Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945518.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35731254 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 18760 | 0.0 | 12.876412 | 5 |
TAGACTG | 8535 | 0.0 | 11.838578 | 5 |
CTATACT | 19800 | 0.0 | 11.7253475 | 4 |
GTATTAG | 26470 | 0.0 | 11.460017 | 1 |
GTATAGA | 24845 | 0.0 | 11.11165 | 1 |
TCTATAC | 23855 | 0.0 | 11.072642 | 3 |
TATACCG | 12165 | 0.0 | 10.894357 | 5 |
ACTGTGC | 6185 | 0.0 | 10.56205 | 8 |
TATACAG | 21350 | 0.0 | 10.477886 | 5 |
TAATACT | 36610 | 0.0 | 10.47501 | 4 |
CATACAC | 67005 | 0.0 | 10.163787 | 3 |
GTATAGG | 13730 | 0.0 | 10.139131 | 1 |
CCGTGCG | 2675 | 0.0 | 10.014466 | 9 |
TAGACAG | 10430 | 0.0 | 10.00307 | 5 |
ATACCGT | 13205 | 0.0 | 9.894021 | 6 |
GTATAAT | 34075 | 0.0 | 9.799457 | 1 |
TACACTG | 11380 | 0.0 | 9.704881 | 5 |
ATAATAC | 37870 | 0.0 | 9.69282 | 3 |
GTACTAG | 12525 | 0.0 | 9.687717 | 1 |
ATACTGT | 22940 | 0.0 | 9.669745 | 6 |