FastQCFastQC Report
Wed 16 Nov 2016
SRR1945490.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945490.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33784464
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGTC75100.018.645879
TCGGAAG193550.016.1637943
GATCGGA220050.014.5832841
CGGAAGA217450.014.5810854
ATCGGAA230950.014.0141422
AGAGCGT109200.012.9954318
CGCCGTA55950.012.76668546-47
TATGCCG68100.012.52460946-47
CGTATGC69450.012.45085444-45
GGTCGCC55900.012.23456242-43
GCCGTCT72900.012.12037648-49
TGCCGTC72150.011.92066648-49
GAGCACA140000.011.9153469
GCACACG72600.011.90837610-11
ATGCCGT74900.011.73260546-47
AAGAGCG129550.011.6427437
GCCGTAT64200.011.63849346-47
GTATGCC78400.011.4790644-45
AGAGCAC154300.011.115618
GAAGAGC312300.010.2309726