FastQCFastQC Report
Wed 16 Nov 2016
SRR1945789.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945789.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39946158
Sequences flagged as poor quality0
Sequence length72
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT81700.08.0203071
CCGAGAT134450.07.90558217
AATGCCG100050.06.2486313
CGAGATC176850.06.08491518
GGCATTC110300.05.96326162
GCTGAAC82250.05.960613711
CCTGCTG87800.05.92105968
GCATTCC123950.05.73142863
ATGCCGA105050.05.701603414
TGCCGAG116600.05.164948515
CAACCTC165250.05.109951566