FastQCFastQC Report
Wed 16 Nov 2016
SRR1945466.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945466.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18916148
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG147100.07.02257394-95
GCACACG35500.06.622569694-95
GAGCGTC45000.06.385465694-95
AGCGTCG46100.06.336127394-95
GATCGGA223250.06.020667694-95
CGGAAGA174450.05.554038594-95
ATCGGAA193700.05.541515494-95