FastQCFastQC Report
Tue 15 Nov 2016
SRR1946146.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946146.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50429324
Sequences flagged as poor quality0
Sequence length21-100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG235000.012.3333365
CTAGTAC154800.012.1640573
CTATACT257100.011.3449814
TATACCG148500.011.3437135
CATACAC1391600.011.1333573
TCTATAC308650.010.8108843
GTATAGA337000.010.7969451
GTACTAG205300.010.7733581
TACACAT1445800.010.77024655
TACCGTG112950.010.7053497
GACCGTG70400.010.6200897
GTATAGG172100.010.5979241
ACACATG1360300.010.5888056
ACATGAC1205300.010.4877268
TAGTACT301050.010.4092624
CCGTGAG122000.010.4029699
GCCGTGC48500.010.372168
TAGACCG109900.010.3306155
CATGACA1222950.010.1665459
CACATGA1319200.010.040547