Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946251.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24413240 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1105 | 0.0 | 16.159946 | 8 |
TATACCG | 7950 | 0.0 | 15.901186 | 5 |
CTATACT | 12600 | 0.0 | 14.138601 | 4 |
GTATAGA | 16360 | 0.0 | 14.126057 | 1 |
TCTATAC | 15395 | 0.0 | 13.9837475 | 3 |
TATACTG | 12235 | 0.0 | 13.865886 | 5 |
ATACCGT | 7190 | 0.0 | 13.398357 | 6 |
CATACAC | 55185 | 0.0 | 13.28744 | 3 |
GTGTATG | 53300 | 0.0 | 13.148924 | 1 |
TACCGTG | 6520 | 0.0 | 12.828999 | 7 |
ACATGAC | 45195 | 0.0 | 12.747314 | 8 |
ACACATG | 54170 | 0.0 | 12.5700245 | 6 |
TAGTACT | 12900 | 0.0 | 12.498049 | 4 |
CATGACA | 46595 | 0.0 | 12.404595 | 9 |
GTATATA | 37655 | 0.0 | 12.23722 | 1 |
TATACTA | 22295 | 0.0 | 12.162216 | 5 |
TATACAG | 11635 | 0.0 | 12.076725 | 5 |
GTATAGG | 8905 | 0.0 | 12.051017 | 1 |
CTATACC | 12190 | 0.0 | 11.876399 | 4 |
CACATGA | 52360 | 0.0 | 11.873549 | 7 |