Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945746.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 87625042 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 63970 | 0.0 | 10.948271 | 4 |
AGAGCGT | 34950 | 0.0 | 10.461933 | 9 |
GGTCGCC | 18170 | 0.0 | 10.129343 | 44-45 |
GATCGGA | 76390 | 0.0 | 9.50942 | 2 |
CGCCGTA | 19565 | 0.0 | 9.308835 | 46-47 |
CGGAAGA | 76570 | 0.0 | 9.282353 | 5 |
ATCGGAA | 81425 | 0.0 | 9.083213 | 3 |
AAGAGCG | 42020 | 0.0 | 9.081853 | 8 |
TATGCCG | 19395 | 0.0 | 9.050017 | 48-49 |
TGCCGTC | 19525 | 0.0 | 8.999341 | 50-51 |
GCCGTCT | 20350 | 0.0 | 8.552148 | 52-53 |
TGGTCGC | 21895 | 0.0 | 8.333786 | 42-43 |
ATGCCGT | 21125 | 0.0 | 8.284463 | 50-51 |
AGAGCAC | 48445 | 0.0 | 8.027141 | 9 |
AGTCACG | 26485 | 0.0 | 8.010389 | 28-29 |
CGTATGC | 22975 | 0.0 | 7.978077 | 46-47 |
GAAGAGC | 95865 | 0.0 | 7.774153 | 7 |
GTATGCC | 23835 | 0.0 | 7.5900083 | 48-49 |
GCACACG | 25820 | 0.0 | 7.565629 | 12-13 |
GCCGTAT | 24840 | 0.0 | 7.565574 | 48-49 |