FastQCFastQC Report
Tue 15 Nov 2016
SRR1946307.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946307.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32657188
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG115600.014.6013585
CCGTGAG70800.013.4774839
TACCGTG96000.013.1715767
ATACCGT99750.013.0528566
TCTATAC199400.012.568423
ACCGTGA104800.011.43728358
TATACTG148600.011.1373155
TAGGCGG73750.010.7112444
CTAGTAC99750.010.6059173
GTATAGA209950.010.5355861
CTATACC160250.010.44586854
GTCGCGC15600.010.24467858
CATACAC971300.09.9577123
GTATATA498200.09.81496051
GCTGTCC81450.09.7530328
CTATACT160650.09.7466684
GTCTAGG68800.09.713521
TAGGCTG100700.09.6182135
TCGCGCG18350.09.477899
ACATGAC695000.09.4483428