FastQCFastQC Report
Wed 16 Nov 2016
SRR1945574.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945574.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25799186
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG93350.019.3095515
GTCGCGC10350.017.6327538
ATACCGT81500.017.2281536
TACCGTG72400.017.1955977
CCGTGAG70750.017.0636339
TCTATAC175200.017.0499253
TATACTG132800.015.7944945
CTAGTAC96350.015.3557583
ACCGTGA94050.015.0757788
GTATAGA192600.014.9803831
TATACAG132250.014.8689185
CTATACT137700.014.6884664
ACATGAC749750.014.6672028
CTATACC139800.014.5013144
CATACAC988950.014.3829953
ACACATG969450.014.1213266
CATGACA767900.014.0944849
CACATGA933450.014.0692457
TAGGCTG70100.013.8254135
GATTGAG811900.013.5699457