FastQCFastQC Report
Wed 16 Nov 2016
SRR1945761.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945761.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40078200
Sequences flagged as poor quality0
Sequence length72
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT82750.07.1628081
CCGAGAT164550.06.06015717
GGCATTC117800.05.6667582
CGAGATC184250.05.501715718
AATGCCG100400.05.440573713
GCTGAAC94800.05.102469411