FastQCFastQC Report
Wed 16 Nov 2016
SRR1945637.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945637.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87023998
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT203550.031.6584681
CGAGATC474400.023.53382518
CCGAGAT505850.022.14767617
TATGCCG171650.021.9591663
GGCATTC301150.020.4054892
CCTGCTG294850.019.9946778
CGTATGC193550.019.95061161
GCATTCC327400.019.3556563
GCTGAAC294500.019.09340711
GTATGCC202450.018.6939962
GAGACCG336850.018.3866250
ATTCCTG334850.018.2445875
CGAGACC346350.017.83944549
ATGCCGT184550.017.835564
GAGATCG634750.017.63737319
AACCGAG291200.017.21908815
TTCCTGC354300.017.1853946
TGCCGTC188750.016.97334365
AGAGCGG438750.016.7645428
GACCGAT337900.016.45623852