Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945602.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 29789686 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 29832 | 0.10014204245053138 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 9965 | 0.0 | 18.822248 | 5 |
TACCGTG | 7705 | 0.0 | 18.295454 | 7 |
ATACCGT | 8660 | 0.0 | 18.034863 | 6 |
CCGTGAG | 6660 | 0.0 | 16.964882 | 9 |
TATACTG | 15645 | 0.0 | 16.366478 | 5 |
TCTATAC | 19290 | 0.0 | 16.20382 | 3 |
CTATACT | 15545 | 0.0 | 14.820641 | 4 |
ACCGTGA | 9235 | 0.0 | 14.449413 | 8 |
CATACAC | 108545 | 0.0 | 13.872799 | 3 |
ACATGAC | 81715 | 0.0 | 13.858554 | 8 |
CTAGTAC | 8935 | 0.0 | 13.570929 | 3 |
ACACATG | 107295 | 0.0 | 13.484397 | 6 |
GTATAGA | 20245 | 0.0 | 13.259778 | 1 |
CATGACA | 84670 | 0.0 | 13.169544 | 9 |
TATACAG | 15380 | 0.0 | 13.155789 | 5 |
CTATACC | 14295 | 0.0 | 13.069216 | 4 |
CACATGA | 104175 | 0.0 | 13.063459 | 7 |
ATACTGT | 14370 | 0.0 | 12.923989 | 6 |
TCATACA | 116560 | 0.0 | 12.85498 | 2 |
GTGTATG | 92530 | 0.0 | 12.82173 | 1 |