FastQCFastQC Report
Wed 16 Nov 2016
SRR1945613.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945613.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57501390
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT1818710.31628974534354737Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT610620.1061922155273116Illumina Paired End PCR Primer 2 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG442550.045.2882543
TGCCGTC439800.044.66608445
CGTATGC455300.044.19563741
ATGCCGT453350.043.68251844
GTATGCC460500.043.63027242
GCCGTCT450250.043.4227846
GAGACCG498800.041.52957530
CGAGACC510350.040.8922429
AGAGCGG633450.040.733578
GAGCGGT591550.040.6726889
AATGCCG529500.040.37046424
TCGTATG506900.039.6745140
GACCGAT516550.039.5472232
TGCCGAG537400.039.3050526
GCGGTTC593850.039.19102511
CCGATAT380550.038.78961634
AGACCGA536400.038.67313431
AGCGGTT613100.038.3654910
ATGCCGA555200.038.26675425
GGGCGCC80000.037.87779643