FastQCFastQC Report
Tue 15 Nov 2016
SRR1946408.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946408.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41081668
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG129600.010.5561295
GTACTAG158000.010.0872321
CATACAC1432300.09.7876093
ACACATG1345350.09.7710356
ACATGAC1060000.09.68825158
TATACTG194300.09.4848395
TATACAG184550.09.4764485
GTATATA569900.09.4044971
GTATAGA258650.09.3792171
GTGTATG1355100.09.3570511
CACATGA1276950.09.2778537
TCTATAC239200.09.1782253
CATGACA1106750.09.1159999
CTAGTAC134650.09.1124923
TAGTACT250600.09.0045624
TCATACA1546150.08.9699012
GTATTAT296150.08.8424551
ATCATAC1534400.08.830491
GATTGAG1275800.08.8073557
CTATACT195350.08.7837884