FastQCFastQC Report
Wed 16 Nov 2016
SRR1945622.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945622.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72790362
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC142600.025.2882953
CGCCGTA139200.024.75029256
GCCGTAT141800.024.41192257
TATGCCG130700.022.47936253
CGTATGC145150.021.10688251
TGGTCGC171650.020.96599452
CCGTATC170750.020.13095958
GTATGCC157350.019.07060252
CGTGTAG202550.018.78417825
ATGCCGT147350.017.44847554
TGCCGTC142200.017.41565955
GAGCGTC224600.017.04486319
AGCGTCG222450.017.02924720
GCGTCGT226800.016.91662621
CGTATCA207350.016.61235859
GTCGTGT234450.016.40583223
GCCGTCT144400.015.88985556
CTCGGTG243400.015.57184547
GAGACCG251550.015.53016640
TCGGTGG248650.015.24374148