FastQCFastQC Report
Wed 16 Nov 2016
SRR1945743.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945743.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72799152
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG538200.015.3409684
AGAGCGT295000.013.75307759
GATCGGA647750.012.94848252
CGGAAGA657600.012.7609595
GGTCGCC158900.012.13199844-45
ATCGGAA701100.012.0295683
AAGAGCG352700.011.4903858
CGTCCCG164250.010.97190836-37
GAAGAGC796250.010.7065847
CGCCGTA177000.010.63861546-47
CCCGTCC179600.010.58273634-35
AGAGCAC416650.010.5210519
TGGTCGC186550.010.2829942-43
GAGCGTC211900.09.85933610-11
GCACACG222500.09.83984212-13
CCGTCCC197350.09.56000334-35
TGCCGTC152050.09.50339450-51
TATGCCG161250.09.25650648-49
AGCGTCG222750.09.25348210-11
GCCGTCT161500.09.07526552-53