Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946390.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26542230 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 2030 | 0.0 | 13.658162 | 8 |
TCGCGCG | 2495 | 0.0 | 11.489396 | 9 |
AGGTCGC | 3430 | 0.0 | 11.097593 | 6 |
TATACCG | 8225 | 0.0 | 10.741375 | 5 |
TATACTG | 11215 | 0.0 | 10.517497 | 5 |
GTATAGA | 15675 | 0.0 | 10.289314 | 1 |
GTATATA | 35545 | 0.0 | 10.040679 | 1 |
TGAGCGG | 14010 | 0.0 | 9.830236 | 94 |
CATACAC | 109430 | 0.0 | 9.54025 | 3 |
ACATGAC | 80945 | 0.0 | 9.521166 | 8 |
ACACATG | 107280 | 0.0 | 9.330368 | 6 |
GTATTAT | 22600 | 0.0 | 9.321148 | 1 |
TCTATAC | 14445 | 0.0 | 9.176544 | 3 |
TAGGCGG | 6775 | 0.0 | 9.158382 | 4 |
CACATGA | 102295 | 0.0 | 9.137275 | 7 |
GTATTAG | 13200 | 0.0 | 9.083769 | 1 |
GTATAAA | 26460 | 0.0 | 9.063171 | 1 |
GTATTAA | 17055 | 0.0 | 9.043197 | 1 |
CATGACA | 84905 | 0.0 | 9.005176 | 9 |
GTGTATG | 104855 | 0.0 | 8.942024 | 1 |