FastQCFastQC Report
Tue 15 Nov 2016
SRR1946359.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946359.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87154464
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG274700.015.7912875
TATACTG445500.014.4475425
CATACAC2303000.013.9641283
CTATACT464200.013.4512824
TCTATAC554300.013.4500153
GTATAGG298850.013.4247411
CTAGTAC284150.013.1682423
ACATGAC2043350.013.1113088
ACACATG2403000.013.0863646
TACCGTG212100.012.8612757
GTATAGA582100.012.8241211
CATGACA2071450.012.817859
CACATGA2334200.012.5575187
ATACCGT268400.012.4194816
TCATACA2568350.012.3726212
GTGTATG2207550.012.1961051
GTATATA1240400.012.1499341
TATACAG405650.012.1402665
ATCATAC2520200.012.1053841
GTATTAG498500.011.8365681