FastQCFastQC Report
Wed 16 Nov 2016
SRR1945747.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945747.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69136246
Sequences flagged as poor quality0
Sequence length40-101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG1337000.041.5775154
AGAGCGT686600.040.313139
CGGAAGA1429000.038.892875
GATCGGA1442650.038.6528782
ATCGGAA1477000.037.7975273
AAGAGCG741700.037.533158
GAAGAGC1572600.035.4459887
AGAGCAC797900.034.7363859
GGAAGAG1799050.031.1579196
AGATCGG1910100.029.5067331
GGTCGCC487950.026.6922644-45
CGCCGTA489850.025.9266246-47
AAGAGCA1118600.025.1442748
TGGTCGC518600.024.75490242-43
GCCGTAT531000.024.2404348-49
TATGCCG384900.023.85816846-47
TGCCGTC378050.023.30449748-49
CCGTATC545550.023.23696748-49
GCCGTCT381150.023.00943250-51
GAGCGTC608350.022.9017910-11