Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946350.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39627200 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1910 | 0.0 | 17.443966 | 8 |
TATACCG | 13735 | 0.0 | 15.647484 | 5 |
TATACTG | 20400 | 0.0 | 14.537663 | 5 |
CTAGGCT | 10870 | 0.0 | 14.505173 | 4 |
CTATACT | 20210 | 0.0 | 14.4655485 | 4 |
TCTATAC | 24840 | 0.0 | 14.187358 | 3 |
CATACAC | 100970 | 0.0 | 13.645105 | 3 |
TAGGCTG | 13225 | 0.0 | 13.5187645 | 5 |
GTATAGA | 26560 | 0.0 | 13.315678 | 1 |
GCTGTCC | 10680 | 0.0 | 13.181666 | 8 |
TATACAG | 18515 | 0.0 | 13.052424 | 5 |
ACACATG | 98685 | 0.0 | 12.924498 | 6 |
GTATATA | 56525 | 0.0 | 12.688049 | 1 |
ACATGAC | 76550 | 0.0 | 12.671136 | 8 |
ATACCGT | 11975 | 0.0 | 12.539777 | 6 |
GTGTATG | 96075 | 0.0 | 12.539302 | 1 |
CATGACA | 77665 | 0.0 | 12.392549 | 9 |
CACATGA | 94315 | 0.0 | 12.339194 | 7 |
GTATAGG | 15145 | 0.0 | 12.280677 | 1 |
GTACTAG | 15305 | 0.0 | 12.244356 | 1 |