FastQCFastQC Report
Wed 16 Nov 2016
SRR1945477.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945477.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48325484
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT138650.037.1120641
CCTGCTG214150.033.3908468
GCTGAAC222050.032.17115411
GGTCGCC95600.031.07890763
GGCATTC224850.031.073372
GCATTCC229950.031.0692213
ATTCCTG246850.029.4713255
CGCCGTA101100.029.04178866
TGAACCG250200.028.60920113
GCCGTAT103850.028.54852967
ACCGCTC138750.028.19568316
GAACCGC148600.027.34462214
TTCCTGC271100.026.8096496
CTGAACC273650.026.2216912
CCGCTCT149600.026.03197717
TGGTCGC118650.025.09983462
CCGTATC118900.024.96498968
TATGCCG102100.024.87940863
CTGCTGA293800.024.6841499
AACCGCT165200.024.00387415