Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945507.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 51390762 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 25260 | 0.0 | 11.777103 | 5 |
CATACAC | 141740 | 0.0 | 10.676566 | 3 |
TATACCG | 16525 | 0.0 | 10.608048 | 5 |
TATACAG | 23435 | 0.0 | 10.588565 | 5 |
CTATACT | 27125 | 0.0 | 10.482232 | 4 |
GTATAGA | 33365 | 0.0 | 10.475027 | 1 |
ACATGAC | 113450 | 0.0 | 10.4018955 | 8 |
GTATATA | 75360 | 0.0 | 10.33658 | 1 |
ACACATG | 144950 | 0.0 | 10.284497 | 6 |
CATGACA | 117380 | 0.0 | 10.081852 | 9 |
CACATGA | 139200 | 0.0 | 10.007073 | 7 |
GTACTAG | 18750 | 0.0 | 9.809185 | 1 |
TCATACA | 155045 | 0.0 | 9.654353 | 2 |
ATACTGT | 25880 | 0.0 | 9.588216 | 6 |
ATCATAC | 155775 | 0.0 | 9.524044 | 1 |
GTATTAG | 30240 | 0.0 | 9.519784 | 1 |
GTATAGG | 19255 | 0.0 | 9.429774 | 1 |
GTGTATG | 134570 | 0.0 | 9.395903 | 1 |
GTATTAT | 40445 | 0.0 | 9.374059 | 1 |
TAGGCCG | 6820 | 0.0 | 9.371793 | 5 |