FastQCFastQC Report
Wed 16 Nov 2016
SRR1945605.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945605.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132093438
Sequences flagged as poor quality0
Sequence length100
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT292700.020.8687111
GGCATTC490550.013.0089462
CCTGCTG474700.012.6393698
ATTCCTG531350.011.7524965
GCATTCC577450.011.2626753
TTCCTGC615300.010.2097786
TCCTGCT762750.08.309687
CTGCTGA742950.08.2654599
CGCCGTA238950.07.67143966-67
GCCGTAT236050.07.636091766-67
CGAGATC660450.07.302058718-19
GCTGAAC457800.06.80415210-11
TATGCCG273400.06.798252662-63
CATTCCT1126350.06.45004944
GGTCGCC310050.06.312953562-63
ATGCCGT291650.06.235795564-65
CCGAGAT835850.06.08732616-17
CCGTATC322650.05.995278468-69
CGTATGC325350.05.885330760-61
GCCGTCT323150.05.643440266-67