FastQCFastQC Report
Tue 15 Nov 2016
SRR1945960.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945960.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18770688
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG87750.015.8024145
TATACCG58950.014.5920345
CTATACT99500.013.8447324
TCTATAC113650.013.6522123
CCGTGAG44050.013.2296739
TAGACTG47700.013.2048955
CATACAC547450.013.1660723
TAGACCG43550.012.9521445
GTGTATG532850.012.8168681
ACACATG537900.012.73994356
ACATGAC418350.012.7394678
GTATAGA118550.012.4268851
CACATGA519050.012.387147
GTATAGG65150.012.3538171
CATGACA427200.012.31049
ACAGTGC31900.012.228288
CTAGTAC57000.012.2080243
TATACAG90200.012.0379915
TACCGTG45100.011.9843777
GACCGTG30200.011.9833417