FastQCFastQC Report
Tue 15 Nov 2016
SRR1946249.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946249.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20705074
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG106750.017.2570635
TATACCG74750.015.9058915
CATACAC472300.014.4106723
CTATACT112650.014.1032494
TATACAG95700.013.7988565
ACATGAC377800.013.532928
GTATAGA141950.013.4937351
ACACATG477000.013.467386
GTGTATG452900.013.4359821
TCTATAC134950.013.3401133
GTATAGG76450.013.05063151
CATGACA386150.013.0090069
CACATGA461400.012.883677
GTATTAG124950.012.8813991
TAGGCTG63200.012.789695
CTAGGCT54350.012.7130994
TAATACT170850.012.7104424
GTATATA304500.012.7045031
TATACTA198700.012.6533235
GTCGCGC10050.012.6247358