Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945440.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43104458 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 13995 | 0.0 | 16.565174 | 5 |
TATACTG | 22300 | 0.0 | 15.476512 | 5 |
TCTATAC | 28005 | 0.0 | 14.953748 | 3 |
CCGTGAG | 10370 | 0.0 | 14.63742 | 9 |
TACCGTG | 9865 | 0.0 | 14.524791 | 7 |
CTATACT | 23160 | 0.0 | 14.445072 | 4 |
ATACCGT | 12260 | 0.0 | 14.366507 | 6 |
CATACAC | 133485 | 0.0 | 14.313836 | 3 |
ACATGAC | 113605 | 0.0 | 14.088432 | 8 |
GTGTATG | 116835 | 0.0 | 13.792007 | 1 |
CTAGTAC | 14490 | 0.0 | 13.629586 | 3 |
ACACATG | 131970 | 0.0 | 13.595365 | 6 |
CATGACA | 116455 | 0.0 | 13.567094 | 9 |
TATGAGC | 18075 | 0.0 | 13.4792385 | 94 |
ACCGTGA | 13680 | 0.0 | 13.478292 | 8 |
CACATGA | 126330 | 0.0 | 13.222615 | 7 |
TATACAG | 21295 | 0.0 | 13.054948 | 5 |
TCATACA | 145970 | 0.0 | 12.807179 | 2 |
TAGACCG | 9445 | 0.0 | 12.701017 | 5 |
GATTGAG | 111020 | 0.0 | 12.584829 | 7 |