Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945621.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31771284 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 36 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 35763 | 0.11256391148686343 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGAG | 21400 | 0.0 | 48.041626 | 26 |
CCGAGAC | 21820 | 0.0 | 46.344078 | 28 |
AATGCCG | 23340 | 0.0 | 46.284775 | 24 |
CGAGACC | 21455 | 0.0 | 46.227375 | 29 |
ATGCCGA | 22835 | 0.0 | 45.94155 | 25 |
GCCGAGA | 22335 | 0.0 | 45.764538 | 27 |
GAGCGGT | 29405 | 0.0 | 45.539783 | 9 |
GAGACCG | 21230 | 0.0 | 45.49223 | 30 |
CAGCAGG | 26555 | 0.0 | 45.47947 | 17 |
GACCGAT | 19960 | 0.0 | 43.92744 | 32 |
GCGGTTC | 29885 | 0.0 | 43.63915 | 11 |
AGAGCGG | 31745 | 0.0 | 43.06357 | 8 |
AGCGGTT | 30845 | 0.0 | 42.90744 | 10 |
GAATGCC | 26010 | 0.0 | 42.569714 | 23 |
TATGCCG | 15485 | 0.0 | 42.182095 | 43 |
TGCCGTC | 13295 | 0.0 | 41.997562 | 45 |
GGAATGC | 27310 | 0.0 | 41.8111 | 22 |
GTTCAGC | 29535 | 0.0 | 41.79555 | 14 |
AGACCGA | 22420 | 0.0 | 41.755283 | 31 |
CGGTTCA | 31120 | 0.0 | 41.642944 | 12 |