Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945613.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 57501390 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 181871 | 0.31628974534354737 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 61062 | 0.1061922155273116 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 44255 | 0.0 | 45.28825 | 43 |
TGCCGTC | 43980 | 0.0 | 44.666084 | 45 |
CGTATGC | 45530 | 0.0 | 44.195637 | 41 |
ATGCCGT | 45335 | 0.0 | 43.682518 | 44 |
GTATGCC | 46050 | 0.0 | 43.630272 | 42 |
GCCGTCT | 45025 | 0.0 | 43.42278 | 46 |
GAGACCG | 49880 | 0.0 | 41.529575 | 30 |
CGAGACC | 51035 | 0.0 | 40.89224 | 29 |
AGAGCGG | 63345 | 0.0 | 40.73357 | 8 |
GAGCGGT | 59155 | 0.0 | 40.672688 | 9 |
AATGCCG | 52950 | 0.0 | 40.370464 | 24 |
TCGTATG | 50690 | 0.0 | 39.67451 | 40 |
GACCGAT | 51655 | 0.0 | 39.54722 | 32 |
TGCCGAG | 53740 | 0.0 | 39.30505 | 26 |
GCGGTTC | 59385 | 0.0 | 39.191025 | 11 |
CCGATAT | 38055 | 0.0 | 38.789616 | 34 |
AGACCGA | 53640 | 0.0 | 38.673134 | 31 |
AGCGGTT | 61310 | 0.0 | 38.36549 | 10 |
ATGCCGA | 55520 | 0.0 | 38.266754 | 25 |
GGGCGCC | 8000 | 0.0 | 37.877796 | 43 |