FastQCFastQC Report
Wed 16 Nov 2016
SRR1945628.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945628.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35723252
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5511461.542821465414179No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA68200.027.81261356
GCCGTAT72450.026.44457457
GGTCGCC80950.024.59692653
CCGTATC83850.022.43206658
TATGCCG70800.021.40129553
CGTATGC77500.020.13553451
TGGTCGC101450.019.79789752
CGTATCA93150.019.66838559
TGCCGTC77650.019.24425355
ATGCCGT78250.018.78305454
GTATGCC84000.018.41205252
GCCGTCT85700.016.6203656
TCGTATG101050.016.23867850
CTCGGTG137600.015.89006847
TCGGTGG138400.015.74795248
GGTGGTC130800.015.54112850
CGTGTAG139050.015.26142725
GAGACCG132900.014.94833240
GGCTGAT113200.014.8208482
ATCAGCC117300.014.3326112