FastQCFastQC Report
Tue 15 Nov 2016
SRR1946227.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946227.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35468330
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC383450.10811053128241448No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG109300.015.6560135
CTATACT168300.015.1954914
TATACTG165550.014.965165
CATACAC1124900.014.9194563
TCTATAC206550.014.3843623
ACACATG1178950.014.326856
ACATGAC941250.014.2982618
CATGACA965350.013.7744799
GTGTATG1072700.013.743411
CACATGA1116900.013.6494987
TCATACA1269550.013.2804392
ATCATAC1217400.013.2574871
TATACAG157700.013.235835
GTATATA501650.012.9967931
GATTGAG1022950.012.9959787
ATACCGT98600.012.729856
GTATAGA223950.012.6450121
TTGAGTA1090100.012.6077639
ATTGAGT1114000.012.6042478
GTATAGG119750.012.4132451