FastQCFastQC Report
Wed 16 Nov 2016
SRR1945670.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945670.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56932286
Sequences flagged as poor quality0
Sequence length76
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGACCG148100.013.3430150
CGAGACC164600.012.13182849
GACCGAT142550.011.9005852
AATGCCG178550.011.88336213
TGCCGAG184350.011.45282615
ATGCCGA197850.010.84755214
CCGAGAT231000.010.51746717
AGACCGA184350.010.32129351
GCGGTTC196750.010.061131531
GAGCGGT206900.09.88787929
CCGAGAC204150.09.88374648
GCCGAGA226450.09.66332616
TATGCCG70850.09.28054463
CGAGATC270850.09.16384618
GAATGCC237050.09.14265212
AGCGGTT226350.08.97686730
AGAGCGG254100.08.97296128
CAGCAGG258450.08.5217326
GGAATGC266400.08.29330611
GTTCAGC261000.07.921269434