Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946023.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28612512 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1135 | 0.0 | 18.552576 | 8 |
TATACTG | 14925 | 0.0 | 15.12037 | 5 |
CTATACT | 15520 | 0.0 | 14.601026 | 4 |
TATACCG | 9365 | 0.0 | 14.498395 | 5 |
CTGAGCG | 8830 | 0.0 | 14.064505 | 94 |
TCGCGCG | 1665 | 0.0 | 13.208413 | 9 |
CATACAC | 68855 | 0.0 | 13.130518 | 3 |
TCTATAC | 18625 | 0.0 | 12.996587 | 3 |
CCGTGCG | 1765 | 0.0 | 12.990276 | 9 |
GAGCGCG | 1745 | 0.0 | 12.873919 | 7 |
TAGGCTG | 8850 | 0.0 | 12.591092 | 5 |
TATACAG | 13455 | 0.0 | 12.561839 | 5 |
ACACATG | 68470 | 0.0 | 12.255998 | 6 |
ACATGAC | 58345 | 0.0 | 12.2548275 | 8 |
TGAGCGG | 9150 | 0.0 | 12.138543 | 94 |
GTATTAG | 18330 | 0.0 | 12.1128025 | 1 |
GTATAGG | 10820 | 0.0 | 11.948422 | 1 |
CATGACA | 58550 | 0.0 | 11.915651 | 9 |
CTAGTAC | 8520 | 0.0 | 11.869959 | 3 |
ACTGTGC | 4280 | 0.0 | 11.80776 | 8 |