FastQCFastQC Report
Wed 16 Nov 2016
SRR1945470.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945470.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102414212
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG480600.07.15497884
GGTCGCC106000.06.52057544-45
AGAGCGT264000.06.25752359
GATCGGA627250.05.74461752
GCACACG162600.05.693618312-13
TATGCCG141950.05.682235246-47
GCCGTCT151700.05.57887850-51
TGCCGTC140900.05.482958348-49
CGCCGTA128000.05.461308546-47
CGGAAGA646300.05.44234665
ATGCCGT154150.05.37615448-49
GAGCGTC155450.05.358408510-11
ATCGGAA703400.05.14373833
AAGAGCG347250.05.13147268
GTATGCC180800.05.017285346-47