FastQCFastQC Report
Tue 15 Nov 2016
SRR1946188.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946188.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27129596
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG102100.015.8369635
TACCGTG84050.014.3678527
TATGAGC127350.014.31061694
ATACCGT91550.013.8577346
GTCGCGC14800.013.6514358
TCTATAC176350.012.980853
CCGTGAG84350.012.7563369
CTAGTAC97650.012.6599843
GTATAGA178450.012.3873421
TATACTG123350.012.3465355
TAGGCTG84550.012.0638325
ACCGTGA107250.011.7411078
CTATACT136000.011.4744524
CATACAC778600.011.368043
GCTGTCC73750.011.276728
GTATAGG99300.011.2252471
CTAGGCT77100.011.2175044
GTACTAC109850.011.164196
ACATGAC641200.011.0137968
CTATACC144900.010.9643054