Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945647.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 90861196 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 21045 | 0.0 | 30.911484 | 1 |
CGAGATC | 49800 | 0.0 | 23.186853 | 18 |
CCGAGAT | 52215 | 0.0 | 22.15551 | 17 |
CCTGCTG | 28800 | 0.0 | 20.914997 | 8 |
GGCATTC | 30265 | 0.0 | 20.647566 | 2 |
CGCCGTA | 15405 | 0.0 | 19.466682 | 56 |
TATGCCG | 16180 | 0.0 | 19.464254 | 63 |
GGTCGCC | 17040 | 0.0 | 19.26153 | 53 |
GCATTCC | 33185 | 0.0 | 19.07247 | 3 |
GCTGAAC | 31090 | 0.0 | 18.722946 | 11 |
GCCGTAT | 16575 | 0.0 | 18.06622 | 57 |
GAGACCG | 35650 | 0.0 | 18.059801 | 50 |
ATTCCTG | 34580 | 0.0 | 18.007784 | 5 |
GAGATCG | 65685 | 0.0 | 17.588951 | 19 |
CGAGACC | 36185 | 0.0 | 17.55787 | 49 |
CGTATGC | 19060 | 0.0 | 17.312334 | 61 |
AACCGAG | 29990 | 0.0 | 16.912638 | 15 |
TGAACCG | 34935 | 0.0 | 16.692972 | 13 |
TTCCTGC | 37535 | 0.0 | 16.647152 | 6 |
TGGTCGC | 20300 | 0.0 | 16.358004 | 52 |