FastQCFastQC Report
Wed 16 Nov 2016
SRR1945787.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945787.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28315058
Sequences flagged as poor quality0
Sequence length101
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC50050.07.01151948-49
GAGCACA127600.06.44771969
TATGCCG54150.06.34873246-47
GCCGTCT56300.06.275555648-49
TCGGAAG142950.06.13717653
GCACACG67850.06.09735510-11
AGAGCAC138350.06.0847178
ATGCCGT56300.06.021475346-47
CGTATGC70350.05.19139344-45
GTATGCC66600.05.161130444-45
CACACGT86650.05.01518912-13