FastQCFastQC Report
Tue 15 Nov 2016
SRR1946161.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946161.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33441522
Sequences flagged as poor quality0
Sequence length100
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC153200.014.47813894
TATACCG112300.014.4306135
TATACTG171700.014.116435
CTATACT178450.013.53825954
TCTATAC214000.013.2643323
TAGACCG88050.012.9101545
CTAGTAC116850.012.6288313
CCGTGAG95600.012.5294029
GACCGTG68150.012.4066547
GTATAGA229800.012.2717371
TATACAG159750.011.9967815
AGACCGT89000.011.7696326
GTGTATG892450.011.7585951
ACATGAC755550.011.681858
GTATAGG122300.011.6639441
GTACTAG166400.011.515171
CATACAC963150.011.5105553
ACCGTGA123150.011.3665838
ACACATG934800.011.2558266
CATGACA782600.011.1760389