Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945608.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 66112654 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 989693 | 1.496979685613589 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 451598 | 0.683073470322338 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 258755 | 0.0 | 59.688732 | 9 |
GCGGTTC | 255175 | 0.0 | 59.3261 | 11 |
AGCGGTT | 259725 | 0.0 | 58.650208 | 10 |
AGAGCGG | 273540 | 0.0 | 58.56015 | 8 |
GTTCAGC | 261515 | 0.0 | 56.586956 | 14 |
TATGCCG | 209970 | 0.0 | 56.30927 | 43 |
CGGTTCA | 267820 | 0.0 | 56.192566 | 12 |
AATGCCG | 247615 | 0.0 | 56.18083 | 24 |
GGTTCAG | 267620 | 0.0 | 55.997993 | 13 |
CAGCAGG | 259910 | 0.0 | 55.9217 | 17 |
CGTATGC | 215015 | 0.0 | 55.78762 | 41 |
ATGCCGT | 193115 | 0.0 | 55.761696 | 44 |
GTATGCC | 214735 | 0.0 | 55.697113 | 42 |
GAGACCG | 241520 | 0.0 | 55.684532 | 30 |
TGCCGTC | 191555 | 0.0 | 55.486607 | 45 |
CGAGACC | 244045 | 0.0 | 55.47768 | 29 |
CAGGAAT | 257615 | 0.0 | 55.18906 | 20 |
GACCGAT | 239585 | 0.0 | 55.097633 | 32 |
GCCGTCT | 182910 | 0.0 | 55.046394 | 46 |
GAATGCC | 255080 | 0.0 | 54.849133 | 23 |