FastQCFastQC Report
Tue 15 Nov 2016
SRR1946424.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946424.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18616766
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC8900.015.3333378
TATACCG61750.013.2592815
ATACCGT53200.011.7638336
TCGCGCG12450.011.7177249
GTATAGA116200.011.2975621
TACCGTG46350.011.0658417
CCGTGAG42250.010.91566859
TCTATAC110800.010.8289383
CTAGTAC61350.010.6606993
TATACTG85600.010.3345545
GTATATA269750.010.2042481
GTACTAG71200.010.1110921
CTAGGCT47200.010.0685834
CTATACT93100.010.0070124
GTATTAG101350.09.98162651
ACCGTGA57000.09.8242828
GTGTATG641750.09.7735171
ACATGAC520000.09.57438858
TATACAG80000.09.528685
GATTGAG593600.09.369827