FastQCFastQC Report
Wed 16 Nov 2016
SRR1945707.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945707.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72822480
Sequences flagged as poor quality0
Sequence length76
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG2573990.35346090932360447Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGCAT198750.050.642691
CGGCATT249350.041.8031162
AACCGGG257450.037.1100216
CCGGGAT187200.036.645518
GGCATTC351800.033.9241753
TGAACCG376400.032.71595414
GCTGAAC275450.031.47207312
GAACCGG318100.031.39861315
CTGAACC366550.031.31411613
CGAGATC780100.031.0406118
CCGAGAT790000.030.73993117
ATTCCTG312250.030.1574956
GCATTCC384350.029.88654
CCTGCTG278300.028.685429
TATGCCG202350.027.80075343
GGGATCG205150.027.02873820
ACCGGGA326050.026.99428217
TTCCTGC334100.026.9825337
GGATCGG217550.026.93854921
CGTATGC237050.026.06147841