FastQCFastQC Report
Tue 15 Nov 2016
SRR1946035.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946035.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30257686
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG121050.015.106195
CCGTGAG86650.014.0462099
TACCGTG95100.013.193117
ATACCGT109850.013.0910496
ACCGTGA115400.012.2977068
TCTATAC211200.012.1971043
CTAGTAC109100.012.0212473
GTCGCGC13100.011.4789368
CCGTGCG17800.011.3521069
GCCGTGC31950.011.3251218
GTATAGA235400.011.2682761
TATACTG152500.011.0352785
CTATACC172200.010.7828624
GTACTAG150150.010.7436941
CTATACT156050.010.7239884
GTACTAC126850.010.4474846
GTATAGG109000.010.3986121
TAGTACT218700.010.3387124
CATACAC877400.010.2544983
GTATTAG186650.010.1797751