Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945606.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 155352494 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 37540 | 0.0 | 19.517582 | 1 |
CCTGCTG | 55730 | 0.0 | 13.009543 | 8 |
GGCATTC | 58965 | 0.0 | 12.893597 | 2 |
GCATTCC | 68815 | 0.0 | 11.293866 | 3 |
ATTCCTG | 67870 | 0.0 | 11.127066 | 5 |
TTCCTGC | 74930 | 0.0 | 10.058517 | 6 |
CGAGATC | 75070 | 0.0 | 9.210927 | 18-19 |
CAGCAGG | 79080 | 0.0 | 9.037491 | 6 |
CTGCTGA | 82980 | 0.0 | 9.020494 | 9 |
GTTCAGC | 77860 | 0.0 | 9.009048 | 3 |
TCCTGCT | 89390 | 0.0 | 8.594305 | 7 |
GGCTGAT | 51345 | 0.0 | 8.457277 | 2 |
CGGTTCA | 88475 | 0.0 | 8.095046 | 1 |
CAGGAAT | 89210 | 0.0 | 8.021847 | 9 |
CCGAGAT | 90135 | 0.0 | 7.9398518 | 16-17 |
ATCAGCC | 55050 | 0.0 | 7.87099 | 2 |
GCAGGAA | 97005 | 0.0 | 7.52735 | 8 |
CGCCGTA | 31145 | 0.0 | 7.515555 | 56-57 |
GGTTCAG | 96865 | 0.0 | 7.431074 | 2 |
GGTCGCC | 36465 | 0.0 | 7.2438965 | 62-63 |