FastQCFastQC Report
Tue 15 Nov 2016
SRR1946084.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946084.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40269370
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC60400.022.22190363
CGCCGTA60700.021.89755666
TATGCCG56100.021.23203863
GCCGTAT63800.020.7803267
CGGCATT74450.020.5772571
TGGTCGC72050.018.9310762
CGTATGC65800.018.48865561
ATGCCGT65300.017.991164
TGCCGTC68350.017.60058865
CCGTATC77350.017.59345468
GCCGTCT72450.016.46329366
GTATGCC73850.016.27995162
CGAGATC172300.015.651113518
CCGAGAT185550.014.7205117
AGCGTCG93600.014.65006530
GAGCGTC92850.014.61497729
CGTGTAG92700.014.38504935
CGTATCA96200.014.29181469
CCTGCTG114450.014.0058238
GCGTCGT98900.013.93769431