FastQCFastQC Report
Tue 15 Nov 2016
SRR1946182.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946182.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38914422
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG153550.017.2199635
CCGTGAG152550.015.6091989
TACCGTG133950.015.6026647
ATACCGT146600.015.5697466
CTAGTAC176550.014.1824453
ACCGTGA183900.014.0208138
TCTATAC276050.013.324953
CTATACC216750.013.1779164
GTATAGA304400.012.8779381
CCTAGTA202100.012.2970232
GTACTAC202700.011.8398566
GTACTAG253600.011.3751531
TATACTG190700.011.2794645
TATGAGC180900.011.17960794
TAGTACT375100.010.9087094
CTATACT201450.010.8206414
CATACAC1076300.010.6019513
TAGACCG115700.010.4727335
ACACATG1054950.010.2661296
ACATGAC732650.010.2117888