Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945696.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 58836244 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 124175 | 0.211051881557905 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 21875 | 0.0 | 43.94922 | 1 |
GCTGAAC | 26480 | 0.0 | 32.650528 | 11 |
CCTGCTG | 27950 | 0.0 | 32.60574 | 8 |
ATTCCTG | 29350 | 0.0 | 31.531982 | 5 |
CCGAGAT | 56620 | 0.0 | 30.401728 | 17 |
GGCATTC | 30730 | 0.0 | 30.023659 | 2 |
CGAGATC | 57665 | 0.0 | 29.676346 | 18 |
AACCGAG | 25440 | 0.0 | 29.476933 | 15 |
TGAACCG | 28400 | 0.0 | 29.396843 | 13 |
GCATTCC | 32280 | 0.0 | 29.05906 | 3 |
TTCCTGC | 33110 | 0.0 | 28.285587 | 6 |
TATGCCG | 24895 | 0.0 | 27.761703 | 63 |
CTGAACC | 32290 | 0.0 | 27.65567 | 12 |
CGCCGTA | 22145 | 0.0 | 27.234503 | 56 |
GGGCGCC | 10255 | 0.0 | 27.067045 | 63 |
GAACCGA | 27430 | 0.0 | 26.610641 | 14 |
GCCGTAT | 23150 | 0.0 | 26.192451 | 57 |
TCCTGCT | 37295 | 0.0 | 25.482306 | 7 |
GGTCGCC | 25090 | 0.0 | 25.161041 | 53 |
ATGCCGT | 24670 | 0.0 | 24.921087 | 64 |