FastQCFastQC Report
Tue 15 Nov 2016
SRR1945981.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945981.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39408300
Sequences flagged as poor quality0
Sequence length76
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5932941.5055051854558557No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC4336911.1005067460408087No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG71450.018.93570163
TGCCGTC79900.016.72007865
ATGCCGT78650.016.7158764
CGTATGC84650.016.5955461
CGCCGTA68000.016.56439656
GTATGCC84650.016.55687362
GGTCGCC80850.016.00608853
CGGCATT68700.015.9965911
GCCGTAT70950.015.94088457
CGAGATC221400.015.88771518
GCCGTCT82150.014.940766
CCGAGAT248400.014.44456717
GAGACCG184200.013.85796850
CCGTATC83000.013.75304958
TCGTATG113900.012.88394160
TGGTCGC100150.012.78092152
CGAGACC199400.012.67846749
AGACCGA198750.011.99991951
CGTATCA95550.011.54548859
GACCGAT187500.011.45246952