FastQCFastQC Report
Tue 15 Nov 2016
SRR1945912.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945912.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19763532
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG182850.07.428906494-95
CGGAAGA200300.06.6157294-95
GATCGGA240500.06.112225594-95
ATCGGAA226000.05.989495394-95
GCACACG41000.05.734230592-93
GAGCGTC51250.05.56046694-95
TAGATCG114800.05.337054794-95
AAGAGCG103050.05.04684594-95