FastQCFastQC Report
Wed 16 Nov 2016
SRR1945657.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945657.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62668950
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT3639350.5807261809875545Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT1789890.2856103381339563Illumina Paired End PCR Primer 2 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT1156450.051.5713469
GCGGTTC1152700.050.71056711
TATGCCG889750.050.4391143
AGCGGTT1173350.050.21157510
AGAGCGG1230450.049.891288
CGTATGC910900.049.88308741
ATGCCGT861600.049.29214544
TGCCGTC850150.049.09480345
GTATGCC925050.048.92697542
GCCGTCT825600.048.88524646
GAGACCG1078950.048.16246830
CGAGACC1090550.047.92085329
GACCGAT1065450.046.82436432
TCGTATG993700.046.82381440
AGACCGA1114850.046.35276831
AATGCCG1168200.046.0924424
CCGATAT694300.046.0508734
GTTCAGC1258700.045.3836714
CGGTTCA1290600.045.00503512
CAGCAGG1261100.044.70211417