Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945439.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 55113896 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 17005 | 0.0 | 15.903629 | 5 |
CCGTGAG | 15065 | 0.0 | 15.617908 | 9 |
CTAGTAC | 20315 | 0.0 | 15.557686 | 3 |
TACCGTG | 12465 | 0.0 | 14.858765 | 7 |
TAGACCG | 13400 | 0.0 | 14.745783 | 5 |
TATACTG | 26700 | 0.0 | 14.587019 | 5 |
ACCGTGA | 19220 | 0.0 | 14.262757 | 8 |
CTATACT | 28005 | 0.0 | 14.158041 | 4 |
TCTATAC | 34695 | 0.0 | 14.089557 | 3 |
CATACAC | 168245 | 0.0 | 14.086196 | 3 |
GACCGTG | 10065 | 0.0 | 13.860509 | 7 |
ATACCGT | 15935 | 0.0 | 13.804302 | 6 |
ACATGAC | 146930 | 0.0 | 13.743731 | 8 |
GGCAGAC | 12700 | 0.0 | 13.65276 | 94 |
ACACATG | 171500 | 0.0 | 13.276083 | 6 |
CATGACA | 150160 | 0.0 | 13.224885 | 9 |
AGACCGT | 12945 | 0.0 | 13.204348 | 6 |
GTACTAC | 23520 | 0.0 | 13.097593 | 6 |
GGCTGGC | 23830 | 0.0 | 13.059711 | 94 |
GTGTATG | 150905 | 0.0 | 13.042414 | 1 |