FastQCFastQC Report
Tue 15 Nov 2016
SRR1946205.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946205.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18318238
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG92600.015.224785
TATACCG65150.015.1476635
CTAGTAC67300.014.8059493
TCTATAC120400.014.4441083
CTATACT94950.013.8604884
GTATAGA128350.013.79031851
GTACTAG80600.013.7834921
CATACAC442450.013.6931753
TACCGTG48100.013.6776627
ACATGAC346850.013.5753618
ATACCGT57300.013.1220056
GTGTATG440550.013.0895051
CATGACA357000.012.9655879
ACACATG449250.012.9603916
GTATAGG66550.012.7322981
TATACAG88050.012.4889895
CACATGA439100.012.4571447
TAGTACT129100.012.4149114
TAATACT147100.012.2057984
CCGTGCC14450.012.0325619