Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946172.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 32385730 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 11420 | 0.0 | 14.515417 | 5 |
TATGAGC | 15450 | 0.0 | 14.061142 | 94 |
TATACTG | 14820 | 0.0 | 12.611183 | 5 |
TACCGTG | 8655 | 0.0 | 12.478901 | 7 |
TCTATAC | 19410 | 0.0 | 11.981475 | 3 |
CATACAC | 89800 | 0.0 | 11.844881 | 3 |
CCGTGAG | 9830 | 0.0 | 11.608507 | 9 |
TAGGCTG | 9335 | 0.0 | 11.519725 | 5 |
ACATGAC | 81185 | 0.0 | 11.360199 | 8 |
ATACCGT | 9855 | 0.0 | 11.340685 | 6 |
ACACATG | 95185 | 0.0 | 11.297592 | 6 |
CTAGTAC | 11295 | 0.0 | 11.27233 | 3 |
GTACTAG | 15095 | 0.0 | 11.2250395 | 1 |
CACATGA | 93130 | 0.0 | 10.906426 | 7 |
CATGACA | 83680 | 0.0 | 10.881275 | 9 |
ACCGTGA | 12655 | 0.0 | 10.872408 | 8 |
GTATAGA | 20345 | 0.0 | 10.826962 | 1 |
TAGTACT | 23045 | 0.0 | 10.786357 | 4 |
GTCGCGC | 1395 | 0.0 | 10.771993 | 8 |
GTATAGG | 10730 | 0.0 | 10.659211 | 1 |