Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945577.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 52578800 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 18605 | 0.0 | 18.497782 | 5 |
TACCGTG | 14310 | 0.0 | 16.75347 | 7 |
ATACCGT | 17125 | 0.0 | 16.302269 | 6 |
TATACTG | 26975 | 0.0 | 16.14704 | 5 |
TCTATAC | 34590 | 0.0 | 15.740315 | 3 |
CCGTGAG | 12915 | 0.0 | 15.717791 | 9 |
CATACAC | 198520 | 0.0 | 14.5232725 | 3 |
ACATGAC | 134945 | 0.0 | 14.235978 | 8 |
ACACATG | 188920 | 0.0 | 13.949667 | 6 |
TATACAG | 25560 | 0.0 | 13.88521 | 5 |
GTATAGA | 37865 | 0.0 | 13.799701 | 1 |
CTATACT | 28375 | 0.0 | 13.739492 | 4 |
ACCGTGA | 16775 | 0.0 | 13.730653 | 8 |
GTATAGG | 18735 | 0.0 | 13.706387 | 1 |
CACATGA | 184755 | 0.0 | 13.640797 | 7 |
CATGACA | 139240 | 0.0 | 13.619758 | 9 |
CTAGTAC | 16985 | 0.0 | 13.587182 | 3 |
TCATACA | 209610 | 0.0 | 13.469715 | 2 |
GTGTATG | 177830 | 0.0 | 13.182296 | 1 |
ATCATAC | 204165 | 0.0 | 13.114377 | 1 |