FastQCFastQC Report
Wed 16 Nov 2016
SRR1945751.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945751.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36893160
Sequences flagged as poor quality0
Sequence length72
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT70100.07.9360891
GCTGAAC80150.06.443413311
CGAGATC166300.06.310425318
AATGCCG104650.05.46932913
CCGAGAT222400.05.339806617
ATTCCTG114900.05.18030265
AACCGAG97850.05.143837515
GGCATTC136250.05.13991642