FastQCFastQC Report
Wed 16 Nov 2016
SRR1945614.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945614.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences178392794
Sequences flagged as poor quality0
Sequence length100
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT966250.011.6576629
AGAGCGG1135900.011.2652478
TATGCCG462200.010.28496542-43
TGCCGTC455300.09.89375244-45
CGTATGC525150.09.11474640-41
ATGCCGT476550.08.96934644-45
AAGAGCG1875800.08.4878887
GTATGCC547950.08.34523942-43
GCCGTCT511550.08.3097246-47
TCGGAAG2039700.08.1552793
ATCGGAA2303900.07.4979342
CGAGACC753650.07.460953728-29
GAGACCG719400.07.440535530-31
CGGAAGA2279700.07.41606764
CGGCATT372850.07.3936831
GATCGGA2367100.07.31809431
AATGCCG747050.07.158824424-25
TGCCGAG771450.07.03294426-27
ATGCCGA822600.06.864109524-25
GACCGAT742300.06.75519132-33