FastQCFastQC Report
Wed 16 Nov 2016
SRR1945573.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945573.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36307552
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG188350.016.6543125
GTCGCGC14350.015.9261728
TATACCG114050.014.9700765
CTATACT202450.014.8303274
CATACAC907100.014.0447963
TATACAG181400.013.8586185
TCTATAC237750.013.7215963
ACACATG937900.013.268256
ACATGAC746600.013.1926748
CACATGA918700.012.769987
GTATAGG131000.012.672541
GTATATA570900.012.6504081
CATGACA766600.012.5679029
GTGTATG843200.012.4284591
TCATACA1000100.012.4148872
GAGCGCG19350.012.2740887
ATACTGT185900.012.2455616
ATCATAC1018600.012.0103561
CTAGTAC120900.011.972093
GTATAGA254900.011.9020261