FastQCFastQC Report
Tue 15 Nov 2016
SRR1946105.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946105.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40714460
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG131500.012.36558155
TATACTG208650.011.5773445
CCGTGCG24700.011.0358119
CTATACT213400.010.9452624
CATACAC1163600.010.8605373
ACACATG1114900.010.6562736
TCTATAC263650.010.6238683
GTATAGA289350.010.5986251
GTATATA614400.010.2966621
ACATGAC856450.010.2668838
CACATGA1074450.010.0951737
CCGTGAG97100.010.0674019
TATACAG194700.09.9930615
GTATTAG250200.09.9823471
CATGACA875400.09.9749899
TCATACA1268100.09.8136072
GTATAGG145600.09.7882871
GTGTATG1126750.09.7848791
ATACCGT125000.09.6248546
TAGACCG92550.09.5973115