FastQCFastQC Report
Wed 16 Nov 2016
SRR1945645.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945645.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences139067888
Sequences flagged as poor quality0
Sequence length100
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT331650.018.608381
CCTGCTG546050.011.4099998
GGCATTC586050.011.1368662
ATTCCTG613300.010.4345575
GCATTCC669150.010.0000683
TTCCTGC692700.09.2998946
TCCTGCT813250.08.0598977
CTGCTGA829150.07.68417029
CGAGATC722650.07.36960118-19
CGCCGTA282850.06.803862666-67
TATGCCG311400.06.67077962-63
ATGCCGT309850.06.438768464-65
GCCGTAT290400.06.408500766-67
GCTGAAC498000.06.30716410-11
CGTATGC363450.05.85071460-61
GTATGCC387100.05.809405362-63
CAGCAGG926700.05.77524386
GTTCAGC914450.05.73775153
CCGTATC352000.05.72661368-69
GGTCGCC348700.05.701134762-63