FastQCFastQC Report
Wed 16 Nov 2016
SRR1945675.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945675.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49196128
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC617210.12545906051793346TruSeq Adapter, Index 4 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG408900.025.3753913
TATGCCG131350.023.2043446-47
GAGCACA273350.022.6918899
ATCGGAA477300.022.2603972
GATCGGA483700.022.2119671
CGGAAGA480400.021.9886474
CGTATGC141800.021.64401244-45
ATGCCGT144050.021.51745246-47
GAGCGTC166700.021.2263419
GCCGTCT148250.021.07248-49
GTATGCC150600.020.53533244-45
TGCCGTC152150.020.23833748-49
AGAGCAC321250.019.3229628
CGCCGTA97250.017.56726546-47
GCACACG180200.017.38056210-11
AGAGCGT213600.017.093618
GAAGAGC613050.017.0539056
AAGAGCG259500.016.224677
GGTCGCC107350.016.07117542-43
GCCGTAT110200.015.88671146-47