Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945587.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 64656644 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 638811 | 0.9880051924748832 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 369162 | 0.5709575647013166 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 91577 | 0.14163586962540153 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 164805 | 0.0 | 53.56689 | 43 |
CGTATGC | 168065 | 0.0 | 52.85185 | 41 |
GTATGCC | 168985 | 0.0 | 52.77319 | 42 |
ATGCCGT | 154075 | 0.0 | 52.74018 | 44 |
TGCCGTC | 154060 | 0.0 | 52.22407 | 45 |
GCCGTCT | 146920 | 0.0 | 52.213417 | 46 |
TCGTATG | 174680 | 0.0 | 51.398514 | 40 |
GAGACCG | 212095 | 0.0 | 50.80183 | 30 |
GACCGAT | 209545 | 0.0 | 50.581028 | 32 |
CGAGACC | 215085 | 0.0 | 50.475574 | 29 |
AGACCGA | 214910 | 0.0 | 50.055016 | 31 |
CCGATAT | 124480 | 0.0 | 49.850224 | 34 |
TATCGTA | 114620 | 0.0 | 49.485786 | 38 |
CCGTCTT | 156005 | 0.0 | 48.870102 | 47 |
ACCGATA | 133200 | 0.0 | 47.95574 | 33 |
ATATCGT | 120110 | 0.0 | 47.8729 | 37 |
CGATATC | 128865 | 0.0 | 47.469 | 35 |
CCGAGAC | 231105 | 0.0 | 47.246613 | 28 |
GATATCG | 128825 | 0.0 | 47.18716 | 36 |
AATGCCG | 235310 | 0.0 | 47.114243 | 24 |