FastQCFastQC Report
Tue 15 Nov 2016
SRR1946088.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946088.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54999574
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG58500.012.33171963
CGCCGTA66700.012.13189466
GGTCGCC63500.012.07765663
CGGCATT85550.011.3293791
GCCGTAT77150.010.8071667
ATGCCGT70450.010.537477564
CGTATGC71300.010.51685461
TGCCGTC74250.09.81274165
GAGCGTC85400.09.79397829
AGCGTCG86650.09.65398430
TGGTCGC82300.09.49175962
GTATGCC81950.09.40405962
CGAGATC190800.09.29294618
GCCGTCT81800.09.07872966
CGTGTAG91150.08.98835935
CCGTATC93600.08.87032568
GCGTCGT94150.08.66356731
AAGAGCG201500.08.4735927
GAGATCG216950.08.04569419
AATGCCG105750.08.002213