Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946060.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 58908628 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 36 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 43900 | 0.0 | 17.719505 | 3 |
AGAGCAC | 35250 | 0.0 | 17.357803 | 8 |
GAGCACA | 35290 | 0.0 | 17.284863 | 9 |
TGCCGTC | 10440 | 0.0 | 16.545002 | 48-49 |
TATGCCG | 11395 | 0.0 | 16.044926 | 46-47 |
GATCGGA | 50165 | 0.0 | 15.538816 | 1 |
CGGAAGA | 51400 | 0.0 | 15.335151 | 4 |
ATGCCGT | 11760 | 0.0 | 15.047352 | 46-47 |
ATCGGAA | 52095 | 0.0 | 15.044337 | 2 |
GCCGTCT | 11570 | 0.0 | 14.827554 | 48-49 |
CGTATGC | 12995 | 0.0 | 14.503122 | 44-45 |
GTATGCC | 13280 | 0.0 | 14.1033945 | 44-45 |
GTCACCG | 20980 | 0.0 | 13.978648 | 28-29 |
CCGATGT | 20875 | 0.0 | 13.542638 | 32-33 |
CACCGAT | 22205 | 0.0 | 13.334482 | 30-31 |
GAAGAGC | 59680 | 0.0 | 13.008517 | 6 |
ACCGATG | 22700 | 0.0 | 12.992179 | 32-33 |
ACGTCTG | 23355 | 0.0 | 12.797324 | 14-15 |
GCACACG | 23920 | 0.0 | 12.534378 | 10-11 |
CGATGTA | 22970 | 0.0 | 12.235953 | 34-35 |