Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945762.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 42622856 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 259914 | 0.6097995873387744 | No Hit |
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC | 197001 | 0.46219568205377887 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 9485 | 0.0 | 30.688568 | 1 |
TATGCCG | 8250 | 0.0 | 29.942171 | 63 |
ATGCCGT | 9280 | 0.0 | 26.053438 | 64 |
CGTATGC | 9840 | 0.0 | 25.741411 | 61 |
GCCGTAT | 7465 | 0.0 | 25.724596 | 67 |
TGCCGTC | 9045 | 0.0 | 25.64554 | 65 |
GGTCGCC | 7400 | 0.0 | 25.568789 | 63 |
CGCCGTA | 7315 | 0.0 | 25.29292 | 66 |
GTATGCC | 9770 | 0.0 | 25.283222 | 62 |
GCCGTCT | 9350 | 0.0 | 24.510122 | 66 |
CCGAGAT | 24005 | 0.0 | 23.629751 | 17 |
CGAGATC | 25400 | 0.0 | 22.290173 | 18 |
TCGTATG | 13785 | 0.0 | 20.16036 | 60 |
CCTGCTG | 12855 | 0.0 | 20.030195 | 8 |
GGCATTC | 14275 | 0.0 | 19.909637 | 2 |
TGGTCGC | 9085 | 0.0 | 19.51477 | 62 |
CCGTATC | 9245 | 0.0 | 19.484299 | 68 |
GCTGAAC | 13470 | 0.0 | 18.62156 | 11 |
AACCGAG | 13985 | 0.0 | 18.332804 | 15 |
GCATTCC | 15915 | 0.0 | 18.140202 | 3 |