FastQCFastQC Report
Wed 16 Nov 2016
SRR1945740.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945740.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66551082
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG552850.013.9896464
AGAGCGT301350.013.4022059
GGTCGCC156900.012.77459644-45
GATCGGA669850.011.8721022
CGCCGTA168350.011.79182646-47
TGCCGTC171750.011.72006648-49
AAGAGCG354600.011.7122358
CGGAAGA669350.011.6816795
TATGCCG173900.011.52305846-47
ATCGGAA703500.011.3567533
ATGCCGT180850.011.07856948-49
GCCGTCT182550.010.986752550-51
TGGTCGC181450.010.76517642-43
AGAGCAC409300.010.3216679
GAAGAGC797850.010.0610797
GTATGCC203350.09.86573946-47
CGTATGC206600.09.80328444-45
GCCGTAT209900.09.48954748-49
GCACACG224800.09.4264312-13
GAGCGTC226300.09.29214310-11