Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946257.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33857752 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 13310 | 0.0 | 18.08054 | 5 |
CCGTGAG | 11420 | 0.0 | 16.82834 | 9 |
TACCGTG | 11185 | 0.0 | 16.090445 | 7 |
GTCGCGC | 1715 | 0.0 | 15.891678 | 8 |
ATACCGT | 11260 | 0.0 | 15.733298 | 6 |
TCTATAC | 20875 | 0.0 | 15.402031 | 3 |
ACCGTGA | 14210 | 0.0 | 14.649256 | 8 |
CTAGTAC | 13735 | 0.0 | 13.278572 | 3 |
GTACTAG | 18265 | 0.0 | 13.059067 | 1 |
GTATAGA | 22735 | 0.0 | 12.995367 | 1 |
TATACTG | 15635 | 0.0 | 12.746397 | 5 |
CTATACC | 18240 | 0.0 | 12.653335 | 4 |
CATACAC | 102115 | 0.0 | 12.046545 | 3 |
CTATACT | 16055 | 0.0 | 12.003886 | 4 |
TAGACCG | 9020 | 0.0 | 11.985075 | 5 |
TAGTACT | 26055 | 0.0 | 11.961091 | 4 |
ACATGAC | 80315 | 0.0 | 11.912065 | 8 |
GTGTATG | 95830 | 0.0 | 11.856036 | 1 |
ACACATG | 103760 | 0.0 | 11.702519 | 6 |
AGACCGT | 9145 | 0.0 | 11.561538 | 6 |