FastQCFastQC Report
Wed 16 Nov 2016
SRR1945864.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945864.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64776060
Sequences flagged as poor quality0
Sequence length101
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG703350.07.77466494-95
GGTCGCC841650.07.766652694-95
ATGCCGT653600.07.62171394-95
CGCCGTA623700.07.61781794-95
CGTATGC857150.07.59019594-95
TGCCGTC591600.07.561568794-95
GTATGCC789100.07.531612494-95
GCCGTCT550050.07.480929494-95
GCCGTAT599100.07.427273894-95
CCGTATC562150.07.27766894-95
GTCGCCG852250.07.121196794-95
TGGTCGC908900.07.00128794-95
TCGCCGT769350.06.87314494-95
TCGTATG1001100.06.75494394-95
CGTATCA561200.06.723035394-95
CCGTCTT628200.06.368851794-95
CTCGTAT1047200.06.18775494-95
GTGGTCG1068000.06.130133692-93
GGTGGTC1122500.05.762689692-93
TCTCGTA1176850.05.64587292-93