Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946099.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 81838632 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 14185 | 0.0 | 20.774466 | 53 |
CGCCGTA | 11905 | 0.0 | 20.167345 | 56 |
GCCGTAT | 12895 | 0.0 | 18.728226 | 57 |
TGGTCGC | 17235 | 0.0 | 16.40754 | 52 |
CCGTATC | 15565 | 0.0 | 15.337818 | 58 |
TATGCCG | 11505 | 0.0 | 14.662483 | 53 |
CGAGACC | 25670 | 0.0 | 13.400955 | 39 |
GAGACCG | 25665 | 0.0 | 13.239957 | 40 |
CGTATGC | 13885 | 0.0 | 13.106647 | 51 |
CTCGGTG | 24735 | 0.0 | 13.0716915 | 47 |
TCGGTGG | 25025 | 0.0 | 12.962312 | 48 |
AATGCCG | 27715 | 0.0 | 12.449444 | 34 |
GTCGCCG | 24490 | 0.0 | 12.347543 | 54 |
GTATGCC | 14725 | 0.0 | 12.264159 | 52 |
ATCAGCC | 24835 | 0.0 | 12.061873 | 2 |
CGTGTAG | 28880 | 0.0 | 12.035355 | 25 |
GACCGAT | 28115 | 0.0 | 11.600682 | 42 |
CGTATCA | 20330 | 0.0 | 11.53757 | 59 |
GGTGGTC | 26165 | 0.0 | 11.302197 | 50 |
ATGCCGT | 12980 | 0.0 | 11.189972 | 54 |