Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945546.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20573114 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1070 | 0.0 | 15.815071 | 8 |
TATACTG | 10595 | 0.0 | 14.200956 | 5 |
CTATACT | 11130 | 0.0 | 13.856299 | 4 |
TCTATAC | 13900 | 0.0 | 12.854692 | 3 |
TATACCG | 7670 | 0.0 | 12.444265 | 5 |
GTATAGA | 14650 | 0.0 | 11.947646 | 1 |
CATACAC | 44055 | 0.0 | 11.633869 | 3 |
GTATATA | 29985 | 0.0 | 11.549171 | 1 |
GTATTAG | 14755 | 0.0 | 11.543737 | 1 |
TATACAG | 11930 | 0.0 | 11.429471 | 5 |
TACCGTG | 5570 | 0.0 | 11.308642 | 7 |
GTATAGG | 8200 | 0.0 | 11.303929 | 1 |
ATACCGT | 7535 | 0.0 | 11.04208 | 6 |
ACACATG | 43290 | 0.0 | 10.9237385 | 6 |
CCGTGAG | 4235 | 0.0 | 10.877003 | 9 |
TAATACT | 19020 | 0.0 | 10.852321 | 4 |
TAGTACT | 10970 | 0.0 | 10.843824 | 4 |
ACATGAC | 36385 | 0.0 | 10.839069 | 8 |
TATACTA | 18430 | 0.0 | 10.740521 | 5 |
TAGACTG | 4955 | 0.0 | 10.72268 | 5 |