Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946027.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 74107602 |
Sequences flagged as poor quality | 0 |
Sequence length | 99 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 29650 | 0.0 | 14.663535 | 5 |
TATACTG | 37345 | 0.0 | 14.319146 | 5 |
TACCGTG | 22350 | 0.0 | 14.251638 | 7 |
TCTATAC | 50670 | 0.0 | 13.912336 | 3 |
CTAGTAC | 25835 | 0.0 | 13.715076 | 3 |
CCGTGAG | 21105 | 0.0 | 13.594116 | 9 |
CTATACT | 38655 | 0.0 | 13.509081 | 4 |
GTATAGA | 52680 | 0.0 | 13.105587 | 1 |
CATACAC | 202825 | 0.0 | 12.971589 | 3 |
ATACCGT | 25685 | 0.0 | 12.85377 | 6 |
ACCGTGA | 27080 | 0.0 | 12.72393 | 8 |
ACACATG | 200195 | 0.0 | 12.510218 | 6 |
GTGTATG | 185065 | 0.0 | 12.328053 | 1 |
GTACTAG | 33710 | 0.0 | 12.213859 | 1 |
ACATGAC | 162280 | 0.0 | 12.1980505 | 8 |
TATACAG | 35420 | 0.0 | 12.051632 | 5 |
TCATACA | 222240 | 0.0 | 11.696785 | 2 |
CCTAGTA | 28695 | 0.0 | 11.6075115 | 2 |
GTATTAG | 42555 | 0.0 | 11.599337 | 1 |
GTATATA | 114975 | 0.0 | 11.556416 | 1 |