FastQCFastQC Report
Wed 16 Nov 2016
SRR1945475.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945475.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30784692
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG100650.012.980535
TATACTG159250.011.9519015
CATACAC984100.011.155693
GCCGTGC31650.010.9882158
ACATGAC769300.010.9107578
CTATACT157050.010.6530384
CCGTGCG17700.010.620949
CCGTGAG71350.010.6049389
ATACCGT101150.010.5932786
ACACATG1000150.010.5678276
TCTATAC193600.010.4867573
GTATAGA213450.010.4461031
CATGACA793050.010.4419499
GTATATA467050.010.3135621
CACATGA992050.010.2751327
TACCGTG77500.010.2481727
TATACAG145600.010.1996945
GACCGTG41700.010.03033357
TCATACA1084250.010.0299522
GTATAGG104800.09.8749181