Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945668.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 91030016 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 101168 | 0.1111369682720917 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 30155 | 0.0 | 38.808537 | 1 |
ATTCCTG | 46185 | 0.0 | 25.20626 | 5 |
CCTGCTG | 46615 | 0.0 | 24.862707 | 8 |
GGCATTC | 48760 | 0.0 | 24.062351 | 2 |
TTCCTGC | 51845 | 0.0 | 22.662745 | 6 |
GCATTCC | 52355 | 0.0 | 22.625484 | 3 |
TCCTGCT | 63510 | 0.0 | 18.603765 | 7 |
CTGCTGA | 63395 | 0.0 | 18.274376 | 9 |
CGAGATC | 60650 | 0.0 | 17.71702 | 18-19 |
GGCTGAT | 34625 | 0.0 | 17.397285 | 2 |
ATCAGCC | 35595 | 0.0 | 16.302761 | 2 |
GCTGAAC | 39350 | 0.0 | 14.302703 | 10-11 |
GTTCAGC | 77945 | 0.0 | 13.865094 | 3 |
CGCCGTA | 29490 | 0.0 | 13.67066 | 66-67 |
CAGGAAT | 81445 | 0.0 | 13.324534 | 9 |
ATGCCGT | 31915 | 0.0 | 13.139148 | 64-65 |
CATTCCT | 94870 | 0.0 | 13.125034 | 4 |
TATGCCG | 33280 | 0.0 | 13.03696 | 62-63 |
GCCGTAT | 29650 | 0.0 | 13.002273 | 66-67 |
AACCGAG | 41360 | 0.0 | 12.864565 | 14-15 |