Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945906.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24052830 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 12240 | 0.0 | 15.016145 | 5 |
CTATACT | 12380 | 0.0 | 13.55845 | 4 |
TATACCG | 7535 | 0.0 | 13.35038 | 5 |
CCGTGCG | 1450 | 0.0 | 13.289607 | 9 |
GAGCGCG | 1135 | 0.0 | 13.251493 | 7 |
CATACAC | 64090 | 0.0 | 13.154521 | 3 |
TCTATAC | 15115 | 0.0 | 12.941071 | 3 |
ACATGAC | 47165 | 0.0 | 12.75528 | 8 |
CATGACA | 47450 | 0.0 | 12.609226 | 9 |
ACACATG | 64130 | 0.0 | 12.540655 | 6 |
GTATAGG | 8525 | 0.0 | 12.423451 | 1 |
GTGTATG | 61690 | 0.0 | 12.383914 | 1 |
GTATATA | 36965 | 0.0 | 12.262803 | 1 |
GTATAGA | 16475 | 0.0 | 12.171338 | 1 |
CACATGA | 62530 | 0.0 | 12.071683 | 7 |
TAGACCG | 5250 | 0.0 | 11.908456 | 5 |
TAATACT | 20075 | 0.0 | 11.780804 | 4 |
ATACTGT | 12590 | 0.0 | 11.6855755 | 6 |
TCATACA | 70440 | 0.0 | 11.650928 | 2 |
ATCATAC | 69555 | 0.0 | 11.457314 | 1 |