Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945550.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25488816 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATACT | 14350 | 0.0 | 14.58137 | 4 |
TATACCG | 8990 | 0.0 | 14.069635 | 5 |
TATACTG | 13420 | 0.0 | 13.910035 | 5 |
TCTATAC | 17930 | 0.0 | 13.768623 | 3 |
GTATAGG | 9490 | 0.0 | 12.49506 | 1 |
TAGACCG | 5890 | 0.0 | 11.974743 | 5 |
CCGTGAG | 6365 | 0.0 | 11.963813 | 9 |
TATACAG | 14580 | 0.0 | 11.9003315 | 5 |
TACCGTG | 6820 | 0.0 | 11.717789 | 7 |
AGACCGT | 5910 | 0.0 | 11.613056 | 6 |
ATACCGT | 9655 | 0.0 | 11.490551 | 6 |
ACCGTGA | 8810 | 0.0 | 11.41865 | 8 |
CTAGTAC | 8335 | 0.0 | 11.283295 | 3 |
TAATACT | 25060 | 0.0 | 11.164162 | 4 |
CTATACC | 12275 | 0.0 | 11.070483 | 4 |
GTATAGA | 18490 | 0.0 | 10.993876 | 1 |
ATACTGT | 15750 | 0.0 | 10.953846 | 6 |
GACCGTG | 4590 | 0.0 | 10.856112 | 7 |
TACACTG | 7535 | 0.0 | 10.733354 | 5 |
CATACAC | 52460 | 0.0 | 10.702558 | 3 |