FastQCFastQC Report
Wed 16 Nov 2016
SRR1945697.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945697.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78127686
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC115000.015.03501653
CGCCGTA100300.014.83205156
GCCGTAT113150.013.33309457
TATGCCG104900.012.61220753
CGTGTAG156950.012.57798325
TGGTCGC138750.012.53534652
AGCGTCG165100.012.06129720
GCGTCGT171050.011.64253421
GAGCGTC174400.011.59814419
CCGTATC138800.010.9675558
GTCGTGT186250.010.91846623
CGTATGC122000.010.69907151
GTATGCC132700.010.10045252
CGTCGTG201750.09.99234222
CTCGGTG204700.09.74366547
GTCGCCG188700.09.72005554
TCGGTGG204300.09.60824848
TCGTGTA221400.09.37541724
CCGGCAT83350.09.1195091
GAGACCG221150.09.03956240