Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945648.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 87239122 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 92900 | 0.10648892133508633 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 21260 | 0.0 | 35.01709 | 1 |
CGAGATC | 50925 | 0.0 | 26.68656 | 18 |
CCGAGAT | 52460 | 0.0 | 26.034252 | 17 |
TATGCCG | 17315 | 0.0 | 24.47279 | 63 |
CCTGCTG | 29135 | 0.0 | 24.001022 | 8 |
GGCATTC | 30945 | 0.0 | 23.314743 | 2 |
CGTATGC | 19785 | 0.0 | 22.655174 | 61 |
GCATTCC | 32510 | 0.0 | 22.352282 | 3 |
GCTGAAC | 30395 | 0.0 | 22.341438 | 11 |
GAGACCG | 34250 | 0.0 | 21.923986 | 50 |
CGAGACC | 35080 | 0.0 | 21.451307 | 49 |
GAGATCG | 63425 | 0.0 | 21.376677 | 19 |
GTATGCC | 20735 | 0.0 | 21.060465 | 62 |
ATGCCGT | 17665 | 0.0 | 20.521446 | 64 |
ATTCCTG | 35690 | 0.0 | 20.42724 | 5 |
AACCGAG | 30920 | 0.0 | 19.823048 | 15 |
TGCCGTC | 16990 | 0.0 | 19.689077 | 65 |
GGTCGCC | 17450 | 0.0 | 19.551092 | 63 |
AGCGTCG | 27705 | 0.0 | 19.377207 | 30 |
TTCCTGC | 38115 | 0.0 | 19.358147 | 6 |