FastQCFastQC Report
Wed 16 Nov 2016
SRR1945615.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945615.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51958864
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT2186300.42077517322164704Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT667840.12853244828447366Illumina Paired End PCR Primer 2 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG506350.047.27408243
TGCCGTC507850.046.33029645
CGTATGC517000.046.09583341
ATGCCGT514650.045.9954744
GTATGCC525850.045.56007842
GCCGTCT513750.045.3385346
GAGACCG551900.043.92525530
CGAGACC567350.042.99407629
GAGCGGT658950.042.7842989
AGAGCGG710550.042.4598778
AATGCCG590500.042.344924
TCGTATG572950.041.6599740
GCGGTTC660200.041.56646311
GACCGAT578500.041.41715232
CCGATAT432250.041.38009334
TGCCGAG600950.041.27908726
AGCGGTT673000.041.25819810
AGGGTAG195850.040.90791728
GGTCGCC306550.040.7855343
AGACCGA597250.040.7209531