Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946198.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24021652 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 11235 | 0.0 | 14.0138855 | 5 |
CTATACT | 11610 | 0.0 | 12.02295 | 4 |
CATACAC | 54560 | 0.0 | 11.551577 | 3 |
CTAGGCT | 5625 | 0.0 | 11.530375 | 4 |
CTAGTAC | 8415 | 0.0 | 11.337799 | 3 |
TCTATAC | 14060 | 0.0 | 11.331861 | 3 |
GTACTAG | 9500 | 0.0 | 11.197503 | 1 |
TATACCG | 7380 | 0.0 | 11.017336 | 5 |
TAGACCG | 6660 | 0.0 | 10.938161 | 5 |
ACACATG | 57165 | 0.0 | 10.786702 | 6 |
ACATGAC | 46885 | 0.0 | 10.655758 | 8 |
GTATAGA | 14995 | 0.0 | 10.641175 | 1 |
GTGTATG | 53880 | 0.0 | 10.579203 | 1 |
CCGTGCG | 1795 | 0.0 | 10.473228 | 9 |
GTCCTAT | 6665 | 0.0 | 10.451964 | 1 |
AGACCGT | 6480 | 0.0 | 10.444136 | 6 |
GTATATA | 33695 | 0.0 | 10.421008 | 1 |
GTCGCGC | 1540 | 0.0 | 10.376317 | 8 |
CATGACA | 48170 | 0.0 | 10.361745 | 9 |
CACATGA | 55825 | 0.0 | 10.237405 | 7 |