FastQCFastQC Report
Tue 15 Nov 2016
SRR1946462.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946462.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32387644
Sequences flagged as poor quality0
Sequence length100
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG166000.013.929295
TATACCG115500.013.5091515
CTATACT176700.012.5538644
TCTATAC221800.012.2472783
TAGACCG75050.011.3344345
GTATTAG250150.011.1891111
GTATAGA237200.011.0860351
CATACAC616000.010.8948383
TAATACT338450.010.5533674
GTATAGG126250.010.5074381
CTAGTAC111400.010.4204163
TAGGCCG29350.010.4082375
ACTGTGC56000.010.3227428
TACACAG101900.010.238845
ACACATG614650.010.2153336
CCGTGAG72450.010.18469
ACATGAC502700.010.0502678
CTGTGCA75000.010.0263179
TATACAG202450.09.9821175
CCGTGCG25450.09.9721469