Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946052.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 51394202 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 16090 | 0.0 | 15.435102 | 5 |
TATACTG | 24810 | 0.0 | 15.251698 | 5 |
CATACAC | 145315 | 0.0 | 13.703207 | 3 |
CTATACT | 26110 | 0.0 | 13.559037 | 4 |
TATACAG | 23685 | 0.0 | 13.22094 | 5 |
ACATGAC | 121115 | 0.0 | 13.187494 | 8 |
TCTATAC | 30080 | 0.0 | 13.080689 | 3 |
ACACATG | 152795 | 0.0 | 12.975709 | 6 |
CTAGGCT | 13670 | 0.0 | 12.880334 | 4 |
CACATGA | 146985 | 0.0 | 12.750977 | 7 |
CATGACA | 126085 | 0.0 | 12.570859 | 9 |
TCATACA | 159450 | 0.0 | 12.394172 | 2 |
GCTGTCC | 14065 | 0.0 | 12.250457 | 8 |
TAGGCTG | 15925 | 0.0 | 12.027923 | 5 |
GTATATA | 71775 | 0.0 | 11.948035 | 1 |
CTGTCCC | 17230 | 0.0 | 11.907542 | 9 |
GTGTATG | 137880 | 0.0 | 11.887268 | 1 |
ATCATAC | 159765 | 0.0 | 11.841288 | 1 |
CTAGTAC | 16210 | 0.0 | 11.702072 | 3 |
GTATAGA | 32720 | 0.0 | 11.618284 | 1 |