Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946189.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38897008 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 14025 | 0.0 | 14.04374 | 5 |
TACCGTG | 10840 | 0.0 | 12.5276165 | 7 |
TCTATAC | 25510 | 0.0 | 12.364911 | 3 |
CTAGTAC | 13490 | 0.0 | 12.1268 | 3 |
ATACCGT | 12210 | 0.0 | 12.007027 | 6 |
TATACTG | 18605 | 0.0 | 11.698306 | 5 |
CCGTGAG | 10325 | 0.0 | 11.513487 | 9 |
CTATACT | 19725 | 0.0 | 11.367506 | 4 |
ACCGTGA | 13505 | 0.0 | 11.342226 | 8 |
GTATAGA | 26550 | 0.0 | 11.213117 | 1 |
GTACTAG | 17215 | 0.0 | 11.064586 | 1 |
TAGTACT | 25870 | 0.0 | 10.593413 | 4 |
CTATACC | 20505 | 0.0 | 10.155651 | 4 |
GTATAGG | 13755 | 0.0 | 10.155072 | 1 |
CATACAC | 93825 | 0.0 | 10.145779 | 3 |
GTACTAC | 15030 | 0.0 | 10.066846 | 6 |
TATGAGC | 15785 | 0.0 | 9.904691 | 94 |
TAGGCTG | 11995 | 0.0 | 9.875792 | 5 |
TAGACCG | 8730 | 0.0 | 9.80006 | 5 |
GCTGTCC | 9640 | 0.0 | 9.699544 | 8 |