FastQCFastQC Report
Wed 16 Nov 2016
SRR1945551.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945551.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112300742
Sequences flagged as poor quality0
Sequence length40-101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC286700.08.03463394-95
TGCCGTC230800.07.259748594-95
GCCGTCT239250.07.003343694-95
CGTATGC387400.06.77480394-95
TATGCCG286750.06.75655794-95
GTATGCC355800.06.751239394-95
TGGTCGC348800.06.547640394-95
ATGCCGT264200.06.20171592-93
GTCGCCG354150.05.96368194-95
CGCCGTA247500.05.799491492-93
CTCGGTG601750.05.512766494-95
TCGTATG521250.05.305249794-95
TCGGTGG580950.05.07999194-95
CACTAGC1085300.05.01040694-95