Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946049.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 65384864 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGTAC | 25275 | 0.0 | 15.0662775 | 3 |
GTCGCGC | 4095 | 0.0 | 14.675385 | 8 |
TATACCG | 20300 | 0.0 | 13.922608 | 5 |
CATACAC | 211205 | 0.0 | 13.76585 | 3 |
ACATGAC | 166530 | 0.0 | 13.7328 | 8 |
CGAGGGG | 8845 | 0.0 | 13.669347 | 94 |
CTATACT | 30890 | 0.0 | 13.604462 | 4 |
CTAGGCT | 18180 | 0.0 | 13.481956 | 4 |
ACACATG | 214135 | 0.0 | 13.468545 | 6 |
CACATGA | 206405 | 0.0 | 13.156494 | 7 |
CATGACA | 175335 | 0.0 | 12.989609 | 9 |
GTATAGA | 38605 | 0.0 | 12.889883 | 1 |
TAGTACT | 43865 | 0.0 | 12.80234 | 4 |
CCTAGTA | 28390 | 0.0 | 12.784685 | 2 |
TATACTG | 33500 | 0.0 | 12.753128 | 5 |
TCATACA | 227110 | 0.0 | 12.752169 | 2 |
GCTGTCC | 18185 | 0.0 | 12.728202 | 8 |
TATACAG | 28450 | 0.0 | 12.673574 | 5 |
TCTATAC | 37565 | 0.0 | 12.5995035 | 3 |
CGCCGTA | 13520 | 0.0 | 12.422356 | 94 |