Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945485.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 70802668 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 14445 | 0.0 | 22.39571 | 1 |
CCTGCTG | 23110 | 0.0 | 19.781755 | 8 |
CGGCATA | 9570 | 0.0 | 19.212782 | 12 |
GCTGAAC | 24425 | 0.0 | 19.163279 | 11 |
GGCATTC | 22980 | 0.0 | 19.046577 | 2 |
GCATTCC | 25240 | 0.0 | 18.244923 | 3 |
ACCGCTC | 17820 | 0.0 | 18.220972 | 16 |
TATGCCG | 12990 | 0.0 | 17.738722 | 3 |
GAACCGC | 18995 | 0.0 | 17.555897 | 14 |
ATTCCTG | 27470 | 0.0 | 16.995228 | 5 |
CCGCTCT | 19160 | 0.0 | 16.890402 | 17 |
ATGCCGT | 14125 | 0.0 | 16.437845 | 4 |
TGAACCG | 28895 | 0.0 | 16.379826 | 13 |
GCATACG | 11320 | 0.0 | 16.02636 | 14 |
GACGGCA | 11570 | 0.0 | 15.86169 | 10 |
AACCGCT | 21020 | 0.0 | 15.8312025 | 15 |
ACGGCAT | 11685 | 0.0 | 15.615849 | 11 |
TTCCTGC | 30255 | 0.0 | 15.524038 | 6 |
TGCCGTC | 15005 | 0.0 | 15.428403 | 5 |
CGTATGC | 15215 | 0.0 | 15.404797 | 1 |