Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945709.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 80809264 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 10620 | 0.0 | 15.382651 | 53 |
CGCCGTA | 9870 | 0.0 | 14.78119 | 56 |
GCCGTAT | 10620 | 0.0 | 13.770658 | 57 |
TGGTCGC | 13025 | 0.0 | 12.487704 | 52 |
TATGCCG | 9460 | 0.0 | 11.204445 | 53 |
CCGTATC | 14180 | 0.0 | 10.387555 | 58 |
CGTATGC | 11045 | 0.0 | 10.229056 | 51 |
GTATGCC | 12275 | 0.0 | 9.289738 | 52 |
GTCGCCG | 18990 | 0.0 | 9.156182 | 54 |
CGTGTAG | 19955 | 0.0 | 9.120258 | 25 |
CTCGGTG | 20335 | 0.0 | 9.013777 | 47 |
TCGGTGG | 20445 | 0.0 | 8.845012 | 48 |
GAGACCG | 21130 | 0.0 | 8.516424 | 40 |
ATGCCGT | 11100 | 0.0 | 8.446851 | 54 |
CGAGACC | 21940 | 0.0 | 8.441617 | 39 |
TGCCGTC | 10760 | 0.0 | 8.356337 | 55 |
CGTATCA | 17700 | 0.0 | 8.301994 | 59 |
GGTGGTC | 22340 | 0.0 | 7.859722 | 50 |
GCGTCGT | 23745 | 0.0 | 7.756132 | 21 |
GTCGTGT | 23930 | 0.0 | 7.7517977 | 23 |