Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945660.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 69137866 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 521381 | 0.7541178664669806 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 200702 | 0.2902924426391755 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG | 143332 | 0.20731331221591365 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGC | 74529 | 0.10779765750941747 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 70598 | 0.10211191650028653 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGGTTC | 327505 | 0.0 | 57.41767 | 11 |
TATGCCG | 139865 | 0.0 | 57.027153 | 43 |
AGCGGTT | 332750 | 0.0 | 56.952557 | 10 |
GAGCGGT | 334375 | 0.0 | 56.807873 | 9 |
CGAGACC | 294850 | 0.0 | 56.417904 | 29 |
CGTATGC | 148075 | 0.0 | 56.250183 | 41 |
GAGACCG | 292680 | 0.0 | 56.142426 | 30 |
GTATGCC | 146835 | 0.0 | 55.885506 | 42 |
AATGCCG | 310670 | 0.0 | 55.88054 | 24 |
GACCGAT | 277195 | 0.0 | 55.675808 | 32 |
GTTCAGC | 332215 | 0.0 | 55.33978 | 14 |
AGACCGA | 294150 | 0.0 | 55.30847 | 31 |
ATGCCGT | 106845 | 0.0 | 55.28951 | 44 |
CCGATAT | 179895 | 0.0 | 55.24848 | 34 |
TGCCGTC | 98515 | 0.0 | 55.107986 | 45 |
CGGTTCA | 340110 | 0.0 | 54.950592 | 12 |
CAGCAGG | 329835 | 0.0 | 54.92821 | 17 |
TGCCGAG | 313215 | 0.0 | 54.926712 | 26 |
TCGTATG | 175170 | 0.0 | 54.75177 | 40 |
GAATGCC | 319870 | 0.0 | 54.61823 | 23 |