Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945688.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 45972228 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 6365 | 0.0 | 21.641256 | 63 |
GAGACCG | 12495 | 0.0 | 20.072868 | 50 |
CGTATGC | 7360 | 0.0 | 19.744799 | 61 |
CGAGACC | 13015 | 0.0 | 19.485243 | 49 |
GTATGCC | 7710 | 0.0 | 18.478168 | 62 |
CGAGATC | 18095 | 0.0 | 18.103262 | 18 |
AATGCCG | 16045 | 0.0 | 17.898802 | 13 |
GAGCGGT | 14830 | 0.0 | 17.25872 | 29 |
ATGCCGT | 6500 | 0.0 | 17.078985 | 64 |
AGAGCGG | 17295 | 0.0 | 16.66862 | 28 |
GCGGTTC | 15365 | 0.0 | 16.478064 | 31 |
TGCCGAG | 17295 | 0.0 | 16.369043 | 15 |
AGACCGA | 15885 | 0.0 | 15.759656 | 51 |
GACCGAT | 14195 | 0.0 | 15.4991045 | 52 |
AGCGGTT | 17125 | 0.0 | 15.400121 | 30 |
CCGAGAT | 21520 | 0.0 | 15.23458 | 17 |
TGCCGTC | 6665 | 0.0 | 15.154383 | 65 |
ATGCCGA | 19405 | 0.0 | 14.657914 | 14 |
GAATGCC | 20760 | 0.0 | 13.8735485 | 12 |
GCCGAGA | 20915 | 0.0 | 13.557812 | 16 |