Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945638.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 74745836 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGACCG | 18465 | 0.0 | 21.382914 | 50 |
CGAGACC | 19380 | 0.0 | 20.625566 | 49 |
TATGCCG | 8750 | 0.0 | 18.75205 | 63 |
GAGCGGT | 22585 | 0.0 | 17.511992 | 29 |
AATGCCG | 24220 | 0.0 | 17.438656 | 13 |
GACCGAT | 20285 | 0.0 | 17.036459 | 52 |
AGAGCGG | 25895 | 0.0 | 16.899897 | 28 |
AGACCGA | 23640 | 0.0 | 16.715809 | 51 |
TGCCGAG | 25465 | 0.0 | 16.598963 | 15 |
GCGGTTC | 24510 | 0.0 | 16.280392 | 31 |
CGTATGC | 10865 | 0.0 | 16.22176 | 61 |
CGAGATC | 28880 | 0.0 | 15.488616 | 18 |
AGCGGTT | 26225 | 0.0 | 15.25395 | 30 |
ATGCCGA | 28265 | 0.0 | 15.200785 | 14 |
GTATGCC | 11320 | 0.0 | 15.047373 | 62 |
CCGGCAT | 7510 | 0.0 | 14.871066 | 1 |
CCGAGAT | 30860 | 0.0 | 14.68128 | 17 |
GAATGCC | 31235 | 0.0 | 13.6891775 | 12 |
CAGCAGG | 31585 | 0.0 | 13.661861 | 6 |
GGAATGC | 32450 | 0.0 | 13.460724 | 11 |