Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945952.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 97350596 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 53190 | 0.0 | 10.721353 | 4 |
AGAGCGT | 29355 | 0.0 | 9.389524 | 9 |
CCGTACG | 14300 | 0.0 | 9.345871 | 34-35 |
GGTCGCC | 12415 | 0.0 | 9.287224 | 44-45 |
GATCGGA | 69105 | 0.0 | 8.562209 | 2 |
CGGAAGA | 69860 | 0.0 | 8.47593 | 5 |
TGCCGTC | 14455 | 0.0 | 8.41782 | 50-51 |
GCACACG | 19345 | 0.0 | 8.066048 | 12-13 |
GCCGTCT | 15760 | 0.0 | 7.9542823 | 52-53 |
ATCGGAA | 75675 | 0.0 | 7.9030576 | 3 |
CGCCGTA | 14535 | 0.0 | 7.891875 | 46-47 |
AAGAGCG | 36905 | 0.0 | 7.7773457 | 8 |
GAGCGTC | 18080 | 0.0 | 7.622467 | 10-11 |
TATGCCG | 15070 | 0.0 | 7.6222863 | 48-49 |
CGTACGT | 17935 | 0.0 | 7.4245872 | 34-35 |
AGCGTCG | 19260 | 0.0 | 7.309216 | 10-11 |
AGAGCAC | 44865 | 0.0 | 7.0574436 | 9 |
ATGCCGT | 15885 | 0.0 | 7.056879 | 50-51 |
GAAGAGC | 87320 | 0.0 | 7.0071006 | 7 |
GCGTCGT | 20440 | 0.0 | 6.9764166 | 12-13 |