Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945852.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34994146 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 32385 | 0.0 | 8.131113 | 94-95 |
GTATGCC | 36535 | 0.0 | 8.056587 | 94-95 |
CGTATGC | 41945 | 0.0 | 7.9715652 | 94-95 |
TGCCGTC | 25780 | 0.0 | 7.96389 | 94-95 |
GGTCGCC | 12765 | 0.0 | 7.9212947 | 94-95 |
ATGCCGT | 29115 | 0.0 | 7.889401 | 94-95 |
GCCGTCT | 24065 | 0.0 | 7.4687 | 94-95 |
CGCCGTA | 13125 | 0.0 | 7.2349267 | 94-95 |
TCGTATG | 51825 | 0.0 | 7.0961246 | 94-95 |
CTCGTAT | 55175 | 0.0 | 6.570856 | 94-95 |
TGGTCGC | 15205 | 0.0 | 6.5659738 | 92-93 |
GTCGCCG | 16230 | 0.0 | 6.492779 | 94-95 |
GCCGTAT | 13955 | 0.0 | 6.312512 | 94-95 |
CCGTCTT | 27705 | 0.0 | 6.094253 | 94-95 |
TCTCGTA | 61610 | 0.0 | 5.7998915 | 92-93 |
TCGCCGT | 17920 | 0.0 | 5.6822395 | 94-95 |
CTCGGTG | 22175 | 0.0 | 5.5423355 | 94-95 |
ATCTCGT | 73400 | 0.0 | 5.517806 | 92-93 |
CCGTATC | 15565 | 0.0 | 5.3857136 | 94-95 |
TATCTCG | 73445 | 0.0 | 5.378026 | 94-95 |