Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946383.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39235992 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 2835 | 0.0 | 13.924053 | 8 |
TATACCG | 14075 | 0.0 | 12.487242 | 5 |
GTATAGA | 26820 | 0.0 | 12.378523 | 1 |
ATACCGT | 11535 | 0.0 | 11.651766 | 6 |
TCGCGCG | 3410 | 0.0 | 11.300561 | 9 |
TACCGTG | 11735 | 0.0 | 11.252853 | 7 |
CCGTGAG | 8895 | 0.0 | 11.20032 | 9 |
CTAGTAC | 15170 | 0.0 | 11.124163 | 3 |
ACCGTGA | 12890 | 0.0 | 10.062262 | 8 |
TCTATAC | 21690 | 0.0 | 9.99079 | 3 |
CTGAGCG | 35900 | 0.0 | 9.977017 | 94 |
GTACTAC | 15855 | 0.0 | 9.929375 | 6 |
GTATTAT | 32695 | 0.0 | 9.737113 | 1 |
ACATGAC | 131360 | 0.0 | 9.691372 | 8 |
CCTAGTA | 16665 | 0.0 | 9.395641 | 2 |
ACACATG | 168565 | 0.0 | 9.386832 | 6 |
CATACAC | 161965 | 0.0 | 9.385929 | 3 |
TGAGCGG | 34615 | 0.0 | 9.342525 | 94 |
CACATGA | 163235 | 0.0 | 9.295959 | 7 |
AGGTCGC | 4660 | 0.0 | 9.277805 | 6 |