Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946140.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38425880 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACCGTG | 10790 | 0.0 | 14.3737135 | 7 |
TATACCG | 13850 | 0.0 | 14.323452 | 5 |
CCGTGAG | 11855 | 0.0 | 14.270958 | 9 |
CTAGTAC | 13900 | 0.0 | 14.004743 | 3 |
TCTATAC | 24400 | 0.0 | 13.373937 | 3 |
TATACTG | 17215 | 0.0 | 12.970943 | 5 |
ACCGTGA | 15180 | 0.0 | 12.786008 | 8 |
GTATAGA | 26170 | 0.0 | 12.705221 | 1 |
ATACCGT | 12705 | 0.0 | 12.688592 | 6 |
TGTAGGG | 21180 | 0.0 | 12.43242 | 2 |
GTACTAG | 20610 | 0.0 | 12.185119 | 1 |
GTACTAC | 15485 | 0.0 | 12.07997 | 6 |
CCTAGTA | 15485 | 0.0 | 11.903329 | 2 |
GATACCC | 18745 | 0.0 | 11.658005 | 8 |
CTATACC | 19590 | 0.0 | 11.617175 | 4 |
TAGACCG | 9580 | 0.0 | 11.531541 | 5 |
GTAGGGA | 20380 | 0.0 | 11.512934 | 3 |
ACATGAC | 105415 | 0.0 | 11.4663515 | 8 |
CATACAC | 128055 | 0.0 | 11.445372 | 3 |
TAGTACT | 29245 | 0.0 | 11.335145 | 4 |