FastQCFastQC Report
Wed 16 Nov 2016
SRR1945560.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945560.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40275086
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG212700.015.9689315
GTCGCGC15050.015.7801968
TATACCG137550.015.7673575
CTATACT213650.015.0589844
TCTATAC259550.014.9855553
TACCGTG100950.014.781287
ATACCGT120050.014.33319956
GTATAGA282750.014.2262011
CCGTGAG104200.013.9331839
ACCGTGA131200.013.83229358
CATACAC1249450.013.8039433
GAGCGCG19600.013.717327
CTAGTAC137100.013.5965913
ACATGAC937100.013.422388
TATACAG196500.013.4087695
GTATTAG229600.013.3685441
ACACATG1232850.013.3101276
CATGACA964300.012.9740719
GTGTATG1130400.012.8919161
GTATAGG140100.012.87061