Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946422.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9712774 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 3335 | 0.0 | 13.405536 | 5 |
CCGTGAG | 3385 | 0.0 | 12.65233 | 9 |
TACCGTG | 2410 | 0.0 | 12.497391 | 7 |
GTATAGA | 6510 | 0.0 | 12.143576 | 1 |
GACCGTG | 2685 | 0.0 | 11.743213 | 7 |
ATACCGT | 3180 | 0.0 | 11.691127 | 6 |
TGTAGGG | 5720 | 0.0 | 11.351761 | 2 |
GTAGGGA | 5290 | 0.0 | 11.119522 | 3 |
CTAGTAC | 4585 | 0.0 | 10.981868 | 3 |
TAGGCCG | 860 | 1.8189894E-11 | 10.944299 | 5 |
ACCGTGA | 4580 | 0.0 | 10.686721 | 8 |
GTACTAG | 5695 | 0.0 | 10.576319 | 1 |
TATACAG | 4220 | 0.0 | 10.37115 | 5 |
GATACCC | 5145 | 0.0 | 10.336409 | 8 |
ATACCCC | 5345 | 0.0 | 10.302104 | 9 |
TCTATAC | 5935 | 0.0 | 10.228236 | 3 |
GCCGTGC | 785 | 5.2787072E-9 | 10.191916 | 8 |
GTACTAC | 5085 | 0.0 | 10.087695 | 6 |
GGGATAC | 5550 | 0.0 | 10.005653 | 6 |
TAGACCG | 3200 | 0.0 | 10.000354 | 5 |