Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945574.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25799186 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 9335 | 0.0 | 19.309551 | 5 |
GTCGCGC | 1035 | 0.0 | 17.632753 | 8 |
ATACCGT | 8150 | 0.0 | 17.228153 | 6 |
TACCGTG | 7240 | 0.0 | 17.195597 | 7 |
CCGTGAG | 7075 | 0.0 | 17.063633 | 9 |
TCTATAC | 17520 | 0.0 | 17.049925 | 3 |
TATACTG | 13280 | 0.0 | 15.794494 | 5 |
CTAGTAC | 9635 | 0.0 | 15.355758 | 3 |
ACCGTGA | 9405 | 0.0 | 15.075778 | 8 |
GTATAGA | 19260 | 0.0 | 14.980383 | 1 |
TATACAG | 13225 | 0.0 | 14.868918 | 5 |
CTATACT | 13770 | 0.0 | 14.688466 | 4 |
ACATGAC | 74975 | 0.0 | 14.667202 | 8 |
CTATACC | 13980 | 0.0 | 14.501314 | 4 |
CATACAC | 98895 | 0.0 | 14.382995 | 3 |
ACACATG | 96945 | 0.0 | 14.121326 | 6 |
CATGACA | 76790 | 0.0 | 14.094484 | 9 |
CACATGA | 93345 | 0.0 | 14.069245 | 7 |
TAGGCTG | 7010 | 0.0 | 13.825413 | 5 |
GATTGAG | 81190 | 0.0 | 13.569945 | 7 |