Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945722.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19095420 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 3645 | 0.0 | 22.00478 | 1 |
TATGCCG | 2690 | 0.0 | 19.528917 | 63 |
GCCGTAT | 2905 | 0.0 | 19.165373 | 67 |
CGCCGTA | 3015 | 0.0 | 18.698368 | 66 |
CGTATGC | 3170 | 0.0 | 17.234415 | 61 |
GGTCGCC | 3475 | 0.0 | 16.629086 | 63 |
GCTGAAC | 5730 | 0.0 | 16.362682 | 11 |
ATGCCGT | 3085 | 0.0 | 16.003935 | 64 |
CCGTATC | 3685 | 0.0 | 15.298784 | 68 |
TGCCGTC | 3280 | 0.0 | 15.051178 | 65 |
GTATGCC | 3560 | 0.0 | 14.954292 | 62 |
GCCGTCT | 3430 | 0.0 | 14.700546 | 66 |
GGCATTC | 6625 | 0.0 | 14.639683 | 2 |
CCTGCTG | 6310 | 0.0 | 14.634591 | 8 |
ATTCCTG | 6430 | 0.0 | 14.430854 | 5 |
TGGTCGC | 4260 | 0.0 | 13.976924 | 62 |
CGAGATC | 8800 | 0.0 | 13.914283 | 18 |
TGAACCG | 7005 | 0.0 | 13.386291 | 13 |
TTCCTGC | 7095 | 0.0 | 13.276419 | 6 |
CCGAGAT | 10050 | 0.0 | 12.741053 | 17 |