Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945572.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 32556298 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 40100 | 0.12317125245628358 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10540 | 0.0 | 17.049477 | 5 |
TATACTG | 15765 | 0.0 | 16.0606 | 5 |
TCTATAC | 19420 | 0.0 | 15.022392 | 3 |
GTCGCGC | 1425 | 0.0 | 14.780541 | 8 |
CTAGTAC | 11305 | 0.0 | 14.666905 | 3 |
TACCGTG | 7645 | 0.0 | 14.302775 | 7 |
ATACCGT | 9065 | 0.0 | 14.2869 | 6 |
CATACAC | 114645 | 0.0 | 13.677166 | 3 |
TATACAG | 16255 | 0.0 | 13.674203 | 5 |
ACATGAC | 98555 | 0.0 | 13.491064 | 8 |
CTATACT | 16985 | 0.0 | 13.35034 | 4 |
GTATAGA | 21725 | 0.0 | 13.139779 | 1 |
ACACATG | 114490 | 0.0 | 13.085093 | 6 |
TAGTACT | 20850 | 0.0 | 12.938912 | 4 |
GTATATA | 51780 | 0.0 | 12.85784 | 1 |
CACATGA | 111620 | 0.0 | 12.827347 | 7 |
CATGACA | 103315 | 0.0 | 12.748043 | 9 |
CCGTGAG | 7255 | 0.0 | 12.724395 | 9 |
GTGTATG | 103305 | 0.0 | 12.703338 | 1 |
TCATACA | 123330 | 0.0 | 12.64926 | 2 |