Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945747.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 69136246 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 36 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 133700 | 0.0 | 41.577515 | 4 |
AGAGCGT | 68660 | 0.0 | 40.31313 | 9 |
CGGAAGA | 142900 | 0.0 | 38.89287 | 5 |
GATCGGA | 144265 | 0.0 | 38.652878 | 2 |
ATCGGAA | 147700 | 0.0 | 37.797527 | 3 |
AAGAGCG | 74170 | 0.0 | 37.53315 | 8 |
GAAGAGC | 157260 | 0.0 | 35.445988 | 7 |
AGAGCAC | 79790 | 0.0 | 34.736385 | 9 |
GGAAGAG | 179905 | 0.0 | 31.157919 | 6 |
AGATCGG | 191010 | 0.0 | 29.506733 | 1 |
GGTCGCC | 48795 | 0.0 | 26.69226 | 44-45 |
CGCCGTA | 48985 | 0.0 | 25.92662 | 46-47 |
AAGAGCA | 111860 | 0.0 | 25.144274 | 8 |
TGGTCGC | 51860 | 0.0 | 24.754902 | 42-43 |
GCCGTAT | 53100 | 0.0 | 24.24043 | 48-49 |
TATGCCG | 38490 | 0.0 | 23.858168 | 46-47 |
TGCCGTC | 37805 | 0.0 | 23.304497 | 48-49 |
CCGTATC | 54555 | 0.0 | 23.236967 | 48-49 |
GCCGTCT | 38115 | 0.0 | 23.009432 | 50-51 |
GAGCGTC | 60835 | 0.0 | 22.90179 | 10-11 |