FastQCFastQC Report
Wed 16 Nov 2016
SRR1945655.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945655.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58917376
Sequences flagged as poor quality0
Sequence length76
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT4844860.8223142863660459Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT1863800.31634131160220036Illumina Paired End PCR Primer 2 (100% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG862660.14641860492904504Illumina Paired End PCR Primer 2 (97% over 49bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTTC2106100.057.16539811
GAGCGGT2138600.057.082089
AGCGGTT2133700.056.74043310
TATGCCG1167650.055.96943343
CGTATGC1213000.055.55982241
AATGCCG2005250.055.11247624
GTATGCC1209200.055.09948742
GAGACCG1923800.054.9215930
CGAGACC1949400.054.72440729
ATGCCGT957250.054.68367444
GTTCAGC2155350.054.63227514
AGAGCGG2260850.054.5653728
CGGTTCA2216700.053.9926512
CAGCAGG2146050.053.9366217
TGCCGTC907550.053.9067545
GGTTCAG2222650.053.6428213
CCGATAT1248050.053.53932634
AGACCGA1959800.053.4930631
TCGTATG1373350.053.4809240
GACCGAT1881150.053.4206832