Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945456.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 47994556 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 16035 | 0.0 | 16.978388 | 5 |
TACCGTG | 10680 | 0.0 | 15.196829 | 7 |
ATACCGT | 14220 | 0.0 | 14.559921 | 6 |
CCGTGAG | 11370 | 0.0 | 14.332775 | 9 |
CATACAC | 134470 | 0.0 | 14.001089 | 3 |
TCTATAC | 30790 | 0.0 | 13.722221 | 3 |
ACACATG | 134055 | 0.0 | 13.197112 | 6 |
CTATACT | 24730 | 0.0 | 13.140677 | 4 |
TATACTG | 24335 | 0.0 | 13.08471 | 5 |
ACCGTGA | 14940 | 0.0 | 12.940203 | 8 |
ACATGAC | 100070 | 0.0 | 12.7604475 | 8 |
GTGTATG | 122460 | 0.0 | 12.6209955 | 1 |
TATACAG | 22705 | 0.0 | 12.493788 | 5 |
TCATACA | 146875 | 0.0 | 12.417068 | 2 |
GTATAGA | 32940 | 0.0 | 12.389249 | 1 |
CTAGTAC | 14795 | 0.0 | 12.381319 | 3 |
CATGACA | 103245 | 0.0 | 12.324625 | 9 |
CACATGA | 130765 | 0.0 | 12.324386 | 7 |
TATGAGC | 20115 | 0.0 | 12.199281 | 94 |
CTATACC | 23500 | 0.0 | 12.147992 | 4 |