Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945977.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 70477046 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 205440 | 0.29149916413920074 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGGCAT | 18250 | 0.0 | 45.230263 | 1 |
CGGCATT | 22860 | 0.0 | 38.425243 | 2 |
CCGAGAT | 64140 | 0.0 | 31.564775 | 17 |
GGCATTC | 31125 | 0.0 | 31.015797 | 3 |
CGAGATC | 68650 | 0.0 | 29.441599 | 18 |
TGAACCG | 32375 | 0.0 | 29.342121 | 14 |
AACCGGG | 21310 | 0.0 | 28.91998 | 16 |
GCATTCC | 32805 | 0.0 | 28.498028 | 4 |
CTGAACC | 37940 | 0.0 | 26.44715 | 13 |
GCTGAAC | 26615 | 0.0 | 25.781399 | 12 |
GGTCGCC | 14755 | 0.0 | 24.661768 | 53 |
CCTGCTG | 25100 | 0.0 | 24.567148 | 9 |
GAACCGG | 27295 | 0.0 | 24.511684 | 15 |
CCGGGAT | 17320 | 0.0 | 24.388044 | 18 |
ACCGGGA | 23580 | 0.0 | 24.091007 | 17 |
ATTCCTG | 32155 | 0.0 | 21.833246 | 6 |
CGCCGTA | 11450 | 0.0 | 21.097065 | 56 |
ATCAGCC | 24610 | 0.0 | 21.0025 | 2 |
GAGACCG | 79750 | 0.0 | 20.677704 | 50 |
GGCTGAT | 24795 | 0.0 | 20.463953 | 2 |