Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945891.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44227838 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 15460 | 0.0 | 18.363163 | 5 |
AGACCGC | 17885 | 0.0 | 17.18931 | 94 |
TACCGTG | 12265 | 0.0 | 16.972937 | 7 |
GTACTAG | 18000 | 0.0 | 16.178808 | 1 |
GTATAGA | 25395 | 0.0 | 16.00641 | 1 |
TCTATAC | 22735 | 0.0 | 15.858073 | 3 |
CCGTGAG | 13020 | 0.0 | 15.554961 | 9 |
ATACCGT | 13030 | 0.0 | 15.3637 | 6 |
CTATACT | 16800 | 0.0 | 14.465426 | 4 |
TATACTG | 17600 | 0.0 | 13.700131 | 5 |
CTAGTAC | 13550 | 0.0 | 13.390537 | 3 |
CATACAC | 119025 | 0.0 | 13.2101555 | 3 |
ACCGTGA | 17690 | 0.0 | 13.122587 | 8 |
TATACAG | 15065 | 0.0 | 13.103889 | 5 |
CTAGGCT | 9965 | 0.0 | 13.019125 | 4 |
TACTAGG | 19800 | 0.0 | 12.996266 | 2 |
ACACATG | 114205 | 0.0 | 12.986214 | 6 |
GTGTATG | 114975 | 0.0 | 12.83629 | 1 |
TAGTACT | 25420 | 0.0 | 12.759203 | 4 |
ACATGAC | 93915 | 0.0 | 12.749254 | 8 |