Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945984.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 59851532 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 326289 | 0.5451639901214225 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 170696 | 0.2851990488731349 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 105120 | 0.0 | 51.08858 | 9 |
TATGCCG | 81275 | 0.0 | 50.911682 | 43 |
GCGGTTC | 104895 | 0.0 | 50.22913 | 11 |
AGAGCGG | 112270 | 0.0 | 50.12669 | 8 |
CGTATGC | 83890 | 0.0 | 49.930634 | 41 |
ATGCCGT | 79205 | 0.0 | 49.863415 | 44 |
AGCGGTT | 106650 | 0.0 | 49.721527 | 10 |
TGCCGTC | 78525 | 0.0 | 49.566547 | 45 |
GTATGCC | 84595 | 0.0 | 49.2777 | 42 |
GCCGTCT | 77555 | 0.0 | 48.91986 | 46 |
GAGACCG | 95245 | 0.0 | 48.844975 | 30 |
CGAGACC | 96425 | 0.0 | 48.61576 | 29 |
AATGCCG | 101780 | 0.0 | 47.50288 | 24 |
GACCGAT | 94660 | 0.0 | 47.306026 | 32 |
AGACCGA | 98615 | 0.0 | 46.998547 | 31 |
TCGTATG | 91525 | 0.0 | 46.480225 | 40 |
CCGATAT | 60935 | 0.0 | 45.98668 | 34 |
GTTCAGC | 112005 | 0.0 | 45.899437 | 14 |
CAGCAGG | 110845 | 0.0 | 45.667065 | 17 |
TGCCGAG | 104970 | 0.0 | 45.600254 | 26 |