FastQCFastQC Report
Wed 16 Nov 2016
SRR1945537.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945537.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27373802
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG145150.012.7569745
GTATTAG207650.011.799121
TAGACTG62300.011.5417565
CTATACT153150.011.5382344
TCTATAC186150.011.4122813
TATACCG95400.011.1826815
TACACTG76500.011.119515
TATACAG161600.010.5277545
GTATAGG103500.010.4957981
GTATAGA193400.010.4314491
TAATACT267450.010.3851654
CTAGACT65900.010.2694114
GTATATA377800.09.9704421
ACTGTGC43100.09.9228538
CCTAGAC49750.09.91957953
ACAGTGC54850.09.7678888
GTGTAAG100300.09.6116241
CCGTGCG20550.09.6053489
CATACAC488650.09.5702273
CTAGTAC83800.09.5345893