FastQCFastQC Report
Tue 15 Nov 2016
SRR1946171.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946171.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33105600
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGCG23550.012.5617827
TATACCG112000.011.7811045
TATGAGC141200.011.48079794
CATACAC892650.011.0208563
TATACTG161300.010.8876695
CTATACT177000.010.884064
ATACCGT104750.010.7138326
ACACATG881800.010.6822266
ACATGAC671750.010.6182518
TATACAG149100.010.5817945
TCTATAC217800.010.54801753
GTATAGA237100.010.4413971
CATGACA681300.010.30402859
CACATGA839850.010.2820947
TACCGTG91250.010.0346777
AGCGCGC38050.09.9961618
TCATACA977150.09.9762392
GTATATA461200.09.8886931
GCGCGCC27650.09.850029
ATCATAC969450.09.7728841