FastQCFastQC Report
Tue 15 Nov 2016
SRR1946001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69898038
Sequences flagged as poor quality0
Sequence length100
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG276650.013.559993
GATCGGA344400.011.4662891
ATCGGAA373650.010.631132
AGAGCAC315600.010.4838298
GAGCACA319650.010.2770869
CGGAAGA418350.09.708684
GCACACG175800.09.03565710-11
ACGTCTG190750.08.17960814-15
GAAGAGC525150.07.75973756
TATGCCG117500.07.561705646-47
CGTCTGA225750.07.27518516-17
ACACGTC227400.07.20235512-13
CACGTCT230900.07.072774414-15
CCAGTCA231350.07.048497726-27
CACACGT233700.06.967977512-13
TGCCGTC113200.06.85212348-49
TCCAGTC236250.06.73330224-25
ACTCCAG276350.06.41109322-23
CAGTCAC255150.06.354188426-27
CTCCAGT266050.06.25289724-25