FastQCFastQC Report
Wed 16 Nov 2016
SRR1945773.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945773.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences200000000
Sequences flagged as poor quality0
Sequence length101
%GC35

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG701200.09.6596763
GCACACG337950.08.98835510-11
TGCCGTC268050.08.8933748-49
GAGCACA687950.08.7546989
AGAGCAC728450.08.3883788
GCCGTCT289550.08.22480948-49
ATGCCGT331200.07.43690346-47
TATGCCG346050.07.15914746-47
GTATGCC376050.06.99348444-45
GATCGGA939400.06.81663751
CGGAAGA1090000.06.7248964
ACGTCTG461800.06.580931714-15
CGTATGC394600.06.555861544-45
CACACGT470850.06.397480512-13
CGTCTGA487700.06.23612316-17
ATCGGAA1215400.06.2282052
GAAGAGC1221300.05.75316956
CAGTCAC561150.05.74836626-27
ACACGTC549950.05.7460712-13
GTCACAC575150.05.720153328-29