FastQCFastQC Report
Wed 16 Nov 2016
SRR1945548.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945548.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90888256
Sequences flagged as poor quality0
Sequence length40-101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATGCC306700.07.386253494-95
GCCGTCT203550.07.373144694-95
CGTATGC341850.07.36400794-95
TATGCCG254750.07.347426494-95
TGCCGTC200400.07.29121694-95
GGTCGCC259300.07.240340794-95
ATGCCGT229350.06.568419594-95
CGCCGTA220400.06.554192-93
TGGTCGC319450.06.37344194-95
GTCGCCG328350.05.93334394-95
GATCTCG1155050.05.88135694-95
CTCGGTG549900.05.82922394-95
CCGTATC281000.05.623100894-95
GCCGTAT279400.05.37455992-93
TCGGTGG524350.05.35720794-95
CATCACG784950.05.321058394-95
TCGTATG488600.05.13485694-95