FastQCFastQC Report
Wed 16 Nov 2016
SRR1945515.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945515.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30401250
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG154600.011.9771575
TATACCG86050.011.3054135
CTATACT162500.010.9899884
GTATATA431500.010.4734811
TCTATAC188850.010.2036773
ACATGAC699800.010.0938058
CATACAC892500.010.0370133
CATGACA707000.09.9379629
ACACATG886050.09.65876
GTATAGA194900.09.6515421
ACTGTGC46500.09.5004628
CACATGA856650.09.4415757
TCATACA964700.09.1839382
TATACAG136150.09.1473495
GTGTATG840350.09.1384921
ATCATAC944550.09.0613921
TATAGTG148750.09.0359965
GTATTAG182600.09.0139631
TATATAC429350.08.8776743
GTGCTAG47150.08.8768071