FastQCFastQC Report
Wed 16 Nov 2016
SRR1945642.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945642.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences136439128
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT344350.024.543771
CCTGCTG434100.018.8367778
GGCATTC500050.017.28682
GCATTCC515400.016.8239123
ATTCCTG635600.013.6922775
TTCCTGC676600.012.7712486
CCGAGAT620000.012.29445716-17
GGCTGAT473250.011.7067742
CTGCTGA716450.011.6953239
ATCAGCC502350.011.2252322
TCCTGCT793600.011.10909757
CGCCGTA272400.010.68167456-57
CGAGATC755950.010.26068618-19
GGTCGCC292800.010.09771852-53
CATTCCT943100.09.4980834
CAGCCAA761700.09.1549494
GTCGCCG332650.09.050858554-55
TGGCTGA636800.09.0501391
GCCAAGA784250.08.969146
CAGCAGG909650.08.7657916