Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945721.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39583140 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGGGGT | 4575 | 0.0 | 19.750353 | 39 |
TCGGGGG | 6950 | 0.0 | 18.053373 | 38 |
GGGGGTC | 5885 | 0.0 | 17.868607 | 40 |
CGGCATT | 6465 | 0.0 | 17.790684 | 1 |
GGGTCGC | 6120 | 0.0 | 15.922211 | 42 |
CTCGGGG | 5970 | 0.0 | 15.828576 | 37 |
CGGCGCG | 2310 | 0.0 | 14.819114 | 12 |
TATGCCG | 5650 | 0.0 | 14.755279 | 63 |
GCGGCGC | 2875 | 0.0 | 14.536824 | 11 |
GGTCGCC | 6645 | 0.0 | 14.14306 | 43 |
GCCGTAT | 6145 | 0.0 | 13.931064 | 67 |
CGCCGTA | 6460 | 0.0 | 13.854041 | 46 |
AATGCCG | 14480 | 0.0 | 13.632316 | 24 |
GAGACCG | 11545 | 0.0 | 13.399877 | 61 |
CGAGACC | 11285 | 0.0 | 13.39419 | 60 |
TGCCGTC | 6405 | 0.0 | 13.383546 | 65 |
ATGCCGT | 6495 | 0.0 | 13.107591 | 64 |
GGGCGCC | 2785 | 0.0 | 12.778546 | 43 |
GAGCGGT | 16060 | 0.0 | 12.764038 | 9 |
TGGTCGC | 7075 | 0.0 | 12.363648 | 62 |