FastQCFastQC Report
Wed 16 Nov 2016
SRR1945607.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945607.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85166944
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG1174970.13796080319613205Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT217650.036.8713151
CGAGATC531000.028.11312118
TATGCCG205150.027.99624363
CCGAGAT544600.027.2630217
CGTATGC234300.025.7714561
GGCATTC304300.024.3520982
GTATGCC243050.024.23828162
CCTGCTG284100.024.0275298
GAGACCG403950.023.8615950
CGAGACC408050.023.39840349
ATGCCGT205950.022.87768664
GGGCGCC85500.022.82791163
TGCCGTC197550.022.71725765
GCATTCC332550.022.6925453
CGCCGTA161050.022.65666456
GCTGAAC288550.022.07768411
GCCGTAT167500.022.06895657
GGTCGCC175650.022.0680353
GACCGAT407600.021.77135752
GAGATCG703900.021.23678219