FastQCFastQC Report
Wed 16 Nov 2016
SRR1945558.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945558.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20510680
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG69200.014.3372385
TATACTG111550.014.1631175
TCTATAC142300.013.3505613
GTATAGG78150.013.127091
GTATAGA154100.012.9175081
CTATACT115650.012.766544
GTACTAG92950.012.7076521
CTAGTAC67900.012.6737283
TAGACTG47550.012.4597465
CCGTGAG52700.012.041049
TATACAG117100.011.805375
CATACAC438500.011.4745923
TAGACCG50800.011.2923755
ACATGAC359550.011.2694758
CTATACC97900.011.2388624
GTATTAG140750.011.2004991
ACCGTGA69700.010.9928568
ACACATG450950.010.924446
CATGACA365450.010.8942259
ACTGTGC36350.010.862528