11100 | 0.0 | 11.977583 | 9 |
GTATATA | 63195 | 0.0 | 11.9479265 | 1 |
TATACAG | 21250 | 0.0 | 11.938067 | 5 |