FastQCFastQC Report
Tue 15 Nov 2016
SRR1946283.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946283.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41918780
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG156250.015.2559955
TATACTG205350.014.493115
CTGAGCG105550.014.26592794
GTATAGA293600.014.13481
CTATACT215850.014.11494354
CATACAC1052900.013.2358533
ATACCGT145750.013.1281716
TACCGTG126150.013.0802327
GTCGCGC17350.013.0049538
TATACAG197750.012.8151845
TCTATAC277650.012.7175413
CCGTGAG110900.012.7152129
GTGTATG998500.012.4026631
ACACATG1040100.012.26289756
ACATGAC797450.012.1490298
ACCGTGA145650.012.0060328
GTATAGG147500.011.9304481
CATGACA823150.011.7117189
TAATACT345650.011.6437644
GTATTAT366650.011.6137921