FastQCFastQC Report
Tue 15 Nov 2016
SRR1946023.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946023.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28612512
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC11350.018.5525768
TATACTG149250.015.120375
CTATACT155200.014.6010264
TATACCG93650.014.4983955
CTGAGCG88300.014.06450594
TCGCGCG16650.013.2084139
CATACAC688550.013.1305183
TCTATAC186250.012.9965873
CCGTGCG17650.012.9902769
GAGCGCG17450.012.8739197
TAGGCTG88500.012.5910925
TATACAG134550.012.5618395
ACACATG684700.012.2559986
ACATGAC583450.012.25482758
TGAGCGG91500.012.13854394
GTATTAG183300.012.11280251
GTATAGG108200.011.9484221
CATGACA585500.011.9156519
CTAGTAC85200.011.8699593
ACTGTGC42800.011.807768