FastQCFastQC Report
Wed 16 Nov 2016
SRR1945474.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945474.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29153504
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG150550.013.6415195
CTATACT156250.012.9934894
TCTATAC198350.011.8704813
TATACCG102100.011.8295835
GTATTAG203950.011.5324791
GTATAGA210550.011.3943961
CTAGTAC94850.010.9005433
GTATATA430850.010.8089981
ACCGTGC40450.010.8051538
TATACAG163950.010.7493425
CCGTGAG62650.010.7272829
CTATACC135700.010.666774
TACCGTG79350.010.6607477
GTACTAG117500.010.6492781
ATACTGT168700.010.5859686
CATACAC675550.010.5672763
TAGTACT174850.010.4286514
TAATACT271900.010.1804764
ATACCGT109100.010.1659816
ACACATG676200.010.1400996