FastQCFastQC Report
Tue 15 Nov 2016
SRR1946401.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946401.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30360652
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT316580.10427312298826785No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTGAG68600.012.6042399
TACCGTG77800.011.8989167
TATACCG100400.011.70130355
ACCGTGA96450.011.2059478
ATACCGT80300.011.0603046
GTATAGA189950.010.6169671
TCTATAC171100.010.4379153
AGACCGT91000.010.27860394
TATACTG132600.010.1710625
GTACTAG133050.010.140271
TAGGCTG87100.09.8193155
CTAGTAC103900.09.7253023
GCTGGCA134100.09.67392494
GCTGTCC70650.09.6444798
CTAGGCT81600.09.5032894
GTATTAG154400.09.4688141
GTATATA425350.09.4493551
ACATGAC990900.09.4040698
GTCGCGC15250.09.2443078
GTGTATG1278000.09.0707821