FastQCFastQC Report
Wed 16 Nov 2016
SRR1945634.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945634.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44716620
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2559230.5723218794264862No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG78550.029.93104263
CGGCATT96800.026.2119371
CGTATGC94000.026.01451761
ATGCCGT87850.025.36680264
TGCCGTC85900.025.00410565
GTATGCC96800.024.64787962
GCCGTCT89200.023.76688266
GGTCGCC66750.020.57691663
TCGTATG131850.020.00826660
CGCCGTA63250.019.77831866
GCCGTAT66450.019.0393367
CCGAGAT277300.018.97782317
CGAGATC293200.017.84193218
GAGACCG194150.015.90578950
GGCATTC161150.015.0566172
CCTGCTG137300.014.8711538
GCATTCC174700.014.7857373
CGAGACC209400.014.74612149
AACCGAG145650.014.64008915
GACCGAT196100.014.6073952