FastQCFastQC Report
Tue 15 Nov 2016
SRR1946432.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946432.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28699024
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGA180100.010.5459221
CTATACT143000.09.9558294
ACTGCGC34450.09.9541768
TATACCG89100.09.9136325
TATACTG140400.09.8051265
TCTATAC164650.09.7603863
CATACAC994100.09.6569713
GTATATA405650.09.5613531
GTATTAT229050.09.54421
ACACATG1003950.09.4424146
ACATGAC793400.09.2601138
GTGTATG963450.09.1932391
CTAGTAC86200.08.9945473
TAGACCG60950.08.9420475
CACATGA966900.08.9345657
CATGACA828100.08.8720699
GATTGAG898000.08.8720257
GTCTTAG89700.08.85751
TCATACA1078750.08.8382162
GTATTAG159450.08.8158371