Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945985.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 71852078 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 10575 | 0.0 | 8.7574625 | 1 |
GCCGTAT | 9380 | 0.0 | 7.864931 | 67 |
CGCCGTA | 8975 | 0.0 | 7.831093 | 66 |
GGTCGCC | 8995 | 0.0 | 7.722062 | 63 |
TATGCCG | 7855 | 0.0 | 7.056351 | 63 |
CGTATGC | 9500 | 0.0 | 6.4426847 | 61 |
TGGTCGC | 11550 | 0.0 | 6.42113 | 62 |
CGAGATC | 26535 | 0.0 | 6.3011837 | 18 |
AATGCCG | 16255 | 0.0 | 6.076566 | 13 |
CCGTATC | 12530 | 0.0 | 5.9945154 | 68 |
CCGAGAT | 33075 | 0.0 | 5.4454536 | 17 |
GCCGTCT | 11425 | 0.0 | 5.3520465 | 66 |
ATGCCGT | 10910 | 0.0 | 5.2350736 | 64 |
GTATGCC | 10920 | 0.0 | 5.2143884 | 62 |
TGCCGTC | 11500 | 0.0 | 5.2063046 | 65 |
GAGACCG | 17555 | 0.0 | 5.0442367 | 50 |