FastQCFastQC Report
Tue 15 Nov 2016
SRR1946153.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946153.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42159302
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT480690.1140175423207908No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG135600.013.69070155
CCGTGAG105150.012.5151059
TATACTG197500.012.4933965
ACATGAC1298900.012.14677058
CATACAC1672350.012.0255363
ACACATG1669600.011.7638176
CATGACA1346100.011.6370729
CACATGA1612350.011.5780567
ATACCGT123850.011.5362836
TAGACCG108100.011.3475775
TCATACA1801000.011.0752772
TACCGTG99150.011.0445737
ACCGTGA141300.010.9763268
CTAGTAC148450.010.8593363
GTATAGA267250.010.8024651
ATCATAC1751200.010.7988761
TCTATAC248250.010.7913283
TAGTACT297600.010.6600734
CTATACT207750.010.5422724
GTGTATG1558450.010.5173591