Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945624.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40612312 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 68132 | 0.16776193386872434 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 13105 | 0.0 | 40.936176 | 1 |
TATGCCG | 11690 | 0.0 | 40.36629 | 63 |
ATGCCGT | 12520 | 0.0 | 37.15203 | 64 |
TGCCGTC | 12400 | 0.0 | 36.842026 | 65 |
CGCCGTA | 9790 | 0.0 | 36.337315 | 66 |
GCCGTCT | 12440 | 0.0 | 36.19438 | 66 |
CGTATGC | 13365 | 0.0 | 36.172955 | 61 |
GTATGCC | 13115 | 0.0 | 36.13536 | 62 |
GGTCGCC | 10270 | 0.0 | 36.01114 | 63 |
GCCGTAT | 10120 | 0.0 | 35.606476 | 67 |
CCGAGAT | 32590 | 0.0 | 32.22375 | 17 |
GGCATTC | 17930 | 0.0 | 29.57702 | 2 |
CCGTATC | 11300 | 0.0 | 29.451809 | 68 |
CCTGCTG | 16495 | 0.0 | 29.305168 | 8 |
GCTGAAC | 16490 | 0.0 | 28.622007 | 11 |
CGAGATC | 36570 | 0.0 | 28.575207 | 18 |
AACCGAG | 17195 | 0.0 | 28.29546 | 15 |
TGGTCGC | 11930 | 0.0 | 28.222301 | 62 |
TCGTATG | 18020 | 0.0 | 28.105673 | 60 |
GCATTCC | 19630 | 0.0 | 27.77828 | 3 |