Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945642.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 136439128 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 34435 | 0.0 | 24.54377 | 1 |
CCTGCTG | 43410 | 0.0 | 18.836777 | 8 |
GGCATTC | 50005 | 0.0 | 17.2868 | 2 |
GCATTCC | 51540 | 0.0 | 16.823912 | 3 |
ATTCCTG | 63560 | 0.0 | 13.692277 | 5 |
TTCCTGC | 67660 | 0.0 | 12.771248 | 6 |
CCGAGAT | 62000 | 0.0 | 12.294457 | 16-17 |
GGCTGAT | 47325 | 0.0 | 11.706774 | 2 |
CTGCTGA | 71645 | 0.0 | 11.695323 | 9 |
ATCAGCC | 50235 | 0.0 | 11.225232 | 2 |
TCCTGCT | 79360 | 0.0 | 11.1090975 | 7 |
CGCCGTA | 27240 | 0.0 | 10.681674 | 56-57 |
CGAGATC | 75595 | 0.0 | 10.260686 | 18-19 |
GGTCGCC | 29280 | 0.0 | 10.097718 | 52-53 |
CATTCCT | 94310 | 0.0 | 9.498083 | 4 |
CAGCCAA | 76170 | 0.0 | 9.154949 | 4 |
GTCGCCG | 33265 | 0.0 | 9.0508585 | 54-55 |
TGGCTGA | 63680 | 0.0 | 9.050139 | 1 |
GCCAAGA | 78425 | 0.0 | 8.96914 | 6 |
CAGCAGG | 90965 | 0.0 | 8.765791 | 6 |