Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945566.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39922294 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1895 | 0.0 | 16.079515 | 8 |
TATACTG | 20270 | 0.0 | 15.0987625 | 5 |
TATACCG | 13200 | 0.0 | 14.868753 | 5 |
TCTATAC | 24500 | 0.0 | 14.156266 | 3 |
CTATACT | 20595 | 0.0 | 14.142473 | 4 |
CATACAC | 100280 | 0.0 | 13.606513 | 3 |
TAGGCTG | 12030 | 0.0 | 13.297714 | 5 |
TATACAG | 19230 | 0.0 | 13.212292 | 5 |
TCGCGCG | 2685 | 0.0 | 13.184254 | 9 |
GTATATA | 61370 | 0.0 | 13.079927 | 1 |
ACACATG | 102410 | 0.0 | 12.846596 | 6 |
GTGTATG | 93275 | 0.0 | 12.812906 | 1 |
GTATAGA | 26565 | 0.0 | 12.784122 | 1 |
ACATGAC | 83725 | 0.0 | 12.673595 | 8 |
GTATAGG | 14450 | 0.0 | 12.386002 | 1 |
CACATGA | 99385 | 0.0 | 12.263727 | 7 |
TCATACA | 110645 | 0.0 | 12.137518 | 2 |
CATGACA | 86060 | 0.0 | 12.121446 | 9 |
ATAATAC | 32865 | 0.0 | 12.03929 | 3 |
GTATTAT | 31720 | 0.0 | 11.947835 | 1 |