FastQCFastQC Report
Tue 15 Nov 2016
SRR1946267.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946267.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24556396
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG80000.012.1699055
TATACTG124650.011.9989065
TCTATAC158900.011.6614723
CTATACT131900.011.4816574
TACCGTG66150.011.3016287
CATACAC627450.011.2807623
GTATATA339050.010.9510361
TATACAG110400.010.7784985
ACACATG618400.010.69774156
GTATTAG153900.010.6715811
ACATGAC485000.010.54719458
GTATAGG87350.010.3976781
GTATAGA171200.010.3903461
ATACCGT77000.010.3806776
CCGTGAG53750.010.3219399
CACATGA591200.010.2277547
CATGACA497150.010.1572149
TATAGTG116550.010.0079755
CTATACC122700.09.9660324
GTATTAT182400.09.8813421