FastQCFastQC Report
Wed 16 Nov 2016
SRR1945706.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945706.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115948538
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG3001460.25886139245671214Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT411150.043.0173451
GCTGAAC502050.030.37248611
CCGAGAT1215900.030.23169917
ATTCCTG543800.030.2062765
CCTGCTG536800.029.6460278
GCATTCC572500.029.5853143
AACCGAG479900.029.33893415
CGAGATC1257850.029.20830518
CGCCGTA479550.028.7642256
GGCATTC590050.028.2603422
TTCCTGC585300.028.2121126
GCCGTAT492300.028.0390657
TATGCCG544850.027.91117963
GGCTGAT440050.027.5632152
ATCAGCC451850.026.7891922
GGTCGCC549250.026.66187153
TGAACCG570350.026.43201313
CCGTATC523900.026.22685658
CTGAACC604350.025.91648512
GAACCGA525600.025.8749514