FastQCFastQC Report
Wed 16 Nov 2016
SRR1945456.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945456.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47994556
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG160350.016.9783885
TACCGTG106800.015.1968297
ATACCGT142200.014.5599216
CCGTGAG113700.014.3327759
CATACAC1344700.014.0010893
TCTATAC307900.013.7222213
ACACATG1340550.013.1971126
CTATACT247300.013.1406774
TATACTG243350.013.084715
ACCGTGA149400.012.9402038
ACATGAC1000700.012.76044758
GTGTATG1224600.012.62099551
TATACAG227050.012.4937885
TCATACA1468750.012.4170682
GTATAGA329400.012.3892491
CTAGTAC147950.012.3813193
CATGACA1032450.012.3246259
CACATGA1307650.012.3243867
TATGAGC201150.012.19928194
CTATACC235000.012.1479924