Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946460.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28357924 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10935 | 0.0 | 14.2684145 | 5 |
TATACTG | 14750 | 0.0 | 13.700388 | 5 |
CTAGTAC | 9405 | 0.0 | 13.641466 | 3 |
CTATACT | 15445 | 0.0 | 12.840471 | 4 |
TCTATAC | 19125 | 0.0 | 12.384724 | 3 |
TATACAG | 15880 | 0.0 | 11.689691 | 5 |
CATACAC | 64220 | 0.0 | 11.650108 | 3 |
ACATGAC | 51520 | 0.0 | 11.575749 | 8 |
GTATAGG | 10895 | 0.0 | 11.441613 | 1 |
TAGTACT | 17355 | 0.0 | 11.427317 | 4 |
GTATAGA | 20625 | 0.0 | 11.426478 | 1 |
CCGTGCG | 2185 | 0.0 | 11.399713 | 9 |
GCCGTGC | 2955 | 0.0 | 11.291827 | 8 |
GTACTAG | 12435 | 0.0 | 11.19733 | 1 |
CATGACA | 52910 | 0.0 | 11.129683 | 9 |
ACACATG | 64280 | 0.0 | 11.112817 | 6 |
ATACCGT | 10705 | 0.0 | 10.975132 | 6 |
GTGTATG | 61680 | 0.0 | 10.913496 | 1 |
CCGTGAG | 6960 | 0.0 | 10.803891 | 9 |
CACATGA | 61110 | 0.0 | 10.751061 | 7 |