FastQCFastQC Report
Wed 16 Nov 2016
SRR1945914.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945914.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63570760
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG476300.017.7213924
CGTCCGC130600.017.53369934-35
AGAGCGT259250.016.6983689
GTCCGCA142550.015.76201734-35
ACGTCCG156450.015.16903232-33
GGTCGCC138000.015.11844644-45
GATCGGA573500.014.9828052
CGGAAGA577950.014.8002785
AAGAGCG310400.014.4558848
TATGCCG141600.014.45273948-49
ATCGGAA606600.014.17933
CGCCGTA147250.013.96209646-47
TGCCGTC147900.013.79074650-51
TCCGCAC160200.013.74410436-37
ATGCCGT151200.013.72207350-51
CCGCACA153250.013.63994636-37
GCCGTCT153150.013.56388752-53
AGAGCAC366600.012.6946179
AGTCACG192050.012.65315328-29
CGCACAT164750.012.61752838-39