Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945628.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35723252 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 551146 | 1.542821465414179 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 6820 | 0.0 | 27.812613 | 56 |
GCCGTAT | 7245 | 0.0 | 26.444574 | 57 |
GGTCGCC | 8095 | 0.0 | 24.596926 | 53 |
CCGTATC | 8385 | 0.0 | 22.432066 | 58 |
TATGCCG | 7080 | 0.0 | 21.401295 | 53 |
CGTATGC | 7750 | 0.0 | 20.135534 | 51 |
TGGTCGC | 10145 | 0.0 | 19.797897 | 52 |
CGTATCA | 9315 | 0.0 | 19.668385 | 59 |
TGCCGTC | 7765 | 0.0 | 19.244253 | 55 |
ATGCCGT | 7825 | 0.0 | 18.783054 | 54 |
GTATGCC | 8400 | 0.0 | 18.412052 | 52 |
GCCGTCT | 8570 | 0.0 | 16.62036 | 56 |
TCGTATG | 10105 | 0.0 | 16.238678 | 50 |
CTCGGTG | 13760 | 0.0 | 15.890068 | 47 |
TCGGTGG | 13840 | 0.0 | 15.747952 | 48 |
GGTGGTC | 13080 | 0.0 | 15.541128 | 50 |
CGTGTAG | 13905 | 0.0 | 15.261427 | 25 |
GAGACCG | 13290 | 0.0 | 14.948332 | 40 |
GGCTGAT | 11320 | 0.0 | 14.820848 | 2 |
ATCAGCC | 11730 | 0.0 | 14.332611 | 2 |