Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945490.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33784464 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGTC | 7510 | 0.0 | 18.64587 | 9 |
TCGGAAG | 19355 | 0.0 | 16.163794 | 3 |
GATCGGA | 22005 | 0.0 | 14.583284 | 1 |
CGGAAGA | 21745 | 0.0 | 14.581085 | 4 |
ATCGGAA | 23095 | 0.0 | 14.014142 | 2 |
AGAGCGT | 10920 | 0.0 | 12.995431 | 8 |
CGCCGTA | 5595 | 0.0 | 12.766685 | 46-47 |
TATGCCG | 6810 | 0.0 | 12.524609 | 46-47 |
CGTATGC | 6945 | 0.0 | 12.450854 | 44-45 |
GGTCGCC | 5590 | 0.0 | 12.234562 | 42-43 |
GCCGTCT | 7290 | 0.0 | 12.120376 | 48-49 |
TGCCGTC | 7215 | 0.0 | 11.920666 | 48-49 |
GAGCACA | 14000 | 0.0 | 11.915346 | 9 |
GCACACG | 7260 | 0.0 | 11.908376 | 10-11 |
ATGCCGT | 7490 | 0.0 | 11.732605 | 46-47 |
AAGAGCG | 12955 | 0.0 | 11.642743 | 7 |
GCCGTAT | 6420 | 0.0 | 11.638493 | 46-47 |
GTATGCC | 7840 | 0.0 | 11.47906 | 44-45 |
AGAGCAC | 15430 | 0.0 | 11.11561 | 8 |
GAAGAGC | 31230 | 0.0 | 10.230972 | 6 |