Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945618.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35957332 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 70911 | 0.19720873617653278 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 52147 | 0.14502466423259658 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 96655 | 0.0 | 54.699017 | 9 |
AGCGGTT | 95050 | 0.0 | 54.616856 | 10 |
GCGGTTC | 93590 | 0.0 | 54.35577 | 11 |
CGAGACC | 84980 | 0.0 | 53.45621 | 29 |
AATGCCG | 90870 | 0.0 | 53.147 | 24 |
GAGACCG | 84525 | 0.0 | 53.14326 | 30 |
GACCGAT | 79370 | 0.0 | 52.920486 | 32 |
TGCCGAG | 90815 | 0.0 | 52.80668 | 26 |
TATGCCG | 37320 | 0.0 | 52.66314 | 43 |
CGTATGC | 41015 | 0.0 | 52.6246 | 41 |
GTATGCC | 39200 | 0.0 | 52.54131 | 42 |
AGACCGA | 85730 | 0.0 | 52.237427 | 31 |
CGGTTCA | 97020 | 0.0 | 52.223534 | 12 |
GAATGCC | 93380 | 0.0 | 51.96705 | 23 |
GTTCAGC | 97285 | 0.0 | 51.81211 | 14 |
GGTTCAG | 98350 | 0.0 | 51.679737 | 13 |
CAGGAAT | 94170 | 0.0 | 51.61626 | 20 |
ATGCCGA | 94005 | 0.0 | 51.157524 | 25 |
GGAATGC | 95330 | 0.0 | 51.026615 | 22 |
AGAGCGG | 104575 | 0.0 | 50.992332 | 8 |