FastQCFastQC Report
Wed 16 Nov 2016
SRR1945609.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945609.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36782718
Sequences flagged as poor quality0
Sequence length76
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6341531.7240514961401165No Hit
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG516350.1403784244546583Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAGATC211500.027.87625918
TATGCCG92950.026.59488963
CGGCATT75550.026.5525191
CGTATGC102700.024.84331961
TGCCGTC97900.024.65412165
ATGCCGT95900.024.39380364
GTATGCC106250.023.8195762
CGCCGTA74000.023.59802456
GCCGTAT76700.022.88177157
GCCGTCT101650.022.71192466
GAGACCG181450.022.13312350
CCGAGAT289250.020.76965717
TCGTATG133600.020.3760760
CCGTATC88250.020.00588458
GGTCGCC95800.019.97888853
CGAGACC208950.019.2528249
AGACCGA205750.018.50042551
GACCGAT203200.017.70062852
GAGATCG334850.017.60725219
CGTATCA98950.017.59688659