Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945552.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34316766 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12150 | 0.0 | 12.809392 | 5 |
TATACTG | 17210 | 0.0 | 12.212469 | 5 |
CTATACT | 16555 | 0.0 | 12.042412 | 4 |
TCTATAC | 21795 | 0.0 | 11.952415 | 3 |
TATACAG | 15455 | 0.0 | 11.62174 | 5 |
GTCGCGC | 1985 | 0.0 | 11.129869 | 8 |
CATACAC | 133545 | 0.0 | 11.066735 | 3 |
ACATGAC | 102010 | 0.0 | 11.036097 | 8 |
GTATATA | 49840 | 0.0 | 10.923268 | 1 |
GTATAGG | 12370 | 0.0 | 10.841077 | 1 |
ACACATG | 137350 | 0.0 | 10.835324 | 6 |
CCGTGAG | 9715 | 0.0 | 10.789285 | 9 |
CACATGA | 135600 | 0.0 | 10.597304 | 7 |
CATGACA | 105815 | 0.0 | 10.580961 | 9 |
GTATAGA | 21685 | 0.0 | 10.502271 | 1 |
TACCGTG | 9710 | 0.0 | 10.408278 | 7 |
GTATTAG | 19495 | 0.0 | 10.402825 | 1 |
CTAGTAC | 11100 | 0.0 | 10.37877 | 3 |
GCCGTGC | 3315 | 0.0 | 10.351233 | 8 |
GTACTAG | 14455 | 0.0 | 10.221364 | 1 |