FastQCFastQC Report
Tue 15 Nov 2016
SRR1946263.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946263.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32622332
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGC110850.016.24201494
TATACCG107850.015.9066815
ATACCGT91950.014.2583556
CTAGTAC130850.013.7221593
TATACTG141900.013.5140225
GTATAGA212200.013.3689871
GTACTAG168800.013.127291
CCGTGAG104750.012.8739819
TACCGTG87600.012.82041557
TCTATAC188000.012.801033
TATACAG135850.011.9708045
CTATACT145200.011.7185754
ACCGTGA125750.011.6961978
CATACAC910350.011.6483273
GTGTATG884400.011.5435021
TACTAGG179950.011.4242622
CCTAGTA142800.011.3984682
ACATGAC762600.011.3008428
TAGTACT259750.011.2917654
GTATTAG163250.011.181631