FastQCFastQC Report
Tue 15 Nov 2016
SRR1946233.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946233.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26946798
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTGAG67350.012.6325369
TATACCG92500.012.6060045
GTCGCGC8950.012.0794488
TACCGTG64650.011.7062627
ACCGTGA87150.011.2185898
ATACCGT77200.011.2034276
TCTATAC169700.010.5846873
GTATAGA186150.010.3651441
TATACTG129000.010.1326395
CTAGTAC88800.010.0609083
CTATACT131300.010.027644
CATACAC824550.09.9854043
ACATGAC657150.09.9209738
ACACATG822400.09.6594856
GTATATA404100.09.6077041
GTATTAG154950.09.59732151
CATGACA677350.09.5419949
CTATACC130650.09.501674
CACATGA796650.09.4881037
GTACTAG111250.09.4332071