Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946138.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34061602 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 11590 | 0.0 | 12.330783 | 5 |
TATACTG | 15805 | 0.0 | 12.195226 | 5 |
TCTATAC | 20425 | 0.0 | 11.787159 | 3 |
CTATACT | 17330 | 0.0 | 11.423122 | 4 |
TAGGCTG | 10780 | 0.0 | 11.076829 | 5 |
GTATAGA | 21515 | 0.0 | 10.908005 | 1 |
CCGTGAG | 7755 | 0.0 | 10.544277 | 9 |
CATACAC | 87925 | 0.0 | 10.439236 | 3 |
TACCGTG | 8920 | 0.0 | 10.379252 | 7 |
GCTGTCC | 9055 | 0.0 | 10.2241335 | 8 |
CTAGGCT | 9205 | 0.0 | 10.114459 | 4 |
CTGTCCC | 11275 | 0.0 | 10.003318 | 9 |
CTAGTAC | 10315 | 0.0 | 9.983346 | 3 |
GTATATA | 46915 | 0.0 | 9.9445715 | 1 |
TATACAG | 14615 | 0.0 | 9.9394 | 5 |
ACATGAC | 71800 | 0.0 | 9.830922 | 8 |
ACCGTGA | 10770 | 0.0 | 9.686926 | 8 |
ACACATG | 92670 | 0.0 | 9.656404 | 6 |
ATACCGT | 9545 | 0.0 | 9.650899 | 6 |
GTCGCGC | 1810 | 0.0 | 9.606648 | 8 |