Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946137.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 29492456 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 14260 | 0.0 | 13.944501 | 5 |
TATACCG | 11450 | 0.0 | 13.671648 | 5 |
TCTATAC | 19975 | 0.0 | 13.087489 | 3 |
CTATACT | 15595 | 0.0 | 12.753323 | 4 |
ATACCGT | 10065 | 0.0 | 12.420893 | 6 |
TACCGTG | 9195 | 0.0 | 12.062432 | 7 |
CCGTGAG | 8070 | 0.0 | 11.705137 | 9 |
ACATGAC | 74880 | 0.0 | 11.152587 | 8 |
ACCGTGA | 10500 | 0.0 | 11.144588 | 8 |
CATACAC | 93320 | 0.0 | 11.139926 | 3 |
GCCGTGC | 3105 | 0.0 | 11.048804 | 8 |
TAGGCTG | 8630 | 0.0 | 11.003294 | 5 |
TATACAG | 13745 | 0.0 | 10.978485 | 5 |
GTATAGA | 20385 | 0.0 | 10.9581175 | 1 |
ACACATG | 91875 | 0.0 | 10.890887 | 6 |
CATGACA | 76315 | 0.0 | 10.801242 | 9 |
GTATAGG | 11350 | 0.0 | 10.648546 | 1 |
CACATGA | 89605 | 0.0 | 10.47419 | 7 |
CTAGTAC | 10020 | 0.0 | 10.464187 | 3 |
GTATATA | 43000 | 0.0 | 10.422633 | 1 |