Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945573.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 36307552 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 18835 | 0.0 | 16.654312 | 5 |
GTCGCGC | 1435 | 0.0 | 15.926172 | 8 |
TATACCG | 11405 | 0.0 | 14.970076 | 5 |
CTATACT | 20245 | 0.0 | 14.830327 | 4 |
CATACAC | 90710 | 0.0 | 14.044796 | 3 |
TATACAG | 18140 | 0.0 | 13.858618 | 5 |
TCTATAC | 23775 | 0.0 | 13.721596 | 3 |
ACACATG | 93790 | 0.0 | 13.26825 | 6 |
ACATGAC | 74660 | 0.0 | 13.192674 | 8 |
CACATGA | 91870 | 0.0 | 12.76998 | 7 |
GTATAGG | 13100 | 0.0 | 12.67254 | 1 |
GTATATA | 57090 | 0.0 | 12.650408 | 1 |
CATGACA | 76660 | 0.0 | 12.567902 | 9 |
GTGTATG | 84320 | 0.0 | 12.428459 | 1 |
TCATACA | 100010 | 0.0 | 12.414887 | 2 |
GAGCGCG | 1935 | 0.0 | 12.274088 | 7 |
ATACTGT | 18590 | 0.0 | 12.245561 | 6 |
ATCATAC | 101860 | 0.0 | 12.010356 | 1 |
CTAGTAC | 12090 | 0.0 | 11.97209 | 3 |
GTATAGA | 25490 | 0.0 | 11.902026 | 1 |