FastQCFastQC Report
Tue 15 Nov 2016
SRR1946219.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946219.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18482682
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC226030.12229285771404821No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG96850.017.130125
CTATACT99550.016.6183034
TATACCG67500.016.2232345
ACATGAC459450.016.0805028
CATACAC556150.015.9380453
GTCGCGC11600.015.8012678
CATGACA464350.015.6476569
ACACATG568400.015.48706156
GAGCGCG12550.015.3541377
CACATGA553400.015.2783797
TCTATAC125750.015.0246143
GTGTATG506850.014.7295211
ATACCGT61400.014.1608286
TCATACA614300.014.1462622
ATCATAC601900.013.8581181
TACCGTG54100.013.8129097
GTATAGA135200.013.6829821
GATTGAG484050.013.6223737
TAATACT145050.013.4466984
TTGAGTA520400.013.38431559