FastQCFastQC Report
Tue 15 Nov 2016
SRR1946302.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946302.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22329486
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG78200.016.8868985
TACCGTG63350.015.2066057
GTCGCGC10350.014.98286158
ATACCGT69350.014.5010736
TCTATAC145700.014.0979163
CCGTGAG53950.013.6750339
CTAGTAC72900.013.6691443
CATACAC572400.013.1469413
GTATAGA155050.012.9949831
TATACTG104600.012.8943825
CTATACC112300.012.8078044
CTATACT113250.012.6588614
TAGACTG57150.012.4168395
ACACATG560900.012.3409946
ACATGAC388400.012.2439768
TAGTACT144400.011.9462584
CACATGA521600.011.748037
ACCGTGA74200.011.7162588
CATGACA409650.011.6776379
TCATACA644600.011.55771352