Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946097.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44707266 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 6375 | 0.0 | 21.420553 | 63 |
GGTCGCC | 6815 | 0.0 | 21.065138 | 63 |
CGCCGTA | 6970 | 0.0 | 20.396612 | 66 |
CGGCATT | 8375 | 0.0 | 20.149948 | 1 |
GCCGTAT | 7045 | 0.0 | 20.082676 | 67 |
CGTATGC | 7170 | 0.0 | 19.154238 | 61 |
ATGCCGT | 7275 | 0.0 | 18.910591 | 64 |
TGCCGTC | 7370 | 0.0 | 18.431942 | 65 |
TGGTCGC | 8040 | 0.0 | 18.036497 | 62 |
GTATGCC | 7920 | 0.0 | 17.425247 | 62 |
GCCGTCT | 8155 | 0.0 | 16.917534 | 66 |
CCGTATC | 8860 | 0.0 | 16.44421 | 68 |
CGAGATC | 18815 | 0.0 | 16.075762 | 18 |
CGTGTAG | 9770 | 0.0 | 14.8386 | 35 |
GAGCGTC | 9905 | 0.0 | 14.731554 | 29 |
GAGACCG | 10445 | 0.0 | 14.528594 | 50 |
AGCGTCG | 10000 | 0.0 | 14.4185505 | 30 |
CCGAGAT | 21875 | 0.0 | 13.954435 | 17 |
GAGATCG | 21865 | 0.0 | 13.898748 | 19 |
GCGTCGT | 10515 | 0.0 | 13.714684 | 31 |