FastQCFastQC Report
Tue 15 Nov 2016
SRR1946179.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946179.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34403784
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG107250.013.3986655
GTCGCGC16000.012.91457758
TATACTG168400.012.4374175
TATGAGC144050.012.20734594
TCTATAC200750.012.1910653
TAGGCTG105050.011.9805335
CTATACT170650.011.83657554
CTAGTAC115350.011.5246653
GTATAGA215200.011.3707471
CATACAC998650.011.3031623
ACATGAC803700.010.9677588
TAGTACT203800.010.9254184
ACACATG1012450.010.8724586
GTACTAG135500.010.8700851
CTGTCCC103050.010.6183749
CATGACA829450.010.5310779
CCGTGAG79950.010.5144029
CACATGA969000.010.4392097
CCTATAC125450.010.3721443
TACCGTG80600.010.1964427