Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945951.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 89805902 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 14575 | 0.0 | 11.004487 | 44-45 |
CCGTACG | 19355 | 0.0 | 10.012875 | 34-35 |
TATGCCG | 16545 | 0.0 | 9.82039 | 48-49 |
TGCCGTC | 15945 | 0.0 | 9.793218 | 50-51 |
CGCCGTA | 16240 | 0.0 | 9.6598015 | 46-47 |
ATGCCGT | 17330 | 0.0 | 9.227022 | 50-51 |
GCCGTCT | 17025 | 0.0 | 9.089564 | 52-53 |
TGGTCGC | 18380 | 0.0 | 8.408298 | 42-43 |
CGTATGC | 20560 | 0.0 | 8.198678 | 46-47 |
CGTACGT | 22980 | 0.0 | 8.14084 | 34-35 |
GTATGCC | 20850 | 0.0 | 8.017302 | 48-49 |
AGAGCGT | 50930 | 0.0 | 7.6983814 | 9 |
GCCGTAT | 21705 | 0.0 | 7.410252 | 48-49 |
TCGGAAG | 109035 | 0.0 | 7.19457 | 4 |
AAGAGCG | 59785 | 0.0 | 6.744103 | 8 |
CACCGTA | 31050 | 0.0 | 6.635954 | 32-33 |
CCGTATC | 23925 | 0.0 | 6.6150146 | 48-49 |
GTCACCG | 32160 | 0.0 | 6.5221696 | 30-31 |
CGGAAGA | 123195 | 0.0 | 6.489212 | 5 |
GTCGCCG | 25890 | 0.0 | 6.4205103 | 44-45 |