FastQCFastQC Report
Tue 15 Nov 2016
SRR1946032.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946032.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40193294
Sequences flagged as poor quality0
Sequence length99
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG197950.014.8460835
GACCGTG60400.014.6273967
TAGACCG95450.013.7385
CATACAC1166650.013.1131093
CTAGTAC128700.013.0430453
CTATACT207900.012.9054064
TATACCG118050.012.8410925
ACATGAC815550.012.7830758
ACACATG1108600.012.7091966
GTACTAG158200.012.6445411
TCTATAC248800.012.4285823
AGACCGT88750.012.3649956
TACCGTG85200.012.1707017
CATGACA846050.012.1298389
CACATGA1100150.012.0291057
ACCGTGA125550.011.8888178
GTACTAC139600.011.8247856
GTATAGA257000.011.82011
TCATACA1279200.011.7163972
TAGTACT245700.011.69594