FastQCFastQC Report
Wed 16 Nov 2016
SRR1945746.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945746.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87625042
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG639700.010.9482714
AGAGCGT349500.010.4619339
GGTCGCC181700.010.12934344-45
GATCGGA763900.09.509422
CGCCGTA195650.09.30883546-47
CGGAAGA765700.09.2823535
ATCGGAA814250.09.0832133
AAGAGCG420200.09.0818538
TATGCCG193950.09.05001748-49
TGCCGTC195250.08.99934150-51
GCCGTCT203500.08.55214852-53
TGGTCGC218950.08.33378642-43
ATGCCGT211250.08.28446350-51
AGAGCAC484450.08.0271419
AGTCACG264850.08.01038928-29
CGTATGC229750.07.97807746-47
GAAGAGC958650.07.7741537
GTATGCC238350.07.590008348-49
GCACACG258200.07.56562912-13
GCCGTAT248400.07.56557448-49