FastQCFastQC Report
Wed 16 Nov 2016
SRR1945852.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945852.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34994146
Sequences flagged as poor quality0
Sequence length101
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG323850.08.13111394-95
GTATGCC365350.08.05658794-95
CGTATGC419450.07.971565294-95
TGCCGTC257800.07.9638994-95
GGTCGCC127650.07.921294794-95
ATGCCGT291150.07.88940194-95
GCCGTCT240650.07.468794-95
CGCCGTA131250.07.234926794-95
TCGTATG518250.07.096124694-95
CTCGTAT551750.06.57085694-95
TGGTCGC152050.06.565973892-93
GTCGCCG162300.06.49277994-95
GCCGTAT139550.06.31251294-95
CCGTCTT277050.06.09425394-95
TCTCGTA616100.05.799891592-93
TCGCCGT179200.05.682239594-95
CTCGGTG221750.05.542335594-95
ATCTCGT734000.05.51780692-93
CCGTATC155650.05.385713694-95
TATCTCG734450.05.37802694-95