FastQCFastQC Report
Tue 15 Nov 2016
SRR1946085.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946085.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63644370
Sequences flagged as poor quality0
Sequence length76
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC154950.035.4396953
CGCCGTA147800.034.768156
GCCGTAT153450.033.90595257
TGGTCGC169150.031.74479952
CCGTATC170650.030.58701358
CGTATCA199750.027.05431759
GTCGCCG225050.025.04959954
CTCGGTG235050.024.19560647
TCGGTGG237000.024.1027748
CGTGTAG208000.023.38774125
GAGCGTC218650.022.33297719
AGCGTCG221300.022.10838520
GCGTCGT221950.021.987521
TATGCCG93200.021.9554353
TCGCCGT235550.021.65711455
GGTGGTC254700.021.52225550
GTCGTGT232500.020.7744223
AAGAGCG497300.020.3248317
TCGGAAG507400.020.07291413
CGTATGC112750.020.0504951