FastQCFastQC Report
Wed 16 Nov 2016
SRR1945723.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945723.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32238474
Sequences flagged as poor quality0
Sequence length76
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT58550.013.8544271
GGTCGCC40900.013.17868563
TATGCCG40800.012.78205863
CGCCGTA43950.012.3416566
GCCGTAT45900.012.12427367
GCTGAAC98350.011.83750711
CCTGCTG97750.011.7667378
ATGCCGT47800.011.71296564
TGGTCGC52850.010.86222362
GGCATTC104550.010.4647252
CGTATGC52000.010.30001161
TGCCGTC53150.010.07367465
ATTCCTG117150.09.9972865
GCATTCC112700.09.9558533
CCGTATC57350.09.8869868
GCCGTCT57100.09.62196966
TGAACCG118250.09.58054513
CGAGATC130800.09.43726918
GTATGCC56700.09.38383662
TTCCTGC127350.09.30656