FastQCFastQC Report
Tue 15 Nov 2016
SRR1946104.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946104.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53691510
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT73200.07.6906961
AATGCCG96350.06.132398613
CGAGATC171350.05.917711318
GAGACCG104550.05.65868150
GAGCGGT103550.05.641340729
GAGATCG190700.05.445639619
AGAGCGG124000.05.387769728
TCGGAAG189050.05.345647323
CGAGACC113050.05.20220249
GCGGTTC117250.05.04304331
GAGCGTC76050.05.013525529
AGCGTCG80350.05.00690330