Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945436.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 51183384 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 16995 | 0.0 | 16.015636 | 5 |
TATACTG | 26645 | 0.0 | 15.8586645 | 5 |
CATACAC | 146010 | 0.0 | 14.765007 | 3 |
ACATGAC | 129025 | 0.0 | 14.385769 | 8 |
TCTATAC | 33760 | 0.0 | 14.132689 | 3 |
TACCGTG | 12610 | 0.0 | 14.00002 | 7 |
ACACATG | 150590 | 0.0 | 13.950955 | 6 |
CTATACT | 27860 | 0.0 | 13.932718 | 4 |
CATGACA | 132565 | 0.0 | 13.782478 | 9 |
CACATGA | 145580 | 0.0 | 13.692365 | 7 |
TCATACA | 158695 | 0.0 | 13.280023 | 2 |
GTATAGA | 36165 | 0.0 | 13.209318 | 1 |
GTATAGG | 17710 | 0.0 | 13.098744 | 1 |
GTGTATG | 131795 | 0.0 | 13.062534 | 1 |
CTAGTAC | 16495 | 0.0 | 12.89085 | 3 |
GAGCGCG | 3160 | 0.0 | 12.799755 | 7 |
ATCATAC | 158825 | 0.0 | 12.795876 | 1 |
TATACAG | 25475 | 0.0 | 12.79516 | 5 |
ATACCGT | 16005 | 0.0 | 12.546602 | 6 |
CCGTGAG | 11805 | 0.0 | 12.36808 | 9 |