FastQCFastQC Report
Wed 16 Nov 2016
SRR1945585.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945585.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17454026
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG65050.013.5136375
ATACCGT53000.013.0347046
GTATAGA107100.012.6468221
TCTATAC102000.012.02868753
TATACAG80250.011.7155565
TACCGTG51200.011.65661057
TATACTG77100.011.6454675
CATACAC549550.011.5821553
ACACATG554650.011.3623846
ACATGAC424600.011.2781148
CTATACT81400.010.9725394
CACATGA534500.010.8669917
GTATATA266250.010.810361
TAGGCTG52700.010.7932615
TCATACA606050.010.5524992
GTATTAG86800.010.5113951
CATGACA447000.010.5027739
GTACTAG67800.010.4743161
TACACTG55400.010.4369425
CTAGTAC53200.010.3383733