FastQCFastQC Report
Wed 16 Nov 2016
SRR1945756.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945756.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67945302
Sequences flagged as poor quality0
Sequence length101
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG629850.09.60907994-95
TGCCGTC496750.09.46403794-95
CGTATGC817100.09.45274594-95
CGCCGTA578850.09.45073494-95
GCCGTCT456950.09.44137794-95
GTATGCC729350.09.37248594-95
GGTCGCC821800.09.23110894-95
ATGCCGT569300.09.19637294-95
GTCGCCG810500.09.0990894-95
GCCGTAT559750.09.0266594-95
TCGCCGT712700.08.57294-95
CCGTATC527800.08.45291494-95
TCGTATG977150.08.34912694-95
TGGTCGC904000.07.94522394-95
CGTATCA501650.07.927990494-95
CTCGTAT1005350.07.285963594-95
CCGTCTT538000.07.17166894-95
GTGGTCG1067750.07.007838792-93
TCTCGTA1141900.06.742022592-93
GGTGGTC1145500.06.374634392-93