Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946001.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 69898038 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 27665 | 0.0 | 13.55999 | 3 |
GATCGGA | 34440 | 0.0 | 11.466289 | 1 |
ATCGGAA | 37365 | 0.0 | 10.63113 | 2 |
AGAGCAC | 31560 | 0.0 | 10.483829 | 8 |
GAGCACA | 31965 | 0.0 | 10.277086 | 9 |
CGGAAGA | 41835 | 0.0 | 9.70868 | 4 |
GCACACG | 17580 | 0.0 | 9.035657 | 10-11 |
ACGTCTG | 19075 | 0.0 | 8.179608 | 14-15 |
GAAGAGC | 52515 | 0.0 | 7.7597375 | 6 |
TATGCCG | 11750 | 0.0 | 7.5617056 | 46-47 |
CGTCTGA | 22575 | 0.0 | 7.275185 | 16-17 |
ACACGTC | 22740 | 0.0 | 7.202355 | 12-13 |
CACGTCT | 23090 | 0.0 | 7.0727744 | 14-15 |
CCAGTCA | 23135 | 0.0 | 7.0484977 | 26-27 |
CACACGT | 23370 | 0.0 | 6.9679775 | 12-13 |
TGCCGTC | 11320 | 0.0 | 6.852123 | 48-49 |
TCCAGTC | 23625 | 0.0 | 6.733302 | 24-25 |
ACTCCAG | 27635 | 0.0 | 6.411093 | 22-23 |
CAGTCAC | 25515 | 0.0 | 6.3541884 | 26-27 |
CTCCAGT | 26605 | 0.0 | 6.252897 | 24-25 |