FastQCFastQC Report
Tue 15 Nov 2016
SRR1946244.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946244.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28465238
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG99300.015.1912395
TATACTG134700.014.2689875
GTGTATG569500.013.0975671
GTCGCGC14000.013.0900938
CTATACT142550.012.958264
CATACAC588050.012.9166073
TCTATAC172050.012.4575193
ATACCGT82850.012.1944226
TATACAG129350.012.0617155
ACACATG583450.012.0085156
TAGTACT161750.012.0012674
GTATATA408100.011.8313921
GTATAGA184900.011.5805591
ACATGAC467950.011.5479418
GTACTAG102150.011.517461
GATTGAG578650.011.4420417
GTGCTAG44850.011.4371831
CACATGA552500.011.3627287
TCATACA659850.011.1786242
TATACTA253100.011.1774255