FastQCFastQC Report
Tue 15 Nov 2016
SRR1946224.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946224.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20363766
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG89600.021.1387045
CCGTGAG65050.020.9523149
TACCGTG78200.020.1335057
ATACCGT80250.019.4434956
ACCGTGA85200.017.7622368
GTCGCGC10150.017.5953888
TCTATAC142550.017.4085223
CTATACC123750.016.0268654
GTATAGA151850.014.9112041
TCGGGCT24400.014.84164294
CTAGTAC75600.014.2366853
CATACAC480550.014.1815793
TATACTG95450.013.78679855
GTACTAG99800.013.7260291
TCGCGCG14350.013.428069
ACACATG520700.013.2862236
CTATACT96800.013.2061094
GTGTATG464200.013.1933371
ACATGAC411250.013.0509318
TAGTACT143700.012.7552564