Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946463.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 51902748 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 26290 | 0.0 | 13.192538 | 5 |
TATACCG | 18635 | 0.0 | 13.164479 | 5 |
CTATACT | 27845 | 0.0 | 12.776481 | 4 |
CCGTGAG | 14345 | 0.0 | 11.794445 | 9 |
CATACAC | 140960 | 0.0 | 11.51233 | 3 |
ATACCGT | 17100 | 0.0 | 11.323056 | 6 |
ACATGAC | 113950 | 0.0 | 11.172764 | 8 |
TCTATAC | 33840 | 0.0 | 11.110209 | 3 |
ACACATG | 140125 | 0.0 | 11.037605 | 6 |
GTCGCGC | 3290 | 0.0 | 10.999191 | 8 |
GTATAGA | 37545 | 0.0 | 10.94926 | 1 |
CATGACA | 116495 | 0.0 | 10.90875 | 9 |
ACCGTGA | 17605 | 0.0 | 10.811474 | 8 |
GTATTAG | 31210 | 0.0 | 10.730296 | 1 |
GTGTATG | 136195 | 0.0 | 10.699062 | 1 |
TACCGTG | 14340 | 0.0 | 10.68393 | 7 |
CACATGA | 134485 | 0.0 | 10.574448 | 7 |
CTAGTAC | 18790 | 0.0 | 10.329657 | 3 |
GTATATA | 78395 | 0.0 | 10.295665 | 1 |
TCATACA | 156120 | 0.0 | 10.228865 | 2 |