FastQCFastQC Report
Tue 15 Nov 2016
SRR1946230.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946230.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26601842
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGTAC92000.014.9170383
TCTATAC164500.014.085383
TATACCG88350.014.0438095
CTATACT140650.013.4998574
TATACTG129950.013.2370855
TAGTACT173150.013.1645734
TATACAG113600.013.1150055
GTATAGA185500.012.9419121
GTATAGG91750.012.8264381
ATACCGT75950.012.7475346
CCGTGAG73400.012.7421819
GTACTAC98250.012.7243566
CATACAC616650.012.6138253
ACCGTGA91800.012.4408598
TAGACCG67300.012.4306125
CCTAGTA105000.012.3093942
TACCGTG69750.012.2634867
ACACATG599500.012.1593226
GTGTATG588500.012.15021
GTACTAG119150.012.1287621