FastQCFastQC Report
Wed 16 Nov 2016
SRR1945472.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945472.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55399482
Sequences flagged as poor quality0
Sequence length40-101
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG270650.09.4530194
GGTCGCC66250.08.11838544-45
AGAGCGT157200.07.98443379
GATCGGA352350.07.40539262
CGGAAGA373600.07.30352835
GCACACG98800.07.234944312-13
ATCGGAA384500.07.09465273
TATGCCG77050.06.66201346-47
CGCCGTA76350.06.63305146-47
AAGAGCG198050.06.59015758
GAGCGTC96150.06.527062410-11
TGGTCGC89000.06.496948742-43
GCGTCGT110050.06.43166312-13
AGCGTCG104000.06.384214410-11
TGCCGTC76050.06.335640448-49
AGAGCAC236100.06.18296249
GCCGTCT85950.06.14796650-51
GAAGAGC472700.06.13797337
ATGCCGT84300.05.824473448-49
CGTCGTG126150.05.610816512-13