FastQCFastQC Report
Wed 16 Nov 2016
SRR1945650.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945650.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58251282
Sequences flagged as poor quality0
Sequence length76
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT5913001.015084955555141Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT1125450.19320604823770232Illumina Paired End PCR Primer 2 (100% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG795180.13650858362224544Illumina Paired End PCR Primer 2 (97% over 49bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT2381800.060.811499
GCGGTTC2350800.060.41625211
AGCGGTT2371850.060.27206410
AGAGCGG2461000.059.257788
CGGTTCA2441800.057.7971312
GTTCAGC2400600.057.73807514
CAGCAGG2379000.057.41153317
GGTTCAG2468100.056.9566713
AATGCCG2265400.056.8422824
TATGCCG1164100.056.50929343
GAGACCG2192050.056.21553430
CGAGACC2215700.056.13010829
TGCCGTC967750.055.93288445
TGCCGAG2273050.055.89433326
GACCGAT2030550.055.87558432
CGTATGC1215700.055.78450841
CAGGAAT2381650.055.77417820
GAATGCC2330000.055.7571723
GGAATGC2367850.055.71005222
ATGCCGA2297700.055.6653225