Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945680.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 51274448 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 8390 | 0.0 | 14.873476 | 48-49 |
GCACACG | 9370 | 0.0 | 14.674257 | 10-11 |
TATGCCG | 9110 | 0.0 | 14.575175 | 46-47 |
TCGGAAG | 21605 | 0.0 | 13.923021 | 3 |
GAGCACA | 19890 | 0.0 | 13.753625 | 9 |
ATGCCGT | 9565 | 0.0 | 13.709859 | 46-47 |
CGTATGC | 9765 | 0.0 | 13.621567 | 44-45 |
GCCGTCT | 9235 | 0.0 | 13.538004 | 48-49 |
AGAGCAC | 21070 | 0.0 | 13.228192 | 8 |
ACGTCTG | 10810 | 0.0 | 12.873966 | 14-15 |
GTATGCC | 10925 | 0.0 | 12.540936 | 44-45 |
GATCGGA | 26205 | 0.0 | 11.339704 | 1 |
GTCACCG | 12635 | 0.0 | 11.194727 | 28-29 |
CGGAAGA | 29620 | 0.0 | 10.567298 | 4 |
ATCGGAA | 29815 | 0.0 | 10.404519 | 2 |
ACACGTC | 14140 | 0.0 | 10.090479 | 12-13 |
CACACGT | 14215 | 0.0 | 10.03724 | 12-13 |
CGTCTGA | 14310 | 0.0 | 9.988045 | 16-17 |
CACCGAT | 14430 | 0.0 | 9.851069 | 30-31 |
CCGATGT | 14610 | 0.0 | 9.633491 | 32-33 |