FastQCFastQC Report
Wed 16 Nov 2016
SRR1945576.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945576.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35480006
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG185400.016.5808145
TATACCG111700.015.9268115
CATACAC1081600.014.7204143
TCTATAC229250.014.3866593
ACACATG1067700.014.1272086
CTATACT195450.013.9857454
ACATGAC800700.013.7675338
GTGTATG978400.013.4766691
CACATGA1024050.013.4559837
TCATACA1168000.013.4411232
CATGACA811200.013.3573179
TACCGTG87000.013.3404967
GTATAGA247400.013.093561
ATCATAC1162300.013.0689421
TATACAG167300.012.9908425
GTATAGG135200.012.8402631
GTATATA538600.012.8096391
GTATTAG213600.012.7147061
CTAGTAC106500.012.70717053
ATACCGT100500.012.5740316