FastQCFastQC Report
Wed 16 Nov 2016
SRR1945744.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945744.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73652416
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG957450.036.6793144
AGAGCGT515200.035.8365029
CGGAAGA1075250.032.6909985
GATCGGA1084150.032.521442
AAGAGCG583650.032.4909328
ATCGGAA1134950.031.146343
AGAGCAC627400.028.9398699
GAAGAGC1217750.028.9119287
AGATCGG1434300.026.0275021
GGTCGCC344600.025.77123844-45
CGCCGTA353300.024.7140346-47
GGAAGAG1481700.023.968756
TGGTCGC371450.023.40449342-43
TATGCCG313550.023.30399946-47
TGCCGTC306200.023.25591548-49
GCCGTCT313850.022.41715250-51
ATGCCGT319350.022.18116848-49
GAGCGTC428650.021.75578510-11
GCCGTAT405550.021.69194648-49
CGTATGC351800.021.43103844-45