Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945690.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 80753762 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 11290 | 0.0 | 19.920303 | 56 |
GCCGTAT | 12465 | 0.0 | 18.014599 | 57 |
GGTCGCC | 14535 | 0.0 | 17.131807 | 53 |
TATGCCG | 10665 | 0.0 | 16.855455 | 53 |
CCGTATC | 14560 | 0.0 | 15.182215 | 58 |
CGTATGC | 12480 | 0.0 | 14.989733 | 51 |
TGGTCGC | 16560 | 0.0 | 14.739286 | 52 |
GTATGCC | 13505 | 0.0 | 14.034149 | 52 |
CGTGTAG | 20480 | 0.0 | 13.234566 | 25 |
ATGCCGT | 11400 | 0.0 | 12.732693 | 54 |
CGTATCA | 19755 | 0.0 | 11.720783 | 59 |
GTCGTGT | 23100 | 0.0 | 11.581426 | 23 |
GCGTCGT | 23655 | 0.0 | 11.33884 | 21 |
CTCGGTG | 24340 | 0.0 | 11.277482 | 47 |
AGCGTCG | 23710 | 0.0 | 11.179699 | 20 |
GAGACCG | 24930 | 0.0 | 11.160262 | 40 |
TGTAGGG | 24355 | 0.0 | 11.131865 | 27 |
TGCCGTC | 12425 | 0.0 | 11.119424 | 55 |
GAGCGTC | 24085 | 0.0 | 11.092774 | 19 |
TCGTATG | 18185 | 0.0 | 11.056114 | 50 |