Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945723.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 32238474 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 5855 | 0.0 | 13.854427 | 1 |
GGTCGCC | 4090 | 0.0 | 13.178685 | 63 |
TATGCCG | 4080 | 0.0 | 12.782058 | 63 |
CGCCGTA | 4395 | 0.0 | 12.34165 | 66 |
GCCGTAT | 4590 | 0.0 | 12.124273 | 67 |
GCTGAAC | 9835 | 0.0 | 11.837507 | 11 |
CCTGCTG | 9775 | 0.0 | 11.766737 | 8 |
ATGCCGT | 4780 | 0.0 | 11.712965 | 64 |
TGGTCGC | 5285 | 0.0 | 10.862223 | 62 |
GGCATTC | 10455 | 0.0 | 10.464725 | 2 |
CGTATGC | 5200 | 0.0 | 10.300011 | 61 |
TGCCGTC | 5315 | 0.0 | 10.073674 | 65 |
ATTCCTG | 11715 | 0.0 | 9.997286 | 5 |
GCATTCC | 11270 | 0.0 | 9.955853 | 3 |
CCGTATC | 5735 | 0.0 | 9.88698 | 68 |
GCCGTCT | 5710 | 0.0 | 9.621969 | 66 |
TGAACCG | 11825 | 0.0 | 9.580545 | 13 |
CGAGATC | 13080 | 0.0 | 9.437269 | 18 |
GTATGCC | 5670 | 0.0 | 9.383836 | 62 |
TTCCTGC | 12735 | 0.0 | 9.3065 | 6 |