Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946339.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 65392180 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 21020 | 0.0 | 15.734133 | 5 |
CTAGTAC | 24455 | 0.0 | 14.216243 | 3 |
TATACTG | 33485 | 0.0 | 14.114015 | 5 |
TCTATAC | 43825 | 0.0 | 13.74317 | 3 |
CCGTGCG | 4110 | 0.0 | 13.602445 | 9 |
TACCGTG | 16080 | 0.0 | 13.351868 | 7 |
CATACAC | 158575 | 0.0 | 13.178041 | 3 |
CTATACT | 35370 | 0.0 | 13.110006 | 4 |
ATACCGT | 20850 | 0.0 | 12.956 | 6 |
GTATAGA | 45935 | 0.0 | 12.803393 | 1 |
ACACATG | 154700 | 0.0 | 12.526877 | 6 |
CCGTGAG | 17455 | 0.0 | 12.515406 | 9 |
ACATGAC | 115265 | 0.0 | 12.476068 | 8 |
CATGACA | 116020 | 0.0 | 12.204563 | 9 |
TAGTACT | 46435 | 0.0 | 12.161295 | 4 |
GTATAGG | 22765 | 0.0 | 12.06026 | 1 |
TATACAG | 30860 | 0.0 | 12.026357 | 5 |
ACCGTGA | 21880 | 0.0 | 11.981156 | 8 |
CACATGA | 151525 | 0.0 | 11.93991 | 7 |
GTACTAG | 29220 | 0.0 | 11.857653 | 1 |