Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945632.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 50643166 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 469781 | 0.9276296035678339 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 225601 | 0.4454717542738146 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 125805 | 0.0 | 55.64775 | 9 |
AGAGCGG | 138020 | 0.0 | 55.04233 | 8 |
GCGGTTC | 125755 | 0.0 | 54.60539 | 11 |
AGCGGTT | 127110 | 0.0 | 54.338818 | 10 |
TATGCCG | 106115 | 0.0 | 52.903675 | 43 |
CGTATGC | 107845 | 0.0 | 52.470295 | 41 |
GTATGCC | 108130 | 0.0 | 52.15443 | 42 |
ATGCCGT | 104690 | 0.0 | 52.108547 | 44 |
TGCCGTC | 104115 | 0.0 | 51.891483 | 45 |
GCCGTCT | 102705 | 0.0 | 51.845844 | 46 |
GAGACCG | 117340 | 0.0 | 51.718235 | 30 |
CGAGACC | 119040 | 0.0 | 51.41041 | 29 |
AATGCCG | 123200 | 0.0 | 51.174496 | 24 |
GAGGGGC | 20425 | 0.0 | 51.087082 | 9 |
GTTCAGC | 131620 | 0.0 | 50.975872 | 14 |
TCGTATG | 112445 | 0.0 | 50.619118 | 40 |
CAGCAGG | 131985 | 0.0 | 50.02718 | 17 |
CCGATAT | 76635 | 0.0 | 49.957294 | 34 |
AGACCGA | 120935 | 0.0 | 49.941536 | 31 |
GGTTCAG | 136835 | 0.0 | 49.6877 | 13 |