Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945676.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 56617872 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGACCG | 11480 | 0.0 | 16.028744 | 50 |
CGAGACC | 11765 | 0.0 | 15.816904 | 49 |
AATGCCG | 13400 | 0.0 | 15.402932 | 13 |
GAGCGGT | 13155 | 0.0 | 14.701283 | 29 |
TGCCGAG | 13980 | 0.0 | 14.568927 | 15 |
AGAGCGG | 14825 | 0.0 | 13.939451 | 28 |
GCGGTTC | 14405 | 0.0 | 13.42683 | 31 |
ATGCCGA | 15740 | 0.0 | 12.979041 | 14 |
GACCGAT | 12240 | 0.0 | 12.637108 | 52 |
TATGCCG | 5040 | 0.0 | 12.467778 | 63 |
AGCGGTT | 16365 | 0.0 | 11.903032 | 30 |
AGACCGA | 14755 | 0.0 | 11.902916 | 51 |
CGAGATC | 18075 | 0.0 | 11.637381 | 18 |
CAGCAGG | 18490 | 0.0 | 11.471123 | 6 |
GAATGCC | 18360 | 0.0 | 11.389715 | 12 |
CCGAGAT | 19230 | 0.0 | 11.15639 | 17 |
GCCGAGA | 18690 | 0.0 | 11.122312 | 16 |
GGAATGC | 20565 | 0.0 | 10.391477 | 11 |
GTTCAGC | 19665 | 0.0 | 9.943767 | 34 |
CGTATGC | 6840 | 0.0 | 9.698591 | 61 |