Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946396.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 36343994 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT | 37367 | 0.10281478694939251 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 13060 | 0.0 | 12.737441 | 5 |
AGACCGG | 11710 | 0.0 | 12.081896 | 94 |
ATACCGT | 11090 | 0.0 | 11.991465 | 6 |
TACCGTG | 10900 | 0.0 | 11.72625 | 7 |
CCGTGAG | 9760 | 0.0 | 11.266385 | 9 |
GTATAGA | 22135 | 0.0 | 11.170693 | 1 |
TCTATAC | 19815 | 0.0 | 10.673103 | 3 |
CTAGTAC | 13900 | 0.0 | 10.278531 | 3 |
ACCGTGA | 12830 | 0.0 | 10.21871 | 8 |
GTACTAG | 15895 | 0.0 | 10.025662 | 1 |
CTGAGCG | 30705 | 0.0 | 9.705226 | 94 |
ACATGAC | 93850 | 0.0 | 9.65865 | 8 |
CATACAC | 146415 | 0.0 | 9.603915 | 3 |
GTATATA | 50810 | 0.0 | 9.47381 | 1 |
TAGACCG | 7785 | 0.0 | 9.356107 | 5 |
ACACATG | 147310 | 0.0 | 9.330629 | 6 |
GTACTAC | 13925 | 0.0 | 9.2464 | 6 |
CACATGA | 142485 | 0.0 | 9.231036 | 7 |
GTATTAT | 26675 | 0.0 | 9.146118 | 1 |
CCTAGTA | 14410 | 0.0 | 9.133468 | 2 |