FastQCFastQC Report
Wed 16 Nov 2016
SRR1945759.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945759.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42360782
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2260790.5336988349270795No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC1402310.3310396866611197No Hit
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG544260.12848204738052288Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT115750.036.4240041
TATGCCG98750.035.0858663
ATGCCGT104950.031.643564
CGTATGC112050.031.63914561
CGCCGTA82350.031.3451966
GCCGTAT83300.031.28593367
GTATGCC112250.031.11562
TGCCGTC103600.030.93857265
GGTCGCC92600.029.19817463
GCCGTCT109200.029.0015966
CCGAGAT297450.027.2442417
CGAGATC319150.025.40342318
CCGTATC97400.024.88785268
TCGTATG153500.024.39801660
CCTGCTG154000.024.0699718
GGCATTC174650.023.770932
GCATTCC183150.023.6368473
GCTGAAC154250.023.2380411
AACCGAG158600.023.17027715
TGGTCGC109250.022.75734562