FastQCFastQC Report
Wed 16 Nov 2016
SRR1945554.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945554.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26426726
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG136350.013.6903835
CTATACT146300.012.2450594
TATACCG95450.012.0689765
GTATAGA179350.011.8055851
TATACAG152000.011.6930685
TAGACTG66250.011.4976585
TCTATAC170850.011.3671473
GTATTAG190700.011.1276171
CATACAC530550.010.7776393
TAGACCG65950.010.6231115
GCTATAC91600.010.4725173
ACTGTGC42850.010.3117298
GTATATA389150.010.28937151
ATACTGT158850.010.2090756
ATACCGT98150.010.2010246
ACATGAC407450.010.1753368
TACACTG85050.010.1171235
ACACATG513650.010.1031376
TAGTACT154050.09.9502994
CTATACC130900.09.8421764