FastQCFastQC Report
Tue 15 Nov 2016
SRR1946243.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946243.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24491266
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC256890.10489045360088778No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC14400.015.9897298
TCGCGCG17350.014.0834419
CATACAC705650.013.2960973
TATACCG81200.013.253095
ACATGAC593750.013.1137358
CTATACT117450.013.0472074
CATGACA612400.012.5454869
ACACATG707050.012.5280866
TCTATAC139100.012.4357983
CACATGA688550.012.3047847
TATACTG110700.012.2259485
GTGTATG680500.012.0844671
TATACAG102700.012.0801195
TCATACA772000.011.8854462
CTAGGCT68850.011.811234
ATCATAC768350.011.5727241
TACCGTG62800.011.5232467
TAGGCTG79200.011.4516975
GTATAGA145550.011.3839551
GATTGAG643350.011.3286527