Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946337.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 48624938 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 15905 | 0.0 | 15.507189 | 5 |
TATACTG | 25500 | 0.0 | 14.720211 | 5 |
CTAGGCT | 13450 | 0.0 | 14.601084 | 4 |
TACCGTG | 13240 | 0.0 | 14.441774 | 7 |
TCTATAC | 30545 | 0.0 | 14.335303 | 3 |
CTATACT | 25815 | 0.0 | 13.9772 | 4 |
CATACAC | 118665 | 0.0 | 13.865151 | 3 |
TAGGCTG | 16490 | 0.0 | 13.78898 | 5 |
CTAGTAC | 16960 | 0.0 | 13.767707 | 3 |
GTATAGG | 17860 | 0.0 | 13.319416 | 1 |
GTATAGA | 32120 | 0.0 | 13.246134 | 1 |
ACACATG | 113935 | 0.0 | 12.897934 | 6 |
GCTGTCC | 13580 | 0.0 | 12.8001795 | 8 |
ATACCGT | 14050 | 0.0 | 12.639387 | 6 |
GTGTATG | 109690 | 0.0 | 12.592179 | 1 |
TATACAG | 22505 | 0.0 | 12.525055 | 5 |
ACATGAC | 84085 | 0.0 | 12.487432 | 8 |
TCATACA | 130860 | 0.0 | 12.325262 | 2 |
TAGTACT | 32500 | 0.0 | 12.258677 | 4 |
CATGACA | 84975 | 0.0 | 12.218424 | 9 |