FastQCFastQC Report
Tue 15 Nov 2016
SRR1946034.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946034.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54565444
Sequences flagged as poor quality0
Sequence length99
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGTAC157100.014.0003933
TATACTG246050.013.8905415
CATACAC1570400.013.295093
TATACAG249000.013.2404315
TATACCG163400.013.0621855
ACATGAC1378050.013.0418678
ACACATG1511800.012.9830356
GTACTAG212050.012.966031
GTATAGG174550.012.8198541
GTGTATG1425050.012.7351391
CTATACT255850.012.4315684
CATGACA1441650.012.3181279
CACATGA1515400.012.295537
TCTATAC296600.012.2913663
TAGTACT325400.012.2038144
TCATACA1697100.012.1100822
GTATAGA323000.012.0841831
GTATATA739850.011.99126151
GATTGAG1347800.011.8027417
CCTAGTA171600.011.7110352