Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946193.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40677076 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGAGC | 18375 | 0.0 | 13.891071 | 94 |
TATACCG | 11770 | 0.0 | 12.819741 | 5 |
TATACTG | 19610 | 0.0 | 12.608367 | 5 |
TCTATAC | 25315 | 0.0 | 11.271126 | 3 |
CATACAC | 124155 | 0.0 | 11.237152 | 3 |
GTATAGG | 12845 | 0.0 | 10.947737 | 1 |
ACACATG | 118190 | 0.0 | 10.87302 | 6 |
ACATGAC | 93820 | 0.0 | 10.817305 | 8 |
GTATAGA | 26430 | 0.0 | 10.7657795 | 1 |
CTATACT | 20800 | 0.0 | 10.73432 | 4 |
CATGACA | 94930 | 0.0 | 10.497804 | 9 |
GTACTAG | 14305 | 0.0 | 10.487939 | 1 |
CTAGTAC | 11280 | 0.0 | 10.376403 | 3 |
TACCGTG | 8765 | 0.0 | 10.346358 | 7 |
CACATGA | 114440 | 0.0 | 10.342665 | 7 |
CCGTGAG | 8930 | 0.0 | 10.312545 | 9 |
TCATACA | 136285 | 0.0 | 10.227175 | 2 |
TAGTACT | 21640 | 0.0 | 10.056989 | 4 |
ATCATAC | 132965 | 0.0 | 9.981756 | 1 |
ACCGTGA | 11385 | 0.0 | 9.904645 | 8 |