FastQCFastQC Report
Wed 16 Nov 2016
SRR1945561.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945561.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26281616
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG135150.015.0536415
TCTATAC168400.014.8488883
TATACCG84650.014.7170125
CATACAC624850.014.0566593
GAGCGCG15350.014.0131147
CTAGTAC85700.013.43860153
ACACATG642250.013.4176666
CTATACT143800.013.3378754
ACATGAC563050.013.3072848
TATACAG126650.012.9502365
CATGACA582300.012.8211919
CACATGA633450.012.6702457
GTGTATG589800.012.6547471
TCATACA694050.012.4129472
ATACCGT72400.012.3173236
TAGTACT177400.012.2009964
GTATTAG144400.012.1473361
TAGAGCG41000.012.13223655
ATCATAC709750.012.0922011
GTATATA431450.012.04103851