FastQCFastQC Report
Tue 15 Nov 2016
SRR1946351.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946351.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48302974
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG166450.016.7538455
TCTATAC318800.015.1096023
TATACTG252950.014.8850935
CTATACT250750.014.5667494
CATACAC1143800.014.4400843
CTAGTAC159250.014.0919943
ATACCGT152100.014.0756116
TACCGTG132350.013.9417947
GTATAGA343500.013.8545311
GTCGCGC17400.013.7618378
TATACAG222350.013.4708625
ACACATG1131000.013.4580476
ACATGAC930500.013.2606398
CATGACA935850.012.913919
TAGTACT312350.012.8212844
TCATACA1277400.012.6734512
CACATGA1085700.012.575777
ACTGTGC73950.012.5713658
GTATATA673150.012.548361
ATCATAC1256400.012.339431