Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945744.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 73652416 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 95745 | 0.0 | 36.679314 | 4 |
AGAGCGT | 51520 | 0.0 | 35.836502 | 9 |
CGGAAGA | 107525 | 0.0 | 32.690998 | 5 |
GATCGGA | 108415 | 0.0 | 32.52144 | 2 |
AAGAGCG | 58365 | 0.0 | 32.490932 | 8 |
ATCGGAA | 113495 | 0.0 | 31.14634 | 3 |
AGAGCAC | 62740 | 0.0 | 28.939869 | 9 |
GAAGAGC | 121775 | 0.0 | 28.911928 | 7 |
AGATCGG | 143430 | 0.0 | 26.027502 | 1 |
GGTCGCC | 34460 | 0.0 | 25.771238 | 44-45 |
CGCCGTA | 35330 | 0.0 | 24.71403 | 46-47 |
GGAAGAG | 148170 | 0.0 | 23.96875 | 6 |
TGGTCGC | 37145 | 0.0 | 23.404493 | 42-43 |
TATGCCG | 31355 | 0.0 | 23.303999 | 46-47 |
TGCCGTC | 30620 | 0.0 | 23.255915 | 48-49 |
GCCGTCT | 31385 | 0.0 | 22.417152 | 50-51 |
ATGCCGT | 31935 | 0.0 | 22.181168 | 48-49 |
GAGCGTC | 42865 | 0.0 | 21.755785 | 10-11 |
GCCGTAT | 40555 | 0.0 | 21.691946 | 48-49 |
CGTATGC | 35180 | 0.0 | 21.431038 | 44-45 |