Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946264.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35961946 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12795 | 0.0 | 16.126333 | 5 |
ATACCGT | 10560 | 0.0 | 14.551394 | 6 |
TACCGTG | 10665 | 0.0 | 13.614702 | 7 |
TCTATAC | 20035 | 0.0 | 13.044416 | 3 |
CATACAC | 100730 | 0.0 | 12.435911 | 3 |
AGACCGG | 16170 | 0.0 | 12.3262415 | 94 |
TATACTG | 15980 | 0.0 | 12.118025 | 5 |
GTATAGA | 21980 | 0.0 | 11.879512 | 1 |
ACACATG | 99090 | 0.0 | 11.813123 | 6 |
ACATGAC | 75670 | 0.0 | 11.76161 | 8 |
GTATATA | 47250 | 0.0 | 11.739383 | 1 |
CCGTGAG | 8390 | 0.0 | 11.7050295 | 9 |
GTGTATG | 98905 | 0.0 | 11.654162 | 1 |
CTATACT | 15285 | 0.0 | 11.53201 | 4 |
CACATGA | 94540 | 0.0 | 11.402192 | 7 |
TAGGCTG | 11580 | 0.0 | 11.364777 | 5 |
CATGACA | 80855 | 0.0 | 11.169524 | 9 |
TCATACA | 112495 | 0.0 | 11.119728 | 2 |
TATACAG | 14615 | 0.0 | 11.062952 | 5 |
CTAGGCT | 10170 | 0.0 | 10.722752 | 4 |