FastQCFastQC Report
Tue 15 Nov 2016
SRR1946013.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946013.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118616728
Sequences flagged as poor quality0
Sequence length101
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC170250.07.88235148-49
GCCGTCT183700.07.200866748-49
GTCACGC196750.07.04759328-29
GAGCACA454100.06.91333969
TCGGAAG461350.06.9005693
ATGCCGT203700.06.55253746-47
GCACACG233250.06.446910-11
AGTCACG224100.06.283823528-29
TATGCCG218000.06.23263846-47
AGAGCAC500100.06.12563948
TCACGCC245900.06.02891130-31
GTATGCC228400.05.91640744-45
CACGCCA260700.05.73265730-31
CGTATGC256100.05.35132744-45
CACACGT299950.05.01100212-13