Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946426.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31614188 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 35399 | 0.11197187794290335 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10545 | 0.0 | 12.787074 | 5 |
ATACCGT | 8420 | 0.0 | 11.883254 | 6 |
TACCGTG | 8370 | 0.0 | 11.168497 | 7 |
TCTATAC | 16945 | 0.0 | 11.119432 | 3 |
GTATAGA | 19330 | 0.0 | 11.114052 | 1 |
CCGTGAG | 7570 | 0.0 | 10.859453 | 9 |
CTAGTAC | 11930 | 0.0 | 10.673545 | 3 |
ACATGAC | 104690 | 0.0 | 10.167632 | 8 |
TAGACCG | 6940 | 0.0 | 10.019317 | 5 |
GTACTAG | 14445 | 0.0 | 9.990998 | 1 |
GCTGTCC | 7900 | 0.0 | 9.989581 | 8 |
CATACAC | 124360 | 0.0 | 9.902986 | 3 |
TAGTACT | 20435 | 0.0 | 9.886645 | 4 |
GTATATA | 46295 | 0.0 | 9.829453 | 1 |
ACACATG | 124900 | 0.0 | 9.801212 | 6 |
CACATGA | 120720 | 0.0 | 9.755337 | 7 |
TATACAG | 12850 | 0.0 | 9.65243 | 5 |
CTAGGCT | 8830 | 0.0 | 9.631035 | 4 |
TATACTG | 14055 | 0.0 | 9.627145 | 5 |
TAGGCCG | 4395 | 0.0 | 9.620983 | 5 |