Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945595.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39001722 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 20205 | 0.0 | 15.546268 | 5 |
TATACCG | 12880 | 0.0 | 14.820429 | 5 |
CTATACT | 21520 | 0.0 | 14.28395 | 4 |
CATACAC | 121680 | 0.0 | 13.879486 | 3 |
TATACAG | 18975 | 0.0 | 13.814688 | 5 |
ACACATG | 118970 | 0.0 | 13.348303 | 6 |
TCTATAC | 25490 | 0.0 | 13.149166 | 3 |
ACATGAC | 89665 | 0.0 | 13.108263 | 8 |
GTATAGA | 27685 | 0.0 | 12.86244 | 1 |
GTGTATG | 108510 | 0.0 | 12.829942 | 1 |
GTATATA | 58460 | 0.0 | 12.802419 | 1 |
TCATACA | 131050 | 0.0 | 12.637767 | 2 |
CATGACA | 92180 | 0.0 | 12.633875 | 9 |
CACATGA | 114495 | 0.0 | 12.59025 | 7 |
ATCATAC | 128105 | 0.0 | 12.438921 | 1 |
GTATTAT | 32260 | 0.0 | 12.42506 | 1 |
TAATACT | 32490 | 0.0 | 12.274583 | 4 |
TATATAC | 59645 | 0.0 | 12.215548 | 3 |
GTATAGG | 13940 | 0.0 | 12.130645 | 1 |
TATACTA | 37740 | 0.0 | 12.063097 | 5 |