FastQCFastQC Report
Tue 15 Nov 2016
SRR1946125.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946125.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38318744
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG130700.013.5951575
GTCGCGC22350.012.8278888
TCTATAC235900.012.4552333
TATACTG181800.012.0233955
CTATACT198150.011.7675854
TACCGTG108550.011.6477867
CATACAC1152450.011.4503843
ACATGAC901300.011.4411598
CCGTGAG92050.011.3345639
TAGGCTG115150.011.0630115
ACACATG1161550.011.0432186
CATGACA938850.011.0279269
GTATAGA251700.011.0051851
ATACCGT117150.010.9133146
CACATGA1114500.010.91031557
CTAGGCT111350.010.8925414
GTACTAG159900.010.7057781
GTGTATG1107850.010.6169071
TATACAG182850.010.5918125
GTATATA584100.010.5474971