FastQCFastQC Report
Wed 16 Nov 2016
SRR1945438.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945438.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41458266
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG129000.016.0878225
TATACTG212900.015.6055925
TCTATAC266750.014.8418163
CATACAC1247950.014.5467343
CTATACT227700.014.5450214
TATGAGC172900.014.39993194
ACATGAC987100.013.7089978
ACACATG1242700.013.6780456
TAGGCTG111050.013.41615
GTGTATG1137900.013.317941
TCATACA1359150.013.296562
TATACAG205550.013.1995115
CATGACA1018050.013.0727179
ATCATAC1333950.013.0613191
CACATGA1205700.013.0318697
GTATAGA282750.012.8074941
TAATACT324600.012.7244614
CTAGTAC125800.012.7094513
GTATATA648500.012.6393451
GTATTAG224950.012.5959391