Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945623.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 54457934 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 1091156 | 2.003667638217785 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 414877 | 0.7618302229386814 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG | 122153 | 0.22430707709183384 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 91522 | 0.16805999287450016 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGC | 74809 | 0.13737024985193158 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGG | 57024 | 0.10471201496553284 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 348905 | 0.0 | 59.708885 | 9 |
AGCGGTT | 345520 | 0.0 | 59.601837 | 10 |
GCGGTTC | 344045 | 0.0 | 59.573006 | 11 |
AGAGCGG | 366785 | 0.0 | 58.057674 | 8 |
TATGCCG | 234460 | 0.0 | 57.38852 | 43 |
CGTATGC | 240390 | 0.0 | 57.059444 | 41 |
ATGCCGT | 202505 | 0.0 | 56.885864 | 44 |
GTATGCC | 239340 | 0.0 | 56.85271 | 42 |
TGCCGTC | 195170 | 0.0 | 56.78935 | 45 |
GTTCAGC | 354690 | 0.0 | 56.716866 | 14 |
CGGTTCA | 360205 | 0.0 | 56.560204 | 12 |
GCCGTCT | 181600 | 0.0 | 56.4552 | 46 |
GGTTCAG | 360395 | 0.0 | 56.360046 | 13 |
CAGCAGG | 352080 | 0.0 | 56.025948 | 17 |
AATGCCG | 334425 | 0.0 | 56.004147 | 24 |
GAGACCG | 322760 | 0.0 | 55.856983 | 30 |
CGAGACC | 325735 | 0.0 | 55.847157 | 29 |
TCGTATG | 260215 | 0.0 | 55.838535 | 40 |
CAGGAAT | 346150 | 0.0 | 55.449467 | 20 |
CCGATAT | 217525 | 0.0 | 55.40855 | 34 |