Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946157.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 32828174 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGAGC | 15375 | 0.0 | 16.967878 | 94 |
GTCGCGC | 2375 | 0.0 | 13.844441 | 8 |
TATACCG | 12890 | 0.0 | 12.899931 | 5 |
TATACTG | 15325 | 0.0 | 12.474726 | 5 |
CATACAC | 97965 | 0.0 | 11.556184 | 3 |
TAGACTG | 8130 | 0.0 | 11.555174 | 5 |
TCTATAC | 20700 | 0.0 | 11.510288 | 3 |
CTATACT | 16795 | 0.0 | 11.445576 | 4 |
ACATGAC | 81795 | 0.0 | 11.387726 | 8 |
ATACCGT | 10735 | 0.0 | 11.332823 | 6 |
ACACATG | 95835 | 0.0 | 11.282921 | 6 |
TAGGCTG | 10730 | 0.0 | 11.250464 | 5 |
GTATAGA | 21645 | 0.0 | 11.245948 | 1 |
TACCGTG | 10665 | 0.0 | 11.098902 | 7 |
CACATGA | 92175 | 0.0 | 11.073552 | 7 |
TCGCGCG | 3145 | 0.0 | 11.052336 | 9 |
TATACAG | 14385 | 0.0 | 10.906204 | 5 |
GTGTATG | 91950 | 0.0 | 10.865676 | 1 |
CATGACA | 85525 | 0.0 | 10.819724 | 9 |
CCAAAGC | 25415 | 0.0 | 10.728064 | 94 |