Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946230.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26601842 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGTAC | 9200 | 0.0 | 14.917038 | 3 |
TCTATAC | 16450 | 0.0 | 14.08538 | 3 |
TATACCG | 8835 | 0.0 | 14.043809 | 5 |
CTATACT | 14065 | 0.0 | 13.499857 | 4 |
TATACTG | 12995 | 0.0 | 13.237085 | 5 |
TAGTACT | 17315 | 0.0 | 13.164573 | 4 |
TATACAG | 11360 | 0.0 | 13.115005 | 5 |
GTATAGA | 18550 | 0.0 | 12.941912 | 1 |
GTATAGG | 9175 | 0.0 | 12.826438 | 1 |
ATACCGT | 7595 | 0.0 | 12.747534 | 6 |
CCGTGAG | 7340 | 0.0 | 12.742181 | 9 |
GTACTAC | 9825 | 0.0 | 12.724356 | 6 |
CATACAC | 61665 | 0.0 | 12.613825 | 3 |
ACCGTGA | 9180 | 0.0 | 12.440859 | 8 |
TAGACCG | 6730 | 0.0 | 12.430612 | 5 |
CCTAGTA | 10500 | 0.0 | 12.309394 | 2 |
TACCGTG | 6975 | 0.0 | 12.263486 | 7 |
ACACATG | 59950 | 0.0 | 12.159322 | 6 |
GTGTATG | 58850 | 0.0 | 12.1502 | 1 |
GTACTAG | 11915 | 0.0 | 12.128762 | 1 |