FastQCFastQC Report
Wed 16 Nov 2016
SRR1945492.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945492.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91209726
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG429250.021.723383
GATCGGA485650.019.5701961
GTCACGC199350.018.3421328-29
CGGAAGA540150.017.8548854
GAGCACA440300.017.7497279
AGAGCAC445250.017.7211768
TCACGCC208000.017.68093530-31
ATCGGAA545600.017.6508542
CACGCCA225350.016.67420430-31
GCACACG257950.014.90267610-11
CGCCAAT254450.014.37896932-33
ACGTCTG275200.013.83187914-15
AGTCACG272250.013.69826328-29
GAAGAGC702850.013.6334366
CGTCTGA299550.012.96659216-17
CACGTCT324500.012.07078314-15
TCCAGTC317700.012.06292724-25
CCAGTCA325400.011.80683326-27
ACGCCAA329100.011.76713932-33
ACACGTC335250.011.53654412-13