FastQCFastQC Report
Tue 15 Nov 2016
SRR1945940.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945940.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22389454
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG83300.016.2513735
CCGTGAG56350.015.262829
TATACTG113150.014.8305175
TACCGTG59200.014.6874717
ATACCGT71850.014.1299776
TCTATAC146650.014.1074363
ACCGTGA73650.013.7835958
CTAGTAC73950.012.97088053
GTATAGA157450.012.8572221
CTATACT118900.012.8518144
GCCGTGC23850.012.8087428
TAGTACT144300.012.7726994
CATACAC541850.012.7473583
GTGTATG514650.012.1938121
GAGCGCG12400.012.1290087
GTCGCGC9750.012.0508278
TATACAG104250.012.03865055
GTATAGG78850.012.0009531
CCGTGCG13800.011.9197349
GTATATA336600.011.8605021