FastQCFastQC Report
Wed 16 Nov 2016
SRR1945618.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945618.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35957332
Sequences flagged as poor quality0
Sequence length76
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT709110.19720873617653278Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT521470.14502466423259658Illumina Paired End PCR Primer 2 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT966550.054.6990179
AGCGGTT950500.054.61685610
GCGGTTC935900.054.3557711
CGAGACC849800.053.4562129
AATGCCG908700.053.14724
GAGACCG845250.053.1432630
GACCGAT793700.052.92048632
TGCCGAG908150.052.8066826
TATGCCG373200.052.6631443
CGTATGC410150.052.624641
GTATGCC392000.052.5413142
AGACCGA857300.052.23742731
CGGTTCA970200.052.22353412
GAATGCC933800.051.9670523
GTTCAGC972850.051.8121114
GGTTCAG983500.051.67973713
CAGGAAT941700.051.6162620
ATGCCGA940050.051.15752425
GGAATGC953300.051.02661522
AGAGCGG1045750.050.9923328