FastQCFastQC Report
Tue 15 Nov 2016
SRR1946099.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946099.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81838632
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC141850.020.77446653
CGCCGTA119050.020.16734556
GCCGTAT128950.018.72822657
TGGTCGC172350.016.4075452
CCGTATC155650.015.33781858
TATGCCG115050.014.66248353
CGAGACC256700.013.40095539
GAGACCG256650.013.23995740
CGTATGC138850.013.10664751
CTCGGTG247350.013.071691547
TCGGTGG250250.012.96231248
AATGCCG277150.012.44944434
GTCGCCG244900.012.34754354
GTATGCC147250.012.26415952
ATCAGCC248350.012.0618732
CGTGTAG288800.012.03535525
GACCGAT281150.011.60068242
CGTATCA203300.011.5375759
GGTGGTC261650.011.30219750
ATGCCGT129800.011.18997254