FastQCFastQC Report
Wed 16 Nov 2016
SRR1945790.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945790.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48251952
Sequences flagged as poor quality0
Sequence length101
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC86200.09.42306248-49
TATGCCG102350.08.56945246-47
ATGCCGT94700.08.48989746-47
GCCGTCT91750.08.37737148-49
GAGCACA230600.07.90800149
GTATGCC115150.07.48808144-45
TCGGAAG257600.07.4451723
CGTATGC123750.07.32198744-45
GCACACG125250.07.221486610-11
AGAGCAC252500.07.20225248
GTCACCG132850.07.127222528-29
CACCGAT144700.06.67856730-31
ACCGATG156500.06.310773432-33
AGTCACC161700.06.139423428-29
CACACGT156850.05.92502612-13
CCGATGT148700.05.84608532-33
ACGTCTG158550.05.75662414-15
CGTCTGA174350.05.68625316-17
CGGAAGA368350.05.615224
GATCGGA324200.05.57781171