FastQCFastQC Report
Tue 15 Nov 2016
SRR1946103.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946103.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45244744
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG63850.021.226163
GGTCGCC64100.019.9930363
CGGCATT87750.019.7059821
CGTATGC72000.018.92274761
ATGCCGT74200.018.50442964
CGCCGTA64650.017.70818966
GTATGCC79300.017.49080562
TGCCGTC77250.017.36558765
GCCGTAT71950.015.61697367
GCCGTCT85950.015.56697366
CGTGTAG96800.015.37116835
TGGTCGC78700.015.25939462
CGAGATC201100.014.69826118
AGCGTCG103750.014.56892830
CCGAGAT207650.014.4042517
CCTGCTG129600.013.922938
GAGCGTC107550.013.89206929
GCTGAAC132350.013.58121111
CCGTATC84900.013.40004568
GAGACCG110350.013.31540550