FastQCFastQC Report
Tue 15 Nov 2016
SRR1946304.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946304.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19089604
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT98400.016.2413654
GTCGCGC7350.015.9835858
TATACTG105100.015.6945845
CATACAC473350.015.0243353
ACATGAC381350.014.8362548
CATGACA385650.014.6586469
ACACATG465650.014.6231776
TATACCG68300.014.3115975
CACATGA450950.014.0783927
GAGCGCG10450.013.9402817
TCTATAC127300.013.9203993
TATACAG90600.013.7455815
GTATATA290500.013.5152711
TCATACA524050.013.4362412
GTATAGA137100.013.2885741
GTATAGG72750.013.2008531
CTAGTAC71250.013.1282523
GTGTATG453950.013.0460031
ATCATAC534900.012.7702591
CCTATAC77750.012.6352733