Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946323.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 45302166 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 22255 | 0.0 | 16.287483 | 5 |
CTATACT | 23270 | 0.0 | 15.981229 | 4 |
TATACCG | 14290 | 0.0 | 15.7919655 | 5 |
TCTATAC | 27810 | 0.0 | 14.741761 | 3 |
CATACAC | 113435 | 0.0 | 13.867966 | 3 |
ACATGAC | 85070 | 0.0 | 13.393088 | 8 |
ACACATG | 110690 | 0.0 | 13.2798 | 6 |
TACCGTG | 11135 | 0.0 | 13.044094 | 7 |
GTATAGA | 30135 | 0.0 | 12.974652 | 1 |
CATGACA | 86500 | 0.0 | 12.937164 | 9 |
GTGTATG | 106255 | 0.0 | 12.903458 | 1 |
TATACAG | 19280 | 0.0 | 12.875202 | 5 |
TAGGCTG | 13405 | 0.0 | 12.696059 | 5 |
CACATGA | 106945 | 0.0 | 12.689133 | 7 |
TAATACT | 35000 | 0.0 | 12.398345 | 4 |
TCATACA | 128645 | 0.0 | 12.284581 | 2 |
ATCATAC | 126510 | 0.0 | 12.0388155 | 1 |
GTATAGG | 16075 | 0.0 | 11.941946 | 1 |
CTAGGCT | 10915 | 0.0 | 11.931253 | 4 |
CCTATAC | 16750 | 0.0 | 11.788767 | 3 |