Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945545.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30305430 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGTAC | 13900 | 0.0 | 14.072784 | 3 |
GTACTAG | 19760 | 0.0 | 12.85875 | 1 |
GTACTAC | 15620 | 0.0 | 12.72991 | 6 |
TAGACCG | 11470 | 0.0 | 12.666785 | 5 |
TGTAGGG | 18455 | 0.0 | 12.306806 | 2 |
CCGTGAG | 11595 | 0.0 | 12.040063 | 9 |
TATACTG | 14670 | 0.0 | 11.987065 | 5 |
TATACCG | 9760 | 0.0 | 11.947395 | 5 |
GACCGTG | 9405 | 0.0 | 11.845578 | 7 |
AGACCGT | 11200 | 0.0 | 11.835786 | 6 |
CCTAGTA | 15985 | 0.0 | 11.796249 | 2 |
TACTAGG | 21630 | 0.0 | 11.630797 | 2 |
ACCGTGA | 14190 | 0.0 | 11.395634 | 8 |
TAGTACT | 29515 | 0.0 | 11.326564 | 4 |
GTAGGGA | 17820 | 0.0 | 11.293735 | 3 |
GATACCC | 17150 | 0.0 | 11.155595 | 8 |
CTATACT | 14710 | 0.0 | 11.091446 | 4 |
TATACAG | 14350 | 0.0 | 10.97651 | 5 |
TAGCGGG | 9780 | 0.0 | 10.910133 | 9 |
CATACAC | 79980 | 0.0 | 10.894203 | 3 |