FastQCFastQC Report
Wed 16 Nov 2016
SRR1945575.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945575.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38170432
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC396240.10380809942103876No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG129100.018.3964145
TATACTG193000.015.3239315
CATACAC1125650.015.2388473
TCTATAC253950.015.1045963
TACCGTG96850.014.8058697
ATACCGT119650.014.6810446
ACATGAC986750.014.4866028
ACACATG1153200.014.4473536
CCGTGAG94750.014.2354379
CACATGA1111100.013.9098877
CATGACA1016250.013.8632669
TCATACA1226550.013.713442
TATACAG186500.013.6715275
CTAGTAC118650.013.5962243
CTATACT205700.013.5717954
GTGTATG1020800.013.2243621
GTATAGA282250.013.1895351
ATCATAC1235700.013.1876361
CTATACC196450.013.0246974
ACCGTGA127650.012.707818