Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945725.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37777752 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 7765 | 0.0 | 32.368977 | 1 |
TATGCCG | 6535 | 0.0 | 30.84799 | 63 |
GCCGTAT | 6275 | 0.0 | 29.001482 | 67 |
CGCCGTA | 6280 | 0.0 | 28.978506 | 66 |
CGTATGC | 7270 | 0.0 | 27.776583 | 61 |
ATGCCGT | 7200 | 0.0 | 27.514906 | 64 |
GTATGCC | 7700 | 0.0 | 26.317606 | 62 |
GGTCGCC | 7830 | 0.0 | 24.716215 | 63 |
GCCGTCT | 8200 | 0.0 | 24.545187 | 66 |
CGAGATC | 18450 | 0.0 | 23.556534 | 18 |
CCGTATC | 7970 | 0.0 | 23.052595 | 68 |
TGCCGTC | 8880 | 0.0 | 22.508251 | 65 |
GCTGAAC | 11315 | 0.0 | 21.832167 | 11 |
TGGTCGC | 9230 | 0.0 | 20.4737 | 62 |
CGTGTAG | 10725 | 0.0 | 20.261513 | 35 |
TCGTATG | 10155 | 0.0 | 19.816069 | 60 |
ATTCCTG | 13505 | 0.0 | 19.051044 | 5 |
AACCGAG | 11980 | 0.0 | 18.786795 | 15 |
TTCCTGC | 14295 | 0.0 | 18.01783 | 6 |
CCTGCTG | 14320 | 0.0 | 17.75307 | 8 |