Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945955.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 74314446 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 38950 | 0.0 | 7.006585 | 4 |
GGTCGCC | 9500 | 0.0 | 6.723478 | 44-45 |
AGAGCGT | 22005 | 0.0 | 6.5765057 | 9 |
TGCCGTC | 11560 | 0.0 | 6.002819 | 50-51 |
TATGCCG | 12125 | 0.0 | 5.867171 | 48-49 |
GCCGTCT | 12780 | 0.0 | 5.7787566 | 52-53 |
CGCCGTA | 11660 | 0.0 | 5.740047 | 46-47 |
GCACACG | 14285 | 0.0 | 5.6950564 | 12-13 |
CGGAAGA | 52525 | 0.0 | 5.683664 | 5 |
GATCGGA | 50490 | 0.0 | 5.656952 | 2 |
ATGCCGT | 12725 | 0.0 | 5.561591 | 50-51 |
TGGTCGC | 11950 | 0.0 | 5.4145 | 42-43 |
AAGAGCG | 27915 | 0.0 | 5.2656817 | 8 |
ATCGGAA | 55440 | 0.0 | 5.182442 | 3 |
GTATGCC | 14930 | 0.0 | 5.010794 | 48-49 |