FastQCFastQC Report
Wed 16 Nov 2016
SRR1945541.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945541.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34475168
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG168700.013.3761745
CTAGTAC122550.012.239863
TAGACTG78450.011.9851325
GTATAGA234850.011.94642451
GTATTAG255700.011.8743881
CTATACT180050.011.6729684
ACTGTGC61850.011.093678
TCTATAC223300.010.9710463
TATACCG122700.010.9578975
TAGTACT205700.010.78883654
TAATACT341300.010.6077034
GTATATA475000.010.415771
TATACAG202650.010.392915
CCTAGTA132400.010.2287192
GTGTATG523700.010.2112291
ATACCGT143350.010.1635266
TACCGTG85550.09.6682357
ATACTGT222350.09.6596066
GTATAGG132200.09.6142321
CTAATAC253100.09.6050023