Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945601.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 47217592 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 24290 | 0.0 | 14.65192 | 5 |
TATACCG | 15240 | 0.0 | 14.628485 | 5 |
CATACAC | 142920 | 0.0 | 14.113753 | 3 |
TATACAG | 23590 | 0.0 | 13.9291 | 5 |
CTATACT | 25260 | 0.0 | 13.815931 | 4 |
ACATGAC | 106405 | 0.0 | 13.4536705 | 8 |
ACACATG | 140540 | 0.0 | 13.431842 | 6 |
TCTATAC | 28945 | 0.0 | 13.143238 | 3 |
CACATGA | 137425 | 0.0 | 12.801659 | 7 |
CATGACA | 110870 | 0.0 | 12.765715 | 9 |
TCATACA | 155660 | 0.0 | 12.759209 | 2 |
GTGTATG | 123215 | 0.0 | 12.7225065 | 1 |
ATCATAC | 152705 | 0.0 | 12.524055 | 1 |
TAGGCTG | 12735 | 0.0 | 12.197911 | 5 |
GTATATA | 72365 | 0.0 | 12.156138 | 1 |
CTAGTAC | 15665 | 0.0 | 12.071027 | 3 |
GTATAGA | 29785 | 0.0 | 11.995895 | 1 |
TACACAT | 176045 | 0.0 | 11.918627 | 5 |
GATTGAG | 121540 | 0.0 | 11.875158 | 7 |
ACTGTGC | 7980 | 0.0 | 11.671338 | 8 |