FastQCFastQC Report
Tue 15 Nov 2016
SRR1946215.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946215.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24467522
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG92950.019.163555
ATACCGT80950.017.0112766
CCGTGAG69650.016.802139
TACCGTG74800.016.0851277
ACCGTGA91550.015.2469948
TCTATAC160200.014.9328043
CTAGTAC88550.014.5958793
GTATAGA171550.014.3208541
ACATGAC610650.014.2154518
TATACTG110450.014.1698295
CATACAC757700.014.0493763
CTATACT122650.013.7183414
ACACATG765700.013.6877586
CATGACA633850.013.6728979
GTGTATG702350.013.4487821
CACATGA744900.013.3380747
TAGTACT176500.013.2874594
CTATACC132150.012.7321574
TCATACA833400.012.7225562
GTCGCGC14900.012.6171098