FastQCFastQC Report
Wed 16 Nov 2016
SRR1945722.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945722.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19095420
Sequences flagged as poor quality0
Sequence length76
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT36450.022.004781
TATGCCG26900.019.52891763
GCCGTAT29050.019.16537367
CGCCGTA30150.018.69836866
CGTATGC31700.017.23441561
GGTCGCC34750.016.62908663
GCTGAAC57300.016.36268211
ATGCCGT30850.016.00393564
CCGTATC36850.015.29878468
TGCCGTC32800.015.05117865
GTATGCC35600.014.95429262
GCCGTCT34300.014.70054666
GGCATTC66250.014.6396832
CCTGCTG63100.014.6345918
ATTCCTG64300.014.4308545
TGGTCGC42600.013.97692462
CGAGATC88000.013.91428318
TGAACCG70050.013.38629113
TTCCTGC70950.013.2764196
CCGAGAT100500.012.74105317