FastQCFastQC Report
Tue 15 Nov 2016
SRR1946325.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946325.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21613778
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG74950.015.3611625
CTATACT115600.014.7597474
TATACTG114800.014.44982055
CATACAC536400.014.2482623
TCTATAC142350.013.9012793
ACATGAC451850.013.6856738
CCGTGAG49650.013.6284279
TACCGTG57600.013.4607427
ATACCGT66800.013.4358916
ACACATG538050.013.38841156
CATGACA463650.013.15488159
GTGTATG500050.012.9977591
CCGTGCG17150.012.8776389
ACCGTGA66750.012.7418318
CTAGTAC66500.012.722753
CACATGA516500.012.7096517
GTATAGA144450.012.609031
TCATACA597550.012.5570392
TAGTACT137550.012.2335514
GATTGAG492700.012.1505077