Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946036.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 68931314 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATACT | 36055 | 0.0 | 13.882967 | 4 |
TATACTG | 35270 | 0.0 | 13.79088 | 5 |
TATACCG | 19140 | 0.0 | 13.442385 | 5 |
CTAGTAC | 23930 | 0.0 | 13.421592 | 3 |
CATACAC | 192835 | 0.0 | 12.968983 | 3 |
TCTATAC | 43515 | 0.0 | 12.797831 | 3 |
TATACAG | 32055 | 0.0 | 12.273995 | 5 |
ACACATG | 192765 | 0.0 | 12.207627 | 6 |
ACATGAC | 140015 | 0.0 | 12.152557 | 8 |
GTACTAG | 27725 | 0.0 | 12.000082 | 1 |
CCGTGCG | 3650 | 0.0 | 11.834476 | 9 |
GTATAGG | 24340 | 0.0 | 11.796227 | 1 |
CATGACA | 142155 | 0.0 | 11.784653 | 9 |
CACATGA | 185650 | 0.0 | 11.661479 | 7 |
TCATACA | 215920 | 0.0 | 11.601965 | 2 |
TAGTACT | 45230 | 0.0 | 11.533952 | 4 |
GTATAGA | 46075 | 0.0 | 11.494262 | 1 |
GTGTATG | 187770 | 0.0 | 11.30437 | 1 |
GTATATA | 99760 | 0.0 | 11.239229 | 1 |
ATCATAC | 212775 | 0.0 | 11.119913 | 1 |