Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945741.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 76286140 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 77340 | 0.0 | 30.624434 | 4 |
AGAGCGT | 42435 | 0.0 | 29.19031 | 9 |
AAGAGCG | 48370 | 0.0 | 26.391388 | 8 |
GATCGGA | 91605 | 0.0 | 26.07408 | 2 |
CGGAAGA | 92025 | 0.0 | 25.83966 | 5 |
ATCGGAA | 96235 | 0.0 | 24.782946 | 3 |
GAAGAGC | 104070 | 0.0 | 23.07585 | 7 |
GGTCGCC | 26370 | 0.0 | 22.6562 | 44-45 |
AGAGCAC | 56040 | 0.0 | 22.60868 | 9 |
TGCCGTC | 26195 | 0.0 | 21.132456 | 48-49 |
CGCCGTA | 28305 | 0.0 | 21.013594 | 46-47 |
AGATCGG | 122440 | 0.0 | 20.808022 | 1 |
TATGCCG | 27770 | 0.0 | 20.299994 | 46-47 |
ATGCCGT | 27535 | 0.0 | 20.273838 | 48-49 |
GCCGTCT | 27480 | 0.0 | 20.25189 | 50-51 |
TGGTCGC | 28865 | 0.0 | 20.174763 | 42-43 |
GAGCGTC | 33310 | 0.0 | 18.807364 | 10-11 |
GTATGCC | 31030 | 0.0 | 18.5511 | 46-47 |
AGCGTCG | 34145 | 0.0 | 18.415365 | 10-11 |
GGAAGAG | 131710 | 0.0 | 18.383904 | 6 |