FastQCFastQC Report
Wed 16 Nov 2016
SRR1945436.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945436.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51183384
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG169950.016.0156365
TATACTG266450.015.85866455
CATACAC1460100.014.7650073
ACATGAC1290250.014.3857698
TCTATAC337600.014.1326893
TACCGTG126100.014.000027
ACACATG1505900.013.9509556
CTATACT278600.013.9327184
CATGACA1325650.013.7824789
CACATGA1455800.013.6923657
TCATACA1586950.013.2800232
GTATAGA361650.013.2093181
GTATAGG177100.013.0987441
GTGTATG1317950.013.0625341
CTAGTAC164950.012.890853
GAGCGCG31600.012.7997557
ATCATAC1588250.012.7958761
TATACAG254750.012.795165
ATACCGT160050.012.5466026
CCGTGAG118050.012.368089