FastQCFastQC Report
Wed 16 Nov 2016
SRR1945533.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945533.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27532180
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG138500.014.2855355
CTATACT144300.012.6691494
TATACCG95950.012.5388925
TCTATAC182800.011.6470773
ACTGTGC44200.011.0581268
ATACCGT105800.011.0162196
TAGACTG60800.010.8988275
TACCGTG74650.010.8913787
TATACAG158950.010.8805655
GTATAGA206850.010.4588241
GTATATA388500.010.3140481
CTATACC123950.010.23720554
GTATTAG197000.010.1223231
TAATACT271700.010.1188334
CATACAC575600.010.0188693
CCTATAC103150.09.933043
CCGTGAG56650.09.8724619
CCGTGCG20550.09.8341089
TACACTG82350.09.8158745
GTATAGG101150.09.8106361