Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945591.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40960618 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 433716 | 1.0588609771463897 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 267026 | 0.6519091093791602 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG | 64404 | 0.15723395579627242 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGG | 47473 | 0.11589913023284952 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 42513 | 0.10378993793501846 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 201095 | 0.0 | 59.64395 | 9 |
GCGGTTC | 196650 | 0.0 | 59.28756 | 11 |
AGCGGTT | 198260 | 0.0 | 59.188946 | 10 |
AGAGCGG | 210620 | 0.0 | 57.935562 | 8 |
TATGCCG | 149510 | 0.0 | 57.425545 | 43 |
CGTATGC | 151545 | 0.0 | 57.16065 | 41 |
GTTCAGC | 200895 | 0.0 | 56.829422 | 14 |
ATGCCGT | 126255 | 0.0 | 56.824955 | 44 |
GTATGCC | 152210 | 0.0 | 56.78994 | 42 |
TGCCGTC | 123855 | 0.0 | 56.603962 | 45 |
GGTTCAG | 205070 | 0.0 | 56.33633 | 13 |
GAGACCG | 180660 | 0.0 | 56.27847 | 30 |
CGAGACC | 180785 | 0.0 | 56.269146 | 29 |
CGGTTCA | 206315 | 0.0 | 56.24362 | 12 |
GCCGTCT | 114350 | 0.0 | 56.111202 | 46 |
TCGTATG | 160010 | 0.0 | 56.04909 | 40 |
AATGCCG | 181055 | 0.0 | 55.88964 | 24 |
CAGCAGG | 199365 | 0.0 | 55.608135 | 17 |
AGACCGA | 186155 | 0.0 | 55.335167 | 31 |
CCGATAT | 107320 | 0.0 | 55.150806 | 34 |