Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945537.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27373802 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 14515 | 0.0 | 12.756974 | 5 |
GTATTAG | 20765 | 0.0 | 11.79912 | 1 |
TAGACTG | 6230 | 0.0 | 11.541756 | 5 |
CTATACT | 15315 | 0.0 | 11.538234 | 4 |
TCTATAC | 18615 | 0.0 | 11.412281 | 3 |
TATACCG | 9540 | 0.0 | 11.182681 | 5 |
TACACTG | 7650 | 0.0 | 11.11951 | 5 |
TATACAG | 16160 | 0.0 | 10.527754 | 5 |
GTATAGG | 10350 | 0.0 | 10.495798 | 1 |
GTATAGA | 19340 | 0.0 | 10.431449 | 1 |
TAATACT | 26745 | 0.0 | 10.385165 | 4 |
CTAGACT | 6590 | 0.0 | 10.269411 | 4 |
GTATATA | 37780 | 0.0 | 9.970442 | 1 |
ACTGTGC | 4310 | 0.0 | 9.922853 | 8 |
CCTAGAC | 4975 | 0.0 | 9.9195795 | 3 |
ACAGTGC | 5485 | 0.0 | 9.767888 | 8 |
GTGTAAG | 10030 | 0.0 | 9.611624 | 1 |
CCGTGCG | 2055 | 0.0 | 9.605348 | 9 |
CATACAC | 48865 | 0.0 | 9.570227 | 3 |
CTAGTAC | 8380 | 0.0 | 9.534589 | 3 |