FastQCFastQC Report
Wed 16 Nov 2016
SRR1945638.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945638.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74745836
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGACCG184650.021.38291450
CGAGACC193800.020.62556649
TATGCCG87500.018.7520563
GAGCGGT225850.017.51199229
AATGCCG242200.017.43865613
GACCGAT202850.017.03645952
AGAGCGG258950.016.89989728
AGACCGA236400.016.71580951
TGCCGAG254650.016.59896315
GCGGTTC245100.016.28039231
CGTATGC108650.016.2217661
CGAGATC288800.015.48861618
AGCGGTT262250.015.2539530
ATGCCGA282650.015.20078514
GTATGCC113200.015.04737362
CCGGCAT75100.014.8710661
CCGAGAT308600.014.6812817
GAATGCC312350.013.689177512
CAGCAGG315850.013.6618616
GGAATGC324500.013.46072411