Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945937.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 46771672 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCCGTCT | 26055 | 0.0 | 8.277749 | 94-95 |
TGCCGTC | 27800 | 0.0 | 8.149897 | 94-95 |
CGTATGC | 47465 | 0.0 | 7.9555855 | 94-95 |
TATGCCG | 35285 | 0.0 | 7.7831035 | 94-95 |
GTATGCC | 40275 | 0.0 | 7.6828966 | 94-95 |
ATGCCGT | 32705 | 0.0 | 7.484992 | 94-95 |
GGTCGCC | 11955 | 0.0 | 6.8717103 | 94-95 |
TCGTATG | 59875 | 0.0 | 6.532049 | 94-95 |
CGCCGTA | 13660 | 0.0 | 6.2739754 | 94-95 |
CTCGTAT | 63565 | 0.0 | 6.096767 | 92-93 |
CCGTCTT | 33185 | 0.0 | 5.7644053 | 94-95 |
TCGCCGT | 17610 | 0.0 | 5.350676 | 94-95 |
TATCTCG | 85330 | 0.0 | 5.329796 | 94-95 |
GCCAATA | 102080 | 0.0 | 5.320319 | 94-95 |
CGCCAAT | 100750 | 0.0 | 5.313008 | 94-95 |
TGGTCGC | 14725 | 0.0 | 5.2896333 | 94-95 |
GTCGCCG | 15185 | 0.0 | 5.254121 | 94-95 |
TCTCGTA | 72700 | 0.0 | 5.2493277 | 92-93 |
ATCTCGT | 85975 | 0.0 | 5.12459 | 94-95 |
CCGTATC | 19930 | 0.0 | 5.119823 | 94-95 |