Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946009.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 42052478 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 7580 | 0.0 | 29.604446 | 56 |
GCCGTAT | 7585 | 0.0 | 29.496523 | 57 |
GGTCGCC | 9950 | 0.0 | 26.207449 | 53 |
TATGCCG | 6895 | 0.0 | 25.229792 | 53 |
CGTATGC | 8110 | 0.0 | 22.440693 | 51 |
CCGTATC | 9670 | 0.0 | 22.050682 | 58 |
TGGTCGC | 12070 | 0.0 | 21.400152 | 52 |
GTATGCC | 8540 | 0.0 | 20.450806 | 52 |
ATGCCGT | 8185 | 0.0 | 20.271015 | 54 |
CGTATCA | 11565 | 0.0 | 18.438 | 59 |
ATCAGCC | 15280 | 0.0 | 18.371784 | 2 |
GGCTGAT | 15070 | 0.0 | 17.97745 | 2 |
GAGACCG | 18400 | 0.0 | 17.87823 | 40 |
TGCCGTC | 8135 | 0.0 | 17.858019 | 55 |
CTCGGTG | 17670 | 0.0 | 17.680685 | 47 |
CGAGACC | 18740 | 0.0 | 17.572372 | 39 |
TCGGTGG | 17985 | 0.0 | 17.488688 | 48 |
AATGCCG | 19520 | 0.0 | 17.37158 | 34 |
CGTGTAG | 18840 | 0.0 | 17.303469 | 25 |
GCCGTCT | 8485 | 0.0 | 16.916096 | 56 |