Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945634.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44716620 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 255923 | 0.5723218794264862 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 7855 | 0.0 | 29.931042 | 63 |
CGGCATT | 9680 | 0.0 | 26.211937 | 1 |
CGTATGC | 9400 | 0.0 | 26.014517 | 61 |
ATGCCGT | 8785 | 0.0 | 25.366802 | 64 |
TGCCGTC | 8590 | 0.0 | 25.004105 | 65 |
GTATGCC | 9680 | 0.0 | 24.647879 | 62 |
GCCGTCT | 8920 | 0.0 | 23.766882 | 66 |
GGTCGCC | 6675 | 0.0 | 20.576916 | 63 |
TCGTATG | 13185 | 0.0 | 20.008266 | 60 |
CGCCGTA | 6325 | 0.0 | 19.778318 | 66 |
GCCGTAT | 6645 | 0.0 | 19.03933 | 67 |
CCGAGAT | 27730 | 0.0 | 18.977823 | 17 |
CGAGATC | 29320 | 0.0 | 17.841932 | 18 |
GAGACCG | 19415 | 0.0 | 15.905789 | 50 |
GGCATTC | 16115 | 0.0 | 15.056617 | 2 |
CCTGCTG | 13730 | 0.0 | 14.871153 | 8 |
GCATTCC | 17470 | 0.0 | 14.785737 | 3 |
CGAGACC | 20940 | 0.0 | 14.746121 | 49 |
AACCGAG | 14565 | 0.0 | 14.640089 | 15 |
GACCGAT | 19610 | 0.0 | 14.60739 | 52 |