Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945598.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43671866 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 22330 | 0.0 | 16.314117 | 5 |
TATACCG | 13700 | 0.0 | 15.732084 | 5 |
CATACAC | 147530 | 0.0 | 14.955431 | 3 |
ACATGAC | 113030 | 0.0 | 14.6165085 | 8 |
ACACATG | 145650 | 0.0 | 14.444062 | 6 |
CACATGA | 140370 | 0.0 | 14.048866 | 7 |
CATGACA | 116785 | 0.0 | 13.912415 | 9 |
CTATACT | 23030 | 0.0 | 13.794742 | 4 |
TCATACA | 158070 | 0.0 | 13.752995 | 2 |
ATCATAC | 151120 | 0.0 | 13.50795 | 1 |
TATACAG | 21035 | 0.0 | 13.505432 | 5 |
TCTATAC | 26960 | 0.0 | 13.279696 | 3 |
GTGTATG | 130660 | 0.0 | 13.219592 | 1 |
TACCGTG | 10860 | 0.0 | 13.203358 | 7 |
TACACAT | 172825 | 0.0 | 13.0413685 | 5 |
TAGGCTG | 13065 | 0.0 | 12.724076 | 5 |
GTATAGA | 29800 | 0.0 | 12.625271 | 1 |
GTCGCGC | 1975 | 0.0 | 12.478426 | 8 |
ATACTGT | 21500 | 0.0 | 12.442284 | 6 |
ATACACA | 187445 | 0.0 | 12.351675 | 4 |