FastQCFastQC Report
Wed 16 Nov 2016
SRR1945647.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945647.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90861196
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT210450.030.9114841
CGAGATC498000.023.18685318
CCGAGAT522150.022.1555117
CCTGCTG288000.020.9149978
GGCATTC302650.020.6475662
CGCCGTA154050.019.46668256
TATGCCG161800.019.46425463
GGTCGCC170400.019.2615353
GCATTCC331850.019.072473
GCTGAAC310900.018.72294611
GCCGTAT165750.018.0662257
GAGACCG356500.018.05980150
ATTCCTG345800.018.0077845
GAGATCG656850.017.58895119
CGAGACC361850.017.5578749
CGTATGC190600.017.31233461
AACCGAG299900.016.91263815
TGAACCG349350.016.69297213
TTCCTGC375350.016.6471526
TGGTCGC203000.016.35800452