Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945515.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30401250 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 15460 | 0.0 | 11.977157 | 5 |
TATACCG | 8605 | 0.0 | 11.305413 | 5 |
CTATACT | 16250 | 0.0 | 10.989988 | 4 |
GTATATA | 43150 | 0.0 | 10.473481 | 1 |
TCTATAC | 18885 | 0.0 | 10.203677 | 3 |
ACATGAC | 69980 | 0.0 | 10.093805 | 8 |
CATACAC | 89250 | 0.0 | 10.037013 | 3 |
CATGACA | 70700 | 0.0 | 9.937962 | 9 |
ACACATG | 88605 | 0.0 | 9.6587 | 6 |
GTATAGA | 19490 | 0.0 | 9.651542 | 1 |
ACTGTGC | 4650 | 0.0 | 9.500462 | 8 |
CACATGA | 85665 | 0.0 | 9.441575 | 7 |
TCATACA | 96470 | 0.0 | 9.183938 | 2 |
TATACAG | 13615 | 0.0 | 9.147349 | 5 |
GTGTATG | 84035 | 0.0 | 9.138492 | 1 |
ATCATAC | 94455 | 0.0 | 9.061392 | 1 |
TATAGTG | 14875 | 0.0 | 9.035996 | 5 |
GTATTAG | 18260 | 0.0 | 9.013963 | 1 |
TATATAC | 42935 | 0.0 | 8.877674 | 3 |
GTGCTAG | 4715 | 0.0 | 8.876807 | 1 |