FastQCFastQC Report
Wed 16 Nov 2016
SRR1945727.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945727.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23874828
Sequences flagged as poor quality0
Sequence length76
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT47850.021.189741
TATGCCG36650.019.50129763
GGTCGCC37250.019.09312463
CGCCGTA38400.018.34170266
CGTATGC41150.017.71135761
GCCGTAT41600.017.09944767
ATGCCGT42300.016.2389264
GCTGAAC72900.015.97882611
GTATGCC45850.015.8194162
TGCCGTC42350.015.63754765
TGGTCGC45150.015.52142262
GCCGTCT44550.015.18044166
CCTGCTG79150.014.9307538
GGCATTC80100.014.8371132
ATTCCTG83450.014.3711015
CGAGATC109400.014.07319918
CCGTATC50750.013.947679568
CCGAGAT117550.013.39396317
GCATTCC91050.013.12997153
TTCCTGC96750.012.4314436