Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945964.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38988212 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 643968 | 1.651699236682103 | No Hit |
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC | 454414 | 1.1655163873634422 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 7435 | 0.0 | 25.685843 | 56 |
GCCGTAT | 7580 | 0.0 | 25.078932 | 57 |
GGTCGCC | 9295 | 0.0 | 23.254158 | 53 |
CCGTATC | 8940 | 0.0 | 20.990969 | 58 |
TGGTCGC | 10490 | 0.0 | 20.403807 | 52 |
TATGCCG | 7920 | 0.0 | 18.67999 | 53 |
CGTATCA | 10270 | 0.0 | 18.000444 | 59 |
CGTATGC | 8770 | 0.0 | 17.944803 | 51 |
TGCCGTC | 8420 | 0.0 | 17.239464 | 55 |
CGAGATC | 19355 | 0.0 | 17.204914 | 18 |
GGCTGAT | 13215 | 0.0 | 17.110134 | 2 |
ATGCCGT | 8390 | 0.0 | 16.925552 | 54 |
ATCAGCC | 12910 | 0.0 | 16.70226 | 2 |
GTCGCCG | 13020 | 0.0 | 16.682434 | 54 |
TCGGTGG | 15165 | 0.0 | 16.599857 | 48 |
GTATGCC | 9530 | 0.0 | 16.330608 | 52 |
CTCGGTG | 15375 | 0.0 | 16.192139 | 47 |
CCGAGAT | 21390 | 0.0 | 15.715158 | 17 |
GAGACCG | 18070 | 0.0 | 15.11809 | 40 |
GCCGTCT | 8925 | 0.0 | 14.774585 | 56 |