FastQCFastQC Report
Wed 16 Nov 2016
SRR1945959.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945959.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81687784
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG411250.06.9044774
GGTCGCC102300.06.486120744-45
AGAGCGT230950.06.0567929
GATCGGA551350.05.5734142
CGGAAGA562050.05.40042735
GAGCGTC138350.05.32506110-11
GCACACG144800.05.31331612-13
CGCCGTA124300.05.117384446-47
TATGCCG124500.05.058237648-49
ATCGGAA616400.05.0150233
TGGTCGC132250.05.010840442-43