FastQCFastQC Report
Tue 15 Nov 2016
SRR1946413.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946413.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39034880
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG118550.011.9762225
CATACAC1168050.011.1528023
ACACATG1135850.010.9855316
ACATGAC947550.010.8479618
GTATAGA249600.010.8307991
GTATTAG220450.010.6847631
TATACTG203000.010.6067885
CACATGA1099100.010.6037697
GTATATA571000.010.5310521
TATACAG172850.010.4714255
GTATAGG137750.010.4440051
CATGACA974750.010.4372949
GTGTATG1095900.010.2104121
CTAGTAC120800.010.118483
TCATACA1271500.010.0165782
TCTATAC238450.010.0155613
CTATACT196300.09.8190164
ATCATAC1221650.09.7212891
GTACTAG134750.09.4204641
GATTGAG1004100.09.3230547