FastQCFastQC Report
Tue 15 Nov 2016
SRR1946459.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946459.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23493006
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG80450.012.4592795
TACCGTG56600.012.3882817
ATACCGT71050.011.9219646
GTATAGA162500.011.728011
CTATACT115700.011.1438964
TCTATAC144350.010.9530943
GTATTAG123650.010.7699821
TATACTG111200.010.6220485
GTATATA347550.010.6014961
CCGTGAG54500.010.2763739
TAGACTG59750.09.9236625
TACACAG77900.09.7862635
CATACAC818250.09.70163
GTATTAA162200.09.6318541
GTATTAT201300.09.6311041
GTGTATG799400.09.6244571
ACATGAC686150.09.6160158
CTAGTAC76050.09.52874853
ACCGTGA74100.09.5266298
ACACATG826150.09.3815376