Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946106.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 49973392 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 17310 | 0.0 | 12.815583 | 5 |
CCGTGAG | 12800 | 0.0 | 11.56557 | 9 |
TATACTG | 23555 | 0.0 | 11.373265 | 5 |
TCTATAC | 30205 | 0.0 | 11.329818 | 3 |
GTCGCGC | 2905 | 0.0 | 11.324585 | 8 |
CTATACT | 25055 | 0.0 | 11.200775 | 4 |
GACCGTG | 8885 | 0.0 | 11.160848 | 7 |
ACATGAC | 121195 | 0.0 | 10.9392805 | 8 |
GTATAGA | 31475 | 0.0 | 10.919185 | 1 |
CATACAC | 146065 | 0.0 | 10.665388 | 3 |
ACACATG | 145970 | 0.0 | 10.653936 | 6 |
TAGGCTG | 15620 | 0.0 | 10.471085 | 5 |
CATGACA | 124350 | 0.0 | 10.427313 | 9 |
CACATGA | 141680 | 0.0 | 10.366056 | 7 |
ACCGTGA | 18835 | 0.0 | 10.330113 | 8 |
TAGACCG | 13570 | 0.0 | 10.078748 | 5 |
AGACCGT | 12855 | 0.0 | 9.980849 | 6 |
CTAGGCT | 14160 | 0.0 | 9.95924 | 4 |
GTGTATG | 139390 | 0.0 | 9.801727 | 1 |
TAGTACT | 31090 | 0.0 | 9.782542 | 4 |