FastQCFastQC Report
Wed 16 Nov 2016
SRR1945713.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945713.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83681806
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT114000.07.6346611
AATGCCG139650.06.954116313
CGAGATC262600.06.199502518
GAGACCG155300.05.682342550
GGTCGCC82350.05.622565363
AGAGCGG190000.05.56885628
GAGCGGT163300.05.495954529
GAGATCG299400.05.472505619
CGAGACC165000.05.45182749
TCGGAAG307950.05.37498423
TATGCCG72900.05.34096463
CGCCGTA79800.05.31005266
TGCCGAG188350.05.174598715
CCGAGAT345750.05.142831317
GCGGTTC182000.05.10417631
AAGAGCG306850.05.098240427