Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945506.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 48220666 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 23510 | 0.0 | 7.3183584 | 4 |
GGTCGCC | 5390 | 0.0 | 7.074554 | 44-45 |
AGAGCGT | 13495 | 0.0 | 6.5124307 | 9 |
GATCGGA | 32260 | 0.0 | 5.813694 | 2 |
TATGCCG | 6380 | 0.0 | 5.763452 | 46-47 |
GAGCGTC | 7975 | 0.0 | 5.7140584 | 10-11 |
CGGAAGA | 32225 | 0.0 | 5.6421227 | 5 |
TGGTCGC | 7050 | 0.0 | 5.6004744 | 42-43 |
GCACACG | 7890 | 0.0 | 5.569307 | 12-13 |
CGCCGTA | 6515 | 0.0 | 5.42833 | 46-47 |
ATCGGAA | 34970 | 0.0 | 5.4205704 | 3 |
AAGAGCG | 17610 | 0.0 | 5.3867393 | 8 |
TGCCGTC | 6675 | 0.0 | 5.2342353 | 48-49 |
ATGCCGT | 7035 | 0.0 | 5.099711 | 48-49 |
AGCGTCG | 8835 | 0.0 | 5.026273 | 10-11 |