Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946096.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 65359878 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 7235 | 0.0 | 8.901708 | 63 |
CGTATGC | 8035 | 0.0 | 8.015384 | 61 |
CGGCATT | 9535 | 0.0 | 7.8708 | 1 |
ATGCCGT | 8210 | 0.0 | 7.460918 | 64 |
AATGCCG | 13015 | 0.0 | 6.9969473 | 13 |
TGCCGTC | 8155 | 0.0 | 6.9533873 | 65 |
GTATGCC | 9155 | 0.0 | 6.920422 | 62 |
CCGAGAT | 22185 | 0.0 | 6.852132 | 17 |
GAGACCG | 12690 | 0.0 | 6.728087 | 50 |
CGAGATC | 22220 | 0.0 | 6.6138144 | 18 |
TGCCGAG | 14380 | 0.0 | 6.552185 | 15 |
CGAGACC | 13440 | 0.0 | 6.196201 | 49 |
GCCGTCT | 8815 | 0.0 | 5.996046 | 66 |
GACCGAT | 14300 | 0.0 | 5.703283 | 52 |
ATGCCGA | 16430 | 0.0 | 5.6492057 | 14 |
GGTCGCC | 6165 | 0.0 | 5.507224 | 63 |
AGAGCGG | 19065 | 0.0 | 5.3055186 | 28 |
AGACCGA | 17770 | 0.0 | 5.23985 | 51 |
GGGCGCC | 3635 | 0.0 | 5.199761 | 63 |
GAGCGGT | 16990 | 0.0 | 5.1915126 | 29 |