FastQCFastQC Report
Wed 16 Nov 2016
SRR1945562.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945562.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105082766
Sequences flagged as poor quality0
Sequence length40-101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTCT299150.07.872935394-95
TGCCGTC295900.07.52839394-95
GGTCGCC374000.07.479459394-95
TATGCCG369250.07.406814694-95
GTATGCC436400.07.31920494-95
CGTATGC476850.07.17381594-95
ATGCCGT329600.06.780871492-93
CGCCGTA309150.06.26960792-93
TGGTCGC440000.06.12508592-93
GTCGCCG439950.05.86222994-95
TCGTATG631600.05.613579394-95
CTCGTAT684000.05.432143794-95
CCGTATC381850.05.3959394-95
CTCGGTG719450.05.37326794-95
GCCGTAT379100.05.105583792-93