Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945596.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37339616 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12765 | 0.0 | 17.025171 | 5 |
TATACTG | 19985 | 0.0 | 15.51574 | 5 |
TACCGTG | 9045 | 0.0 | 15.357674 | 7 |
TCTATAC | 24980 | 0.0 | 15.157734 | 3 |
CCGTGAG | 9940 | 0.0 | 14.74111 | 9 |
CATACAC | 105150 | 0.0 | 14.186475 | 3 |
ATACCGT | 12045 | 0.0 | 13.950726 | 6 |
TATACAG | 18575 | 0.0 | 13.919306 | 5 |
ACCGTGA | 12680 | 0.0 | 13.817511 | 8 |
CTATACT | 21195 | 0.0 | 13.720859 | 4 |
GTATAGA | 27410 | 0.0 | 13.3526745 | 1 |
ACACATG | 105785 | 0.0 | 13.266916 | 6 |
ACATGAC | 79040 | 0.0 | 13.220685 | 8 |
GACCGTG | 5855 | 0.0 | 13.010511 | 7 |
CATGACA | 80330 | 0.0 | 12.863239 | 9 |
GTGTATG | 94800 | 0.0 | 12.837622 | 1 |
TCATACA | 115175 | 0.0 | 12.792662 | 2 |
TAGACCG | 8780 | 0.0 | 12.758983 | 5 |
CTAGTAC | 12460 | 0.0 | 12.694823 | 3 |
CACATGA | 103350 | 0.0 | 12.668992 | 7 |