Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946444.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28530958 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTGAGCG | 8420 | 0.0 | 13.395376 | 94 |
TGAGCGG | 8365 | 0.0 | 11.910382 | 94 |
TATACCG | 8505 | 0.0 | 11.276228 | 5 |
ACATGAC | 94590 | 0.0 | 10.295843 | 8 |
TATACTG | 13065 | 0.0 | 10.219201 | 5 |
ACACATG | 119220 | 0.0 | 9.931688 | 6 |
CATGACA | 97905 | 0.0 | 9.846261 | 9 |
CATACAC | 122395 | 0.0 | 9.840609 | 3 |
CACATGA | 116300 | 0.0 | 9.772631 | 7 |
CTAGTAC | 8920 | 0.0 | 9.750196 | 3 |
GTATTAT | 21705 | 0.0 | 9.639774 | 1 |
GTATATA | 40975 | 0.0 | 9.581514 | 1 |
TATACAG | 12525 | 0.0 | 9.57129 | 5 |
GTATAGA | 16590 | 0.0 | 9.494347 | 1 |
TACCGTG | 5715 | 0.0 | 9.458375 | 7 |
ATACCGT | 7040 | 0.0 | 9.414353 | 6 |
GTATTAG | 15345 | 0.0 | 9.284155 | 1 |
TAGTACT | 17255 | 0.0 | 9.236171 | 4 |
CCGTGAG | 5695 | 0.0 | 9.160935 | 9 |
TCATACA | 130565 | 0.0 | 9.152876 | 2 |