Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946451.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 36553776 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 43096 | 0.11789753266529839 | No Hit |
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT | 37238 | 0.10187182850822307 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGAGCGG | 10505 | 0.0 | 16.032042 | 94 |
CTGAGCG | 11585 | 0.0 | 15.633871 | 94 |
CCGTGAG | 10825 | 0.0 | 12.634567 | 9 |
TATACCG | 10460 | 0.0 | 12.134398 | 5 |
GTATAGA | 22080 | 0.0 | 11.821649 | 1 |
CTAGTAC | 15110 | 0.0 | 10.920156 | 3 |
TAGACCG | 9800 | 0.0 | 10.793012 | 5 |
ACATGAC | 147070 | 0.0 | 10.750654 | 8 |
ACCGTGA | 14225 | 0.0 | 10.738264 | 8 |
GACCGTG | 8475 | 0.0 | 10.704221 | 7 |
TACCGTG | 8110 | 0.0 | 10.664352 | 7 |
TATACTG | 15675 | 0.0 | 10.556533 | 5 |
ATACCGT | 9630 | 0.0 | 10.494337 | 6 |
AGACCGG | 7735 | 0.0 | 10.460922 | 94 |
CACATGA | 179490 | 0.0 | 10.299619 | 7 |
CATACAC | 189680 | 0.0 | 10.280244 | 3 |
ACACATG | 185055 | 0.0 | 10.279576 | 6 |
CATGACA | 153875 | 0.0 | 10.265869 | 9 |
GTACTAG | 20070 | 0.0 | 9.982662 | 1 |
AGACCGT | 10195 | 0.0 | 9.958854 | 6 |