Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945581.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40005324 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 13845 | 0.0 | 15.178547 | 5 |
TATACTG | 20315 | 0.0 | 14.998312 | 5 |
CTATACT | 20930 | 0.0 | 14.985733 | 4 |
CATACAC | 134980 | 0.0 | 14.008519 | 3 |
TCTATAC | 26150 | 0.0 | 13.930544 | 3 |
ACATGAC | 100295 | 0.0 | 13.769159 | 8 |
TACCGTG | 10095 | 0.0 | 13.493399 | 7 |
ACACATG | 134950 | 0.0 | 13.473897 | 6 |
CACATGA | 130860 | 0.0 | 13.340318 | 7 |
CATGACA | 103265 | 0.0 | 13.173481 | 9 |
TATACAG | 19450 | 0.0 | 12.923899 | 5 |
TCATACA | 144535 | 0.0 | 12.898983 | 2 |
GTGTATG | 119545 | 0.0 | 12.825941 | 1 |
ATCATAC | 135175 | 0.0 | 12.805866 | 1 |
ATACCGT | 12325 | 0.0 | 12.7606945 | 6 |
GTCGCGC | 1695 | 0.0 | 12.688949 | 8 |
GTATATA | 61540 | 0.0 | 12.592065 | 1 |
GTATAGA | 28085 | 0.0 | 12.45773 | 1 |
TAGGCTG | 11320 | 0.0 | 12.428925 | 5 |
ACTGTGC | 6380 | 0.0 | 12.290555 | 8 |