FastQCFastQC Report
Wed 16 Nov 2016
SRR1945651.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945651.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences151119482
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT4514710.29875102404069914Illumina Paired End PCR Primer 2 (100% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT2746950.18177338643868565Illumina Paired End PCR Primer 2 (98% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT359150.029.1186141
TGCCGTC1602400.028.0882244-45
TATGCCG1674700.027.92340542-43
CGTATGC1786600.026.28464940-41
GAGCGGT4086900.025.747039
GCCGTCT1618400.024.85079446-47
ATGCCGT1619900.024.78607744-45
AGAGCGG4870450.024.4032978
GAGCGGC527100.024.0213329
GTATGCC1785200.023.3697342-43
GAGGGGC330200.022.8507129
CCGTCTT2025350.022.47144746-47
CTCGTAT1258450.021.89828538-39
TCGTATG1952650.021.22441940-41
CTGCTTG1813050.020.74409554-55
GGGCGCC502450.020.50200742-43
CTTCTGC2249950.019.98396950-51
CTCGGGG582500.019.68198636-37
AGACCGA2624250.018.92317230-31
CGAGACC2714450.018.50709528-29