Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945615.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 51958864 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 218630 | 0.42077517322164704 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 66784 | 0.12853244828447366 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 50635 | 0.0 | 47.274082 | 43 |
TGCCGTC | 50785 | 0.0 | 46.330296 | 45 |
CGTATGC | 51700 | 0.0 | 46.095833 | 41 |
ATGCCGT | 51465 | 0.0 | 45.99547 | 44 |
GTATGCC | 52585 | 0.0 | 45.560078 | 42 |
GCCGTCT | 51375 | 0.0 | 45.33853 | 46 |
GAGACCG | 55190 | 0.0 | 43.925255 | 30 |
CGAGACC | 56735 | 0.0 | 42.994076 | 29 |
GAGCGGT | 65895 | 0.0 | 42.784298 | 9 |
AGAGCGG | 71055 | 0.0 | 42.459877 | 8 |
AATGCCG | 59050 | 0.0 | 42.3449 | 24 |
TCGTATG | 57295 | 0.0 | 41.65997 | 40 |
GCGGTTC | 66020 | 0.0 | 41.566463 | 11 |
GACCGAT | 57850 | 0.0 | 41.417152 | 32 |
CCGATAT | 43225 | 0.0 | 41.380093 | 34 |
TGCCGAG | 60095 | 0.0 | 41.279087 | 26 |
AGCGGTT | 67300 | 0.0 | 41.258198 | 10 |
AGGGTAG | 19585 | 0.0 | 40.907917 | 28 |
GGTCGCC | 30655 | 0.0 | 40.78553 | 43 |
AGACCGA | 59725 | 0.0 | 40.72095 | 31 |