FastQCFastQC Report
Wed 16 Nov 2016
SRR1945564.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945564.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76758642
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC779820.10159377233380444No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG379150.015.88495355
TATACCG250850.015.5597215
CTAGTAC263350.014.1405223
TCTATAC482200.013.9864353
CATACAC2248500.013.7755383
CTATACT398450.013.6871954
ACATGAC1874150.013.4378488
TACCGTG190450.013.3884197
ACACATG2300400.013.2641076
GTATAGA531850.013.2495111
CCGTGAG199150.013.2085459
ATACCGT227700.013.2055826
TATACAG369650.013.0321325
CACATGA2254450.012.9202457
CATGACA1938350.012.8956579
GTGTATG2092350.012.6032991
TCATACA2448450.012.5369822
ACCGTGA260450.012.1988718
TAGACCG188400.012.1783045
ATCATAC2492900.012.0804521