Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946038.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 62405408 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 2475 | 0.0 | 15.36492 | 8 |
TATACCG | 22975 | 0.0 | 15.325306 | 5 |
TATACTG | 32935 | 0.0 | 14.453856 | 5 |
CTATACT | 33230 | 0.0 | 13.974195 | 4 |
TCTATAC | 43535 | 0.0 | 13.675448 | 3 |
TACCGTG | 18335 | 0.0 | 13.571091 | 7 |
CTAGTAC | 23945 | 0.0 | 13.431873 | 3 |
CATACAC | 149320 | 0.0 | 13.046268 | 3 |
ATACCGT | 21495 | 0.0 | 12.886347 | 6 |
GTATAGA | 44225 | 0.0 | 12.696438 | 1 |
TATACAG | 28685 | 0.0 | 12.5528965 | 5 |
CCGTGAG | 17215 | 0.0 | 12.517746 | 9 |
ACATGAC | 114415 | 0.0 | 12.437223 | 8 |
ACACATG | 147980 | 0.0 | 12.347671 | 6 |
GTATAGG | 22185 | 0.0 | 12.09368 | 1 |
CATGACA | 115615 | 0.0 | 12.064489 | 9 |
CACATGA | 144225 | 0.0 | 11.914074 | 7 |
GTACTAG | 28335 | 0.0 | 11.873305 | 1 |
ACCGTGA | 22285 | 0.0 | 11.755526 | 8 |
TCGCGCG | 3475 | 0.0 | 11.75398 | 9 |