Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945622.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 72790362 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 14260 | 0.0 | 25.28829 | 53 |
CGCCGTA | 13920 | 0.0 | 24.750292 | 56 |
GCCGTAT | 14180 | 0.0 | 24.411922 | 57 |
TATGCCG | 13070 | 0.0 | 22.479362 | 53 |
CGTATGC | 14515 | 0.0 | 21.106882 | 51 |
TGGTCGC | 17165 | 0.0 | 20.965994 | 52 |
CCGTATC | 17075 | 0.0 | 20.130959 | 58 |
GTATGCC | 15735 | 0.0 | 19.070602 | 52 |
CGTGTAG | 20255 | 0.0 | 18.784178 | 25 |
ATGCCGT | 14735 | 0.0 | 17.448475 | 54 |
TGCCGTC | 14220 | 0.0 | 17.415659 | 55 |
GAGCGTC | 22460 | 0.0 | 17.044863 | 19 |
AGCGTCG | 22245 | 0.0 | 17.029247 | 20 |
GCGTCGT | 22680 | 0.0 | 16.916626 | 21 |
CGTATCA | 20735 | 0.0 | 16.612358 | 59 |
GTCGTGT | 23445 | 0.0 | 16.405832 | 23 |
GCCGTCT | 14440 | 0.0 | 15.889855 | 56 |
CTCGGTG | 24340 | 0.0 | 15.571845 | 47 |
GAGACCG | 25155 | 0.0 | 15.530166 | 40 |
TCGGTGG | 24865 | 0.0 | 15.243741 | 48 |