FastQCFastQC Report
Tue 15 Nov 2016
SRR1946029.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946029.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34009160
Sequences flagged as poor quality0
Sequence length99
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG110550.013.4180235
TATACTG176050.013.3122385
CATACAC929450.013.11286453
CTATACT184050.013.0873144
ACACATG915800.012.8157876
ACATGAC783700.012.3830958
TCTATAC221250.012.1899323
TATACAG158850.012.1776275
GTGTATG871650.011.8967661
ACCGTGC42550.011.8026848
CATGACA809900.011.798769
CACATGA880650.011.7538037
GTATATA486550.011.7130381
TCATACA1028250.011.6993412
ATCATAC961150.011.5827711
GTATAGG121000.011.4960011
GTATAGA228200.011.2534171
TAGACCG63550.010.902535
TATACTA313950.010.8715685
GTATTAG215700.010.8702951