FastQCFastQC Report
Wed 16 Nov 2016
SRR1945950.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945950.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88170350
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG477050.011.2642744
AGAGCGT276700.010.2945059
GGTCGCC120500.010.15077144-45
CCGTACG134600.09.37659534-35
GATCGGA621200.09.0309092
CGGAAGA643600.08.538585
CGCCGTA141950.08.51485346-47
AAGAGCG345200.08.4017398
ATCGGAA687300.08.22868253
GCACACG176200.08.01143912-13
GAGCGTC178900.07.98037610-11
TGGTCGC154250.07.72375742-43
AGCGTCG190350.07.475946410-11
CGTACGT172750.07.4328134-35
TGCCGTC125300.07.30494550-51
GAAGAGC800050.07.1737527
TATGCCG130300.07.15000448-49
GCGTCGT201450.07.109323512-13
AGAGCAC409700.06.86068779
AGATCGG877300.06.7246141