Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946362.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41147188 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 15450 | 0.0 | 17.072996 | 5 |
TCTATAC | 28105 | 0.0 | 16.618288 | 3 |
TACCGTG | 11965 | 0.0 | 16.315115 | 7 |
ATACCGT | 13575 | 0.0 | 15.934963 | 6 |
CCGTGAG | 11475 | 0.0 | 15.3775215 | 9 |
CTAGTAC | 14735 | 0.0 | 15.29107 | 3 |
CTATACT | 22090 | 0.0 | 14.704 | 4 |
TATACTG | 20485 | 0.0 | 14.663778 | 5 |
ACCGTGA | 14390 | 0.0 | 14.610808 | 8 |
GTATAGA | 29960 | 0.0 | 14.520443 | 1 |
GTATAGG | 15165 | 0.0 | 13.723725 | 1 |
CATACAC | 105485 | 0.0 | 13.670276 | 3 |
ACATGAC | 86555 | 0.0 | 13.4521475 | 8 |
CTATACC | 22470 | 0.0 | 13.3482065 | 4 |
TATACAG | 18470 | 0.0 | 13.188711 | 5 |
ACACATG | 105490 | 0.0 | 13.05085 | 6 |
CATGACA | 88270 | 0.0 | 13.020476 | 9 |
TAGTACT | 27415 | 0.0 | 12.977949 | 4 |
CTAGGCT | 10670 | 0.0 | 12.933261 | 4 |
GTACTAG | 19125 | 0.0 | 12.920966 | 1 |