Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946267.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24556396 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 8000 | 0.0 | 12.169905 | 5 |
TATACTG | 12465 | 0.0 | 11.998906 | 5 |
TCTATAC | 15890 | 0.0 | 11.661472 | 3 |
CTATACT | 13190 | 0.0 | 11.481657 | 4 |
TACCGTG | 6615 | 0.0 | 11.301628 | 7 |
CATACAC | 62745 | 0.0 | 11.280762 | 3 |
GTATATA | 33905 | 0.0 | 10.951036 | 1 |
TATACAG | 11040 | 0.0 | 10.778498 | 5 |
ACACATG | 61840 | 0.0 | 10.6977415 | 6 |
GTATTAG | 15390 | 0.0 | 10.671581 | 1 |
ACATGAC | 48500 | 0.0 | 10.5471945 | 8 |
GTATAGG | 8735 | 0.0 | 10.397678 | 1 |
GTATAGA | 17120 | 0.0 | 10.390346 | 1 |
ATACCGT | 7700 | 0.0 | 10.380677 | 6 |
CCGTGAG | 5375 | 0.0 | 10.321939 | 9 |
CACATGA | 59120 | 0.0 | 10.227754 | 7 |
CATGACA | 49715 | 0.0 | 10.157214 | 9 |
TATAGTG | 11655 | 0.0 | 10.007975 | 5 |
CTATACC | 12270 | 0.0 | 9.966032 | 4 |
GTATTAT | 18240 | 0.0 | 9.881342 | 1 |