FastQCFastQC Report
Wed 16 Nov 2016
SRR1945662.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945662.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67405676
Sequences flagged as poor quality0
Sequence length76
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT1992750.059.4264269
GCGGTTC1943250.059.3056511
AGCGGTT1977100.058.7559810
AGAGCGG2085150.057.2358978
GTTCAGC2003850.055.6964414
GAGACCG1725050.055.48169330
CGGTTCA2064300.055.47098512
CGAGACC1738100.055.3028929
AATGCCG1805650.055.28199424
GGTTCAG2079450.054.50935713
CAGCAGG2020250.054.35784517
AGACCGA1755550.053.8245531
GACCGAT1584300.053.76244732
TGCCGAG1818350.053.6001626
GAATGCC1903550.053.26743723
ATGCCGA1846100.053.1159625
CAGGAAT1989300.052.96343620
GCAGGAA2021400.052.95794319
TATGCCG551650.052.90358743
CCGATAT1052750.052.60060534