FastQCFastQC Report
Wed 16 Nov 2016
SRR1945495.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945495.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60539878
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG296900.012.1423724
GGTCGCC72350.011.3998544-45
AGAGCGT168500.010.6980679
CGCCGTA84850.09.86970246-47
GATCGGA391350.09.4984642
CGGAAGA407750.09.0356095
GAGCGTC99500.08.87138510-11
ATCGGAA438150.08.7594853
GCACACG105700.08.65958512-13
AAGAGCG219500.08.5093348
AGCGTCG108500.08.41456210-11
TGGTCGC96950.08.39971142-43
GCGTCGT115000.07.87827812-13
AGAGCAC267350.07.6833879
TATGCCG79400.07.356420546-47
GAAGAGC522100.07.33342847
GCCGTAT125800.06.944846648-49
TGCCGTC81300.06.6730148-49
ACGTCTG145750.06.64774816-17
CGTCGTG141000.06.541172512-13