Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945649.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 57891500 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 551912 | 0.9533558467132481 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 184287 | 0.31833170672723976 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG | 70540 | 0.12184863062798511 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGGTTC | 190240 | 0.0 | 56.70558 | 11 |
GAGCGGT | 194345 | 0.0 | 56.50292 | 9 |
AGCGGTT | 193480 | 0.0 | 56.054447 | 10 |
TATGCCG | 119245 | 0.0 | 55.268673 | 43 |
AATGCCG | 181200 | 0.0 | 54.75637 | 24 |
CGTATGC | 123160 | 0.0 | 54.73424 | 41 |
GAGACCG | 173930 | 0.0 | 54.58284 | 30 |
CGAGACC | 175605 | 0.0 | 54.531998 | 29 |
AGAGCGG | 205085 | 0.0 | 54.378925 | 8 |
GTATGCC | 123075 | 0.0 | 54.28655 | 42 |
ATGCCGT | 102995 | 0.0 | 54.070763 | 44 |
GTTCAGC | 195255 | 0.0 | 54.050232 | 14 |
TGCCGTC | 99170 | 0.0 | 53.977512 | 45 |
CAGCAGG | 193060 | 0.0 | 53.824074 | 17 |
GACCGAT | 168680 | 0.0 | 53.737194 | 32 |
TGCCGAG | 183220 | 0.0 | 53.627132 | 26 |
AGACCGA | 176630 | 0.0 | 53.468895 | 31 |
CGGTTCA | 200665 | 0.0 | 53.357086 | 12 |
CCGATAT | 119015 | 0.0 | 53.33803 | 34 |
ATGCCGA | 185810 | 0.0 | 53.212788 | 25 |