FastQCFastQC Report
Wed 16 Nov 2016
SRR1945648.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945648.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87239122
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG929000.10648892133508633Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT212600.035.017091
CGAGATC509250.026.6865618
CCGAGAT524600.026.03425217
TATGCCG173150.024.4727963
CCTGCTG291350.024.0010228
GGCATTC309450.023.3147432
CGTATGC197850.022.65517461
GCATTCC325100.022.3522823
GCTGAAC303950.022.34143811
GAGACCG342500.021.92398650
CGAGACC350800.021.45130749
GAGATCG634250.021.37667719
GTATGCC207350.021.06046562
ATGCCGT176650.020.52144664
ATTCCTG356900.020.427245
AACCGAG309200.019.82304815
TGCCGTC169900.019.68907765
GGTCGCC174500.019.55109263
AGCGTCG277050.019.37720730
TTCCTGC381150.019.3581476