Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945589.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 75458928 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 18455 | 0.0 | 18.439976 | 46-47 |
CACGCCA | 38905 | 0.0 | 18.366318 | 30-31 |
GTCACGC | 39750 | 0.0 | 17.92313 | 28-29 |
CGTATGC | 20260 | 0.0 | 17.305214 | 44-45 |
CGCCAAT | 41435 | 0.0 | 17.11418 | 32-33 |
GTATGCC | 21360 | 0.0 | 17.019102 | 44-45 |
TCACGCC | 40800 | 0.0 | 16.56303 | 30-31 |
TGCCGTC | 18410 | 0.0 | 16.469385 | 48-49 |
ATGCCGT | 19475 | 0.0 | 16.026049 | 46-47 |
GCCGTCT | 19005 | 0.0 | 15.966137 | 48-49 |
AGTCACG | 43470 | 0.0 | 15.886626 | 28-29 |
GAGCACA | 89850 | 0.0 | 15.537359 | 9 |
ACGCCAA | 45865 | 0.0 | 15.158902 | 32-33 |
AGAGCAC | 92945 | 0.0 | 15.040198 | 8 |
CAGTCAC | 53220 | 0.0 | 13.651611 | 26-27 |
GCCAATA | 51625 | 0.0 | 13.389 | 34-35 |
TATCTCG | 39940 | 0.0 | 13.024391 | 38-39 |
TCCAGTC | 56910 | 0.0 | 12.780473 | 24-25 |
CTCGTAT | 29735 | 0.0 | 12.737247 | 42-43 |
CCAGTCA | 55290 | 0.0 | 12.549782 | 26-27 |