FastQCFastQC Report
Wed 16 Nov 2016
SRR1945635.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945635.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71521750
Sequences flagged as poor quality0
Sequence length76
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC156300.014.07833661
GTATGCC157100.013.82883762
TCGTATG165600.013.58518660
TATCGTA133600.010.05697658
AGAGCGG423450.09.20982328
CAGGAAT389200.09.2038219
GAGCGGT380000.08.99104929
TCGGAAG450400.08.63746223
GGAATGC417350.08.61842811
AGCGGTT395800.08.52556530
GAGTGTA155450.08.40187837
GGTTCAG454500.08.0534592
AAGGGGG234050.08.04423545
ATCGGAA486450.07.97637422
CGGTTCA470150.07.86416441
TCGTGTA173000.07.710918424
AGACCGA449950.07.69821851
AAGAGCG498650.07.695364527
CGTGTAG173650.07.681694525
GAATGCC491300.07.56697812