Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946122.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38827706 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12545 | 0.0 | 12.363374 | 5 |
TATACTG | 18560 | 0.0 | 11.699242 | 5 |
CTAGTAC | 12340 | 0.0 | 11.69476 | 3 |
GTATAGA | 24225 | 0.0 | 11.683577 | 1 |
CTATACT | 19060 | 0.0 | 11.4928665 | 4 |
TCTATAC | 22905 | 0.0 | 11.205481 | 3 |
TAGGCTG | 10785 | 0.0 | 10.981815 | 5 |
TATACAG | 17360 | 0.0 | 10.91061 | 5 |
CATACAC | 108455 | 0.0 | 10.666701 | 3 |
CTAGGCT | 9895 | 0.0 | 10.498852 | 4 |
TAGTACT | 24035 | 0.0 | 10.365663 | 4 |
ACATGAC | 89695 | 0.0 | 10.342903 | 8 |
GTACTAG | 15350 | 0.0 | 10.2913885 | 1 |
GCTGTCC | 9640 | 0.0 | 10.2865305 | 8 |
GTATTAG | 21620 | 0.0 | 10.15557 | 1 |
ACACATG | 111075 | 0.0 | 10.125036 | 6 |
CATGACA | 92430 | 0.0 | 10.016389 | 9 |
TAGACAG | 12490 | 0.0 | 10.009513 | 5 |
GTACTAC | 14200 | 0.0 | 9.9289465 | 6 |
GTGTATG | 106085 | 0.0 | 9.874254 | 1 |