FastQCFastQC Report
Wed 16 Nov 2016
SRR1945538.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945538.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30294512
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGCG19550.012.7408487
CCGTGCG18850.011.9676979
CTATACT158200.011.5263834
TATACTG154800.011.3241525
TCTATAC187300.010.8654223
TATACCG99700.010.6532255
CATACAC769050.010.6155313
GTACTAG117900.010.3709651
GTATATA447450.010.1844811
ACACATG802900.010.0795286
GCCGTGC32250.010.0552848
AGCGCGC34650.010.0369898
TAGAGCG53150.09.9917835
GTATAGA200400.09.8327711
ACATGAC620900.09.79462058
TATACAG139750.09.6851985
GTATAGG114850.09.622691
CACATGA782450.09.550147
GCGCGCC24700.09.5137959
GTGTATG756050.09.4796891