FastQCFastQC Report
Wed 16 Nov 2016
SRR1945745.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945745.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79816412
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG775550.019.4979384
AGAGCGT409200.019.0465099
CGGAAGA885300.017.2171545
GATCGGA889200.017.1636562
AAGAGCG471450.016.9375218
ATCGGAA943500.016.274453
GGTCGCC246250.015.2910544-45
GAAGAGC1038350.014.8916217
CGTCCGC240400.014.28465534-35
CGCCGTA253900.014.26584146-47
AGAGCAC536400.013.9740529
TGGTCGC277500.013.39933142-43
GTCCGCA256850.013.106750534-35
GAGCGTC318400.012.5681910-11
CCGCACA264400.012.53260436-37
ACGTCCG271100.012.52659632-33
TCCGCAC280700.012.25344836-37
TATGCCG245400.012.23158148-49
GGAAGAG1299400.012.1654666
TGCCGTC244500.012.08073150-51