FastQCFastQC Report
Wed 16 Nov 2016
SRR1945594.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945594.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68271024
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT2068950.3030495045745908Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT1210040.17724064018726304Illumina Paired End PCR Primer 2 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG607800.048.36329743
CGTATGC637350.046.99132541
ATGCCGT578250.046.45984344
GTATGCC644050.046.28847542
TGCCGTC571850.045.63031445
GCCGTCT545100.045.1451746
GAGACCG802450.045.12808230
GCGGTTC915400.044.93834311
GAGCGGT937250.044.818839
CGAGACC819050.044.5104629
AATGCCG862100.043.62628624
AGCGGTT953700.043.4652710
TCGTATG709750.043.45895440
GACCGAT797900.043.08077232
AGACCGA846450.042.46277231
AGAGCGG1020550.041.791788
CCGATAT489850.041.4323434
TGCCGAG899850.041.22903426
GTTCAGC982200.040.73452814
CAGCAGG969200.040.45672617