Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945697.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 78127686 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 11500 | 0.0 | 15.035016 | 53 |
CGCCGTA | 10030 | 0.0 | 14.832051 | 56 |
GCCGTAT | 11315 | 0.0 | 13.333094 | 57 |
TATGCCG | 10490 | 0.0 | 12.612207 | 53 |
CGTGTAG | 15695 | 0.0 | 12.577983 | 25 |
TGGTCGC | 13875 | 0.0 | 12.535346 | 52 |
AGCGTCG | 16510 | 0.0 | 12.061297 | 20 |
GCGTCGT | 17105 | 0.0 | 11.642534 | 21 |
GAGCGTC | 17440 | 0.0 | 11.598144 | 19 |
CCGTATC | 13880 | 0.0 | 10.96755 | 58 |
GTCGTGT | 18625 | 0.0 | 10.918466 | 23 |
CGTATGC | 12200 | 0.0 | 10.699071 | 51 |
GTATGCC | 13270 | 0.0 | 10.100452 | 52 |
CGTCGTG | 20175 | 0.0 | 9.992342 | 22 |
CTCGGTG | 20470 | 0.0 | 9.743665 | 47 |
GTCGCCG | 18870 | 0.0 | 9.720055 | 54 |
TCGGTGG | 20430 | 0.0 | 9.608248 | 48 |
TCGTGTA | 22140 | 0.0 | 9.375417 | 24 |
CCGGCAT | 8335 | 0.0 | 9.119509 | 1 |
GAGACCG | 22115 | 0.0 | 9.039562 | 40 |