FastQCFastQC Report
Wed 16 Nov 2016
SRR1945668.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945668.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91030016
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG1011680.1111369682720917Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT301550.038.8085371
ATTCCTG461850.025.206265
CCTGCTG466150.024.8627078
GGCATTC487600.024.0623512
TTCCTGC518450.022.6627456
GCATTCC523550.022.6254843
TCCTGCT635100.018.6037657
CTGCTGA633950.018.2743769
CGAGATC606500.017.7170218-19
GGCTGAT346250.017.3972852
ATCAGCC355950.016.3027612
GCTGAAC393500.014.30270310-11
GTTCAGC779450.013.8650943
CGCCGTA294900.013.6706666-67
CAGGAAT814450.013.3245349
ATGCCGT319150.013.13914864-65
CATTCCT948700.013.1250344
TATGCCG332800.013.0369662-63
GCCGTAT296500.013.00227366-67
AACCGAG413600.012.86456514-15