Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945491.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 86206040 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 32890 | 0.0 | 10.234375 | 3 |
TATGCCG | 12760 | 0.0 | 9.021033 | 46-47 |
GCACACG | 13310 | 0.0 | 8.398209 | 10-11 |
CGTATGC | 13650 | 0.0 | 8.366761 | 44-45 |
TGCCGTC | 14205 | 0.0 | 8.149657 | 48-49 |
GATCGGA | 43625 | 0.0 | 8.13206 | 1 |
ATGCCGT | 14710 | 0.0 | 7.952676 | 46-47 |
ATCGGAA | 45875 | 0.0 | 7.900705 | 2 |
CGGAAGA | 44985 | 0.0 | 7.897467 | 4 |
GCCGTCT | 15110 | 0.0 | 7.661541 | 48-49 |
GAGCACA | 30685 | 0.0 | 7.5738583 | 9 |
GTATGCC | 15770 | 0.0 | 7.33122 | 44-45 |
AGAGCAC | 33760 | 0.0 | 7.064197 | 8 |
ACGTCTG | 16720 | 0.0 | 6.7869964 | 14-15 |
GAGCGTC | 13715 | 0.0 | 6.696099 | 9 |
GGGCGCC | 4935 | 0.0 | 5.7977414 | 42-43 |
ACACGTC | 21800 | 0.0 | 5.63482 | 12-13 |
CGTCTGA | 22990 | 0.0 | 5.385165 | 16-17 |
GAAGAGC | 66290 | 0.0 | 5.3795958 | 6 |
ACTGACC | 23405 | 0.0 | 5.3278365 | 32-33 |