Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945493.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 56395814 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 30130 | 0.0 | 9.558685 | 4 |
GGTCGCC | 6630 | 0.0 | 9.002401 | 44-45 |
AGAGCGT | 15925 | 0.0 | 8.852242 | 9 |
GATCGGA | 39870 | 0.0 | 7.6401825 | 2 |
CGGAAGA | 39980 | 0.0 | 7.296634 | 5 |
AAGAGCG | 20300 | 0.0 | 7.127802 | 8 |
GCACACG | 10495 | 0.0 | 7.070681 | 12-13 |
ATCGGAA | 43320 | 0.0 | 7.066526 | 3 |
CGCCGTA | 8165 | 0.0 | 7.031415 | 46-47 |
GAGCGTC | 10175 | 0.0 | 6.881571 | 10-11 |
TGCCGTC | 7965 | 0.0 | 6.6864686 | 48-49 |
TGGTCGC | 8880 | 0.0 | 6.6862645 | 42-43 |
AGCGTCG | 10655 | 0.0 | 6.6370583 | 10-11 |
TATGCCG | 8300 | 0.0 | 6.324158 | 46-47 |
GCGTCGT | 11475 | 0.0 | 6.1627407 | 12-13 |
GAAGAGC | 49875 | 0.0 | 6.082134 | 7 |
GCCGTCT | 8745 | 0.0 | 6.0434833 | 50-51 |
ATGCCGT | 8675 | 0.0 | 5.9228587 | 48-49 |
AGAGCAC | 26195 | 0.0 | 5.8789496 | 9 |
CGTATGC | 10430 | 0.0 | 5.47567 | 44-45 |