Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946317.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19750024 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 6935 | 0.0 | 17.010342 | 5 |
TATACTG | 9270 | 0.0 | 15.0071335 | 5 |
TCTATAC | 12175 | 0.0 | 14.746202 | 3 |
ATACCGT | 6380 | 0.0 | 14.43847 | 6 |
CTAGGCT | 5540 | 0.0 | 14.421981 | 4 |
TACCGTG | 6360 | 0.0 | 14.336081 | 7 |
GTATAGA | 12470 | 0.0 | 13.813978 | 1 |
CTATACT | 9730 | 0.0 | 13.621409 | 4 |
TATACAG | 8180 | 0.0 | 13.214791 | 5 |
CATACAC | 44680 | 0.0 | 13.180252 | 3 |
CCGTGAG | 4860 | 0.0 | 13.151897 | 9 |
TAGACCG | 4300 | 0.0 | 13.115915 | 5 |
TAGGCTG | 6505 | 0.0 | 13.005019 | 5 |
TAGGCGG | 4920 | 0.0 | 12.6094055 | 4 |
ACCGTGA | 6695 | 0.0 | 12.425346 | 8 |
GTCGCGC | 915 | 0.0 | 12.327526 | 8 |
ACACATG | 44435 | 0.0 | 12.269266 | 6 |
ACATGAC | 36045 | 0.0 | 12.074017 | 8 |
TAGTACT | 11755 | 0.0 | 11.994563 | 4 |
GTGTATG | 43940 | 0.0 | 11.964575 | 1 |