Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945617.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 51666884 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 153682 | 0.29744778105836617 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 36520 | 0.0 | 42.84009 | 43 |
CGTATGC | 37685 | 0.0 | 41.61011 | 41 |
ATGCCGT | 37450 | 0.0 | 41.364506 | 44 |
GTATGCC | 38200 | 0.0 | 41.104 | 42 |
TGCCGTC | 37715 | 0.0 | 41.058678 | 45 |
GCCGTCT | 38375 | 0.0 | 40.172665 | 46 |
AGAGCGG | 51860 | 0.0 | 38.25208 | 8 |
GAGCGGT | 48990 | 0.0 | 38.003765 | 9 |
GAGACCG | 42190 | 0.0 | 37.56115 | 30 |
TCGTATG | 42215 | 0.0 | 37.24428 | 40 |
GCGGTTC | 48665 | 0.0 | 37.116154 | 11 |
CGAGACC | 43550 | 0.0 | 36.77292 | 29 |
AGCGGTT | 50745 | 0.0 | 35.95986 | 10 |
AATGCCG | 45925 | 0.0 | 35.79118 | 24 |
GACCGAT | 44110 | 0.0 | 35.59512 | 32 |
CCGATAT | 33130 | 0.0 | 35.483418 | 34 |
GGTCGCC | 22540 | 0.0 | 34.99211 | 43 |
TGCCGAG | 46690 | 0.0 | 34.793125 | 26 |
AGACCGA | 46010 | 0.0 | 34.527683 | 31 |
TATCGTA | 34340 | 0.0 | 34.125156 | 38 |