Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945592.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 50985682 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 74280 | 0.1456879600041439 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 20645 | 0.0 | 42.191658 | 1 |
CCTGCTG | 26360 | 0.0 | 33.026604 | 8 |
GGCATTC | 27370 | 0.0 | 32.059723 | 2 |
GCATTCC | 27700 | 0.0 | 31.810211 | 3 |
ATTCCTG | 28600 | 0.0 | 30.538437 | 5 |
TTCCTGC | 33800 | 0.0 | 26.020916 | 6 |
CTGCTGA | 36710 | 0.0 | 23.612688 | 9 |
TCCTGCT | 39535 | 0.0 | 22.18687 | 7 |
CGAGATC | 39745 | 0.0 | 20.741072 | 18-19 |
GGCTGAT | 20735 | 0.0 | 20.19593 | 2 |
ATCAGCC | 21090 | 0.0 | 20.190256 | 2 |
CATTCCT | 47510 | 0.0 | 18.882782 | 4 |
CCGAGAT | 45690 | 0.0 | 17.682579 | 16-17 |
CAGCCAA | 33295 | 0.0 | 16.768047 | 4 |
GCTGAAC | 25475 | 0.0 | 16.699705 | 10-11 |
CGCCGTA | 21620 | 0.0 | 15.928588 | 66-67 |
GTTCAGC | 52660 | 0.0 | 15.706408 | 3 |
AACCGAG | 25400 | 0.0 | 15.603144 | 14-15 |
GCCGTAT | 21780 | 0.0 | 15.379857 | 66-67 |
CAGCAGG | 53685 | 0.0 | 15.34131 | 6 |