FastQCFastQC Report
Wed 16 Nov 2016
SRR1945437.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945437.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37838926
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG195500.016.7097325
CTATACT212350.014.6400734
CATACAC1029400.014.3197483
GTCGCGC15600.014.3114718
TATACCG122750.014.255615
ACATGAC902100.013.8890288
TCTATAC247100.013.5815623
ACACATG1067750.013.4269466
CATGACA919550.013.3435929
CACATGA1035000.013.075397
TATACAG183200.012.9259775
GTATAGA264600.012.9005181
TCATACA1129850.012.8722922
GTGTATG923100.012.8397261
TACCGTG91250.012.7671327
GTATAGG125600.012.6072791
TATGAGC153000.012.49581394
ATCATAC1122800.012.4434921
CCGTGAG86900.012.0747859
GACCGTG51000.012.0276187