Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946248.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23019864 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 11450 | 0.0 | 15.473095 | 5 |
CATACAC | 50795 | 0.0 | 13.917693 | 3 |
TATACCG | 8100 | 0.0 | 13.8660965 | 5 |
CTATACT | 12580 | 0.0 | 13.600695 | 4 |
TAATACT | 18875 | 0.0 | 13.522384 | 4 |
ACATGAC | 40570 | 0.0 | 13.169619 | 8 |
TCTATAC | 14855 | 0.0 | 12.9100485 | 3 |
ACACATG | 51905 | 0.0 | 12.901141 | 6 |
GTGTATG | 47905 | 0.0 | 12.821655 | 1 |
CATGACA | 41275 | 0.0 | 12.751019 | 9 |
GTATATA | 33310 | 0.0 | 12.716931 | 1 |
CACATGA | 49640 | 0.0 | 12.571411 | 7 |
GTATAGA | 16015 | 0.0 | 12.519793 | 1 |
ATACTGT | 11570 | 0.0 | 12.428266 | 6 |
TACACTG | 6545 | 0.0 | 12.421606 | 5 |
TAGTACT | 11815 | 0.0 | 12.33299 | 4 |
GTATTAG | 13930 | 0.0 | 12.332644 | 1 |
TAGGCCG | 2800 | 0.0 | 12.251976 | 5 |
TATACAG | 10245 | 0.0 | 12.109697 | 5 |
GTATAGG | 8905 | 0.0 | 12.103641 | 1 |