Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946022.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 86421230 |
Sequences flagged as poor quality | 0 |
Sequence length | 110 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 89386 | 0.10343060379955249 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTTCAGC | 74155 | 0.0 | 16.744835 | 3 |
CAGCAGG | 76120 | 0.0 | 16.408218 | 6 |
CGGTTCA | 78685 | 0.0 | 16.049337 | 1 |
CAGGAAT | 82405 | 0.0 | 15.326148 | 9 |
GGTTCAG | 87795 | 0.0 | 14.3325615 | 2 |
GCAGGAA | 88060 | 0.0 | 14.324819 | 8 |
GAGACCG | 41590 | 0.0 | 13.5005665 | 50-51 |
TCAGCAG | 93900 | 0.0 | 13.489072 | 5 |
CGAGATC | 53960 | 0.0 | 13.369555 | 18-19 |
TATGCCG | 18125 | 0.0 | 13.0813 | 62-63 |
CCGAGAT | 53675 | 0.0 | 12.975045 | 16-17 |
CGAGACC | 42825 | 0.0 | 12.873909 | 48-49 |
AGCAGGA | 99560 | 0.0 | 12.738007 | 7 |
TTCAGCA | 105710 | 0.0 | 12.08513 | 4 |
CGTATGC | 21760 | 0.0 | 11.897505 | 60-61 |
GACCGAT | 39090 | 0.0 | 11.665484 | 52-53 |
AATGCCG | 55085 | 0.0 | 11.41156 | 12-13 |
AGACCGA | 48685 | 0.0 | 11.159507 | 50-51 |
CCGGCAT | 13345 | 0.0 | 11.094056 | 1 |
TGCCGAG | 56385 | 0.0 | 11.084128 | 14-15 |