Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945471.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 66993726 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 36845 | 0.0 | 10.514447 | 4 |
AGAGCGT | 19805 | 0.0 | 9.369685 | 9 |
GGTCGCC | 9140 | 0.0 | 8.7216425 | 44-45 |
GATCGGA | 47670 | 0.0 | 8.272113 | 2 |
CGGAAGA | 48520 | 0.0 | 8.1573715 | 5 |
CGCCGTA | 9960 | 0.0 | 7.8944798 | 46-47 |
ATCGGAA | 52075 | 0.0 | 7.774315 | 3 |
AAGAGCG | 25025 | 0.0 | 7.638791 | 8 |
GCACACG | 13740 | 0.0 | 7.6007457 | 12-13 |
GAGCGTC | 12885 | 0.0 | 7.454264 | 10-11 |
AGCGTCG | 13420 | 0.0 | 7.0528636 | 10-11 |
AGAGCAC | 30615 | 0.0 | 7.051208 | 9 |
TGGTCGC | 11385 | 0.0 | 6.9724746 | 42-43 |
GAAGAGC | 59540 | 0.0 | 6.8911023 | 7 |
GCGTCGT | 14455 | 0.0 | 6.7248545 | 12-13 |
TATGCCG | 10360 | 0.0 | 6.5475097 | 46-47 |
GCCGTCT | 10985 | 0.0 | 6.4031267 | 50-51 |
TGCCGTC | 10115 | 0.0 | 6.36504 | 48-49 |
CGTCGTG | 16600 | 0.0 | 6.05249 | 12-13 |
CACACGT | 18630 | 0.0 | 5.8934956 | 12-13 |