Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945652.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 57391072 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 719819 | 1.2542351535095912 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 267281 | 0.465718779394816 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG | 101506 | 0.17686723119582085 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 83440 | 0.14538846739088615 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGC | 60756 | 0.10586315585810978 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGGTTC | 277620 | 0.0 | 57.21958 | 11 |
GAGCGGT | 283385 | 0.0 | 57.183453 | 9 |
AGCGGTT | 279920 | 0.0 | 57.143913 | 10 |
TATGCCG | 171140 | 0.0 | 55.850624 | 43 |
CGTATGC | 176670 | 0.0 | 55.407753 | 41 |
GTATGCC | 175295 | 0.0 | 55.265327 | 42 |
ATGCCGT | 144760 | 0.0 | 55.17529 | 44 |
AGAGCGG | 297505 | 0.0 | 55.11599 | 8 |
TGCCGTC | 139195 | 0.0 | 54.779686 | 45 |
CGAGACC | 259680 | 0.0 | 54.671646 | 29 |
GAGACCG | 257545 | 0.0 | 54.622425 | 30 |
GTTCAGC | 286630 | 0.0 | 54.36637 | 14 |
GCCGTCT | 126400 | 0.0 | 54.126644 | 46 |
CGGTTCA | 293415 | 0.0 | 53.981613 | 12 |
AATGCCG | 271145 | 0.0 | 53.801685 | 24 |
CCGATAT | 169690 | 0.0 | 53.771027 | 34 |
TCGTATG | 195790 | 0.0 | 53.73593 | 40 |
GGTTCAG | 293840 | 0.0 | 53.712147 | 13 |
CAGCAGG | 285675 | 0.0 | 53.605484 | 17 |
AGACCGA | 261345 | 0.0 | 53.596554 | 31 |