Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946084.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40269370 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 6040 | 0.0 | 22.221903 | 63 |
CGCCGTA | 6070 | 0.0 | 21.897556 | 66 |
TATGCCG | 5610 | 0.0 | 21.232038 | 63 |
GCCGTAT | 6380 | 0.0 | 20.78032 | 67 |
CGGCATT | 7445 | 0.0 | 20.577257 | 1 |
TGGTCGC | 7205 | 0.0 | 18.93107 | 62 |
CGTATGC | 6580 | 0.0 | 18.488655 | 61 |
ATGCCGT | 6530 | 0.0 | 17.9911 | 64 |
TGCCGTC | 6835 | 0.0 | 17.600588 | 65 |
CCGTATC | 7735 | 0.0 | 17.593454 | 68 |
GCCGTCT | 7245 | 0.0 | 16.463293 | 66 |
GTATGCC | 7385 | 0.0 | 16.279951 | 62 |
CGAGATC | 17230 | 0.0 | 15.6511135 | 18 |
CCGAGAT | 18555 | 0.0 | 14.72051 | 17 |
AGCGTCG | 9360 | 0.0 | 14.650065 | 30 |
GAGCGTC | 9285 | 0.0 | 14.614977 | 29 |
CGTGTAG | 9270 | 0.0 | 14.385049 | 35 |
CGTATCA | 9620 | 0.0 | 14.291814 | 69 |
CCTGCTG | 11445 | 0.0 | 14.005823 | 8 |
GCGTCGT | 9890 | 0.0 | 13.937694 | 31 |