FastQCFastQC Report
Wed 16 Nov 2016
SRR1945640.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945640.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57562576
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT4162010.7230409563324616Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT2125760.369295495045253Illumina Paired End PCR Primer 2 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT1244550.053.410419
GCGGTTC1229650.052.67905411
AGAGCGG1330800.052.485098
AGCGGTT1259000.052.13583410
TATGCCG1007350.051.6459843
CGTATGC1034800.050.84018741
ATGCCGT986550.050.73319244
GTATGCC1033650.050.59160242
TGCCGTC979700.050.43160645
GCCGTCT966450.050.12430246
GAGACCG1150100.049.9710230
CGAGACC1163350.049.76867729
TCGTATG1088600.048.8774940
AATGCCG1224050.048.6369124
GACCGAT1147900.048.25993732
AGACCGA1186800.048.13623431
GTTCAGC1317000.048.0779614
CGGTTCA1353800.047.58217212
CAGCAGG1314000.047.33728417
CCGATAT734850.047.32112534