FastQCFastQC Report
Wed 16 Nov 2016
SRR1945629.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945629.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34457100
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5845461.6964457252641691No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTAT78250.025.74042557
CGCCGTA79200.025.67595356
GGTCGCC84300.025.64673653
TGGTCGC97550.021.98340852
CCGTATC96950.020.81189258
CCGAGAT161500.020.29117817
GTCGCCG115300.018.8280954
TATGCCG87300.018.80410653
CGTATCA107600.018.6221359
CGAGATC184550.018.13656218
CGTATGC94400.017.7798161
TGCCGTC90100.017.52373355
CGGCATT64700.017.2482851
TCGGTGG132500.017.12935348
ATGCCGT91800.016.9681554
GTATGCC98250.016.95663852
GCCGTCT94000.016.45934756
CTCGGTG136650.016.14973647
GGCTGAT115700.015.9735642
ATCAGCC115200.015.8002812