FastQCFastQC Report
Tue 15 Nov 2016
SRR1946159.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946159.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35165394
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGGCG31250.016.72490794
TATGAGC159200.013.66437194
CATACAC974450.010.7153333
TATACCG104650.010.5483055
ACATGAC728950.010.5166728
GTATAGG113750.010.5107891
CTATACT189900.010.3448284
ACACATG953350.010.2782186
TATACTG168800.010.1850395
GTATATA498700.010.0900041
CATGACA731750.010.0399279
GTCGCGC15050.09.9877898
CACATGA934700.09.9204387
GTGTATG926750.09.7265581
CCAAAGC256650.09.68686894
GTATAGA209050.09.6145881
TCATACA1074150.09.5744422
TATACAG159950.09.5151325
TCTATAC213350.09.5150773
ATCATAC1075700.09.3511791