Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946240.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20668168 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 6605 | 0.0 | 16.079613 | 5 |
TATACTG | 10345 | 0.0 | 14.581914 | 5 |
TCTATAC | 13200 | 0.0 | 14.100612 | 3 |
CATACAC | 50010 | 0.0 | 13.975611 | 3 |
TATACAG | 9385 | 0.0 | 13.720069 | 5 |
CTATACT | 11085 | 0.0 | 13.48367 | 4 |
GTGTATG | 48700 | 0.0 | 13.311674 | 1 |
TACCGTG | 5045 | 0.0 | 13.226472 | 7 |
ACACATG | 48905 | 0.0 | 13.164144 | 6 |
GTATATA | 29735 | 0.0 | 12.998789 | 1 |
GTATAGG | 6995 | 0.0 | 12.989645 | 1 |
GTATAGA | 13970 | 0.0 | 12.873441 | 1 |
ACATGAC | 37835 | 0.0 | 12.829782 | 8 |
CATGACA | 38475 | 0.0 | 12.567454 | 9 |
TCATACA | 55540 | 0.0 | 12.262505 | 2 |
CTAGTAC | 6210 | 0.0 | 12.261402 | 3 |
ACTGTGC | 3400 | 0.0 | 12.024113 | 8 |
CCGTGAG | 4540 | 0.0 | 12.006398 | 9 |
GTACTAG | 6910 | 0.0 | 11.991191 | 1 |
TAGTACT | 12250 | 0.0 | 11.971131 | 4 |