FastQCFastQC Report
Tue 15 Nov 2016
SRR1946399.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946399.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24424918
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGC38300.016.5674394
GTCGCGC21400.013.3948968
CCGTGAG67850.012.9513499
TATACCG90500.012.8774255
CTGAGCG111100.012.26885794
TCGCGCG24550.012.2504429
TGAGCGG110100.012.16683894
TAGGCGG76800.011.6881354
TAGGCTG87850.011.0727255
TAGACCG74600.010.8976585
GGTCGCG30100.010.7722367
AGGTCGC30650.010.732256
ACCGTGA95700.010.6554328
CTAGGCT84150.010.4438494
CTAGTAC109000.010.39114953
ATACCGT69650.010.3227066
GCGGATC81100.010.3138887
TGATGGC152750.010.277451594
GCTGTCC74650.010.1348978
GGCGGAT88800.010.1074986