Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945659.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 67512456 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 517731 | 0.7668673762957164 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG | 126632 | 0.18756835035004502 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 125907 | 0.1864944744418719 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 80955 | 0.11991120571883801 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 127975 | 0.0 | 56.77689 | 43 |
GAGACCG | 322905 | 0.0 | 56.038517 | 30 |
CGAGACC | 325350 | 0.0 | 55.94747 | 29 |
CGTATGC | 136005 | 0.0 | 55.91751 | 41 |
GTATGCC | 133765 | 0.0 | 55.907238 | 42 |
GACCGAT | 297150 | 0.0 | 55.728294 | 32 |
AGACCGA | 321685 | 0.0 | 55.52249 | 31 |
CCGATAT | 202340 | 0.0 | 55.324398 | 34 |
AATGCCG | 335680 | 0.0 | 55.01127 | 24 |
TGCCGTC | 96355 | 0.0 | 54.686398 | 45 |
ATGCCGT | 101585 | 0.0 | 54.672115 | 44 |
GCGGTTC | 378810 | 0.0 | 54.37717 | 11 |
ACCGATA | 212795 | 0.0 | 54.152863 | 33 |
TGCCGAG | 342720 | 0.0 | 54.10079 | 26 |
TCGTATG | 167900 | 0.0 | 54.05221 | 40 |
CGATATC | 204765 | 0.0 | 54.041237 | 35 |
GAATGCC | 346615 | 0.0 | 53.88354 | 23 |
AGCGGTT | 384940 | 0.0 | 53.852165 | 10 |
TATCGTA | 138415 | 0.0 | 53.83892 | 38 |
CCGAGAC | 340200 | 0.0 | 53.741173 | 28 |