FastQCFastQC Report
Tue 15 Nov 2016
SRR1946248.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946248.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23019864
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG114500.015.4730955
CATACAC507950.013.9176933
TATACCG81000.013.86609655
CTATACT125800.013.6006954
TAATACT188750.013.5223844
ACATGAC405700.013.1696198
TCTATAC148550.012.91004853
ACACATG519050.012.9011416
GTGTATG479050.012.8216551
CATGACA412750.012.7510199
GTATATA333100.012.7169311
CACATGA496400.012.5714117
GTATAGA160150.012.5197931
ATACTGT115700.012.4282666
TACACTG65450.012.4216065
TAGTACT118150.012.332994
GTATTAG139300.012.3326441
TAGGCCG28000.012.2519765
TATACAG102450.012.1096975
GTATAGG89050.012.1036411