Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945640.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 57562576 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 416201 | 0.7230409563324616 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 212576 | 0.369295495045253 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 124455 | 0.0 | 53.41041 | 9 |
GCGGTTC | 122965 | 0.0 | 52.679054 | 11 |
AGAGCGG | 133080 | 0.0 | 52.48509 | 8 |
AGCGGTT | 125900 | 0.0 | 52.135834 | 10 |
TATGCCG | 100735 | 0.0 | 51.64598 | 43 |
CGTATGC | 103480 | 0.0 | 50.840187 | 41 |
ATGCCGT | 98655 | 0.0 | 50.733192 | 44 |
GTATGCC | 103365 | 0.0 | 50.591602 | 42 |
TGCCGTC | 97970 | 0.0 | 50.431606 | 45 |
GCCGTCT | 96645 | 0.0 | 50.124302 | 46 |
GAGACCG | 115010 | 0.0 | 49.97102 | 30 |
CGAGACC | 116335 | 0.0 | 49.768677 | 29 |
TCGTATG | 108860 | 0.0 | 48.87749 | 40 |
AATGCCG | 122405 | 0.0 | 48.63691 | 24 |
GACCGAT | 114790 | 0.0 | 48.259937 | 32 |
AGACCGA | 118680 | 0.0 | 48.136234 | 31 |
GTTCAGC | 131700 | 0.0 | 48.07796 | 14 |
CGGTTCA | 135380 | 0.0 | 47.582172 | 12 |
CAGCAGG | 131400 | 0.0 | 47.337284 | 17 |
CCGATAT | 73485 | 0.0 | 47.321125 | 34 |