Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946450.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28298060 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT | 33923 | 0.1198774756997476 | No Hit |
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 31488 | 0.11127264554531299 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGACCGC | 3545 | 0.0 | 15.925341 | 94 |
GTCGCGC | 1545 | 0.0 | 14.60157 | 8 |
CTGAGCG | 10245 | 0.0 | 13.500787 | 94 |
TATACCG | 9770 | 0.0 | 13.375828 | 5 |
TGAGCGG | 10270 | 0.0 | 13.193068 | 94 |
TCGCGCG | 1965 | 0.0 | 11.958835 | 9 |
GTATAGA | 18355 | 0.0 | 11.146368 | 1 |
ATACCGT | 8025 | 0.0 | 10.7184305 | 6 |
TATACTG | 12920 | 0.0 | 10.696835 | 5 |
CATACAC | 112680 | 0.0 | 10.387785 | 3 |
ACATGAC | 99695 | 0.0 | 10.385512 | 8 |
TCTATAC | 16250 | 0.0 | 10.269409 | 3 |
ACACATG | 120080 | 0.0 | 10.255475 | 6 |
CACATGA | 115465 | 0.0 | 10.128089 | 7 |
CTAGTAC | 9925 | 0.0 | 10.040974 | 3 |
CATGACA | 103640 | 0.0 | 9.990069 | 9 |
GTATATA | 41120 | 0.0 | 9.96239 | 1 |
CCGTGAG | 5735 | 0.0 | 9.833979 | 9 |
GTATTAT | 27045 | 0.0 | 9.773449 | 1 |
TAGGCGG | 7465 | 0.0 | 9.760507 | 4 |