FastQCFastQC Report
Wed 16 Nov 2016
SRR1945478.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945478.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41718008
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG584650.14014331652652254Illumina Paired End PCR Primer 2 (100% over 31bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG522110.12515218847457915Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT127850.043.337531
CGGCGCG34850.036.14386712
CGGGGGT72700.035.5321539
GCGGCGC42050.035.28122311
GGGGGTC89300.032.68974740
TGGTCGC134650.032.3062862
GCTGAAC163100.031.64330311
GGGTCGC91050.031.51885442
GGCATTC179950.031.278532
TCGGGGG107550.031.24321438
TATGCCG134750.031.00783263
CCTGCTG172750.030.9876758
GCATTCC188150.029.9531753
ATGCCGT140750.029.53613564
CTCGGGG95450.029.29856937
ATTCCTG211050.029.1917345
TGCCGTC142850.028.9551165
TTCCTGC219400.028.9261576
GCCGTAT150900.028.82914467
CCGTATC153400.028.49682268