FastQCFastQC Report
Tue 15 Nov 2016
SRR1945988.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945988.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33223974
Sequences flagged as poor quality0
Sequence length101
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC151600.09.00315794-95
ATGCCGT174100.08.74104594-95
GCCGTCT144350.08.66465194-95
CGTATGC251250.08.19584894-95
GGTCGCC160050.08.12669294-95
TATGCCG196350.07.992730694-95
TCGTATG297900.07.351420494-95
GTCGCCG164900.07.253196794-95
GTATGCC228450.07.24436494-95
TGGTCGC155600.06.90570892-93
CGCCGTA114000.06.820638794-95
CTCGTAT330000.06.48501194-95
GTGGTCG190250.06.235269592-93
TCGCCGT146650.05.88581694-95
CTCGGTG273950.05.841520394-95
GCCGTAT137350.05.78229194-95
GGCATCT447850.05.70234994-95
AGGCATC482100.05.622763694-95
TCTCGTA387850.05.6022492-93
CCGTCTT197350.05.54246494-95