FastQCFastQC Report
Wed 16 Nov 2016
SRR1945631.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945631.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60838074
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT4427030.7276742521467724Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT2139110.35160712023855323Illumina Paired End PCR Primer 2 (100% over 50bp)
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG860300.1414081583187528Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT1366550.051.972669
GCGGTTC1369550.050.91421511
TATGCCG1067200.050.6991143
AGAGCGG1460050.050.5373888
AGCGGTT1389100.050.49389310
CGTATGC1096100.050.02079841
TGCCGTC1015850.049.88426245
GTATGCC1094100.049.82359342
ATGCCGT1034500.049.77583744
GCCGTCT997450.049.31596846
GAGACCG1259000.048.829430
CGAGACC1278300.048.45889329
TCGTATG1163150.047.80834240
GACCGAT1244100.047.46101832
AGACCGA1299300.047.00564231
CCGATAT811800.046.66729734
AATGCCG1391300.046.05301324
GTTCAGC1483700.045.82248314
TATCGTA795100.045.60856238
CAGCAGG1482000.045.1231717