Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946170.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38021528 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12955 | 0.0 | 13.447325 | 5 |
TATACTG | 18165 | 0.0 | 12.77 | 5 |
TATGAGC | 16370 | 0.0 | 12.667315 | 94 |
CTATACT | 18805 | 0.0 | 12.594058 | 4 |
TAGGCTG | 12600 | 0.0 | 12.298234 | 5 |
TCTATAC | 22410 | 0.0 | 11.908378 | 3 |
TACCGTG | 10955 | 0.0 | 11.615991 | 7 |
GCTGTCC | 11305 | 0.0 | 11.464105 | 8 |
CTAGGCT | 11035 | 0.0 | 11.369658 | 4 |
CCGTGAG | 8735 | 0.0 | 11.181551 | 9 |
ATACCGT | 10950 | 0.0 | 11.020977 | 6 |
CTGTCCC | 12830 | 0.0 | 11.016446 | 9 |
GTATAGA | 24165 | 0.0 | 10.888463 | 1 |
TAGTACT | 20170 | 0.0 | 10.809873 | 4 |
GTATAGG | 13305 | 0.0 | 10.719372 | 1 |
ACATGAC | 86805 | 0.0 | 10.689168 | 8 |
CATACAC | 106310 | 0.0 | 10.650966 | 3 |
CTAGTAC | 11570 | 0.0 | 10.5175 | 3 |
ACACATG | 108985 | 0.0 | 10.435386 | 6 |
GTATATA | 50480 | 0.0 | 10.322143 | 1 |