Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946182.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38914422 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 15355 | 0.0 | 17.219963 | 5 |
CCGTGAG | 15255 | 0.0 | 15.609198 | 9 |
TACCGTG | 13395 | 0.0 | 15.602664 | 7 |
ATACCGT | 14660 | 0.0 | 15.569746 | 6 |
CTAGTAC | 17655 | 0.0 | 14.182445 | 3 |
ACCGTGA | 18390 | 0.0 | 14.020813 | 8 |
TCTATAC | 27605 | 0.0 | 13.32495 | 3 |
CTATACC | 21675 | 0.0 | 13.177916 | 4 |
GTATAGA | 30440 | 0.0 | 12.877938 | 1 |
CCTAGTA | 20210 | 0.0 | 12.297023 | 2 |
GTACTAC | 20270 | 0.0 | 11.839856 | 6 |
GTACTAG | 25360 | 0.0 | 11.375153 | 1 |
TATACTG | 19070 | 0.0 | 11.279464 | 5 |
TATGAGC | 18090 | 0.0 | 11.179607 | 94 |
TAGTACT | 37510 | 0.0 | 10.908709 | 4 |
CTATACT | 20145 | 0.0 | 10.820641 | 4 |
CATACAC | 107630 | 0.0 | 10.601951 | 3 |
TAGACCG | 11570 | 0.0 | 10.472733 | 5 |
ACACATG | 105495 | 0.0 | 10.266129 | 6 |
ACATGAC | 73265 | 0.0 | 10.211788 | 8 |