FastQCFastQC Report
Tue 15 Nov 2016
SRR1946421.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946421.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14347624
Sequences flagged as poor quality0
Sequence length100
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG62900.011.2222835
TCTATAC75100.010.8397183
TATACCG47950.010.7955495
CTAGTAC49050.010.7446143
CTAGGCT38600.010.6058814
GTATAGA86150.010.5965451
GTATTAG75250.010.5681281
GTATATA195800.010.478321
GTACTAG60250.010.4656351
GTATTAT101950.010.0159091
TAGTACT93650.09.9488354
ACATGAC430400.09.9176228
CATACAC525900.09.8781973
ACACATG527050.09.732336
GTGTATG489700.09.6668671
CACATGA508400.09.654377
GTCTAGG31950.09.5732711
GTGTAGG50600.09.4856591
TAGACAG46650.09.4823695
CTATACT60550.09.4811384