FastQCFastQC Report
Wed 16 Nov 2016
SRR1945557.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945557.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31007444
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG112000.014.0220335
CTAGTAC117450.013.2522323
TATACTG158650.013.0998015
CCGTGAG102500.012.3819179
GTATAGG110850.012.2678511
CATACAC1022950.012.2413913
ACATGAC779800.012.1043988
TCTATAC205400.012.0191263
ACACATG998000.011.9826296
CATGACA789200.011.8406989
ATACCGT112050.011.7885396
TACCGTG91900.011.7646197
CTATACT162300.011.762244
CACATGA967250.011.6588857
ACCGTGA121800.011.5780838
GTACTAC140750.011.4220286
TCATACA1105350.011.2611172
GTACTAG157850.011.2383641
TAGTACT252350.011.2356064
TAGACCG80800.011.1730665