FastQCFastQC Report
Wed 16 Nov 2016
SRR1945952.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945952.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97350596
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG531900.010.7213534
AGAGCGT293550.09.3895249
CCGTACG143000.09.34587134-35
GGTCGCC124150.09.28722444-45
GATCGGA691050.08.5622092
CGGAAGA698600.08.475935
TGCCGTC144550.08.4178250-51
GCACACG193450.08.06604812-13
GCCGTCT157600.07.954282352-53
ATCGGAA756750.07.90305763
CGCCGTA145350.07.89187546-47
AAGAGCG369050.07.77734578
GAGCGTC180800.07.62246710-11
TATGCCG150700.07.622286348-49
CGTACGT179350.07.424587234-35
AGCGTCG192600.07.30921610-11
AGAGCAC448650.07.05744369
ATGCCGT158850.07.05687950-51
GAAGAGC873200.07.00710067
GCGTCGT204400.06.976416612-13