FastQCFastQC Report
Tue 15 Nov 2016
SRR1946134.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946134.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37064524
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG181950.012.4016715
TATACCG115650.012.3571695
TCTATAC227000.011.8485933
TATACAG170900.011.4155565
GTATAGA239800.011.2573331
CATACAC1078250.011.2380653
TAGGCTG111750.011.1898735
CTATACT193850.011.1823144
ACATGAC820200.010.8176728
GTATTAG204900.010.741791
TACCGTG84100.010.6735077
ACACATG1063700.010.6527976
GTATATA519900.010.6108691
CTAGGCT102950.010.5507224
CATGACA838500.010.5142389
CACATGA1020300.010.2948357
TCATACA1162650.010.1877182
TAGACTG92400.010.1244675
CTGTCCC118500.09.9541339
GTGTATG1041250.09.8914941