FastQCFastQC Report
Wed 16 Nov 2016
SRR1945630.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945630.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64949128
Sequences flagged as poor quality0
Sequence length76
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT9277641.428447199475873Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT4735640.7291306512998912Illumina Paired End PCR Primer 2 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT2682550.060.031739
GCGGTTC2669100.059.57147211
AGCGGTT2684650.059.40233610
AGAGCGG2805250.058.8716938
TATGCCG2119650.056.7203843
GTTCAGC2739000.056.639514
CGTATGC2175950.056.3521441
AATGCCG2560450.056.24748224
CAGCAGG2713100.056.19865417
CGGTTCA2809350.056.13202312
GTATGCC2169150.056.121342
ATGCCGT1918600.056.11839744
TGCCGTC1889700.056.0058245
GAGACCG2516700.055.97425530
GGTTCAG2804250.055.93285413
CGAGACC2542400.055.76214229
GCCGTCT1790800.055.53531346
CAGGAAT2680300.055.25261320
GACCGAT2511750.055.08719632
TCGTATG2296900.055.0233640