Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945599.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39389668 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 13235 | 0.0 | 16.337694 | 5 |
TATACTG | 21450 | 0.0 | 15.694884 | 5 |
TCTATAC | 27515 | 0.0 | 14.806774 | 3 |
TATACAG | 19720 | 0.0 | 14.733482 | 5 |
CATACAC | 112800 | 0.0 | 14.705944 | 3 |
CTATACT | 22210 | 0.0 | 14.48062 | 4 |
ATACCGT | 11955 | 0.0 | 14.263086 | 6 |
TACCGTG | 9635 | 0.0 | 14.074373 | 7 |
ACACATG | 112695 | 0.0 | 13.923403 | 6 |
ACATGAC | 84485 | 0.0 | 13.621334 | 8 |
GTGTATG | 97745 | 0.0 | 13.5370035 | 1 |
TCATACA | 121860 | 0.0 | 13.506107 | 2 |
CATGACA | 84935 | 0.0 | 13.375483 | 9 |
GTATAGA | 29255 | 0.0 | 13.205548 | 1 |
ATCATAC | 121705 | 0.0 | 13.173349 | 1 |
CACATGA | 109965 | 0.0 | 13.076586 | 7 |
CCGTGAG | 8480 | 0.0 | 12.688342 | 9 |
TACACAT | 135295 | 0.0 | 12.431602 | 5 |
TAGGCTG | 11070 | 0.0 | 12.415334 | 5 |
GTATATA | 59525 | 0.0 | 12.238635 | 1 |