Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946007.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43911222 |
Sequences flagged as poor quality | 0 |
Sequence length | 110 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 10315 | 0.0 | 16.448359 | 1 |
CGAGATC | 33680 | 0.0 | 9.550393 | 18-19 |
GAGCGTG | 10880 | 0.0 | 8.598352 | 104 |
CCGAGAT | 37300 | 0.0 | 8.564678 | 16-17 |
GGCATTC | 19955 | 0.0 | 7.6842723 | 2 |
GCATTCC | 22270 | 0.0 | 7.144152 | 3 |
TATGCCG | 13175 | 0.0 | 6.8088565 | 62-63 |
ATTCCTG | 18935 | 0.0 | 6.715726 | 5 |
CCTGCTG | 17415 | 0.0 | 6.4706707 | 8 |
TTCCTGC | 20155 | 0.0 | 6.360461 | 6 |
GTTCAGC | 79260 | 0.0 | 6.3488894 | 3 |
GCTTGGT | 42535 | 0.0 | 6.31913 | 9 |
GGTCGCG | 8610 | 0.0 | 6.312789 | 104 |
CAGGAAT | 80460 | 0.0 | 6.295735 | 9 |
GTATGCC | 15390 | 0.0 | 6.2681737 | 62-63 |
ATGCCGT | 13105 | 0.0 | 6.2192655 | 64-65 |
CGTATGC | 15790 | 0.0 | 6.2067366 | 60-61 |
CCGGCAT | 7055 | 0.0 | 6.1966424 | 1 |
GAATGCG | 11675 | 0.0 | 6.0432143 | 104 |
AGCTTGG | 45310 | 0.0 | 5.977967 | 8 |