FastQCFastQC Report
Tue 15 Nov 2016
SRR1946144.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946144.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35253024
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG135700.013.5444715
ATACCGT113050.012.9707956
GTATAGA246100.012.9364021
TATACTG163600.012.4701465
TCTATAC223600.012.4059963
CCGTGAG95950.012.1957529
TACCGTG108650.011.8087137
CTATACT172400.011.5905244
CATACAC1098500.011.3678783
ACATGAC837850.011.3470568
ACACATG1082200.011.1741596
CACATGA1048100.010.8468287
CATGACA884900.010.8181029
GTCGCGC18450.010.6980978
ACCGTGA124450.010.6867388
CTAGTAC136600.010.5666933
ACTGTGC54750.010.47199258
TCATACA1184850.010.3450392
GTATAGG132450.010.1898171
GAGCGCG20100.010.0540737