FastQCFastQC Report
Wed 16 Nov 2016
SRR1945783.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945783.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62689548
Sequences flagged as poor quality0
Sequence length101
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG318400.017.480343
TGCCGTC134500.017.05149748-49
GAGCACA300050.016.551629
GCCGTCT142900.015.40989548-49
AGTCACG166450.015.3139628-29
TATGCCG153450.015.226253546-47
AGAGCAC323400.015.2223368
GCACACG170250.014.97107210-11
ATGCCGT148650.014.66044346-47
GATCGGA412300.013.5766221
GTATGCC169250.013.40175344-45
GTCACGA186450.013.20652728-29
CGTATGC182050.013.05090144-45
CGGAAGA457600.012.3392374
ATCGGAA491900.012.2712942
CACACGT215250.011.90006912-13
ACGTCTG214400.011.48704214-15
CGTCTGA227500.011.2362916-17
GAAGAGC502250.010.8296886
CGATCAG244150.010.703917532-33