FastQCFastQC Report
Wed 16 Nov 2016
SRR1945443.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945443.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37615866
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG116150.015.4899465
TATACTG183700.014.8723645
TATGAGC154250.014.64222494
ACATGAC1002650.013.9641918
TATACAG177750.013.79033855
TCTATAC222600.013.680243
CATACAC1271150.013.6027583
CTATACT194100.013.4091324
ACACATG1292950.013.3739896
GTATTAT350350.013.3556421
CATGACA1046500.013.216749
CACATGA1252650.013.0367377
GTATATA534800.012.7779461
GTGTATG1127050.012.5308271
TCATACA1388450.012.414252
TACACAT1510650.012.3635285
TAGGCTG104800.012.3533545
ATCATAC1326900.012.3315911
TAATACT303950.012.1791324
ATACCGT102150.012.1146886