FastQCFastQC Report
Wed 16 Nov 2016
SRR1945508.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945508.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63121436
Sequences flagged as poor quality0
Sequence length40-101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG365000.016.4234374
AGAGCGT198500.015.1020399
GGTCGCC86550.014.34921244-45
CGGAAGA470300.012.910595
GATCGGA475450.012.818892
CGCCGTA97350.012.6733946-47
AAGAGCG244900.012.2780068
ATCGGAA516400.011.9784153
GAGCGTC131950.011.35937110-11
GCACACG136100.011.28038512-13
GAAGAGC577300.010.8189167
AGAGCAC289950.010.7310879
AGCGTCG137600.010.72764910-11
GTCACGG130550.010.66262730-31
GCGTCGT142550.010.45086812-13
CACGGCT134850.010.3940632-33
AGTCACG145550.010.3130528-29
TGGTCGC110500.010.26781542-43
TGCCGTC97150.010.25736348-49
TATGCCG103950.010.16977946-47