Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945549.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26143012 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 8655 | 0.0 | 12.332253 | 5 |
CTATACT | 13670 | 0.0 | 10.800523 | 4 |
TCTATAC | 17025 | 0.0 | 10.772033 | 3 |
TATACTG | 12805 | 0.0 | 10.6855545 | 5 |
ACATGAC | 67080 | 0.0 | 10.469174 | 8 |
CATACAC | 78955 | 0.0 | 10.404795 | 3 |
ACACATG | 78480 | 0.0 | 10.392148 | 6 |
CTAGTAC | 8160 | 0.0 | 10.372956 | 3 |
GTATAGA | 18390 | 0.0 | 10.362599 | 1 |
CATGACA | 67975 | 0.0 | 10.26157 | 9 |
GAGCGCG | 1835 | 0.0 | 10.246812 | 7 |
ATACCGT | 8280 | 0.0 | 10.2189665 | 6 |
CACATGA | 76840 | 0.0 | 10.1123085 | 7 |
TACCGTG | 6770 | 0.0 | 10.068022 | 7 |
ACCGTGA | 8520 | 0.0 | 9.599852 | 8 |
GTGTATG | 75650 | 0.0 | 9.553834 | 1 |
GTATATA | 38720 | 0.0 | 9.5152855 | 1 |
TCATACA | 85350 | 0.0 | 9.509769 | 2 |
TATACAG | 11775 | 0.0 | 9.463921 | 5 |
GTATAGG | 9470 | 0.0 | 9.390901 | 1 |