FastQCFastQC Report
Wed 16 Nov 2016
SRR1945547.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945547.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88682172
Sequences flagged as poor quality0
Sequence length40-101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC257450.07.11877694-95
CGTATGC296050.06.380113694-95
TGCCGTC178650.06.13133394-95
TGGTCGC314750.06.051985394-95
GTATGCC277900.06.01810794-95
CGCCGTA223400.05.925853392-93
TATGCCG217450.05.897336594-95
CTCGGTG533000.05.37330794-95
GCCGTCT187950.05.35886894-95
GTCGCCG326850.05.2721294-95
TCGTATG399400.05.204099794-95
GCCGTAT279850.05.18380494-95
CGGCTAC651700.05.161216794-95
TCGGTGG514850.05.0490194-95
ACGGCTA664450.05.041379592-93