FastQCFastQC Report
Wed 16 Nov 2016
SRR1945479.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945479.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42902192
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGGGT41350.016.67472639
TCGGGGG61900.015.49280238
GGGGGTC57150.014.6982340
GGGTCGC58200.013.77046442
CGCCGTA60950.012.63312946
GGTCGCC61250.012.51165843
GCGGCGC28800.012.02803611
CGGCGCG24550.011.82995712
AATGCCG118200.011.54310624
GAGACCG106600.011.52921861
CGAGACC107950.011.38551560
CTCGGGG61750.011.16599237
GGGCGCC24050.011.05796943
GACCGAT120000.010.41683963
GGCGCGG29650.010.3851813
CGGCATT61350.010.2767661
TGCCGAG134850.010.1446226
GAGCGGT138750.010.0620239
GCGCGGC20250.09.84927814
ATGCCGA145150.09.54492325