FastQCFastQC Report
Wed 16 Nov 2016
SRR1945625.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945625.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79807818
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG1134330.1421326918122232Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT241350.040.1263771
CGAGATC545500.030.62286818
CCTGCTG304700.030.2327428
CCGAGAT568600.029.4799317
GGCATTC329900.028.6565342
GCTGAAC315850.028.30624211
TATGCCG214050.027.64948363
GCATTCC348350.027.2181473
ATTCCTG370800.025.5850965
CGTATGC242450.025.01458261
TGAACCG350850.024.9945813
AACCGAG317150.024.76313215
ATGCCGT214650.024.10532664
TTCCTGC395300.024.000316
GTATGCC252700.023.76527862
TGCCGTC209100.023.59225865
GAGATCG711000.023.53787619
GAGACCG389350.022.88310850
GAACCGA340600.022.82216314
CGAGACC392400.022.70057349