FastQCFastQC Report
Wed 16 Nov 2016
SRR1945506.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945506.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48220666
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG235100.07.31835844
GGTCGCC53900.07.07455444-45
AGAGCGT134950.06.51243079
GATCGGA322600.05.8136942
TATGCCG63800.05.76345246-47
GAGCGTC79750.05.714058410-11
CGGAAGA322250.05.64212275
TGGTCGC70500.05.600474442-43
GCACACG78900.05.56930712-13
CGCCGTA65150.05.4283346-47
ATCGGAA349700.05.42057043
AAGAGCG176100.05.38673938
TGCCGTC66750.05.234235348-49
ATGCCGT70350.05.09971148-49
AGCGTCG88350.05.02627310-11