FastQCFastQC Report
Wed 16 Nov 2016
SRR1945939.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945939.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92125446
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCTC1235740.1341366640439385TruSeq Adapter, Index 15 (97% over 40bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG2177400.063.8541834
AGAGCGT1133400.060.6036769
GATCGGA2325350.060.117192
CGGAAGA2323400.059.8483125
ATCGGAA2375450.058.879933
AAGAGCG1205200.057.3230258
GAAGAGC2516700.055.1788257
AGAGCAC1279000.054.4736989
AGATCGG2742350.051.096861
GGAAGAG2844700.049.0701076
AAGAGCA1694800.041.6011128
GGTCGCC891800.036.45750844-45
CGCCGTA890650.035.80148346-47
TGGTCGC930800.034.5511942-43
GAGCGTC1013200.034.0705310-11
GCACACG1025650.033.9562412-13
GCCGTAT953450.033.77749648-49
AGCGTCG1027500.033.51733410-11
GCGTCGT1034950.033.3283412-13
CCGTATC962100.033.0859448-49