FastQCFastQC Report
Tue 15 Nov 2016
SRR1946174.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946174.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39807438
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC176350.012.61622194
TATACTG187900.011.9980435
TATACCG136100.011.9057555
TAGGCTG124450.011.5484195
GTATAGA253450.011.4548841
CTAGTAC128000.011.3045473
TACCGTG105850.011.2706587
TCTATAC239800.011.1278583
CATACAC1415650.011.0974393
ACATGAC1082150.011.0156758
ACACATG1394050.010.7713366
CTATACT205450.010.6559644
CCGTGAG90850.010.59833059
CATGACA1122050.010.5151629
CACATGA1370550.010.4694227
CTAGGCT111450.010.454054
TCATACA1535650.010.2123612
GTACTAG163450.010.1621981
GTATTAG217650.010.1393941
TAGTACT242450.010.0567614