Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945637.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 87023998 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 20355 | 0.0 | 31.658468 | 1 |
CGAGATC | 47440 | 0.0 | 23.533825 | 18 |
CCGAGAT | 50585 | 0.0 | 22.147676 | 17 |
TATGCCG | 17165 | 0.0 | 21.95916 | 63 |
GGCATTC | 30115 | 0.0 | 20.405489 | 2 |
CCTGCTG | 29485 | 0.0 | 19.994677 | 8 |
CGTATGC | 19355 | 0.0 | 19.950611 | 61 |
GCATTCC | 32740 | 0.0 | 19.355656 | 3 |
GCTGAAC | 29450 | 0.0 | 19.093407 | 11 |
GTATGCC | 20245 | 0.0 | 18.69399 | 62 |
GAGACCG | 33685 | 0.0 | 18.38662 | 50 |
ATTCCTG | 33485 | 0.0 | 18.244587 | 5 |
CGAGACC | 34635 | 0.0 | 17.839445 | 49 |
ATGCCGT | 18455 | 0.0 | 17.8355 | 64 |
GAGATCG | 63475 | 0.0 | 17.637373 | 19 |
AACCGAG | 29120 | 0.0 | 17.219088 | 15 |
TTCCTGC | 35430 | 0.0 | 17.185394 | 6 |
TGCCGTC | 18875 | 0.0 | 16.973343 | 65 |
AGAGCGG | 43875 | 0.0 | 16.76454 | 28 |
GACCGAT | 33790 | 0.0 | 16.456238 | 52 |