Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946214.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18858974 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 21061 | 0.11167627676882104 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 6560 | 0.0 | 17.409424 | 5 |
GTCGCGC | 790 | 0.0 | 17.252533 | 8 |
TATACTG | 8760 | 0.0 | 14.861329 | 5 |
CTATACT | 9335 | 0.0 | 14.852161 | 4 |
CATACAC | 57325 | 0.0 | 14.437981 | 3 |
GTGTATG | 53735 | 0.0 | 14.418823 | 1 |
ATACCGT | 5830 | 0.0 | 14.34939 | 6 |
TACCGTG | 5315 | 0.0 | 14.324969 | 7 |
ACATGAC | 50895 | 0.0 | 14.119338 | 8 |
ACACATG | 58850 | 0.0 | 13.895839 | 6 |
CACATGA | 56695 | 0.0 | 13.677955 | 7 |
GTATAGA | 12380 | 0.0 | 13.649949 | 1 |
TCTATAC | 11875 | 0.0 | 13.614948 | 3 |
CATGACA | 52575 | 0.0 | 13.471499 | 9 |
GATTGAG | 51950 | 0.0 | 13.434543 | 7 |
GTGCTAG | 2745 | 0.0 | 13.032521 | 1 |
ATTGAGT | 57345 | 0.0 | 13.014782 | 8 |
TTGAGTA | 56405 | 0.0 | 12.998371 | 9 |
TCATACA | 64650 | 0.0 | 12.976873 | 2 |
GTATTAG | 11290 | 0.0 | 12.8831415 | 1 |