FastQCFastQC Report
Wed 16 Nov 2016
SRR1945729.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945729.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences181135816
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG2211730.12210340554625597Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATGCCG1321450.040.80335624
GAGCGGT1649300.039.610849
GCGGTTC1647150.038.98800711
AGCGGTT1693850.038.48795710
AGAGCGG1767300.037.4609268
GTTCAGC1694350.037.39153314
CAGCAGG1697100.037.1779917
TGCCGAG1358050.035.3160226
ATGCCGA1435900.034.6731125
GAATGCC1593650.034.57890323
CGGTTCA1861900.034.49505612
GGTTCAG1891500.033.88257613
CAGGAAT1712750.033.5632320
GGAATGC1694300.032.96067422
GCAGGAA1832900.032.45641319
AAGAGCG2149700.031.7949947
TCAGCAG2053900.030.99017116
AGCAGGA1953600.030.95742418
TCGGAAG2264200.030.3477823
TTCAGCA2213200.028.80037715