Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945505.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 61521972 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 29160 | 0.0 | 6.7054796 | 4 |
GGTCGCC | 6290 | 0.0 | 6.692195 | 44-45 |
AGAGCGT | 16575 | 0.0 | 6.524848 | 9 |
CGCCGTA | 7520 | 0.0 | 5.7574296 | 46-47 |
TATGCCG | 7560 | 0.0 | 5.57546 | 46-47 |
TGCCGTC | 8275 | 0.0 | 5.543893 | 48-49 |
GAGCGTC | 9610 | 0.0 | 5.5323496 | 10-11 |
CGGAAGA | 39855 | 0.0 | 5.4613147 | 5 |
ATGCCGT | 8845 | 0.0 | 5.368159 | 48-49 |
TGGTCGC | 8770 | 0.0 | 5.339428 | 42-43 |
GCCGTCT | 9045 | 0.0 | 5.307666 | 50-51 |
AGCGTCG | 10630 | 0.0 | 5.300729 | 10-11 |
AAGAGCG | 21175 | 0.0 | 5.2790504 | 8 |
GCACACG | 9900 | 0.0 | 5.234484 | 12-13 |
GATCGGA | 38845 | 0.0 | 5.2079663 | 2 |
GCGTCGT | 11195 | 0.0 | 5.1294065 | 12-13 |