FastQCFastQC Report
Wed 16 Nov 2016
SRR1945626.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945626.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45290744
Sequences flagged as poor quality0
Sequence length110
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCCTCG162550.028.8438784
CGGCATT123200.026.955731
GGAACCC199950.023.6753941
CCCTCGA218150.022.2552665
AACCCTC248650.019.290893
CCTGCTG180050.018.2202078
GGCATTC198650.017.6103882
GCATTCC208650.016.3467223
CCTCGAC309950.016.0254866
GAACCCT308650.015.9079542
ATTCCTG212500.015.7164035
TTCCTGC232200.014.5060916
GGGCGAT184200.014.230000526-27
CTGCTGA265950.012.8989069
TCCTGCT281150.012.0356327
CTCGACC502900.011.2863687
CGGGTTC220750.010.71898542-43
TATCGGG263700.010.448791540-41
GCTTGGT454650.010.3562769
CCGAGAT322050.010.20636116-17