FastQCFastQC Report
Wed 16 Nov 2016
SRR1945710.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945710.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59670226
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG932590.15629067669359925Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA202350.039.78657556
GCCGTAT207400.038.88417457
GGTCGCC231700.038.6448253
TGGTCGC246900.035.6859852
CCGTATC227800.034.77174858
GGCTGAT261000.030.8664132
CGTATCA249650.030.8412959
TCGGTGG313300.030.57003448
CTCGGTG314050.030.39366147
ATCAGCC259400.030.1528872
GGTGGTC310500.028.7824150
GTCGCCG316850.028.4028354
TATGCCG227050.027.9308153
GAGTGTA358500.026.77653337
CGGTGGT351850.025.90667249
CAGCCAA397200.025.6740724
CGTATGC257950.025.59162151
TGGCTGA321750.025.2322181
TCGCCGT321350.025.10604955
AGTGTAG383400.025.09238