Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946181.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33570814 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12560 | 0.0 | 13.94647 | 5 |
TATACTG | 15440 | 0.0 | 12.531268 | 5 |
TCTATAC | 20015 | 0.0 | 12.298139 | 3 |
TACCGTG | 9690 | 0.0 | 12.067721 | 7 |
ACCGTGA | 10810 | 0.0 | 12.033934 | 8 |
CTATACT | 15945 | 0.0 | 11.813882 | 4 |
CCGTGAG | 7815 | 0.0 | 11.598037 | 9 |
GCCGTGC | 3390 | 0.0 | 11.359721 | 8 |
ATACCGT | 9455 | 0.0 | 11.274917 | 6 |
GTATAGA | 20970 | 0.0 | 10.77154 | 1 |
GTACTAG | 12430 | 0.0 | 10.4489565 | 1 |
GTCGCGC | 1935 | 0.0 | 10.436168 | 8 |
CATACAC | 78210 | 0.0 | 10.19256 | 3 |
GGACCGT | 3370 | 0.0 | 10.172834 | 6 |
TAGACTG | 7730 | 0.0 | 10.145701 | 5 |
CTAGGCT | 9450 | 0.0 | 10.091065 | 4 |
GTATATA | 45530 | 0.0 | 9.932549 | 1 |
TAGGCTG | 10905 | 0.0 | 9.775642 | 5 |
GCTGTCC | 9490 | 0.0 | 9.748855 | 8 |
ACATGAC | 56990 | 0.0 | 9.699099 | 8 |