Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945635.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 71521750 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 52 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATGC | 15630 | 0.0 | 14.078336 | 61 |
GTATGCC | 15710 | 0.0 | 13.828837 | 62 |
TCGTATG | 16560 | 0.0 | 13.585186 | 60 |
TATCGTA | 13360 | 0.0 | 10.056976 | 58 |
AGAGCGG | 42345 | 0.0 | 9.209823 | 28 |
CAGGAAT | 38920 | 0.0 | 9.203821 | 9 |
GAGCGGT | 38000 | 0.0 | 8.991049 | 29 |
TCGGAAG | 45040 | 0.0 | 8.637462 | 23 |
GGAATGC | 41735 | 0.0 | 8.618428 | 11 |
AGCGGTT | 39580 | 0.0 | 8.525565 | 30 |
GAGTGTA | 15545 | 0.0 | 8.401878 | 37 |
GGTTCAG | 45450 | 0.0 | 8.053459 | 2 |
AAGGGGG | 23405 | 0.0 | 8.044235 | 45 |
ATCGGAA | 48645 | 0.0 | 7.976374 | 22 |
CGGTTCA | 47015 | 0.0 | 7.8641644 | 1 |
TCGTGTA | 17300 | 0.0 | 7.7109184 | 24 |
AGACCGA | 44995 | 0.0 | 7.698218 | 51 |
AAGAGCG | 49865 | 0.0 | 7.6953645 | 27 |
CGTGTAG | 17365 | 0.0 | 7.6816945 | 25 |
GAATGCC | 49130 | 0.0 | 7.566978 | 12 |