Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946232.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25738106 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1435 | 0.0 | 18.340967 | 8 |
TATACCG | 8845 | 0.0 | 16.525305 | 5 |
CATACAC | 71915 | 0.0 | 15.0051155 | 3 |
TATACTG | 12285 | 0.0 | 14.958516 | 5 |
CTATACT | 13050 | 0.0 | 14.7298975 | 4 |
ACACATG | 72795 | 0.0 | 14.33947 | 6 |
GTGTATG | 65855 | 0.0 | 14.222141 | 1 |
ACATGAC | 61850 | 0.0 | 14.171807 | 8 |
CACATGA | 70330 | 0.0 | 13.8263 | 7 |
CATGACA | 63860 | 0.0 | 13.688948 | 9 |
TCTATAC | 15145 | 0.0 | 13.654327 | 3 |
CTAGGCT | 7275 | 0.0 | 13.566669 | 4 |
GTATAGA | 16285 | 0.0 | 13.49677 | 1 |
TCATACA | 78845 | 0.0 | 13.489546 | 2 |
GATTGAG | 62415 | 0.0 | 13.139915 | 7 |
CTAGTAC | 9725 | 0.0 | 12.903531 | 3 |
GTATATA | 37835 | 0.0 | 12.899881 | 1 |
ATCATAC | 79335 | 0.0 | 12.725158 | 1 |
TATACAG | 11320 | 0.0 | 12.704626 | 5 |
TTGAGTA | 67445 | 0.0 | 12.703488 | 9 |