FastQCFastQC Report
Wed 16 Nov 2016
SRR1945714.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945714.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165061790
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT311400.017.959081
CGCCGTA193150.014.71892166
GCCGTAT196450.014.70291267
CGAGATC654700.014.69583618
TATGCCG211600.013.23369963
GGTCGCC249700.013.07886463
AATGCCG426500.011.8741813
ATGCCGT226100.011.61104164
CGTATGC251150.011.60651961
GAGACCG392000.011.59645450
GCTGAAC453200.011.54538511
CCTGCTG491800.011.5261058
CGAGACC406800.011.42632349
CCGAGAT900250.011.15667517
GAGATCG877750.010.94957719
GGCATTC542400.010.9286752
CCGTATC270050.010.78672468
CGTGTAG394150.010.54646735
ATTCCTG554350.010.465865
TGGTCGC302400.010.36928862