FastQCFastQC Report
Wed 16 Nov 2016
SRR1945473.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945473.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47595490
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG157750.013.1679945
TATACTG237500.012.0113495
CTATACT249200.011.8245924
TCTATAC306550.011.5747683
GTACTAG207450.011.1787821
ATACCGT141300.011.0091176
CCGTGAG128750.010.9509699
ACCGTGA149900.010.8793228
CATACAC1324850.010.6596873
TACCGTG121300.010.5771477
CTAGTAC167250.010.3687633
ACATGAC1060900.010.36618
ACACATG1347900.010.3414196
GTATATA735200.010.2498641
GTATAGA326800.010.0901361
CACATGA1313800.010.0553757
CATGACA1093400.09.9291359
GTGTATG1255450.09.7267181
TATACAG221750.09.6854375
TAGTACT308300.09.67981154