Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945672.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 69137662 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 10445 | 0.0 | 22.342129 | 56 |
GGTCGCC | 12280 | 0.0 | 20.485699 | 53 |
GCCGTAT | 11845 | 0.0 | 19.820078 | 57 |
TATGCCG | 9950 | 0.0 | 18.585175 | 53 |
TGGTCGC | 14500 | 0.0 | 17.403124 | 52 |
CCGTATC | 13575 | 0.0 | 17.242405 | 58 |
CGTATGC | 11640 | 0.0 | 16.167513 | 51 |
GTATGCC | 12215 | 0.0 | 15.321825 | 52 |
ATGCCGT | 11130 | 0.0 | 14.667146 | 54 |
TGCCGTC | 11220 | 0.0 | 14.08345 | 55 |
CGTGTAG | 18970 | 0.0 | 13.579576 | 25 |
GCCGTCT | 11150 | 0.0 | 13.04572 | 56 |
CGTATCA | 17940 | 0.0 | 13.027568 | 59 |
CTCGGTG | 21165 | 0.0 | 12.535388 | 47 |
TCGGTGG | 21530 | 0.0 | 12.517188 | 48 |
GGTGGTC | 20855 | 0.0 | 12.283456 | 50 |
GAGACCG | 21025 | 0.0 | 11.805393 | 40 |
GTCGCCG | 22050 | 0.0 | 11.579702 | 54 |
GTCGTGT | 22535 | 0.0 | 11.524373 | 23 |
AATGCCG | 22040 | 0.0 | 11.260172 | 34 |