Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946359.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 87154464 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 27470 | 0.0 | 15.791287 | 5 |
TATACTG | 44550 | 0.0 | 14.447542 | 5 |
CATACAC | 230300 | 0.0 | 13.964128 | 3 |
CTATACT | 46420 | 0.0 | 13.451282 | 4 |
TCTATAC | 55430 | 0.0 | 13.450015 | 3 |
GTATAGG | 29885 | 0.0 | 13.424741 | 1 |
CTAGTAC | 28415 | 0.0 | 13.168242 | 3 |
ACATGAC | 204335 | 0.0 | 13.111308 | 8 |
ACACATG | 240300 | 0.0 | 13.086364 | 6 |
TACCGTG | 21210 | 0.0 | 12.861275 | 7 |
GTATAGA | 58210 | 0.0 | 12.824121 | 1 |
CATGACA | 207145 | 0.0 | 12.81785 | 9 |
CACATGA | 233420 | 0.0 | 12.557518 | 7 |
ATACCGT | 26840 | 0.0 | 12.419481 | 6 |
TCATACA | 256835 | 0.0 | 12.372621 | 2 |
GTGTATG | 220755 | 0.0 | 12.196105 | 1 |
GTATATA | 124040 | 0.0 | 12.149934 | 1 |
TATACAG | 40565 | 0.0 | 12.140266 | 5 |
ATCATAC | 252020 | 0.0 | 12.105384 | 1 |
GTATTAG | 49850 | 0.0 | 11.836568 | 1 |