Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945742.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 36248582 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 17890 | 0.0 | 14.737985 | 5 |
CATACAC | 103465 | 0.0 | 14.36938 | 3 |
TATACCG | 10935 | 0.0 | 13.877588 | 5 |
ACATGAC | 80660 | 0.0 | 13.812014 | 8 |
CTATACT | 19640 | 0.0 | 13.72187 | 4 |
TATACAG | 18145 | 0.0 | 13.618058 | 5 |
ACACATG | 103840 | 0.0 | 13.407624 | 6 |
CATGACA | 83690 | 0.0 | 13.098679 | 9 |
ATCATAC | 108405 | 0.0 | 13.097234 | 1 |
TCATACA | 111795 | 0.0 | 13.085343 | 2 |
CACATGA | 100475 | 0.0 | 12.988111 | 7 |
GTATATA | 51935 | 0.0 | 12.977632 | 1 |
TCTATAC | 22100 | 0.0 | 12.641587 | 3 |
GTGTATG | 90595 | 0.0 | 12.511182 | 1 |
GTATAGA | 23320 | 0.0 | 12.160927 | 1 |
TACACAT | 131930 | 0.0 | 11.950302 | 5 |
GTATTAT | 29745 | 0.0 | 11.670029 | 1 |
TAGGCTG | 9720 | 0.0 | 11.651648 | 5 |
TATATAC | 53820 | 0.0 | 11.53368 | 3 |
TATACTA | 34385 | 0.0 | 11.521456 | 5 |