Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945873.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20507968 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 22627 | 0.11033272530949921 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 9685 | 0.0 | 16.162542 | 5 |
TATACCG | 7090 | 0.0 | 15.912193 | 5 |
CATACAC | 64630 | 0.0 | 14.493024 | 3 |
ACATGAC | 49860 | 0.0 | 14.421975 | 8 |
ATACCGT | 5800 | 0.0 | 13.938762 | 6 |
ACACATG | 64370 | 0.0 | 13.924863 | 6 |
CATGACA | 50110 | 0.0 | 13.909139 | 9 |
GTATAGA | 12340 | 0.0 | 13.847904 | 1 |
TCTATAC | 12235 | 0.0 | 13.83574 | 3 |
CACATGA | 62055 | 0.0 | 13.822464 | 7 |
TACCGTG | 5315 | 0.0 | 13.61811 | 7 |
TATACAG | 9575 | 0.0 | 13.353501 | 5 |
CCGTGAG | 4855 | 0.0 | 13.262177 | 9 |
TCATACA | 69710 | 0.0 | 13.197158 | 2 |
ATCATAC | 70810 | 0.0 | 12.704533 | 1 |
TACACTG | 6090 | 0.0 | 12.658772 | 5 |
CTATACT | 10035 | 0.0 | 12.651246 | 4 |
GTGTATG | 60355 | 0.0 | 12.604358 | 1 |
CTAGTAC | 5835 | 0.0 | 12.490927 | 3 |
ACCGTGA | 6710 | 0.0 | 12.397563 | 8 |