FastQCFastQC Report
Tue 15 Nov 2016
SRR1946138.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946138.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34061602
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG115900.012.3307835
TATACTG158050.012.1952265
TCTATAC204250.011.7871593
CTATACT173300.011.4231224
TAGGCTG107800.011.0768295
GTATAGA215150.010.9080051
CCGTGAG77550.010.5442779
CATACAC879250.010.4392363
TACCGTG89200.010.3792527
GCTGTCC90550.010.22413358
CTAGGCT92050.010.1144594
CTGTCCC112750.010.0033189
CTAGTAC103150.09.9833463
GTATATA469150.09.94457151
TATACAG146150.09.93945
ACATGAC718000.09.8309228
ACCGTGA107700.09.6869268
ACACATG926700.09.6564046
ATACCGT95450.09.6508996
GTCGCGC18100.09.6066488