FastQCFastQC Report
Wed 16 Nov 2016
SRR1945690.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945690.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80753762
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA112900.019.92030356
GCCGTAT124650.018.01459957
GGTCGCC145350.017.13180753
TATGCCG106650.016.85545553
CCGTATC145600.015.18221558
CGTATGC124800.014.98973351
TGGTCGC165600.014.73928652
GTATGCC135050.014.03414952
CGTGTAG204800.013.23456625
ATGCCGT114000.012.73269354
CGTATCA197550.011.72078359
GTCGTGT231000.011.58142623
GCGTCGT236550.011.3388421
CTCGGTG243400.011.27748247
AGCGTCG237100.011.17969920
GAGACCG249300.011.16026240
TGTAGGG243550.011.13186527
TGCCGTC124250.011.11942455
GAGCGTC240850.011.09277419
TCGTATG181850.011.05611450