FastQCFastQC Report
Tue 15 Nov 2016
SRR1946264.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946264.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35961946
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG127950.016.1263335
ATACCGT105600.014.5513946
TACCGTG106650.013.6147027
TCTATAC200350.013.0444163
CATACAC1007300.012.4359113
AGACCGG161700.012.326241594
TATACTG159800.012.1180255
GTATAGA219800.011.8795121
ACACATG990900.011.8131236
ACATGAC756700.011.761618
GTATATA472500.011.7393831
CCGTGAG83900.011.70502959
GTGTATG989050.011.6541621
CTATACT152850.011.532014
CACATGA945400.011.4021927
TAGGCTG115800.011.3647775
CATGACA808550.011.1695249
TCATACA1124950.011.1197282
TATACAG146150.011.0629525
CTAGGCT101700.010.7227524