FastQCFastQC Report
Wed 16 Nov 2016
SRR1945738.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945738.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33649866
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG175250.016.9365255
TATACCG103450.014.5837155
TATGAGC145200.014.43604194
CATACAC1153750.014.4236573
CTATACT176300.014.2161114
ACATGAC861400.013.9324358
ACACATG1134300.013.80993756
CATGACA879300.013.507629
CACATGA1087650.013.4517047
TCTATAC208200.013.4186433
TCATACA1232750.013.3627892
TATACAG163800.013.14619355
ATCATAC1217900.013.1331461
GTGTATG993050.012.7955981
ATACTGT164300.012.3671566
TAGACTG92600.012.3281535
ATACCGT92150.012.23930556
TACACAT1403850.012.213695
GTATAGA222050.012.0330631
GATTGAG972850.011.9383167