FastQCFastQC Report
Tue 15 Nov 2016
SRR1946431.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946431.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30970018
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG139550.011.0766345
TATACCG92500.010.9711915
GTCGCGC15700.010.7713548
CGCCGTA40950.010.236814594
GTATATA420500.010.0733071
GTATTAT256400.09.9929041
GTATAGA178400.09.9875181
ACATGAC882550.09.9373928
CATACAC1123750.09.9262463
TCTATAC170200.09.9108043
ACACATG1159000.09.699016
CTATACT145650.09.613124
GTATTAG157850.09.5901311
CACATGA1128250.09.4179297
CATGACA924000.09.3848469
GTATAAA315050.09.1324051
TCATACA1223550.09.0744332
CTAGTAC99550.08.9678093
GGACTTT977750.08.9506216
ATCATAC1200250.08.9109281