FastQCFastQC Report
Tue 15 Nov 2016
SRR1946213.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946213.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16449222
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC8550.021.4376938
ATACCGT60550.020.3360546
TATACCG71150.019.8825075
CCGTGAG50050.019.813359
TACCGTG61050.017.8600187
ACCGTGA66550.017.3726718
TCTATAC112700.017.3484043
TCGCGCG13350.016.546129
TATACTG77150.015.777695
GTATAGA116550.014.9820991
CTATACT80050.014.853844
CATACAC483950.014.5188033
ACATGAC416550.014.3854228
ACACATG484250.014.0047796
CTATACC93900.013.9142174
CACATGA467800.013.7738957
CATGACA430800.013.7132099
GTGTATG457500.013.3637721
TCATACA534600.013.0379772
CTAGTAC62250.012.9106123