FastQCFastQC Report
Wed 16 Nov 2016
SRR1945581.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945581.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40005324
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG138450.015.1785475
TATACTG203150.014.9983125
CTATACT209300.014.9857334
CATACAC1349800.014.0085193
TCTATAC261500.013.9305443
ACATGAC1002950.013.7691598
TACCGTG100950.013.4933997
ACACATG1349500.013.4738976
CACATGA1308600.013.3403187
CATGACA1032650.013.1734819
TATACAG194500.012.9238995
TCATACA1445350.012.8989832
GTGTATG1195450.012.8259411
ATCATAC1351750.012.8058661
ATACCGT123250.012.76069456
GTCGCGC16950.012.6889498
GTATATA615400.012.5920651
GTATAGA280850.012.457731
TAGGCTG113200.012.4289255
ACTGTGC63800.012.2905558