FastQCFastQC Report
Wed 16 Nov 2016
SRR1945505.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945505.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61521972
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG291600.06.70547964
GGTCGCC62900.06.69219544-45
AGAGCGT165750.06.5248489
CGCCGTA75200.05.757429646-47
TATGCCG75600.05.5754646-47
TGCCGTC82750.05.54389348-49
GAGCGTC96100.05.532349610-11
CGGAAGA398550.05.46131475
ATGCCGT88450.05.36815948-49
TGGTCGC87700.05.33942842-43
GCCGTCT90450.05.30766650-51
AGCGTCG106300.05.30072910-11
AAGAGCG211750.05.27905048
GCACACG99000.05.23448412-13
GATCGGA388450.05.20796632
GCGTCGT111950.05.129406512-13