FastQCFastQC Report
Wed 16 Nov 2016
SRR1945701.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945701.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43257130
Sequences flagged as poor quality0
Sequence length100
%GC37

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC111300.015.64621248-49
TATGCCG130600.014.647346-47
GCCGTCT116700.014.51946448-49
ATGCCGT124050.013.94303846-47
CGTATGC152800.012.61110244-45
GTATGCC152400.012.30496944-45
CCGTCTT191950.09.43960850-51
TCGTATG227150.08.441942-43
CTCGTAT209450.07.685515442-43
CTGCTTG198200.06.8651356-57
CACAGTG337150.06.53094832-33
TCTCGTA237100.06.42259140-41
CGTCTTC275500.06.372160450-51
GAGCACA790600.05.93809659
CAGTGAT357000.05.85850634-35
ACAGTGA402150.05.814335334-35
AGAGCAC812200.05.80332048
AGTGATC302250.05.68359936-37
ATCTCGT282650.05.64530840-41
CTTCTGC292000.05.641618754-55