FastQCFastQC Report
Wed 16 Nov 2016
SRR1945777.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945777.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58644130
Sequences flagged as poor quality0
Sequence length101
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTCT535450.08.55817394-95
CGCCGTA658450.08.39826194-95
TGCCGTC573200.08.37563394-95
CGTATGC871700.08.17685694-95
TATGCCG699200.08.17367694-95
GCCGTAT634100.08.09544394-95
ATGCCGT638600.08.07557794-95
GTATGCC803350.08.07159994-95
GTCGCCG880200.08.0682294-95
CCGTATC584650.08.0572894-95
GGTCGCC904300.07.966099794-95
TCGCCGT815000.07.56583894-95
CGTATCA573900.07.513154594-95
CCGTCTT594550.07.156361694-95
TCGTATG1017350.07.148571594-95
TGGTCGC965300.07.12401892-93
CTTCTGC597250.06.69863794-95
CTCGTAT1043300.06.584578592-93
GTGGTCG1105100.06.446269592-93
CGTCTTC675050.06.17347992-93