FastQCFastQC Report
Tue 15 Nov 2016
SRR1946008.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946008.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43052638
Sequences flagged as poor quality0
Sequence length110
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT96350.09.223141
GTTCAGC286200.08.3058453
CAGCAGG287250.08.1310396
CGGTTCA304500.07.987171
CAGGAAT326050.07.30612569
CCGAGAT216350.07.24510316-17
CGAGATC222150.07.10368918-19
GCAGGAA353300.06.8458478
GGTTCAG359150.06.7632342
TCAGCAG381900.06.6187565
AGCAGGA389550.06.43535337
GAGACCG168050.06.405493350-51
TATGCCG76550.06.35469662-63
CGAGACC170800.06.256307648-49
AATGCCG198650.05.9695412-13
GCATTCC156150.05.85003763
TGCCGAG203600.05.81168214-15
TTCAGCA451000.05.7196954
CGTATGC94850.05.70748760-61
ATGCCGA217000.05.60825714-15