Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946376.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21456502 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 7485 | 0.0 | 16.325583 | 5 |
TATACTG | 10040 | 0.0 | 15.635075 | 5 |
CATACAC | 55340 | 0.0 | 14.395201 | 3 |
GTATAGA | 14570 | 0.0 | 13.98826 | 1 |
CTAGTAC | 7835 | 0.0 | 13.9166975 | 3 |
ACATGAC | 43860 | 0.0 | 13.598161 | 8 |
TCTATAC | 13690 | 0.0 | 13.594991 | 3 |
ACACATG | 54040 | 0.0 | 13.567394 | 6 |
CTATACT | 10660 | 0.0 | 13.447136 | 4 |
TACCGTG | 5600 | 0.0 | 13.260388 | 7 |
GTGTATG | 52575 | 0.0 | 13.196342 | 1 |
CATGACA | 44855 | 0.0 | 13.191739 | 9 |
TCATACA | 60205 | 0.0 | 12.99777 | 2 |
ATACCGT | 6650 | 0.0 | 12.862842 | 6 |
CACATGA | 52440 | 0.0 | 12.834162 | 7 |
GTATTAG | 12290 | 0.0 | 12.791749 | 1 |
GTACTAG | 9460 | 0.0 | 12.588231 | 1 |
GTACTAC | 8535 | 0.0 | 12.555052 | 6 |
TATACAG | 9010 | 0.0 | 12.5191145 | 5 |
GATTGAG | 50380 | 0.0 | 12.342093 | 7 |