FastQCFastQC Report
Tue 15 Nov 2016
SRR1946412.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946412.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28785080
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC316510.10995626901158517No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGTAC114250.012.2618653
TAGACCG76450.011.6220375
TATACCG82300.011.5385045
CCGTGAG69600.010.8077279
GTACTAG133150.010.8043491
CCTAGTA119900.010.7826772
ACATGAC1049500.010.506148
GACCGTG56500.010.480177
TAGTACT223300.010.252454
CATACAC1265400.010.2201973
CATGACA1094250.010.0364459
TCTATAC153850.09.9613123
ATACCGT68950.09.9517356
GTATAGA158650.09.9271161
ACACATG1259150.09.902396
CTATACT129350.09.8853014
GTGTATG1184300.09.8488021
CACATGA1217700.09.7794087
GTACTAC122350.09.7568586
GTCGCGC12600.09.6984078