FastQCFastQC Report
Wed 16 Nov 2016
SRR1945439.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945439.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55113896
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG170050.015.9036295
CCGTGAG150650.015.6179089
CTAGTAC203150.015.5576863
TACCGTG124650.014.8587657
TAGACCG134000.014.7457835
TATACTG267000.014.5870195
ACCGTGA192200.014.2627578
CTATACT280050.014.1580414
TCTATAC346950.014.0895573
CATACAC1682450.014.0861963
GACCGTG100650.013.8605097
ATACCGT159350.013.8043026
ACATGAC1469300.013.7437318
GGCAGAC127000.013.6527694
ACACATG1715000.013.2760836
CATGACA1501600.013.2248859
AGACCGT129450.013.2043486
GTACTAC235200.013.0975936
GGCTGGC238300.013.05971194
GTGTATG1509050.013.0424141