FastQCFastQC Report
Tue 15 Nov 2016
SRR1946191.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946191.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38466094
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG137650.014.54717355
TACCGTG100950.013.2658487
TCTATAC238600.012.7264523
ATACCGT120550.012.706836
CCGTGAG101800.012.4620769
TATACTG177900.012.2863335
CTAGGCT95100.011.4174124
ACCGTGA133800.011.2023178
CTAGTAC120400.011.0875893
TAGGCTG110850.010.9403015
GTACTAG166000.010.7382471
TATGAGC173550.010.71823294
CTATACC193650.010.7042764
GTCGCGC18950.010.6618498
CTATACT197950.010.61422354
CATACAC979450.010.3901283
GTATAGA251850.010.3646171
TATACAG172850.010.2793985
ACACATG977000.09.8977776
GTATAGG129250.09.8250661