FastQCFastQC Report
Tue 15 Nov 2016
SRR1946345.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946345.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44137082
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG222900.014.9900385
TATACCG140800.014.5983685
TATACAG195300.013.8885985
CTATACT231050.013.7911994
CATACAC1181200.013.5279473
GTCGCGC16850.013.3684358
GTATATA608800.013.2547381
GTATAGG159050.013.0825591
TCTATAC267400.013.0747413
GTGTATG1111800.012.779721
CTAGGCT117400.012.6315674
ACACATG1207150.012.6111996
GTATAGA287650.012.6059491
ACATGAC868150.012.4815458
TAGGCTG139350.012.2918915
TACCGTG107350.012.2403187
TATACTA379900.012.1180455
CACATGA1153200.012.0780297
CATGACA894150.012.0451319
TCATACA1310050.011.9036522