FastQCFastQC Report
Wed 16 Nov 2016
SRR1945742.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945742.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36248582
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG178900.014.7379855
CATACAC1034650.014.369383
TATACCG109350.013.8775885
ACATGAC806600.013.8120148
CTATACT196400.013.721874
TATACAG181450.013.6180585
ACACATG1038400.013.4076246
CATGACA836900.013.0986799
ATCATAC1084050.013.0972341
TCATACA1117950.013.0853432
CACATGA1004750.012.9881117
GTATATA519350.012.9776321
TCTATAC221000.012.6415873
GTGTATG905950.012.5111821
GTATAGA233200.012.1609271
TACACAT1319300.011.9503025
GTATTAT297450.011.6700291
TAGGCTG97200.011.6516485
TATATAC538200.011.533683
TATACTA343850.011.5214565