FastQCFastQC Report
Wed 16 Nov 2016
SRR1945699.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945699.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61436288
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG1984430.32300616860185305Illumina Paired End PCR Primer 2 (100% over 31bp)
TGGCTGATGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAT633140.10305635652987369Illumina Paired End PCR Primer 2 (97% over 41bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA247400.037.26902456
GCCGTAT253850.036.47244657
GGTCGCC292150.034.8189753
TGGTCGC293950.034.0240452
CCGTATC269350.033.9561258
ATCAGCC280200.031.2613872
CCGGCAT111500.030.9413471
GGCTGAT270600.030.8831842
CGTATCA292550.030.4935859
CGAGATC625150.029.75759918
CCGAGAT634800.029.17171917
CTCGGTG378550.028.55496247
TCGGTGG379950.028.47792648
TCGCCGT323900.028.31270855
GTCGCCG371950.027.38558854
GGTGGTC371300.027.31311450
CAGCCAA420800.026.8531444
TATGCCG299500.026.70961863
CGGTGGT400400.025.51123249
GAGTGTA417450.025.47703437