Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945556.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26619712 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 9630 | 0.0 | 15.038324 | 5 |
TATACTG | 13180 | 0.0 | 12.98557 | 5 |
TCTATAC | 17915 | 0.0 | 12.86129 | 3 |
CTAGTAC | 9440 | 0.0 | 12.8016615 | 3 |
CTATACT | 14345 | 0.0 | 12.684854 | 4 |
TACCGTG | 7460 | 0.0 | 12.035301 | 7 |
CCGTGAG | 6785 | 0.0 | 11.98494 | 9 |
ATACCGT | 10025 | 0.0 | 11.91 | 6 |
GTATAGG | 9870 | 0.0 | 11.489142 | 1 |
TAGTACT | 17535 | 0.0 | 11.369336 | 4 |
GTATAGA | 20040 | 0.0 | 11.293671 | 1 |
GTATATA | 41135 | 0.0 | 11.187037 | 1 |
GTCGCGC | 1435 | 0.0 | 11.137502 | 8 |
GTATTAG | 19115 | 0.0 | 10.929402 | 1 |
ACCGTGA | 10010 | 0.0 | 10.894686 | 8 |
TAGACTG | 5850 | 0.0 | 10.770205 | 5 |
GACCGTG | 4850 | 0.0 | 10.7583 | 7 |
CATACAC | 59035 | 0.0 | 10.633517 | 3 |
CTATACC | 13325 | 0.0 | 10.515358 | 4 |
GTACTAG | 11915 | 0.0 | 10.504499 | 1 |