FastQCFastQC Report
Wed 16 Nov 2016
SRR1945588.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945588.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73026658
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA83350.06.75569466
CGGCATT107850.06.74648331
GCCGTAT85500.06.625530267
GAGACCG349150.06.0663970
GGTCGCC89200.06.015449563
GATCTCG367850.06.004634470
AATGCCG519800.05.914162670
CGAGACC382800.05.569586370
GACCGAT306250.05.52610770
GAATGCC650350.05.521052470
AGACCGA373250.05.459673470
TGCCGAG493350.05.3117670
TATGCCG79500.05.249541363
ATGCCGA560750.05.196020670
CCGTATC112550.05.183800768
CCGATAT191350.05.142570