Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945661.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 60599834 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 407590 | 0.6725926014912846 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 83044 | 0.13703667901136496 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG | 81860 | 0.1350828782798316 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 244595 | 0.0 | 61.029846 | 9 |
GCGGTTC | 252065 | 0.0 | 60.69352 | 11 |
AGCGGTT | 250510 | 0.0 | 60.686085 | 10 |
AGAGCGG | 249585 | 0.0 | 59.233387 | 8 |
GTTCAGC | 260330 | 0.0 | 58.16319 | 14 |
CGGTTCA | 262140 | 0.0 | 57.919933 | 12 |
CAGCAGG | 259005 | 0.0 | 57.600117 | 17 |
AATGCCG | 246050 | 0.0 | 57.254498 | 24 |
GGTTCAG | 266445 | 0.0 | 57.203163 | 13 |
TATGCCG | 99920 | 0.0 | 57.167465 | 43 |
GAGACCG | 240085 | 0.0 | 57.071285 | 30 |
CGAGACC | 241750 | 0.0 | 56.770138 | 29 |
CGTATGC | 105685 | 0.0 | 56.217392 | 41 |
CAGGAAT | 258610 | 0.0 | 56.14113 | 20 |
GAATGCC | 253870 | 0.0 | 55.974518 | 23 |
GTATGCC | 104690 | 0.0 | 55.974064 | 42 |
TGCCGAG | 250210 | 0.0 | 55.957146 | 26 |
AGACCGA | 241910 | 0.0 | 55.927563 | 31 |
GACCGAT | 225135 | 0.0 | 55.914955 | 32 |
CCGATAT | 157610 | 0.0 | 55.912346 | 34 |