FastQCFastQC Report
Tue 15 Nov 2016
SRR1946370.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946370.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43103064
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG146350.015.45957855
TCTATAC276150.013.6506933
TACCGTG109900.013.0242677
GTATAGA300500.012.930741
CTATACT214600.012.5776544
TATACTG214600.012.5552545
ATACCGT138500.012.50285156
CTAGTAC136450.012.4198933
CATACAC1044100.012.2655333
ACACATG1027550.011.7417166
GTATATA623450.011.6059691
ACATGAC786350.011.4895038
TATACAG201300.011.4260375
GTGTATG1012500.011.2532791
CACATGA1001700.011.2394147
CATGACA798300.011.1293279
TCATACA1157450.010.931812
TAATACT329450.010.9144234
CTATACC222250.010.8985684
TAGTACT262600.010.6718854