Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945527.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 80234512 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 36 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 20190 | 0.0 | 8.67353 | 94-95 |
TGCCGTC | 16105 | 0.0 | 7.1058173 | 94-95 |
CGTATGC | 26675 | 0.0 | 6.9539995 | 94-95 |
TATGCCG | 19985 | 0.0 | 6.911456 | 94-95 |
TGGTCGC | 25215 | 0.0 | 6.8078046 | 94-95 |
GTATGCC | 24710 | 0.0 | 6.7961497 | 94-95 |
GCCGTCT | 16625 | 0.0 | 6.3072624 | 94-95 |
ATGCCGT | 18695 | 0.0 | 6.2637377 | 94-95 |
GTCGCCG | 27630 | 0.0 | 6.1742396 | 94-95 |
GATCTCG | 92430 | 0.0 | 6.0322237 | 94-95 |
CGCCGTA | 16460 | 0.0 | 5.885426 | 94-95 |
CTCGGTG | 44235 | 0.0 | 5.8720546 | 94-95 |
TCGGTGG | 42025 | 0.0 | 5.6172304 | 94-95 |
CGATCAG | 63285 | 0.0 | 5.5174627 | 94-95 |
GTCACGA | 72940 | 0.0 | 5.2796984 | 94-95 |
AGTCACG | 73750 | 0.0 | 5.2577972 | 94-95 |
TCGTATG | 36690 | 0.0 | 5.193638 | 94-95 |
CTCGTAT | 40860 | 0.0 | 5.1325617 | 94-95 |
CACGATC | 74845 | 0.0 | 5.020861 | 94-95 |