FastQCFastQC Report
Wed 16 Nov 2016
SRR1945680.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945680.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51274448
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC83900.014.87347648-49
GCACACG93700.014.67425710-11
TATGCCG91100.014.57517546-47
TCGGAAG216050.013.9230213
GAGCACA198900.013.7536259
ATGCCGT95650.013.70985946-47
CGTATGC97650.013.62156744-45
GCCGTCT92350.013.53800448-49
AGAGCAC210700.013.2281928
ACGTCTG108100.012.87396614-15
GTATGCC109250.012.54093644-45
GATCGGA262050.011.3397041
GTCACCG126350.011.19472728-29
CGGAAGA296200.010.5672984
ATCGGAA298150.010.4045192
ACACGTC141400.010.09047912-13
CACACGT142150.010.0372412-13
CGTCTGA143100.09.98804516-17
CACCGAT144300.09.85106930-31
CCGATGT146100.09.63349132-33