FastQCFastQC Report
Tue 15 Nov 2016
SRR1946464.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946464.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27858876
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG134850.014.04475
TATACCG97350.013.4687285
CTATACT146250.012.6928624
TACACTG87900.012.5642725
TCTATAC174400.011.9914543
GTATAGA193450.011.3304581
TAGACTG64800.011.3137865
TATACAG176650.011.1736225
GTATATA381650.011.0549681
TAATACT295550.010.9717644
CATACAC529850.010.9539913
ACAGTGC58350.010.9537458
GTATTAG212400.010.8953421
ATACTGT182700.010.70086
ACATGAC416850.010.5864518
ACACATG523650.010.4555356
TATACTA232150.010.42555
TAGACCG55400.010.3492395
GTATAAT267100.010.301781
CTAGTAC81750.010.2327093