Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946035.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30257686 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12105 | 0.0 | 15.10619 | 5 |
CCGTGAG | 8665 | 0.0 | 14.046209 | 9 |
TACCGTG | 9510 | 0.0 | 13.19311 | 7 |
ATACCGT | 10985 | 0.0 | 13.091049 | 6 |
ACCGTGA | 11540 | 0.0 | 12.297706 | 8 |
TCTATAC | 21120 | 0.0 | 12.197104 | 3 |
CTAGTAC | 10910 | 0.0 | 12.021247 | 3 |
GTCGCGC | 1310 | 0.0 | 11.478936 | 8 |
CCGTGCG | 1780 | 0.0 | 11.352106 | 9 |
GCCGTGC | 3195 | 0.0 | 11.325121 | 8 |
GTATAGA | 23540 | 0.0 | 11.268276 | 1 |
TATACTG | 15250 | 0.0 | 11.035278 | 5 |
CTATACC | 17220 | 0.0 | 10.782862 | 4 |
GTACTAG | 15015 | 0.0 | 10.743694 | 1 |
CTATACT | 15605 | 0.0 | 10.723988 | 4 |
GTACTAC | 12685 | 0.0 | 10.447484 | 6 |
GTATAGG | 10900 | 0.0 | 10.398612 | 1 |
TAGTACT | 21870 | 0.0 | 10.338712 | 4 |
CATACAC | 87740 | 0.0 | 10.254498 | 3 |
GTATTAG | 18665 | 0.0 | 10.179775 | 1 |