Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946375.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34124720 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTGAGCG | 8670 | 0.0 | 15.252069 | 94 |
TATACCG | 11055 | 0.0 | 14.161747 | 5 |
CTATACT | 17990 | 0.0 | 14.112362 | 4 |
TATACTG | 16920 | 0.0 | 13.504149 | 5 |
TCTATAC | 22285 | 0.0 | 13.185835 | 3 |
TAATACT | 27285 | 0.0 | 12.354703 | 4 |
TACCGTG | 8600 | 0.0 | 12.243309 | 7 |
CATACAC | 79225 | 0.0 | 12.218964 | 3 |
GTATAGA | 23680 | 0.0 | 12.101653 | 1 |
ATACCGT | 10965 | 0.0 | 12.046873 | 6 |
CCGTGAG | 8430 | 0.0 | 11.987104 | 9 |
GTGTATG | 74540 | 0.0 | 11.766996 | 1 |
CTAGTAC | 11570 | 0.0 | 11.743694 | 3 |
ACCGTGA | 10995 | 0.0 | 11.713433 | 8 |
GAGCGCG | 2250 | 0.0 | 11.699162 | 7 |
ACACATG | 80215 | 0.0 | 11.492079 | 6 |
TAGTACT | 21390 | 0.0 | 11.407584 | 4 |
TGAGCGG | 9325 | 0.0 | 11.405155 | 94 |
ATAATAC | 29945 | 0.0 | 11.398628 | 3 |
TATACAG | 15440 | 0.0 | 11.235967 | 5 |