Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945758.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 73702972 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 11290 | 0.0 | 8.364852 | 48-49 |
GCCGTCT | 12430 | 0.0 | 7.501019 | 48-49 |
GAGCACA | 30190 | 0.0 | 7.0783186 | 9 |
TATGCCG | 14335 | 0.0 | 6.962184 | 46-47 |
ATGCCGT | 13405 | 0.0 | 6.841055 | 46-47 |
TCGGAAG | 34545 | 0.0 | 6.8069644 | 3 |
GCACACG | 15695 | 0.0 | 6.389973 | 10-11 |
AGAGCAC | 33630 | 0.0 | 6.143603 | 8 |
GTATGCC | 16210 | 0.0 | 6.1246724 | 44-45 |
CGTATGC | 17065 | 0.0 | 5.9299617 | 44-45 |
CACAGTG | 19260 | 0.0 | 5.133508 | 32-33 |
GATCGGA | 42440 | 0.0 | 5.0956492 | 1 |
CACACGT | 20460 | 0.0 | 5.0937624 | 12-13 |
CGGAAGA | 50770 | 0.0 | 5.0405316 | 4 |