Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946291.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23949624 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1165 | 0.0 | 17.750406 | 8 |
CTATACT | 11480 | 0.0 | 15.106576 | 4 |
TATACCG | 8205 | 0.0 | 14.549119 | 5 |
TCTATAC | 13505 | 0.0 | 14.164207 | 3 |
TATACTG | 10995 | 0.0 | 14.063139 | 5 |
CATACAC | 66725 | 0.0 | 13.8268795 | 3 |
TCGCGCG | 1685 | 0.0 | 13.667143 | 9 |
ACATGAC | 53335 | 0.0 | 13.464574 | 8 |
ACACATG | 68595 | 0.0 | 13.189243 | 6 |
GTGTATG | 63220 | 0.0 | 12.931755 | 1 |
CATGACA | 55495 | 0.0 | 12.889687 | 9 |
CACATGA | 66185 | 0.0 | 12.774772 | 7 |
GTATAGA | 14775 | 0.0 | 12.710353 | 1 |
TATACAG | 9865 | 0.0 | 12.62497 | 5 |
TCATACA | 73760 | 0.0 | 12.41927 | 2 |
ATCATAC | 72640 | 0.0 | 12.382177 | 1 |
CGAGGGG | 2940 | 0.0 | 12.3185005 | 94 |
GTATATA | 32600 | 0.0 | 12.040947 | 1 |
GGACCGT | 2460 | 0.0 | 12.036134 | 6 |
CTAGTAC | 6740 | 0.0 | 11.854452 | 3 |