Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945656.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 57535970 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 567152 | 0.9857346630290581 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 106622 | 0.18531363945024304 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG | 78796 | 0.13695085005084645 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 214120 | 0.0 | 61.545353 | 9 |
GCGGTTC | 211595 | 0.0 | 61.048553 | 11 |
AGCGGTT | 213305 | 0.0 | 60.95998 | 10 |
AGAGCGG | 221950 | 0.0 | 59.886703 | 8 |
GTTCAGC | 216775 | 0.0 | 58.29196 | 14 |
CGGTTCA | 220725 | 0.0 | 58.173717 | 12 |
CAGCAGG | 216070 | 0.0 | 57.71195 | 17 |
AATGCCG | 204850 | 0.0 | 57.64232 | 24 |
GGTTCAG | 222380 | 0.0 | 57.506886 | 13 |
TATGCCG | 110765 | 0.0 | 56.568817 | 43 |
CAGGAAT | 215125 | 0.0 | 56.47996 | 20 |
GCAGGAA | 217055 | 0.0 | 56.3105 | 19 |
GAGACCG | 201705 | 0.0 | 56.205807 | 30 |
CGAGACC | 203270 | 0.0 | 56.1881 | 29 |
GAATGCC | 211880 | 0.0 | 56.156815 | 23 |
CGTATGC | 114975 | 0.0 | 55.83677 | 41 |
TGCCGAG | 209600 | 0.0 | 55.681595 | 26 |
GGAATGC | 217245 | 0.0 | 55.594307 | 22 |
AGCAGGA | 223960 | 0.0 | 55.493324 | 18 |
ATGCCGA | 211595 | 0.0 | 55.488487 | 25 |