Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945473.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 47595490 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 15775 | 0.0 | 13.167994 | 5 |
TATACTG | 23750 | 0.0 | 12.011349 | 5 |
CTATACT | 24920 | 0.0 | 11.824592 | 4 |
TCTATAC | 30655 | 0.0 | 11.574768 | 3 |
GTACTAG | 20745 | 0.0 | 11.178782 | 1 |
ATACCGT | 14130 | 0.0 | 11.009117 | 6 |
CCGTGAG | 12875 | 0.0 | 10.950969 | 9 |
ACCGTGA | 14990 | 0.0 | 10.879322 | 8 |
CATACAC | 132485 | 0.0 | 10.659687 | 3 |
TACCGTG | 12130 | 0.0 | 10.577147 | 7 |
CTAGTAC | 16725 | 0.0 | 10.368763 | 3 |
ACATGAC | 106090 | 0.0 | 10.3661 | 8 |
ACACATG | 134790 | 0.0 | 10.341419 | 6 |
GTATATA | 73520 | 0.0 | 10.249864 | 1 |
GTATAGA | 32680 | 0.0 | 10.090136 | 1 |
CACATGA | 131380 | 0.0 | 10.055375 | 7 |
CATGACA | 109340 | 0.0 | 9.929135 | 9 |
GTGTATG | 125545 | 0.0 | 9.726718 | 1 |
TATACAG | 22175 | 0.0 | 9.685437 | 5 |
TAGTACT | 30830 | 0.0 | 9.6798115 | 4 |