FastQCFastQC Report
Tue 15 Nov 2016
SRR1946444.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946444.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28530958
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGAGCG84200.013.39537694
TGAGCGG83650.011.91038294
TATACCG85050.011.2762285
ACATGAC945900.010.2958438
TATACTG130650.010.2192015
ACACATG1192200.09.9316886
CATGACA979050.09.8462619
CATACAC1223950.09.8406093
CACATGA1163000.09.7726317
CTAGTAC89200.09.7501963
GTATTAT217050.09.6397741
GTATATA409750.09.5815141
TATACAG125250.09.571295
GTATAGA165900.09.4943471
TACCGTG57150.09.4583757
ATACCGT70400.09.4143536
GTATTAG153450.09.2841551
TAGTACT172550.09.2361714
CCGTGAG56950.09.1609359
TCATACA1305650.09.1528762