Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946176.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34122932 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGAGC | 18070 | 0.0 | 12.444635 | 94 |
ACATGAC | 85280 | 0.0 | 12.071422 | 8 |
TATACTG | 16740 | 0.0 | 12.063455 | 5 |
TATACCG | 11690 | 0.0 | 11.851305 | 5 |
CATGACA | 87705 | 0.0 | 11.710965 | 9 |
CATACAC | 106785 | 0.0 | 11.675606 | 3 |
ACACATG | 105425 | 0.0 | 11.510974 | 6 |
CACATGA | 102890 | 0.0 | 11.315361 | 7 |
GTATAGA | 23350 | 0.0 | 11.305983 | 1 |
CTATACT | 17745 | 0.0 | 11.277879 | 4 |
TAGGCTG | 10760 | 0.0 | 11.086134 | 5 |
GTATTAG | 19280 | 0.0 | 11.081056 | 1 |
TCTATAC | 21910 | 0.0 | 11.063591 | 3 |
GTCGCGC | 1930 | 0.0 | 10.950155 | 8 |
GAGCGCG | 2520 | 0.0 | 10.622809 | 7 |
GTATATA | 47665 | 0.0 | 10.573584 | 1 |
TCATACA | 116895 | 0.0 | 10.541272 | 2 |
ATCATAC | 116970 | 0.0 | 10.379526 | 1 |
TAGTACT | 20595 | 0.0 | 10.378712 | 4 |
TATACAG | 15145 | 0.0 | 10.357045 | 5 |