FastQCFastQC Report
Tue 15 Nov 2016
SRR1946190.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946190.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31015762
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG145250.018.8031165
ATACCGT132650.018.1728696
CCGTGAG109800.017.9311839
TACCGTG112650.017.6868937
ACCGTGA131800.016.6136468
TCTATAC237100.015.7023333
CTAGTAC135150.014.7823483
GTATAGA252550.013.6690921
GTACTAC139300.013.6283616
TATGAGC136550.013.07100794
TGTAGGG188350.012.8288282
CTATACC209600.012.7160184
TATACTG147500.012.6203975
CCTAGTA151750.012.5153262
GTAGGGA182100.012.3650583
TAGGCTG93750.012.2345625
TAGTACT262200.012.226754
ATGTAGG217600.012.1469821
GTACTAG182150.012.0839161
GATACCC161050.011.874858