Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946194.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 49391210 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 17085 | 0.0 | 14.975019 | 5 |
TACCGTG | 14025 | 0.0 | 13.857858 | 7 |
TCTATAC | 31280 | 0.0 | 13.8239565 | 3 |
CTATACT | 24750 | 0.0 | 13.734183 | 4 |
TATACTG | 24450 | 0.0 | 13.209775 | 5 |
CCGTGAG | 12935 | 0.0 | 12.884303 | 9 |
ATACCGT | 15175 | 0.0 | 12.714671 | 6 |
CTAGTAC | 18510 | 0.0 | 12.631719 | 3 |
GTATAGA | 32900 | 0.0 | 12.396685 | 1 |
GTCGCGC | 2140 | 0.0 | 12.284947 | 8 |
CATACAC | 118980 | 0.0 | 11.932936 | 3 |
ACCGTGA | 17255 | 0.0 | 11.726309 | 8 |
ACATGAC | 95190 | 0.0 | 11.530608 | 8 |
TATACAG | 22615 | 0.0 | 11.39624 | 5 |
GTACTAG | 21770 | 0.0 | 11.374541 | 1 |
ACACATG | 121465 | 0.0 | 11.239196 | 6 |
TAGGCTG | 15945 | 0.0 | 11.128922 | 5 |
GCTGTCC | 12960 | 0.0 | 11.1207075 | 8 |
CATGACA | 98980 | 0.0 | 11.084352 | 9 |
CTAGGCT | 13955 | 0.0 | 11.068928 | 4 |