FastQCFastQC Report
Wed 16 Nov 2016
SRR1945440.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945440.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43104458
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG139950.016.5651745
TATACTG223000.015.4765125
TCTATAC280050.014.9537483
CCGTGAG103700.014.637429
TACCGTG98650.014.5247917
CTATACT231600.014.4450724
ATACCGT122600.014.3665076
CATACAC1334850.014.3138363
ACATGAC1136050.014.0884328
GTGTATG1168350.013.7920071
CTAGTAC144900.013.6295863
ACACATG1319700.013.5953656
CATGACA1164550.013.5670949
TATGAGC180750.013.479238594
ACCGTGA136800.013.4782928
CACATGA1263300.013.2226157
TATACAG212950.013.0549485
TCATACA1459700.012.8071792
TAGACCG94450.012.7010175
GATTGAG1110200.012.5848297