Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945538.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30294512 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGCG | 1955 | 0.0 | 12.740848 | 7 |
CCGTGCG | 1885 | 0.0 | 11.967697 | 9 |
CTATACT | 15820 | 0.0 | 11.526383 | 4 |
TATACTG | 15480 | 0.0 | 11.324152 | 5 |
TCTATAC | 18730 | 0.0 | 10.865422 | 3 |
TATACCG | 9970 | 0.0 | 10.653225 | 5 |
CATACAC | 76905 | 0.0 | 10.615531 | 3 |
GTACTAG | 11790 | 0.0 | 10.370965 | 1 |
GTATATA | 44745 | 0.0 | 10.184481 | 1 |
ACACATG | 80290 | 0.0 | 10.079528 | 6 |
GCCGTGC | 3225 | 0.0 | 10.055284 | 8 |
AGCGCGC | 3465 | 0.0 | 10.036989 | 8 |
TAGAGCG | 5315 | 0.0 | 9.991783 | 5 |
GTATAGA | 20040 | 0.0 | 9.832771 | 1 |
ACATGAC | 62090 | 0.0 | 9.7946205 | 8 |
TATACAG | 13975 | 0.0 | 9.685198 | 5 |
GTATAGG | 11485 | 0.0 | 9.62269 | 1 |
CACATGA | 78245 | 0.0 | 9.55014 | 7 |
GCGCGCC | 2470 | 0.0 | 9.513795 | 9 |
GTGTATG | 75605 | 0.0 | 9.479689 | 1 |