FastQCFastQC Report
Wed 16 Nov 2016
SRR1945592.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945592.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50985682
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG742800.1456879600041439Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT206450.042.1916581
CCTGCTG263600.033.0266048
GGCATTC273700.032.0597232
GCATTCC277000.031.8102113
ATTCCTG286000.030.5384375
TTCCTGC338000.026.0209166
CTGCTGA367100.023.6126889
TCCTGCT395350.022.186877
CGAGATC397450.020.74107218-19
GGCTGAT207350.020.195932
ATCAGCC210900.020.1902562
CATTCCT475100.018.8827824
CCGAGAT456900.017.68257916-17
CAGCCAA332950.016.7680474
GCTGAAC254750.016.69970510-11
CGCCGTA216200.015.92858866-67
GTTCAGC526600.015.7064083
AACCGAG254000.015.60314414-15
GCCGTAT217800.015.37985766-67
CAGCAGG536850.015.341316