Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946013.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 118616728 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 36 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 17025 | 0.0 | 7.882351 | 48-49 |
GCCGTCT | 18370 | 0.0 | 7.2008667 | 48-49 |
GTCACGC | 19675 | 0.0 | 7.047593 | 28-29 |
GAGCACA | 45410 | 0.0 | 6.9133396 | 9 |
TCGGAAG | 46135 | 0.0 | 6.900569 | 3 |
ATGCCGT | 20370 | 0.0 | 6.552537 | 46-47 |
GCACACG | 23325 | 0.0 | 6.4469 | 10-11 |
AGTCACG | 22410 | 0.0 | 6.2838235 | 28-29 |
TATGCCG | 21800 | 0.0 | 6.232638 | 46-47 |
AGAGCAC | 50010 | 0.0 | 6.1256394 | 8 |
TCACGCC | 24590 | 0.0 | 6.028911 | 30-31 |
GTATGCC | 22840 | 0.0 | 5.916407 | 44-45 |
CACGCCA | 26070 | 0.0 | 5.732657 | 30-31 |
CGTATGC | 25610 | 0.0 | 5.351327 | 44-45 |
CACACGT | 29995 | 0.0 | 5.011002 | 12-13 |