FastQCFastQC Report
Tue 15 Nov 2016
SRR1945948.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945948.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48387680
Sequences flagged as poor quality0
Sequence length101
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC88250.011.709187548-49
GCCGTCT93500.010.94891248-49
TATGCCG97450.010.72983146-47
TCGGAAG235850.010.7118893
GAGCACA219750.010.3849189
ATGCCGT101150.010.10186746-47
GCACACG115300.09.79510310-11
AGAGCAC241450.09.682428
CGTATGC122750.08.672482544-45
GTATGCC117400.08.66015744-45
CATCACG145850.08.46140132-33
CACACGT143150.07.83591112-13
GATCGGA308550.07.804491
CGGAAGA349100.07.61576564
ATCGGAA381850.07.12139132
ACGTCTG157800.07.071511714-15
CGTCTGA163700.07.033550316-17
GAAGAGC376000.06.9207456
CAGTCAC167700.06.856896426-27
TCGTATG164650.06.771109642-43