Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945850.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22656458 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGTAC | 8580 | 0.0 | 15.618286 | 3 |
TATACCG | 6910 | 0.0 | 15.102142 | 5 |
GTACTAG | 10885 | 0.0 | 13.924611 | 1 |
CCGTGAG | 6425 | 0.0 | 13.752031 | 9 |
CATACAC | 68320 | 0.0 | 13.206964 | 3 |
TATACTG | 10605 | 0.0 | 13.164653 | 5 |
TCTATAC | 13985 | 0.0 | 13.145894 | 3 |
ATACCGT | 6455 | 0.0 | 13.106946 | 6 |
CCTAGTA | 9245 | 0.0 | 13.073626 | 2 |
GTACTAC | 9275 | 0.0 | 13.024002 | 6 |
TACCGTG | 5375 | 0.0 | 12.941584 | 7 |
ACATGAC | 52575 | 0.0 | 12.854865 | 8 |
ACCGTGA | 8420 | 0.0 | 12.726548 | 8 |
ACACATG | 67290 | 0.0 | 12.559271 | 6 |
CTATACT | 10905 | 0.0 | 12.546568 | 4 |
CATGACA | 52920 | 0.0 | 12.539985 | 9 |
GACCGTG | 4500 | 0.0 | 12.220179 | 7 |
CACATGA | 64835 | 0.0 | 12.1715355 | 7 |
TACTAGG | 11705 | 0.0 | 12.05368 | 2 |
TAGTACT | 16590 | 0.0 | 11.931452 | 4 |