Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945594.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 68271024 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 206895 | 0.3030495045745908 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 121004 | 0.17724064018726304 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 60780 | 0.0 | 48.363297 | 43 |
CGTATGC | 63735 | 0.0 | 46.991325 | 41 |
ATGCCGT | 57825 | 0.0 | 46.459843 | 44 |
GTATGCC | 64405 | 0.0 | 46.288475 | 42 |
TGCCGTC | 57185 | 0.0 | 45.630314 | 45 |
GCCGTCT | 54510 | 0.0 | 45.14517 | 46 |
GAGACCG | 80245 | 0.0 | 45.128082 | 30 |
GCGGTTC | 91540 | 0.0 | 44.938343 | 11 |
GAGCGGT | 93725 | 0.0 | 44.81883 | 9 |
CGAGACC | 81905 | 0.0 | 44.51046 | 29 |
AATGCCG | 86210 | 0.0 | 43.626286 | 24 |
AGCGGTT | 95370 | 0.0 | 43.46527 | 10 |
TCGTATG | 70975 | 0.0 | 43.458954 | 40 |
GACCGAT | 79790 | 0.0 | 43.080772 | 32 |
AGACCGA | 84645 | 0.0 | 42.462772 | 31 |
AGAGCGG | 102055 | 0.0 | 41.79178 | 8 |
CCGATAT | 48985 | 0.0 | 41.43234 | 34 |
TGCCGAG | 89985 | 0.0 | 41.229034 | 26 |
GTTCAGC | 98220 | 0.0 | 40.734528 | 14 |
CAGCAGG | 96920 | 0.0 | 40.456726 | 17 |