Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946021.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 73119308 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 178672 | 0.2443567983438793 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGGCAT | 12545 | 0.0 | 37.61691 | 1 |
CGGCATT | 16365 | 0.0 | 29.965456 | 2 |
GGTCGCC | 16495 | 0.0 | 29.82002 | 53 |
GGCTGAT | 27915 | 0.0 | 29.073935 | 2 |
CCGAGAT | 58055 | 0.0 | 28.574059 | 17 |
ATCAGCC | 27905 | 0.0 | 27.080261 | 2 |
CGAGATC | 61145 | 0.0 | 27.054878 | 18 |
CGCCGTA | 11930 | 0.0 | 25.830727 | 56 |
TGGTCGC | 18340 | 0.0 | 25.697582 | 52 |
CTCGGTG | 28790 | 0.0 | 25.01451 | 47 |
CAGCCAA | 39030 | 0.0 | 24.797321 | 4 |
GCCGTAT | 12755 | 0.0 | 24.351864 | 57 |
TCGGTGG | 30445 | 0.0 | 24.17216 | 48 |
TGGCTGA | 35325 | 0.0 | 23.31866 | 1 |
GCCAAGA | 41960 | 0.0 | 23.091324 | 6 |
GTCGCCG | 21130 | 0.0 | 23.028801 | 54 |
GGCATTC | 23030 | 0.0 | 22.886848 | 3 |
GCGGTTC | 108920 | 0.0 | 22.58731 | 11 |
GAGCGGT | 111750 | 0.0 | 22.352718 | 9 |
CGTGTAG | 39295 | 0.0 | 21.977634 | 25 |