FastQCFastQC Report
Tue 15 Nov 2016
SRR1946131.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946131.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38882798
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG155850.012.4867865
TATACTG182400.011.64851955
GTCGCGC20100.011.4577288
CCGTGAG105800.011.1497419
ATACCGT132200.011.0573176
TCTATAC253800.011.0024643
TACCGTG128450.010.6847277
GAGCGCG25250.010.6103127
GTATAGA265800.010.580391
CATACAC1101750.010.5008323
TAGGCTG117850.010.4901895
CTATACT199350.010.399624
ACATGAC846900.010.2557718
CTAGGCT106250.010.0879064
ACACATG1127700.010.0657096
CTAGTAC140950.010.0057883
CACATGA1093500.09.9376517
CATGACA870950.09.9181129
ACCGTGA144100.09.9153518
GTATATA564000.09.8391691