FastQCFastQC Report
Wed 16 Nov 2016
SRR1945661.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945661.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60599834
Sequences flagged as poor quality0
Sequence length76
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT4075900.6725926014912846Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT830440.13703667901136496Illumina Paired End PCR Primer 2 (100% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG818600.1350828782798316Illumina Paired End PCR Primer 2 (97% over 49bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT2445950.061.0298469
GCGGTTC2520650.060.6935211
AGCGGTT2505100.060.68608510
AGAGCGG2495850.059.2333878
GTTCAGC2603300.058.1631914
CGGTTCA2621400.057.91993312
CAGCAGG2590050.057.60011717
AATGCCG2460500.057.25449824
GGTTCAG2664450.057.20316313
TATGCCG999200.057.16746543
GAGACCG2400850.057.07128530
CGAGACC2417500.056.77013829
CGTATGC1056850.056.21739241
CAGGAAT2586100.056.1411320
GAATGCC2538700.055.97451823
GTATGCC1046900.055.97406442
TGCCGAG2502100.055.95714626
AGACCGA2419100.055.92756331
GACCGAT2251350.055.91495532
CCGATAT1576100.055.91234634