Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945474.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 29153504 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 15055 | 0.0 | 13.641519 | 5 |
CTATACT | 15625 | 0.0 | 12.993489 | 4 |
TCTATAC | 19835 | 0.0 | 11.870481 | 3 |
TATACCG | 10210 | 0.0 | 11.829583 | 5 |
GTATTAG | 20395 | 0.0 | 11.532479 | 1 |
GTATAGA | 21055 | 0.0 | 11.394396 | 1 |
CTAGTAC | 9485 | 0.0 | 10.900543 | 3 |
GTATATA | 43085 | 0.0 | 10.808998 | 1 |
ACCGTGC | 4045 | 0.0 | 10.805153 | 8 |
TATACAG | 16395 | 0.0 | 10.749342 | 5 |
CCGTGAG | 6265 | 0.0 | 10.727282 | 9 |
CTATACC | 13570 | 0.0 | 10.66677 | 4 |
TACCGTG | 7935 | 0.0 | 10.660747 | 7 |
GTACTAG | 11750 | 0.0 | 10.649278 | 1 |
ATACTGT | 16870 | 0.0 | 10.585968 | 6 |
CATACAC | 67555 | 0.0 | 10.567276 | 3 |
TAGTACT | 17485 | 0.0 | 10.428651 | 4 |
TAATACT | 27190 | 0.0 | 10.180476 | 4 |
ATACCGT | 10910 | 0.0 | 10.165981 | 6 |
ACACATG | 67620 | 0.0 | 10.140099 | 6 |