FastQCFastQC Report
Wed 16 Nov 2016
SRR1945597.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945597.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46734894
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG238350.017.1452665
TATACCG158000.016.2503285
CATACAC1500700.015.25777153
TCTATAC305000.015.0440313
TACCGTG120900.014.7880917
CTATACT260700.014.7128524
ACATGAC1128300.014.7099748
ACACATG1484800.014.4404096
GTGTATG1331550.014.3062461
CATGACA1175250.014.0688879
CTAGTAC142800.013.9949313
CACATGA1430700.013.9654327
TAGGCTG129500.013.9444015
TCATACA1613950.013.9095432
ATACCGT136100.013.8937616
ATCATAC1551800.013.7028091
CCGTGAG104100.013.6019139
GTATAGA322200.013.5102961
TATACAG239250.013.4848195
GTCGCGC22650.013.45268