FastQCFastQC Report
Tue 15 Nov 2016
SRR1946122.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946122.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38827706
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG125450.012.3633745
TATACTG185600.011.6992425
CTAGTAC123400.011.694763
GTATAGA242250.011.6835771
CTATACT190600.011.49286654
TCTATAC229050.011.2054813
TAGGCTG107850.010.9818155
TATACAG173600.010.910615
CATACAC1084550.010.6667013
CTAGGCT98950.010.4988524
TAGTACT240350.010.3656634
ACATGAC896950.010.3429038
GTACTAG153500.010.29138851
GCTGTCC96400.010.28653058
GTATTAG216200.010.155571
ACACATG1110750.010.1250366
CATGACA924300.010.0163899
TAGACAG124900.010.0095135
GTACTAC142000.09.92894656
GTGTATG1060850.09.8742541