FastQCFastQC Report
Wed 16 Nov 2016
SRR1945624.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945624.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40612312
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG681320.16776193386872434Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT131050.040.9361761
TATGCCG116900.040.3662963
ATGCCGT125200.037.1520364
TGCCGTC124000.036.84202665
CGCCGTA97900.036.33731566
GCCGTCT124400.036.1943866
CGTATGC133650.036.17295561
GTATGCC131150.036.1353662
GGTCGCC102700.036.0111463
GCCGTAT101200.035.60647667
CCGAGAT325900.032.2237517
GGCATTC179300.029.577022
CCGTATC113000.029.45180968
CCTGCTG164950.029.3051688
GCTGAAC164900.028.62200711
CGAGATC365700.028.57520718
AACCGAG171950.028.2954615
TGGTCGC119300.028.22230162
TCGTATG180200.028.10567360
GCATTCC196300.027.778283