FastQCFastQC Report
Wed 16 Nov 2016
SRR1945612.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945612.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63072864
Sequences flagged as poor quality0
Sequence length76
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT18733172.970083933401217Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT7897151.2520677672096832Illumina Paired End PCR Primer 2 (100% over 50bp)
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG1934430.30669766319791664Illumina Paired End PCR Primer 2 (100% over 31bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG919870.14584243391896712Illumina Paired End PCR Primer 2 (97% over 49bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGC650790.10318066419181472Illumina Paired End PCR Primer 2 (97% over 49bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGGGGC483500.056.8283589
TATGCCG3817250.056.1422643
TGCCGTC3497650.055.98660745
ATGCCGT3532900.055.97659744
GCCGTCT3365100.055.82277746
CGTATGC3877600.055.78975741
GTATGCC3879850.055.64269642
GCGGTTC4812500.055.07164811
GAGACCG4280550.054.9939430
TCGTATG3993200.054.92046740
CGAGACC4318750.054.87680429
AGCGGTT4860350.054.872510
AGGGGCG541100.054.8424210
GAGCGGT4938600.054.73099
GACCGAT4269600.054.60539632
CCGATAT2900700.054.5906334
TATCGTA2791000.054.45361738
CCGTCTT3442800.054.44065547
AGACCGA4322700.054.43178631
CTGCTTG1841850.054.3972654