FastQCFastQC Report
Wed 16 Nov 2016
SRR1945514.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945514.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44732944
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG165350.013.38695
TATACTG237350.013.246475
CTATACT245750.012.0478574
GTATAGA311900.011.7761651
TCTATAC303750.011.7132493
CATACAC922500.010.8316513
TAATACT411300.010.6035694
TAGACTG109400.010.5677155
GTATAGG172750.010.4811971
ATACCGT166550.010.3276316
GTATTAG300550.010.2649151
GTGTATG891550.010.2071271
GTATATA650250.010.1688821
ACACATG950800.010.1476166
ACATGAC777700.010.122158
GTCGCGC22050.010.01758
TACACTG136150.09.9066675
GTACTAG180050.09.8211641
TATACAG254250.09.7966635
CACATGA919200.09.7755717