FastQCFastQC Report
Tue 15 Nov 2016
SRR1946054.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946054.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24285860
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG123100.013.3620955
TATACCG78950.012.20299155
CTATACT118750.012.0310784
CATACAC821450.012.0201393
ACTGTGC40900.011.9502588
ACACATG822050.011.8341416
ACATGAC600400.011.694388
TCTATAC145350.011.4459753
CACATGA788750.011.4459697
CATGACA621650.011.264629
GTATATA378050.011.2352171
TCATACA892850.010.9009962
TATACAG114600.010.7853865
CCGTGAG64950.010.7816029
GTGTATG766550.010.7629681
ATCATAC902350.010.5714821
GTACTAG107900.010.5060281
GACCGTG44300.010.3964957
GTATTAG135650.010.2986341
GATTGAG730200.010.1754737