FastQCFastQC Report
Wed 16 Nov 2016
SRR1945672.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945672.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69137662
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA104450.022.34212956
GGTCGCC122800.020.48569953
GCCGTAT118450.019.82007857
TATGCCG99500.018.58517553
TGGTCGC145000.017.40312452
CCGTATC135750.017.24240558
CGTATGC116400.016.16751351
GTATGCC122150.015.32182552
ATGCCGT111300.014.66714654
TGCCGTC112200.014.0834555
CGTGTAG189700.013.57957625
GCCGTCT111500.013.0457256
CGTATCA179400.013.02756859
CTCGGTG211650.012.53538847
TCGGTGG215300.012.51718848
GGTGGTC208550.012.28345650
GAGACCG210250.011.80539340
GTCGCCG220500.011.57970254
GTCGTGT225350.011.52437323
AATGCCG220400.011.26017234