FastQCFastQC Report
Tue 15 Nov 2016
SRR1946173.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946173.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37937964
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGTAC137750.014.3583823
TATACCG135350.014.1231985
TACCGTG107050.013.6890537
CCGTGAG116750.012.7932339
TCTATAC242100.012.6910623
CTATACT194300.012.5977374
ACCGTGA145450.012.3355188
TAGTACT280500.012.2101874
TATACTG186600.012.1823375
ATACCGT128350.012.149126
GTACTAC160900.011.6179536
GTACTAG188950.011.5304891
GTATAGG133800.011.429861
CCTAGTA164150.011.3338332
CATACAC860400.010.9314733
GTATAGA264200.010.757661
ACATGAC716400.010.5817078
TAGGGTG88300.010.531775
ACACATG872200.010.468466
TATACAG163750.010.4117145