FastQCFastQC Report
Tue 15 Nov 2016
SRR1946141.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946141.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33243196
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG162450.013.2244075
GTCGCGC16100.013.1352698
TATACCG123400.013.1045785
CTATACT175500.012.6996024
TCTATAC199000.012.2159243
ACATGAC747550.011.44788
GTATATA487900.011.4031921
CATACAC998800.011.4020893
GTATAGA219350.011.3420241
TATACAG145100.011.1123645
CTAGTAC117250.011.0283043
ATACCGT101050.010.9297456
TAGGCTG97250.010.9244245
CATGACA777000.010.862689
ACACATG975050.010.8017326
TAGACCG84150.010.7815925
GTATAGG126700.010.7645021
ACTGTGC51550.010.7573598
CACATGA935950.010.7304187
CCGTGAG83300.010.7191499