FastQCFastQC Report
Wed 16 Nov 2016
SRR1945567.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945567.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46046168
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC513010.11141209405308168No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG245150.016.1221835
CTATACT256050.015.3133584
GAGCGCG27150.014.8545617
CATACAC1260250.014.276313
TATACCG154100.014.2197965
TCTATAC302550.013.9965753
TATACAG231550.013.8372065
ACATGAC1037050.013.6674078
ACACATG1274800.013.6177296
CACATGA1247750.013.2377727
CATGACA1063850.013.2051499
GTGTATG1159900.012.9477591
TCATACA1371450.012.7889182
TAGACCG110800.012.699225
GTATAGA325550.012.632551
GACCGTG70650.012.3682887
ATCATAC1393400.012.3099481
ACTGTGC78050.012.2864828
TATATAC726800.012.2509583
GTATAGG163700.012.2467971