Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945829.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 62146468 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATGC | 55490 | 0.0 | 7.4232945 | 94-95 |
GTATGCC | 47075 | 0.0 | 7.338131 | 94-95 |
TATGCCG | 41225 | 0.0 | 7.321403 | 94-95 |
GCCGTCT | 31555 | 0.0 | 7.288354 | 94-95 |
TGCCGTC | 33345 | 0.0 | 7.2258725 | 94-95 |
ATGCCGT | 38325 | 0.0 | 6.737304 | 94-95 |
TCGTATG | 69225 | 0.0 | 6.6175804 | 94-95 |
CGCCGTA | 17060 | 0.0 | 5.9337792 | 94-95 |
GGTCGCC | 15000 | 0.0 | 5.8001375 | 94-95 |
CTCGTAT | 68210 | 0.0 | 5.6081095 | 94-95 |
GATCTCG | 106250 | 0.0 | 5.483833 | 94-95 |
CATCACG | 128260 | 0.0 | 5.3829603 | 94-95 |
TCACGAT | 114725 | 0.0 | 5.288141 | 94-95 |
CACGATC | 94330 | 0.0 | 5.2767353 | 94-95 |
CCGTCTT | 41420 | 0.0 | 5.2146077 | 94-95 |
ATCACGA | 128750 | 0.0 | 5.183121 | 94-95 |
TGGTCGC | 18200 | 0.0 | 5.0526543 | 92-93 |