Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945513.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33626870 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 15825 | 0.0 | 12.443394 | 5 |
CTATACT | 16865 | 0.0 | 12.149788 | 4 |
TATACCG | 10260 | 0.0 | 11.22244 | 5 |
CATACAC | 108030 | 0.0 | 10.90691 | 3 |
GTATAGA | 21130 | 0.0 | 10.861679 | 1 |
ACATGAC | 86570 | 0.0 | 10.841278 | 8 |
ACACATG | 106700 | 0.0 | 10.698716 | 6 |
TATACAG | 15030 | 0.0 | 10.568814 | 5 |
GTATTAG | 19520 | 0.0 | 10.504693 | 1 |
GTATATA | 47265 | 0.0 | 10.487637 | 1 |
CATGACA | 88785 | 0.0 | 10.449158 | 9 |
GTGTATG | 101905 | 0.0 | 10.434743 | 1 |
ACTGTGC | 5340 | 0.0 | 10.3850975 | 8 |
CACATGA | 103560 | 0.0 | 10.3287735 | 7 |
GTACTAG | 13540 | 0.0 | 10.142404 | 1 |
TCTATAC | 19450 | 0.0 | 10.076466 | 3 |
TAGTACT | 19705 | 0.0 | 10.0409355 | 4 |
GTACTGC | 7125 | 0.0 | 10.02599 | 6 |
TCATACA | 116470 | 0.0 | 10.00385 | 2 |
TAGGCTG | 10295 | 0.0 | 9.860433 | 5 |