FastQCFastQC Report
Tue 15 Nov 2016
SRR1945976.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945976.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62730032
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG1307710.2084663371445435Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT255300.049.1706161
CGAGATC576100.039.74229418
GCATTCC322850.037.88233
CCGAGAT621800.036.92600317
GCTGAAC312850.036.88185511
TATGCCG237750.036.54732563
CCTGCTG327600.036.4395838
GGCATTC339300.035.9852872
ATTCCTG336800.035.619845
AACCGAG311950.034.8044915
CGTATGC260850.034.03574461
TTCCTGC357400.033.6167536
GGGCGCC66800.033.31808563
TGAACCG343700.033.21949813
GTATGCC268200.032.6339462
GAACCGA330400.032.37425614
ATGCCGT240400.032.24287864
TGCCGTC238150.032.09188565
GAGACCG375350.031.94383650
CTGAACC369050.031.56660512