FastQCFastQC Report
Tue 15 Nov 2016
SRR1946114.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946114.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40782058
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG186650.012.2377865
GTATAGA255050.011.9998671
CATACAC1182500.011.5398483
ACACATG1192650.011.2701316
ACATGAC986350.011.2543398
CTATACT196600.011.237434
GTATATA511350.011.032751
TATACCG125200.010.9991185
CATGACA1005600.010.9827099
CACATGA1157000.010.9348367
TCTATAC234800.010.7905843
CTAGGCT98600.010.5358114
TCATACA1290800.010.5026032
ATCATAC1228250.010.4801491
GTATAGG144400.010.3207881
CTAGTAC114750.010.2000163
TATACAG170150.09.916475
GTGTATG1135650.09.9064711
TAGTACT199750.09.7659384
GTATTAG228400.09.7567021