Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945484.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 54823072 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 10385 | 0.0 | 25.096432 | 1 |
ACCGCTC | 12635 | 0.0 | 23.4381 | 16 |
GCTGAAC | 18205 | 0.0 | 22.279924 | 11 |
CCGCTCT | 13600 | 0.0 | 21.695982 | 17 |
GAACCGC | 14250 | 0.0 | 21.175632 | 14 |
CCTGCTG | 19625 | 0.0 | 20.987381 | 8 |
AACCGCT | 15615 | 0.0 | 19.415144 | 15 |
GGCATTC | 20280 | 0.0 | 19.32028 | 2 |
ATTCCTG | 21055 | 0.0 | 19.309793 | 5 |
TGAACCG | 21305 | 0.0 | 18.988451 | 13 |
GCATTCC | 21830 | 0.0 | 18.573557 | 3 |
TTCCTGC | 23160 | 0.0 | 17.751352 | 6 |
CTTCCGA | 17240 | 0.0 | 17.197924 | 22 |
CTGAACC | 24015 | 0.0 | 17.15151 | 12 |
CGCTCTT | 18250 | 0.0 | 16.221905 | 18 |
CGATCAG | 14850 | 0.0 | 15.973827 | 26 |
CGCCGTA | 6335 | 0.0 | 15.70874 | 66 |
CGTGTAG | 15525 | 0.0 | 15.26352 | 46 |
CTGCTGA | 27985 | 0.0 | 15.055991 | 9 |
GAGACCG | 16345 | 0.0 | 14.66342 | 61 |