Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945655.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 58917376 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 484486 | 0.8223142863660459 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 186380 | 0.31634131160220036 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG | 86266 | 0.14641860492904504 | Illumina Paired End PCR Primer 2 (97% over 49bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGGTTC | 210610 | 0.0 | 57.165398 | 11 |
GAGCGGT | 213860 | 0.0 | 57.08208 | 9 |
AGCGGTT | 213370 | 0.0 | 56.740433 | 10 |
TATGCCG | 116765 | 0.0 | 55.969433 | 43 |
CGTATGC | 121300 | 0.0 | 55.559822 | 41 |
AATGCCG | 200525 | 0.0 | 55.112476 | 24 |
GTATGCC | 120920 | 0.0 | 55.099487 | 42 |
GAGACCG | 192380 | 0.0 | 54.92159 | 30 |
CGAGACC | 194940 | 0.0 | 54.724407 | 29 |
ATGCCGT | 95725 | 0.0 | 54.683674 | 44 |
GTTCAGC | 215535 | 0.0 | 54.632275 | 14 |
AGAGCGG | 226085 | 0.0 | 54.565372 | 8 |
CGGTTCA | 221670 | 0.0 | 53.99265 | 12 |
CAGCAGG | 214605 | 0.0 | 53.93662 | 17 |
TGCCGTC | 90755 | 0.0 | 53.90675 | 45 |
GGTTCAG | 222265 | 0.0 | 53.64282 | 13 |
CCGATAT | 124805 | 0.0 | 53.539326 | 34 |
AGACCGA | 195980 | 0.0 | 53.49306 | 31 |
TCGTATG | 137335 | 0.0 | 53.48092 | 40 |
GACCGAT | 188115 | 0.0 | 53.42068 | 32 |