FastQCFastQC Report
Wed 16 Nov 2016
SRR1945678.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945678.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75504612
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA102100.018.47481556
GCCGTAT106200.018.0911157
TATGCCG105900.015.26634753
GGTCGCC144200.015.19141553
CCGTATC136950.014.054193558
CGTATGC120200.013.91355851
TGGTCGC159950.013.40924452
CGTGTAG188350.013.04624325
GTATGCC130550.012.38206752
ATGCCGT114250.012.12977154
GTCGTGT206100.011.87098123
GCGTCGT218850.011.3706621
AGCGTCG217800.011.3611620
GAGCGTC221850.011.16946619
CTCGGTG223500.011.00526947
TCGGTGG232950.010.66338748
TGCCGTC125100.010.60229555
CGTATCA182900.010.50431359
GCCGTCT118800.010.36915356
ATCAGCC198550.010.2742612