FastQCFastQC Report
Wed 16 Nov 2016
SRR1945442.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945442.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48712152
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG246100.015.8015875
TATACCG141650.014.4491455
GTCGCGC25350.014.2662498
CTATACT257700.014.1069064
CATACAC1460550.013.7222323
TATGAGC194800.013.55698994
TCTATAC283000.013.45105653
TAGGCTG147450.013.1706035
ACATGAC1070650.013.1569318
TATACAG224950.013.0976965
ACACATG1462450.013.0675696
GTGTATG1324650.012.6178561
CATGACA1104300.012.4849359
GTATATA684550.012.4716331
GTATAGA302800.012.4283851
TCATACA1588800.012.4234322
CACATGA1379400.012.38783557
CTAGGCT137900.012.3529764
ATCATAC1552350.012.3231161
TACCGTG124050.012.1633647