FastQCFastQC Report
Tue 15 Nov 2016
SRR1946078.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946078.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17902344
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG23450.018.21869763
CGTATGC25500.016.62808661
ATGCCGT26850.015.77961464
TGCCGTC30450.013.91813665
GTATGCC30150.013.82765362
GCCGTCT30550.013.5298866
CGGCATT26750.012.9517891
GGTCGCC23350.012.74771463
CGCCGTA23900.012.60444466
CGAGATC64450.011.72228518
GCCGTAT26000.011.58668467
GAGACCG38750.011.5626250
GAGCGGT39050.011.3813529
TGGTCGC26900.011.33067562
AATGCCG37950.011.24243313
CGAGACC39650.011.21094149
GAGATCG71750.010.67644719
AAGAGCG69250.010.60980327
AGCGTCG30000.010.14949130
AGAGCGG43450.010.14687328