FastQCFastQC Report
Tue 15 Nov 2016
SRR1946080.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946080.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69718088
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG1877180.26925293763076236Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT911650.040.7644429
AATGCCG763700.039.88893524
GCGGTTC913200.039.77718711
GAGACCG352400.039.50641361
AGAGCGG960550.039.2427868
CGAGACC355500.039.017760
AGCGGTT951550.038.9489210
GTTCAGC930450.038.52895414
CAGCAGG936650.038.0039517
CGGTTCA993650.036.5539612
TGCCGAG766400.036.3815626
GGTTCAG1008150.035.91928513
GAATGCC869850.035.65911523
ATGCCGA805800.035.4283225
GGAATGC890950.035.22413622
GCAGGAA954850.034.8296419
CAGGAAT925750.034.77634420
CGAGATC437600.034.7328729
AAGAGCG1125200.034.426177
TCGGAAG1148850.033.9177553