FastQCFastQC Report
Wed 16 Nov 2016
SRR1945587.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945587.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64656644
Sequences flagged as poor quality0
Sequence length76
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT6388110.9880051924748832Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT3691620.5709575647013166Illumina Paired End PCR Primer 2 (100% over 50bp)
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG915770.14163586962540153Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1648050.053.5668943
CGTATGC1680650.052.8518541
GTATGCC1689850.052.7731942
ATGCCGT1540750.052.7401844
TGCCGTC1540600.052.2240745
GCCGTCT1469200.052.21341746
TCGTATG1746800.051.39851440
GAGACCG2120950.050.8018330
GACCGAT2095450.050.58102832
CGAGACC2150850.050.47557429
AGACCGA2149100.050.05501631
CCGATAT1244800.049.85022434
TATCGTA1146200.049.48578638
CCGTCTT1560050.048.87010247
ACCGATA1332000.047.9557433
ATATCGT1201100.047.872937
CGATATC1288650.047.46935
CCGAGAC2311050.047.24661328
GATATCG1288250.047.1871636
AATGCCG2353100.047.11424324