Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946424.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18616766 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 890 | 0.0 | 15.333337 | 8 |
TATACCG | 6175 | 0.0 | 13.259281 | 5 |
ATACCGT | 5320 | 0.0 | 11.763833 | 6 |
TCGCGCG | 1245 | 0.0 | 11.717724 | 9 |
GTATAGA | 11620 | 0.0 | 11.297562 | 1 |
TACCGTG | 4635 | 0.0 | 11.065841 | 7 |
CCGTGAG | 4225 | 0.0 | 10.9156685 | 9 |
TCTATAC | 11080 | 0.0 | 10.828938 | 3 |
CTAGTAC | 6135 | 0.0 | 10.660699 | 3 |
TATACTG | 8560 | 0.0 | 10.334554 | 5 |
GTATATA | 26975 | 0.0 | 10.204248 | 1 |
GTACTAG | 7120 | 0.0 | 10.111092 | 1 |
CTAGGCT | 4720 | 0.0 | 10.068583 | 4 |
CTATACT | 9310 | 0.0 | 10.007012 | 4 |
GTATTAG | 10135 | 0.0 | 9.9816265 | 1 |
ACCGTGA | 5700 | 0.0 | 9.824282 | 8 |
GTGTATG | 64175 | 0.0 | 9.773517 | 1 |
ACATGAC | 52000 | 0.0 | 9.5743885 | 8 |
TATACAG | 8000 | 0.0 | 9.52868 | 5 |
GATTGAG | 59360 | 0.0 | 9.36982 | 7 |