Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946208.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31885692 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 9760 | 0.0 | 16.328823 | 5 |
TATACTG | 15355 | 0.0 | 13.654945 | 5 |
CTGAGCG | 7310 | 0.0 | 13.649165 | 94 |
CTATACT | 15910 | 0.0 | 13.533172 | 4 |
TCTATAC | 19360 | 0.0 | 13.404047 | 3 |
TATACAG | 14480 | 0.0 | 13.0190935 | 5 |
GTATAGA | 20605 | 0.0 | 12.853646 | 1 |
CATACAC | 84415 | 0.0 | 12.586097 | 3 |
ATACCGT | 9370 | 0.0 | 12.442417 | 6 |
TAATACT | 24390 | 0.0 | 12.239572 | 4 |
ACATGAC | 69080 | 0.0 | 12.071861 | 8 |
ACACATG | 84745 | 0.0 | 12.015368 | 6 |
AGACCGC | 3750 | 0.0 | 11.922847 | 94 |
CATGACA | 70050 | 0.0 | 11.71579 | 9 |
GTATATA | 43575 | 0.0 | 11.702601 | 1 |
GTATAGG | 10655 | 0.0 | 11.61162 | 1 |
CACATGA | 83630 | 0.0 | 11.523375 | 7 |
CTATACC | 14270 | 0.0 | 11.464617 | 4 |
TCATACA | 93695 | 0.0 | 11.25043 | 2 |
GTGTATG | 81090 | 0.0 | 11.225461 | 1 |