FastQCFastQC Report
Wed 16 Nov 2016
SRR1945698.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945698.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51250496
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT4897750.9556492877649418Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT1201600.23445626750617202Illumina Paired End PCR Primer 2 (100% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG523610.1021668161026188Illumina Paired End PCR Primer 2 (97% over 49bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT1813750.063.8834959
GCGGTTC1795400.063.30427611
AGCGGTT1818800.063.02781710
CGGTTCA1810550.062.47196612
AGAGCGG1877550.062.2068148
CAGCAGG1763000.062.0923217
GTTCAGC1797550.061.61156514
GGTTCAG1847950.060.97162213
AATGCCG1697300.060.75314724
TGCCGAG1676200.060.37069726
GAATGCC1738750.059.8916323
ATGCCGA1710650.059.7276925
GGAATGC1776000.059.68136622
TCAGCAG1854250.059.51383216
CAGGAAT1800300.059.4675320
CCGAGAC1681600.059.46389828
GCCGAGA1700300.059.3951627
AGCAGGA1853100.059.1030618
CGAGACC1679800.059.04419329
GCAGGAA1831200.058.977819