FastQCFastQC Report
Tue 15 Nov 2016
SRR1946140.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946140.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38425880
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACCGTG107900.014.37371357
TATACCG138500.014.3234525
CCGTGAG118550.014.2709589
CTAGTAC139000.014.0047433
TCTATAC244000.013.3739373
TATACTG172150.012.9709435
ACCGTGA151800.012.7860088
GTATAGA261700.012.7052211
ATACCGT127050.012.6885926
TGTAGGG211800.012.432422
GTACTAG206100.012.1851191
GTACTAC154850.012.079976
CCTAGTA154850.011.9033292
GATACCC187450.011.6580058
CTATACC195900.011.6171754
TAGACCG95800.011.5315415
GTAGGGA203800.011.5129343
ACATGAC1054150.011.46635158
CATACAC1280550.011.4453723
TAGTACT292450.011.3351454