FastQCFastQC Report
Tue 15 Nov 2016
SRR1946123.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946123.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35161716
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG121750.012.3936085
GTCGCGC17050.011.577678
TATACTG170600.011.3797515
TAGACCG87900.011.0698875
GTATATA507500.010.8790781
GTATAGA237750.010.8199891
TAGGCTG107150.010.7920685
TCTATAC217650.010.7780473
CTATACT186450.010.6653764
CATACAC993800.010.4825983
CCGTGAG82950.010.4249419
ACATGAC751550.010.374928
CTGTCCC113150.010.2592259
ATACCGT106550.010.23442656
GTATTAG197300.010.130291
ACACATG1000050.010.128726
TATACAG157100.09.9339885
TACCGTG93350.09.91908557
CATGACA779200.09.8976439
GTATTAT262500.09.8177351