FastQCFastQC Report
Tue 15 Nov 2016
SRR1946207.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946207.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23103230
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG73700.013.0729415
GTATAGA138550.012.4672321
CATACAC634700.012.1217993
TATACTG107550.012.0173635
TCTATAC140350.011.9213233
GGACCGT24550.011.8693036
ACATGAC517550.011.7235458
GTACTAG79400.011.67767051
ACACATG642100.011.5721546
TACCGTG56450.011.4894737
GTATATA335000.011.3521221
TACACTG65000.011.2797165
CACATGA626950.011.2520797
CATGACA534700.011.2332579
GTGTATG600850.011.23294451
CTATACT117550.011.1949534
TAATACT182850.011.0781994
TAGACAG71700.010.8811755
TCATACA703550.010.74854852
ATCATAC677000.010.7272351