FastQCFastQC Report
Wed 16 Nov 2016
SRR1945555.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945555.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26001946
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC13400.015.7854418
TATACTG131200.013.2956185
CTATACT136750.013.1342264
CTGCGCG15700.012.5741249
TCTATAC162550.012.3810123
GTATAGA174800.012.3011531
TATACCG91800.012.2924095
CATACAC724250.012.2513173
TCGCGCG18700.012.0650129
CCGTGAG68300.011.6992049
ACACATG718150.011.6770876
ACATGAC565750.011.6153328
CTAGTAC86400.011.5921833
CACATGA699650.011.4013397
GTATATA404100.011.3290891
TCATACA795350.011.1150292
GTACTAG108850.011.1090191
CATGACA577050.011.0778029
ACCGTGA89700.010.9522378
TAGTACT159400.010.8549524