FastQCFastQC Report
Tue 15 Nov 2016
SRR1946053.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946053.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20043446
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG69650.012.0130415
TATACTG96350.011.7088325
ATACCGT57900.011.6877156
CCGTGCG14500.011.6671289
TACCGTG50800.011.4703767
TCTATAC124550.010.869333
CTAGTAC70250.010.8398363
GTATAGA132550.010.7862951
CTATACT101600.010.7336734
CATACAC586400.010.5250653
CCGTGAG53400.010.3841329
GTACTAC72450.010.37832456
GTATTAG114800.010.3237411
TAGTACT136550.010.18952754
ACATGAC481650.010.1175548
GTATATA320800.010.1009751
ACACATG598700.010.0315326
TAGGCTG60650.09.9204925
CACATGA581950.09.8270837
CTGAGCG75750.09.80400694