Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946185.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 55695990 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGAGC | 26350 | 0.0 | 14.547712 | 94 |
TATACCG | 17650 | 0.0 | 11.85151 | 5 |
TATACTG | 26740 | 0.0 | 11.619794 | 5 |
CTAGTAC | 18945 | 0.0 | 11.413768 | 3 |
GTATAGG | 19175 | 0.0 | 11.0863905 | 1 |
CATACAC | 191630 | 0.0 | 10.987107 | 3 |
GTATAGA | 35560 | 0.0 | 10.898144 | 1 |
ACATGAC | 154535 | 0.0 | 10.811428 | 8 |
TCTATAC | 34170 | 0.0 | 10.730388 | 3 |
ACACATG | 189440 | 0.0 | 10.672567 | 6 |
CTATACT | 29020 | 0.0 | 10.59331 | 4 |
CACATGA | 184985 | 0.0 | 10.45726 | 7 |
TAGACCG | 12835 | 0.0 | 10.437761 | 5 |
CATGACA | 158500 | 0.0 | 10.357205 | 9 |
GACCGTG | 8050 | 0.0 | 10.331204 | 7 |
GTACTAG | 22370 | 0.0 | 10.32292 | 1 |
TAGTACT | 35320 | 0.0 | 10.034644 | 4 |
ATACCGT | 16225 | 0.0 | 10.019836 | 6 |
TCATACA | 207090 | 0.0 | 10.019518 | 2 |
TATACAG | 25810 | 0.0 | 9.998681 | 5 |