Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946431.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30970018 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 13955 | 0.0 | 11.076634 | 5 |
TATACCG | 9250 | 0.0 | 10.971191 | 5 |
GTCGCGC | 1570 | 0.0 | 10.771354 | 8 |
CGCCGTA | 4095 | 0.0 | 10.2368145 | 94 |
GTATATA | 42050 | 0.0 | 10.073307 | 1 |
GTATTAT | 25640 | 0.0 | 9.992904 | 1 |
GTATAGA | 17840 | 0.0 | 9.987518 | 1 |
ACATGAC | 88255 | 0.0 | 9.937392 | 8 |
CATACAC | 112375 | 0.0 | 9.926246 | 3 |
TCTATAC | 17020 | 0.0 | 9.910804 | 3 |
ACACATG | 115900 | 0.0 | 9.69901 | 6 |
CTATACT | 14565 | 0.0 | 9.61312 | 4 |
GTATTAG | 15785 | 0.0 | 9.590131 | 1 |
CACATGA | 112825 | 0.0 | 9.417929 | 7 |
CATGACA | 92400 | 0.0 | 9.384846 | 9 |
GTATAAA | 31505 | 0.0 | 9.132405 | 1 |
TCATACA | 122355 | 0.0 | 9.074433 | 2 |
CTAGTAC | 9955 | 0.0 | 8.967809 | 3 |
GGACTTT | 97775 | 0.0 | 8.950621 | 6 |
ATCATAC | 120025 | 0.0 | 8.910928 | 1 |