FastQCFastQC Report
Tue 15 Nov 2016
SRR1946169.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946169.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35265322
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC149000.011.89224794
GTCGCGC16300.011.8116068
TATACCG114800.011.6168215
TATACTG169500.011.6079425
GAGCGCG24450.011.5235027
CTATACT181750.010.6775214
TCTATAC222150.010.6379013
GTATAGA232750.010.4151371
TAGACCG82850.010.2588095
CATACAC993100.010.22814753
ACACATG969900.09.9106696
GTGTATG941750.09.88141
TATACAG157500.09.8388485
GCGCGCC31650.09.79231559
ACATGAC779600.09.7699368
GACCGTG55150.09.6215497
CTAGTAC117450.09.6004713
GTATATA488150.09.5847441
GTATTAG202000.09.507281
ATACCGT102600.09.4740376