Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946174.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39807438 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGAGC | 17635 | 0.0 | 12.616221 | 94 |
TATACTG | 18790 | 0.0 | 11.998043 | 5 |
TATACCG | 13610 | 0.0 | 11.905755 | 5 |
TAGGCTG | 12445 | 0.0 | 11.548419 | 5 |
GTATAGA | 25345 | 0.0 | 11.454884 | 1 |
CTAGTAC | 12800 | 0.0 | 11.304547 | 3 |
TACCGTG | 10585 | 0.0 | 11.270658 | 7 |
TCTATAC | 23980 | 0.0 | 11.127858 | 3 |
CATACAC | 141565 | 0.0 | 11.097439 | 3 |
ACATGAC | 108215 | 0.0 | 11.015675 | 8 |
ACACATG | 139405 | 0.0 | 10.771336 | 6 |
CTATACT | 20545 | 0.0 | 10.655964 | 4 |
CCGTGAG | 9085 | 0.0 | 10.5983305 | 9 |
CATGACA | 112205 | 0.0 | 10.515162 | 9 |
CACATGA | 137055 | 0.0 | 10.469422 | 7 |
CTAGGCT | 11145 | 0.0 | 10.45405 | 4 |
TCATACA | 153565 | 0.0 | 10.212361 | 2 |
GTACTAG | 16345 | 0.0 | 10.162198 | 1 |
GTATTAG | 21765 | 0.0 | 10.139394 | 1 |
TAGTACT | 24245 | 0.0 | 10.056761 | 4 |