FastQCFastQC Report
Wed 16 Nov 2016
SRR1945545.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945545.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30305430
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGTAC139000.014.0727843
GTACTAG197600.012.858751
GTACTAC156200.012.729916
TAGACCG114700.012.6667855
TGTAGGG184550.012.3068062
CCGTGAG115950.012.0400639
TATACTG146700.011.9870655
TATACCG97600.011.9473955
GACCGTG94050.011.8455787
AGACCGT112000.011.8357866
CCTAGTA159850.011.7962492
TACTAGG216300.011.6307972
ACCGTGA141900.011.3956348
TAGTACT295150.011.3265644
GTAGGGA178200.011.2937353
GATACCC171500.011.1555958
CTATACT147100.011.0914464
TATACAG143500.010.976515
TAGCGGG97800.010.9101339
CATACAC799800.010.8942033