Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946162.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31925090 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGAGC | 13850 | 0.0 | 14.58513 | 94 |
GTCGCGC | 1785 | 0.0 | 13.946373 | 8 |
TATACCG | 11145 | 0.0 | 13.654858 | 5 |
CTAGGCT | 9265 | 0.0 | 13.442197 | 4 |
TACCGTG | 9135 | 0.0 | 13.26584 | 7 |
TAGGCTG | 10340 | 0.0 | 12.764625 | 5 |
TATACTG | 14215 | 0.0 | 12.3249235 | 5 |
TCTATAC | 18890 | 0.0 | 12.264061 | 3 |
GCTGTCC | 8980 | 0.0 | 11.977957 | 8 |
CCGTGAG | 7245 | 0.0 | 11.928973 | 9 |
ATACCGT | 9570 | 0.0 | 11.828474 | 6 |
CTATACT | 15140 | 0.0 | 11.826845 | 4 |
ACCGTGA | 10015 | 0.0 | 11.631195 | 8 |
CTGTCCC | 11140 | 0.0 | 11.59501 | 9 |
GTATAGA | 20270 | 0.0 | 11.543252 | 1 |
CATACAC | 83160 | 0.0 | 11.459688 | 3 |
GTATATA | 42485 | 0.0 | 11.203175 | 1 |
TAGGCGG | 9020 | 0.0 | 11.097952 | 4 |
TAGTACT | 17515 | 0.0 | 11.028119 | 4 |
GTACTAG | 11885 | 0.0 | 10.932901 | 1 |