Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945554.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26426726 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 13635 | 0.0 | 13.690383 | 5 |
CTATACT | 14630 | 0.0 | 12.245059 | 4 |
TATACCG | 9545 | 0.0 | 12.068976 | 5 |
GTATAGA | 17935 | 0.0 | 11.805585 | 1 |
TATACAG | 15200 | 0.0 | 11.693068 | 5 |
TAGACTG | 6625 | 0.0 | 11.497658 | 5 |
TCTATAC | 17085 | 0.0 | 11.367147 | 3 |
GTATTAG | 19070 | 0.0 | 11.127617 | 1 |
CATACAC | 53055 | 0.0 | 10.777639 | 3 |
TAGACCG | 6595 | 0.0 | 10.623111 | 5 |
GCTATAC | 9160 | 0.0 | 10.472517 | 3 |
ACTGTGC | 4285 | 0.0 | 10.311729 | 8 |
GTATATA | 38915 | 0.0 | 10.2893715 | 1 |
ATACTGT | 15885 | 0.0 | 10.209075 | 6 |
ATACCGT | 9815 | 0.0 | 10.201024 | 6 |
ACATGAC | 40745 | 0.0 | 10.175336 | 8 |
TACACTG | 8505 | 0.0 | 10.117123 | 5 |
ACACATG | 51365 | 0.0 | 10.103137 | 6 |
TAGTACT | 15405 | 0.0 | 9.950299 | 4 |
CTATACC | 13090 | 0.0 | 9.842176 | 4 |