FastQCFastQC Report
Tue 15 Nov 2016
SRR1946079.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946079.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79764720
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT115650.07.9737221
GAGACCG163900.07.57517450
AATGCCG167900.07.46312344
CGAGATC272200.07.35462918
TATGCCG77900.07.306216263
GAGCGGT177600.07.13403829
CGAGACC175700.07.062664549
AGAGCGG207550.06.91131728
GAGATCG318050.06.366993419
TGCCGAG209950.06.289966615
GCGGTTC207250.06.164027731
ATGCCGT99600.06.13185864
CCGAGAT358000.06.060280317
TCGGAAG342450.05.98220323
AAGAGCG332250.05.82988827
CGTATGC94900.05.76193261
GGTCGCC87500.05.70158163
AGCGGTT227750.05.655130
TGCCGTC103200.05.540950365
ATGCCGA242500.05.52010145