Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945444.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 42287500 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 13485 | 0.0 | 17.25012 | 5 |
TATACTG | 21720 | 0.0 | 15.834805 | 5 |
TACCGTG | 9470 | 0.0 | 14.919071 | 7 |
TCTATAC | 28150 | 0.0 | 14.646383 | 3 |
CATACAC | 128970 | 0.0 | 14.247482 | 3 |
ACATGAC | 94715 | 0.0 | 14.152199 | 8 |
ATACCGT | 12640 | 0.0 | 13.924797 | 6 |
CCGTGAG | 10550 | 0.0 | 13.8817625 | 9 |
CTAGTAC | 12890 | 0.0 | 13.760863 | 3 |
CTATACT | 22990 | 0.0 | 13.714022 | 4 |
GTATAGG | 14790 | 0.0 | 13.628571 | 1 |
TATACAG | 20110 | 0.0 | 13.577946 | 5 |
ACACATG | 125380 | 0.0 | 13.560026 | 6 |
CATGACA | 96775 | 0.0 | 13.546157 | 9 |
CACATGA | 121870 | 0.0 | 13.220676 | 7 |
ACCGTGA | 13240 | 0.0 | 13.1862335 | 8 |
GTGTATG | 115370 | 0.0 | 13.068543 | 1 |
GTATAGA | 29595 | 0.0 | 13.060772 | 1 |
TCATACA | 140580 | 0.0 | 12.983868 | 2 |
TACACAT | 147490 | 0.0 | 12.543236 | 5 |