Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946342.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40189210 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 13410 | 0.0 | 15.816895 | 5 |
TATACTG | 21265 | 0.0 | 14.895324 | 5 |
CTATACT | 21290 | 0.0 | 14.591533 | 4 |
TCTATAC | 26015 | 0.0 | 14.3584585 | 3 |
GTATAGA | 28825 | 0.0 | 14.240972 | 1 |
TACCGTG | 10065 | 0.0 | 14.033707 | 7 |
ATACCGT | 12835 | 0.0 | 13.527748 | 6 |
GTATAGG | 14235 | 0.0 | 13.131766 | 1 |
CATACAC | 105790 | 0.0 | 13.081235 | 3 |
GTACTAG | 15485 | 0.0 | 13.042317 | 1 |
GAGCGCG | 1965 | 0.0 | 12.895876 | 7 |
CTAGTAC | 12515 | 0.0 | 12.786217 | 3 |
GTATATA | 58480 | 0.0 | 12.57714 | 1 |
ACATGAC | 82220 | 0.0 | 12.442336 | 8 |
CATGACA | 81990 | 0.0 | 12.334151 | 9 |
ACACATG | 106690 | 0.0 | 12.306759 | 6 |
GTGTATG | 100640 | 0.0 | 12.283235 | 1 |
CCGTGAG | 9895 | 0.0 | 12.140794 | 9 |
TATACTA | 37805 | 0.0 | 12.127098 | 5 |
CACATGA | 102935 | 0.0 | 12.026281 | 7 |