Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945715.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39722076 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGGGGT | 4525 | 0.0 | 24.617586 | 39 |
TCGGGGG | 7125 | 0.0 | 22.732035 | 38 |
GGGGGTC | 6210 | 0.0 | 21.33407 | 40 |
GGGCGCC | 2880 | 0.0 | 21.027939 | 43 |
GGGTCGC | 6145 | 0.0 | 20.643255 | 42 |
GGGGGGC | 3960 | 0.0 | 20.5539 | 40 |
CGGCATT | 7275 | 0.0 | 19.587326 | 1 |
GCGGCGC | 3080 | 0.0 | 19.37285 | 11 |
CGAGACC | 13780 | 0.0 | 18.938173 | 60 |
CCGCGGG | 4005 | 0.0 | 18.81144 | 17 |
CTCGGGG | 6840 | 0.0 | 18.701426 | 37 |
GAGACCG | 13835 | 0.0 | 18.68594 | 61 |
GGTCGCC | 7055 | 0.0 | 17.068283 | 43 |
GACCGAT | 15180 | 0.0 | 16.474941 | 63 |
GGCGCCG | 3815 | 0.0 | 16.144241 | 44 |
GGGGGCG | 4830 | 0.0 | 16.12166 | 41 |
TCCTGCG | 5940 | 0.0 | 16.116356 | 7 |
CCGATAT | 11370 | 0.0 | 15.858854 | 65 |
AGACCGA | 16570 | 0.0 | 15.750556 | 62 |
CGCCGTA | 6495 | 0.0 | 15.687045 | 46 |