Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945600.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 75652046 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 39110 | 0.0 | 15.5771 | 5 |
CATACAC | 241875 | 0.0 | 14.587549 | 3 |
TATACAG | 38055 | 0.0 | 13.903433 | 5 |
ACATGAC | 186920 | 0.0 | 13.788547 | 8 |
ACACATG | 249730 | 0.0 | 13.735264 | 6 |
CTATACT | 41000 | 0.0 | 13.650902 | 4 |
TCTATAC | 47025 | 0.0 | 13.487549 | 3 |
TATACCG | 23740 | 0.0 | 13.387328 | 5 |
CATGACA | 192405 | 0.0 | 13.307122 | 9 |
CACATGA | 240885 | 0.0 | 13.260575 | 7 |
TCATACA | 263520 | 0.0 | 13.195674 | 2 |
ATCATAC | 256420 | 0.0 | 13.157627 | 1 |
GTGTATG | 211320 | 0.0 | 13.025596 | 1 |
GTATATA | 119175 | 0.0 | 12.612003 | 1 |
GTATAGA | 49920 | 0.0 | 12.326083 | 1 |
TAATACT | 64055 | 0.0 | 12.110621 | 4 |
TACACAT | 311375 | 0.0 | 12.084312 | 5 |
TACCGTG | 15535 | 0.0 | 11.954527 | 7 |
GATTGAG | 207490 | 0.0 | 11.857773 | 7 |
TAGACCG | 16575 | 0.0 | 11.855701 | 5 |