FastQCFastQC Report
Tue 15 Nov 2016
SRR1946395.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946395.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27157818
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGC54850.021.93813994
GTCGCGC12150.013.5364088
GTATAGA161450.011.7637171
TGAGCGG258200.011.50528294
ATGGCGC179600.011.46315694
TATACCG86600.011.4494825
TCGCGCG16800.011.1882569
CTGAGCG276450.010.76275794
ACATGAC782000.010.7441598
GAGCGGG211600.010.72921494
CATACAC968700.010.5719033
TATACTG119200.010.5652515
GCGTGTA62100.010.55900692-93
GGCTGGC130350.010.45739394
ACACATG966250.010.4218776
CTAGTAC113650.010.3798133
AGCGGGC175250.010.37980994
CACATGA946650.010.28027
TCTATAC155700.010.2328423
CAGACCG72350.010.20003292-93