Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945736.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44093790 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 23685 | 0.0 | 15.27274 | 5 |
CATACAC | 114465 | 0.0 | 14.5717535 | 3 |
TATACAG | 22740 | 0.0 | 13.918998 | 5 |
CTATACT | 24940 | 0.0 | 13.8115225 | 4 |
ACACATG | 116470 | 0.0 | 13.614993 | 6 |
GTGTATG | 100320 | 0.0 | 13.2944 | 1 |
TCATACA | 125630 | 0.0 | 13.143656 | 2 |
ACATGAC | 89785 | 0.0 | 13.111424 | 8 |
TCTATAC | 29185 | 0.0 | 13.049047 | 3 |
ATCATAC | 122655 | 0.0 | 13.02353 | 1 |
CACATGA | 112060 | 0.0 | 12.804814 | 7 |
CATGACA | 91875 | 0.0 | 12.578877 | 9 |
GTATATA | 67830 | 0.0 | 12.469275 | 1 |
GTATTAG | 25860 | 0.0 | 12.4004135 | 1 |
TATACCG | 13390 | 0.0 | 12.370868 | 5 |
CTAGTAC | 13065 | 0.0 | 12.237233 | 3 |
TATATAC | 69810 | 0.0 | 12.216588 | 3 |
GTATAGA | 30930 | 0.0 | 12.12047 | 1 |
TACACAT | 145415 | 0.0 | 12.102436 | 5 |
TATACTA | 44540 | 0.0 | 12.071793 | 5 |