FastQCFastQC Report
Wed 16 Nov 2016
SRR1945568.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945568.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46373122
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG243800.016.9660345
TATACCG148050.015.9217085
TACCGTG112100.014.7114187
CTATACT258300.014.6950444
TCTATAC303550.014.586083
CATACAC1266300.014.3929373
ATACCGT140100.013.7864196
ACATGAC1023800.013.7312878
ACACATG1276900.013.6698236
TATACAG218100.013.540735
CCGTGAG105950.013.3235959
CATGACA1052400.013.226129
GTATAGA332750.013.1650471
CACATGA1232650.013.1534927
GTGTATG1159250.013.077481
TCATACA1371100.012.9550032
GTATATA720550.012.7802411
GTATTAG277100.012.7569931
TAATACT382950.012.6501454
ATCATAC1364700.012.5153421