FastQCFastQC Report
Wed 16 Nov 2016
SRR1945519.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945519.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31848056
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG115650.014.3043895
ATACCGT102450.013.4408886
CCGTGAG86400.013.2180769
TACCGTG89300.012.6308557
ACCGTGA109650.012.4297888
TATACTG160050.011.8924575
CTAGTAC110550.011.4789593
CTATACT169550.011.4755844
TCTATAC210550.011.3398163
GTATAGG118250.011.3345911
CATACAC889500.011.0010023
ACACATG881900.010.6528486
GTATTAG192300.010.6382981
ACATGAC726000.010.59061058
GTGTATG833600.010.57805251
TAGACCG77550.010.5448345
GTATAGA223300.010.361881
CATGACA732050.010.3426189
TATACAG142850.010.166015
CTATACC167550.010.1259334