Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945683.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 77515856 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 9885 | 0.0 | 15.50371 | 56 |
TATGCCG | 11780 | 0.0 | 14.967066 | 63 |
GCCGTAT | 11015 | 0.0 | 13.913143 | 57 |
GGTCGCC | 12315 | 0.0 | 13.8645 | 53 |
GAGACCG | 24300 | 0.0 | 13.750551 | 50 |
CGAGACC | 24585 | 0.0 | 13.562432 | 49 |
CGTATGC | 13905 | 0.0 | 13.309309 | 61 |
CGAGATC | 30135 | 0.0 | 12.894751 | 18 |
AGAGCGG | 29220 | 0.0 | 12.771083 | 28 |
GAGCGGT | 26580 | 0.0 | 12.668906 | 29 |
GAGCGTC | 14965 | 0.0 | 12.651986 | 19 |
CGTGTAG | 14795 | 0.0 | 12.565499 | 25 |
AGCGTCG | 14990 | 0.0 | 12.397564 | 20 |
AATGCCG | 28730 | 0.0 | 12.392024 | 13 |
GCGTCGT | 15195 | 0.0 | 12.306652 | 21 |
GCGGTTC | 27800 | 0.0 | 12.100153 | 31 |
TGGTCGC | 14330 | 0.0 | 11.841257 | 52 |
GTATGCC | 15835 | 0.0 | 11.642936 | 62 |
CCGTATC | 13795 | 0.0 | 11.388336 | 58 |
TGCCGAG | 31975 | 0.0 | 11.265917 | 15 |