FastQCFastQC Report
Tue 15 Nov 2016
SRR1946045.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946045.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28557200
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG104050.017.9322195
TACCGTG83700.017.5102217
CCGTGAG77050.017.1987369
ATACCGT92800.016.3533846
TCTATAC172800.015.29435353
ACCGTGA103950.014.4605548
TATACTG117900.013.0352555
CTATACC142300.012.8222394
CTATACT133450.012.3335054
CTAGGCT72050.012.1399254
GTCGCGC13600.011.7435518
TAGGCTG80400.011.1651075
CTAGTAC85050.011.058453
TAGTACT164150.010.6571014
GTATAGA189600.010.548621
GTGTATG462250.010.2211991
TATAGTG131400.010.0149375
CATACAC476000.09.93873
TATACAG113650.09.9249295
GTGCTAG43850.09.7660021