FastQCFastQC Report
Wed 16 Nov 2016
SRR1945507.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945507.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51390762
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG252600.011.7771035
CATACAC1417400.010.6765663
TATACCG165250.010.6080485
TATACAG234350.010.5885655
CTATACT271250.010.4822324
GTATAGA333650.010.4750271
ACATGAC1134500.010.40189558
GTATATA753600.010.336581
ACACATG1449500.010.2844976
CATGACA1173800.010.0818529
CACATGA1392000.010.0070737
GTACTAG187500.09.8091851
TCATACA1550450.09.6543532
ATACTGT258800.09.5882166
ATCATAC1557750.09.5240441
GTATTAG302400.09.5197841
GTATAGG192550.09.4297741
GTGTATG1345700.09.3959031
GTATTAT404450.09.3740591
TAGGCCG68200.09.3717935