FastQCFastQC Report
Wed 16 Nov 2016
SRR1945679.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945679.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42021772
Sequences flagged as poor quality0
Sequence length76
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA36950.09.56378956
GGTCGCC56650.08.39337853
GCCGTAT45850.08.17229857
TATGCCG42550.07.201493753
TGGTCGC70200.07.12747252
CGTATGC50850.06.977920551
AATGCCG88850.06.71612334
GAGACCG87750.06.69068540
GTATGCC53800.06.48391352
TCGGTGG92650.06.47445448
CGAGACC95350.06.360816539
CTCGGTG91450.06.114635547
CGTGTAG91100.06.078464525
CCGTATC62450.05.91536358
TGCCGAG104900.05.789262336
GGTGGTC97450.05.535405650
GACCGAT101550.05.40760842
AGACCGA112400.05.35623941
GTAGATC123000.05.352622541
GCGTCGT102400.05.33122321