Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946045.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28557200 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10405 | 0.0 | 17.932219 | 5 |
TACCGTG | 8370 | 0.0 | 17.510221 | 7 |
CCGTGAG | 7705 | 0.0 | 17.198736 | 9 |
ATACCGT | 9280 | 0.0 | 16.353384 | 6 |
TCTATAC | 17280 | 0.0 | 15.2943535 | 3 |
ACCGTGA | 10395 | 0.0 | 14.460554 | 8 |
TATACTG | 11790 | 0.0 | 13.035255 | 5 |
CTATACC | 14230 | 0.0 | 12.822239 | 4 |
CTATACT | 13345 | 0.0 | 12.333505 | 4 |
CTAGGCT | 7205 | 0.0 | 12.139925 | 4 |
GTCGCGC | 1360 | 0.0 | 11.743551 | 8 |
TAGGCTG | 8040 | 0.0 | 11.165107 | 5 |
CTAGTAC | 8505 | 0.0 | 11.05845 | 3 |
TAGTACT | 16415 | 0.0 | 10.657101 | 4 |
GTATAGA | 18960 | 0.0 | 10.54862 | 1 |
GTGTATG | 46225 | 0.0 | 10.221199 | 1 |
TATAGTG | 13140 | 0.0 | 10.014937 | 5 |
CATACAC | 47600 | 0.0 | 9.9387 | 3 |
TATACAG | 11365 | 0.0 | 9.924929 | 5 |
GTGCTAG | 4385 | 0.0 | 9.766002 | 1 |