FastQCFastQC Report
Tue 15 Nov 2016
SRR1946185.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946185.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55695990
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC263500.014.54771294
TATACCG176500.011.851515
TATACTG267400.011.6197945
CTAGTAC189450.011.4137683
GTATAGG191750.011.08639051
CATACAC1916300.010.9871073
GTATAGA355600.010.8981441
ACATGAC1545350.010.8114288
TCTATAC341700.010.7303883
ACACATG1894400.010.6725676
CTATACT290200.010.593314
CACATGA1849850.010.457267
TAGACCG128350.010.4377615
CATGACA1585000.010.3572059
GACCGTG80500.010.3312047
GTACTAG223700.010.322921
TAGTACT353200.010.0346444
ATACCGT162250.010.0198366
TCATACA2070900.010.0195182
TATACAG258100.09.9986815