Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946061.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 71582946 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGC | 260355 | 0.36371093193063053 | TruSeq Adapter, Index 5 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 41015 | 0.0 | 33.573048 | 46-47 |
TGCCGTC | 42065 | 0.0 | 32.63295 | 48-49 |
GAGCACA | 85715 | 0.0 | 32.288105 | 9 |
ATGCCGT | 42345 | 0.0 | 32.185722 | 46-47 |
GCCGTCT | 42445 | 0.0 | 32.1139 | 48-49 |
CGTATGC | 43495 | 0.0 | 31.593746 | 44-45 |
TCGGAAG | 158220 | 0.0 | 30.877037 | 3 |
GTATGCC | 44350 | 0.0 | 30.788664 | 44-45 |
AGAGCAC | 90225 | 0.0 | 30.69031 | 8 |
GAGCGTC | 63340 | 0.0 | 30.535357 | 9 |
CGCCGTA | 29375 | 0.0 | 29.851612 | 46-47 |
CGGAAGA | 164450 | 0.0 | 29.839872 | 4 |
GATCGGA | 169415 | 0.0 | 29.53442 | 1 |
ATCGGAA | 170485 | 0.0 | 29.310736 | 2 |
GCCGTAT | 30860 | 0.0 | 28.620657 | 46-47 |
GGTCGCC | 31375 | 0.0 | 28.412594 | 42-43 |
GGGCGCC | 10165 | 0.0 | 27.737745 | 42-43 |
GAAGAGC | 178085 | 0.0 | 27.389484 | 6 |
AGAGCGT | 71910 | 0.0 | 27.208256 | 8 |
CCGTATC | 32960 | 0.0 | 26.724592 | 48-49 |