FastQCFastQC Report
Wed 16 Nov 2016
SRR1945527.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945527.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80234512
Sequences flagged as poor quality0
Sequence length40-101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC201900.08.6735394-95
TGCCGTC161050.07.105817394-95
CGTATGC266750.06.953999594-95
TATGCCG199850.06.91145694-95
TGGTCGC252150.06.807804694-95
GTATGCC247100.06.796149794-95
GCCGTCT166250.06.307262494-95
ATGCCGT186950.06.263737794-95
GTCGCCG276300.06.174239694-95
GATCTCG924300.06.032223794-95
CGCCGTA164600.05.88542694-95
CTCGGTG442350.05.872054694-95
TCGGTGG420250.05.617230494-95
CGATCAG632850.05.517462794-95
GTCACGA729400.05.279698494-95
AGTCACG737500.05.257797294-95
TCGTATG366900.05.19363894-95
CTCGTAT408600.05.132561794-95
CACGATC748450.05.02086194-95