Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946206.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22842330 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 7135 | 0.0 | 15.281943 | 5 |
CTATACT | 11605 | 0.0 | 15.02496 | 4 |
CTAGTAC | 7850 | 0.0 | 14.548599 | 3 |
TATACTG | 10920 | 0.0 | 14.5471735 | 5 |
CATACAC | 64590 | 0.0 | 13.832521 | 3 |
TCTATAC | 14000 | 0.0 | 13.831005 | 3 |
ACATGAC | 51965 | 0.0 | 13.80153 | 8 |
TAGTACT | 14940 | 0.0 | 13.715777 | 4 |
ACACATG | 63945 | 0.0 | 13.464881 | 6 |
ATACCGT | 6235 | 0.0 | 13.341984 | 6 |
TATACAG | 10465 | 0.0 | 13.338341 | 5 |
CATGACA | 52870 | 0.0 | 13.316378 | 9 |
GTGTATG | 59705 | 0.0 | 13.284799 | 1 |
CACATGA | 62980 | 0.0 | 13.133898 | 7 |
TAGACCG | 5895 | 0.0 | 12.995361 | 5 |
GTATAGA | 14200 | 0.0 | 12.994617 | 1 |
GTACTAG | 9815 | 0.0 | 12.661332 | 1 |
TCATACA | 71605 | 0.0 | 12.523515 | 2 |
GATTGAG | 56655 | 0.0 | 12.227647 | 7 |
CCGTGAG | 6310 | 0.0 | 12.140648 | 9 |