Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945653.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 65487354 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 350476 | 0.5351811893331344 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG | 80332 | 0.1226679581526534 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 68558 | 0.10468891444293199 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 215375 | 0.0 | 62.812027 | 9 |
GCGGTTC | 213620 | 0.0 | 62.100628 | 11 |
AGCGGTT | 215740 | 0.0 | 61.897312 | 10 |
AGAGCGG | 222330 | 0.0 | 61.181892 | 8 |
GTTCAGC | 215955 | 0.0 | 59.962646 | 14 |
CGGTTCA | 220080 | 0.0 | 59.897305 | 12 |
CAGCAGG | 214995 | 0.0 | 59.476517 | 17 |
AATGCCG | 204785 | 0.0 | 59.16733 | 24 |
GGTTCAG | 222485 | 0.0 | 58.97243 | 13 |
TGCCGAG | 204825 | 0.0 | 58.246376 | 26 |
GAATGCC | 210935 | 0.0 | 58.013176 | 23 |
ATGCCGA | 208010 | 0.0 | 57.717983 | 25 |
GGAATGC | 215520 | 0.0 | 57.697483 | 22 |
AAGAGCG | 238600 | 0.0 | 57.635178 | 7 |
CAGGAAT | 216805 | 0.0 | 57.53852 | 20 |
GCAGGAA | 219295 | 0.0 | 57.274746 | 19 |
GAGACCG | 200795 | 0.0 | 57.2579 | 30 |
GACCGAT | 179920 | 0.0 | 56.90983 | 32 |
CGAGACC | 203765 | 0.0 | 56.882328 | 29 |
TCAGCAG | 228050 | 0.0 | 56.51737 | 16 |