FastQCFastQC Report
Tue 15 Nov 2016
SRR1946435.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946435.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37354750
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG116850.011.5801315
ATACCGT98700.011.0418246
TCTATAC204300.011.0168813
GTATAGA225400.010.7418821
TATACTG171300.010.3951665
ACATGAC1117100.010.1722158
CATACAC1571700.010.0781453
ACACATG1502750.09.9686836
GTATATA507850.09.9054781
CTATACT180250.09.8793844
CACATGA1457700.09.7772667
CATGACA1157500.09.7360229
TAGTACT223700.09.7038024
GTACTAG141600.09.6285711
CTAGTAC123100.09.5427483
GTATTAG185200.09.4941851
GTATTAT273900.09.4748891
TATACAG161400.09.3735055
TCATACA1691300.09.3683122
TAGGCTG106850.09.3660135