Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946223.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22286928 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 22665 | 0.10169638453536531 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 8760 | 0.0 | 19.046068 | 5 |
ATACCGT | 7815 | 0.0 | 18.4625 | 6 |
TACCGTG | 7140 | 0.0 | 18.167366 | 7 |
CCGTGAG | 6555 | 0.0 | 17.924557 | 9 |
TCTATAC | 15100 | 0.0 | 15.967292 | 3 |
CTATACC | 12015 | 0.0 | 15.881202 | 4 |
ACCGTGA | 8275 | 0.0 | 15.27796 | 8 |
GTATAGA | 15725 | 0.0 | 15.175804 | 1 |
CATACAC | 66310 | 0.0 | 13.877924 | 3 |
CTAGTAC | 6815 | 0.0 | 13.861846 | 3 |
GTACTAG | 8985 | 0.0 | 13.515622 | 1 |
TATACTG | 10555 | 0.0 | 13.491663 | 5 |
ACATGAC | 55505 | 0.0 | 13.319187 | 8 |
CTATACT | 10735 | 0.0 | 13.17788 | 4 |
ACACATG | 69895 | 0.0 | 13.118744 | 6 |
GTATAGG | 7280 | 0.0 | 13.060337 | 1 |
CACATGA | 68330 | 0.0 | 12.965255 | 7 |
CATGACA | 56420 | 0.0 | 12.928249 | 9 |
GTCGCGC | 740 | 1.8189894E-12 | 12.702212 | 8 |
GTGTATG | 63685 | 0.0 | 12.5719185 | 1 |