Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945694.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 59262012 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 90705 | 0.15305757759287686 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 17140 | 0.0 | 36.1283 | 56 |
GCCGTAT | 17865 | 0.0 | 34.66108 | 57 |
GGTCGCC | 20395 | 0.0 | 34.443787 | 53 |
TGGTCGC | 21435 | 0.0 | 32.187183 | 52 |
CCGTATC | 19885 | 0.0 | 30.664053 | 58 |
CCGGCAT | 8515 | 0.0 | 28.748993 | 1 |
ATCAGCC | 23445 | 0.0 | 27.20935 | 2 |
GGCTGAT | 23330 | 0.0 | 26.86165 | 2 |
CGTATCA | 22345 | 0.0 | 26.737213 | 59 |
TCGGTGG | 29030 | 0.0 | 26.285847 | 48 |
CTCGGTG | 28835 | 0.0 | 26.17039 | 47 |
GTCGCCG | 27695 | 0.0 | 25.351902 | 54 |
TATGCCG | 19525 | 0.0 | 25.097137 | 53 |
TCGCCGT | 24830 | 0.0 | 25.035572 | 55 |
GGTGGTC | 28910 | 0.0 | 24.493952 | 50 |
ATGCCGT | 18880 | 0.0 | 22.821123 | 54 |
GAGTGTA | 33435 | 0.0 | 22.69674 | 37 |
CGTATGC | 22530 | 0.0 | 22.543554 | 51 |
CAGCCAA | 36520 | 0.0 | 22.132662 | 4 |
CGGTGGT | 32640 | 0.0 | 22.027397 | 49 |