FastQCFastQC Report
Wed 16 Nov 2016
SRR1945617.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945617.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51666884
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT1536820.29744778105836617Illumina Paired End PCR Primer 2 (98% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG365200.042.8400943
CGTATGC376850.041.6101141
ATGCCGT374500.041.36450644
GTATGCC382000.041.10442
TGCCGTC377150.041.05867845
GCCGTCT383750.040.17266546
AGAGCGG518600.038.252088
GAGCGGT489900.038.0037659
GAGACCG421900.037.5611530
TCGTATG422150.037.2442840
GCGGTTC486650.037.11615411
CGAGACC435500.036.7729229
AGCGGTT507450.035.9598610
AATGCCG459250.035.7911824
GACCGAT441100.035.5951232
CCGATAT331300.035.48341834
GGTCGCC225400.034.9921143
TGCCGAG466900.034.79312526
AGACCGA460100.034.52768331
TATCGTA343400.034.12515638