FastQCFastQC Report
Wed 16 Nov 2016
SRR1945730.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945730.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132745546
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG4162650.31358114267728426Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGCGC181900.041.8939216
CGGCATT464950.040.386011
GAGACCG713100.040.24746361
CGAGACC719400.040.15064260
GAGCGGT1917600.038.428189
AATGCCG1554100.037.87734624
AGCGGTT1952550.037.58089410
GCGGTTC1963500.036.8137811
AGAGCGG2032500.036.644688
CGAGATC946100.036.62252829
GTTCAGC1923050.036.61543314
CAGCAGG1904050.036.48885317
CGGTTCA2062600.035.0026212
ATGCCGA1590850.034.8169225
CCGAGAT1034150.034.80038528
TGCCGAG1540100.034.76928326
AGACCGA768700.034.50280462
ACCGCGG282150.034.49527716
GGTTCAG2090300.034.4620513
GAATGCC1740050.034.42035323