Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945737.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 45786834 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 22845 | 0.0 | 15.343381 | 5 |
TATACCG | 14875 | 0.0 | 14.746521 | 5 |
CATACAC | 132445 | 0.0 | 14.524244 | 3 |
CTATACT | 24790 | 0.0 | 13.697026 | 4 |
ACATGAC | 108670 | 0.0 | 13.659365 | 8 |
ACACATG | 131605 | 0.0 | 13.629671 | 6 |
TCTATAC | 29080 | 0.0 | 13.359885 | 3 |
TATACAG | 22705 | 0.0 | 13.308611 | 5 |
CACATGA | 127185 | 0.0 | 13.142705 | 7 |
ATCATAC | 141085 | 0.0 | 13.135685 | 1 |
TCATACA | 143705 | 0.0 | 13.131337 | 2 |
CATGACA | 112795 | 0.0 | 12.938568 | 9 |
GTGTATG | 114320 | 0.0 | 12.732375 | 1 |
GTATATA | 71675 | 0.0 | 12.097475 | 1 |
ATACCGT | 12675 | 0.0 | 12.075585 | 6 |
GTATAGA | 30105 | 0.0 | 12.00341 | 1 |
TACACAT | 168185 | 0.0 | 11.951147 | 5 |
TATGAGC | 19085 | 0.0 | 11.87086 | 94 |
TAATACT | 36890 | 0.0 | 11.700267 | 4 |
GTATTAG | 24900 | 0.0 | 11.576811 | 1 |