FastQCFastQC Report
Wed 16 Nov 2016
SRR1945485.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945485.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70802668
Sequences flagged as poor quality0
Sequence length76
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT144450.022.395711
CCTGCTG231100.019.7817558
CGGCATA95700.019.21278212
GCTGAAC244250.019.16327911
GGCATTC229800.019.0465772
GCATTCC252400.018.2449233
ACCGCTC178200.018.22097216
TATGCCG129900.017.7387223
GAACCGC189950.017.55589714
ATTCCTG274700.016.9952285
CCGCTCT191600.016.89040217
ATGCCGT141250.016.4378454
TGAACCG288950.016.37982613
GCATACG113200.016.0263614
GACGGCA115700.015.8616910
AACCGCT210200.015.831202515
ACGGCAT116850.015.61584911
TTCCTGC302550.015.5240386
TGCCGTC150050.015.4284035
CGTATGC152150.015.4047971