FastQCFastQC Report
Wed 16 Nov 2016
SRR1945696.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945696.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58836244
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG1241750.211051881557905Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT218750.043.949221
GCTGAAC264800.032.65052811
CCTGCTG279500.032.605748
ATTCCTG293500.031.5319825
CCGAGAT566200.030.40172817
GGCATTC307300.030.0236592
CGAGATC576650.029.67634618
AACCGAG254400.029.47693315
TGAACCG284000.029.39684313
GCATTCC322800.029.059063
TTCCTGC331100.028.2855876
TATGCCG248950.027.76170363
CTGAACC322900.027.6556712
CGCCGTA221450.027.23450356
GGGCGCC102550.027.06704563
GAACCGA274300.026.61064114
GCCGTAT231500.026.19245157
TCCTGCT372950.025.4823067
GGTCGCC250900.025.16104153
ATGCCGT246700.024.92108764