Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945967.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 45119016 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCAGCC | 15055 | 0.0 | 10.645998 | 2 |
GGCTGAT | 14500 | 0.0 | 9.605428 | 2 |
GCCGTAT | 11060 | 0.0 | 9.59446 | 57 |
CGAGATC | 19575 | 0.0 | 9.422422 | 18 |
GGTCGCC | 14380 | 0.0 | 9.323882 | 53 |
CGCCGTA | 11275 | 0.0 | 9.130616 | 56 |
CGTGTAG | 21370 | 0.0 | 8.747764 | 25 |
GTCGTGT | 23245 | 0.0 | 8.329706 | 23 |
GAGCGTC | 24145 | 0.0 | 8.234962 | 19 |
CCGTATC | 12440 | 0.0 | 8.192769 | 58 |
AGCGTCG | 24820 | 0.0 | 8.082181 | 20 |
GTAGATC | 23465 | 0.0 | 8.051217 | 41 |
TCGTGTA | 23970 | 0.0 | 7.9893765 | 24 |
GCGTCGT | 24760 | 0.0 | 7.946967 | 21 |
TCAGCCA | 21380 | 0.0 | 7.8726196 | 3 |
GAGTGTA | 23550 | 0.0 | 7.814835 | 37 |
CAGCCAA | 26820 | 0.0 | 7.736921 | 4 |
TGGTCGC | 16880 | 0.0 | 7.6933837 | 52 |
CCAAGAT | 26215 | 0.0 | 7.5517645 | 7 |
TAGATCT | 25540 | 0.0 | 7.465164 | 42 |