Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946241.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18925912 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 6305 | 0.0 | 15.802803 | 5 |
TATACTG | 8860 | 0.0 | 15.224096 | 5 |
CATACAC | 46745 | 0.0 | 14.226715 | 3 |
TCTATAC | 11525 | 0.0 | 14.191283 | 3 |
CTATACT | 9310 | 0.0 | 13.93294 | 4 |
TATACAG | 8245 | 0.0 | 13.452553 | 5 |
ACACATG | 47685 | 0.0 | 13.384475 | 6 |
GTGTATG | 44655 | 0.0 | 13.125239 | 1 |
TAATACT | 14480 | 0.0 | 13.047907 | 4 |
ACATGAC | 37075 | 0.0 | 12.942791 | 8 |
TCATACA | 52440 | 0.0 | 12.601028 | 2 |
CACATGA | 45080 | 0.0 | 12.479397 | 7 |
ATCATAC | 49420 | 0.0 | 12.355069 | 1 |
CATGACA | 38405 | 0.0 | 12.3110075 | 9 |
GTATATA | 26020 | 0.0 | 12.230589 | 1 |
GTATAGA | 11780 | 0.0 | 12.2288065 | 1 |
ATAATAC | 13715 | 0.0 | 11.788159 | 3 |
GTATTAT | 13630 | 0.0 | 11.743322 | 1 |
ATACCGT | 5710 | 0.0 | 11.687876 | 6 |
TATACTA | 15290 | 0.0 | 11.680448 | 5 |