FastQCFastQC Report
Wed 16 Nov 2016
SRR1945549.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945549.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26143012
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG86550.012.3322535
CTATACT136700.010.8005234
TCTATAC170250.010.7720333
TATACTG128050.010.68555455
ACATGAC670800.010.4691748
CATACAC789550.010.4047953
ACACATG784800.010.3921486
CTAGTAC81600.010.3729563
GTATAGA183900.010.3625991
CATGACA679750.010.261579
GAGCGCG18350.010.2468127
ATACCGT82800.010.21896656
CACATGA768400.010.11230857
TACCGTG67700.010.0680227
ACCGTGA85200.09.5998528
GTGTATG756500.09.5538341
GTATATA387200.09.51528551
TCATACA853500.09.5097692
TATACAG117750.09.4639215
GTATAGG94700.09.3909011