FastQCFastQC Report
Tue 15 Nov 2016
SRR1946183.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946183.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36635858
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG120300.012.6091975
TACCGTG102000.012.0171677
CTATACT180250.011.3369524
TCTATAC224650.011.2500393
ATACCGT109450.011.1991126
TATACTG174600.010.9740375
CCGTGAG86550.010.7439679
TATGAGC154750.010.66144394
GTATAGA243300.010.6380631
CATACAC1088150.010.4904873
ACATGAC804350.010.4104738
GTACTAG132750.010.3511911
ACACATG1055100.010.2552846
CTAGGCT91250.010.1932964
TATACAG152000.010.1339975
TAGGCTG113850.010.1060995
CATGACA825050.010.086729
CACATGA1023000.09.9206697
GTATATA471100.09.7893751
CTAGTAC113150.09.7564433