Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946121.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33566264 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1460 | 0.0 | 13.841508 | 8 |
GAGCGCG | 2155 | 0.0 | 13.3031225 | 7 |
TATACTG | 16330 | 0.0 | 12.433383 | 5 |
TATACCG | 10720 | 0.0 | 11.837521 | 5 |
CTATACT | 17560 | 0.0 | 11.805493 | 4 |
TCTATAC | 20570 | 0.0 | 11.632046 | 3 |
CATACAC | 97600 | 0.0 | 11.419691 | 3 |
GTATATA | 48355 | 0.0 | 11.220347 | 1 |
GCGCGCC | 2580 | 0.0 | 11.111585 | 9 |
ACACATG | 100375 | 0.0 | 11.059374 | 6 |
TATACAG | 15655 | 0.0 | 11.048072 | 5 |
ACATGAC | 80170 | 0.0 | 10.856677 | 8 |
GTATAGA | 22450 | 0.0 | 10.638717 | 1 |
CATGACA | 81780 | 0.0 | 10.625655 | 9 |
TAGGCTG | 9915 | 0.0 | 10.618106 | 5 |
CACATGA | 95905 | 0.0 | 10.550519 | 7 |
CTAGGCT | 8790 | 0.0 | 10.535313 | 4 |
TCATACA | 106540 | 0.0 | 10.479215 | 2 |
GTGTATG | 92455 | 0.0 | 10.399317 | 1 |
TACCGTG | 7825 | 0.0 | 10.330352 | 7 |