Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946184.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 47364216 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGAGC | 22080 | 0.0 | 14.86627 | 94 |
TATACTG | 22360 | 0.0 | 12.529895 | 5 |
TATACCG | 15800 | 0.0 | 12.257815 | 5 |
CTATACT | 24255 | 0.0 | 11.473263 | 4 |
CATACAC | 152285 | 0.0 | 10.912172 | 3 |
TCTATAC | 29040 | 0.0 | 10.894251 | 3 |
ATACCGT | 14485 | 0.0 | 10.7377405 | 6 |
GTATAGA | 30740 | 0.0 | 10.618788 | 1 |
ACATGAC | 122670 | 0.0 | 10.583244 | 8 |
ACACATG | 151795 | 0.0 | 10.497206 | 6 |
TAGGCTG | 14140 | 0.0 | 10.472107 | 5 |
CACATGA | 145870 | 0.0 | 10.121545 | 7 |
GTATATA | 65455 | 0.0 | 10.117639 | 1 |
CATGACA | 127505 | 0.0 | 10.078786 | 9 |
GTGTATG | 143125 | 0.0 | 10.02971 | 1 |
CTAGGCT | 12445 | 0.0 | 9.858529 | 4 |
TATACAG | 21210 | 0.0 | 9.818294 | 5 |
ATCATAC | 160480 | 0.0 | 9.812594 | 1 |
TCATACA | 167675 | 0.0 | 9.798832 | 2 |
GTACTAG | 16905 | 0.0 | 9.710232 | 1 |