Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945724.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44601114 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 267717 | 0.6002473391135477 | No Hit |
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC | 184661 | 0.41402777518068273 | No Hit |
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 56979 | 0.12775241443520893 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 11990 | 0.0 | 35.153812 | 1 |
TATGCCG | 9210 | 0.0 | 32.164154 | 63 |
GGTCGCC | 7980 | 0.0 | 30.067768 | 63 |
CGTATGC | 10330 | 0.0 | 29.482838 | 61 |
GTATGCC | 10585 | 0.0 | 28.384245 | 62 |
CGCCGTA | 7985 | 0.0 | 28.28907 | 66 |
ATGCCGT | 9955 | 0.0 | 27.814476 | 64 |
GCCGTAT | 8310 | 0.0 | 27.693739 | 67 |
TGCCGTC | 9380 | 0.0 | 27.67992 | 65 |
CCGAGAT | 30295 | 0.0 | 26.739975 | 17 |
GCCGTCT | 9870 | 0.0 | 25.66693 | 66 |
CGAGATC | 31705 | 0.0 | 25.340366 | 18 |
GGCATTC | 17385 | 0.0 | 23.21961 | 2 |
CCTGCTG | 15670 | 0.0 | 22.87794 | 8 |
GCTGAAC | 15325 | 0.0 | 22.45915 | 11 |
TGGTCGC | 9870 | 0.0 | 22.349134 | 62 |
CCGTATC | 9725 | 0.0 | 22.292688 | 68 |
TCGTATG | 15935 | 0.0 | 21.852713 | 60 |
AACCGAG | 16495 | 0.0 | 21.753708 | 15 |
GCATTCC | 18865 | 0.0 | 21.671711 | 3 |