FastQCFastQC Report
Tue 15 Nov 2016
SRR1946218.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946218.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19595166
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG83550.019.068125
TACCGTG64150.017.8737957
ATACCGT77600.017.7431896
TCTATAC140200.017.4000933
CCGTGAG59600.016.951679
ACCGTGA74500.015.8951878
CTAGTAC76650.015.6985673
CTATACT104150.015.5249924
TATACTG96800.015.1472525
GTATAGA149800.014.8949411
CTATACC116050.014.41906454
TAGTACT148300.014.1676764
CATACAC494650.014.1396013
ACATGAC429250.014.0126758
ACACATG526100.013.5411866
CATGACA444150.013.5002349
GTACTAC88150.013.3273416
CACATGA508400.013.2823487
GTGTATG470850.013.0266911
CCTAGTA89050.012.6680442