Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945438.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41458266 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12900 | 0.0 | 16.087822 | 5 |
TATACTG | 21290 | 0.0 | 15.605592 | 5 |
TCTATAC | 26675 | 0.0 | 14.841816 | 3 |
CATACAC | 124795 | 0.0 | 14.546734 | 3 |
CTATACT | 22770 | 0.0 | 14.545021 | 4 |
TATGAGC | 17290 | 0.0 | 14.399931 | 94 |
ACATGAC | 98710 | 0.0 | 13.708997 | 8 |
ACACATG | 124270 | 0.0 | 13.678045 | 6 |
TAGGCTG | 11105 | 0.0 | 13.4161 | 5 |
GTGTATG | 113790 | 0.0 | 13.31794 | 1 |
TCATACA | 135915 | 0.0 | 13.29656 | 2 |
TATACAG | 20555 | 0.0 | 13.199511 | 5 |
CATGACA | 101805 | 0.0 | 13.072717 | 9 |
ATCATAC | 133395 | 0.0 | 13.061319 | 1 |
CACATGA | 120570 | 0.0 | 13.031869 | 7 |
GTATAGA | 28275 | 0.0 | 12.807494 | 1 |
TAATACT | 32460 | 0.0 | 12.724461 | 4 |
CTAGTAC | 12580 | 0.0 | 12.709451 | 3 |
GTATATA | 64850 | 0.0 | 12.639345 | 1 |
GTATTAG | 22495 | 0.0 | 12.595939 | 1 |