Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945508.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 63121436 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 36 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 36500 | 0.0 | 16.423437 | 4 |
AGAGCGT | 19850 | 0.0 | 15.102039 | 9 |
GGTCGCC | 8655 | 0.0 | 14.349212 | 44-45 |
CGGAAGA | 47030 | 0.0 | 12.91059 | 5 |
GATCGGA | 47545 | 0.0 | 12.81889 | 2 |
CGCCGTA | 9735 | 0.0 | 12.67339 | 46-47 |
AAGAGCG | 24490 | 0.0 | 12.278006 | 8 |
ATCGGAA | 51640 | 0.0 | 11.978415 | 3 |
GAGCGTC | 13195 | 0.0 | 11.359371 | 10-11 |
GCACACG | 13610 | 0.0 | 11.280385 | 12-13 |
GAAGAGC | 57730 | 0.0 | 10.818916 | 7 |
AGAGCAC | 28995 | 0.0 | 10.731087 | 9 |
AGCGTCG | 13760 | 0.0 | 10.727649 | 10-11 |
GTCACGG | 13055 | 0.0 | 10.662627 | 30-31 |
GCGTCGT | 14255 | 0.0 | 10.450868 | 12-13 |
CACGGCT | 13485 | 0.0 | 10.39406 | 32-33 |
AGTCACG | 14555 | 0.0 | 10.31305 | 28-29 |
TGGTCGC | 11050 | 0.0 | 10.267815 | 42-43 |
TGCCGTC | 9715 | 0.0 | 10.257363 | 48-49 |
TATGCCG | 10395 | 0.0 | 10.169779 | 46-47 |