FastQCFastQC Report
Wed 16 Nov 2016
SRR1945643.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945643.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82878776
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATGCCG251250.05.754100313
GCGGTTC261000.05.405976331
ATCGGAA410250.05.27415512
AGCGGTT265050.05.191429630
CGTGTAG204500.05.11763825
GCCGTAT196350.05.115543457
GATCGGA430750.05.094146711