Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945999.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37707448 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 22495 | 0.0 | 8.358616 | 94-95 |
GCCGTCT | 19185 | 0.0 | 8.024029 | 48-49 |
TGCCGTC | 19440 | 0.0 | 7.9675817 | 48-49 |
TGGTCGC | 24675 | 0.0 | 7.552624 | 94-95 |
CTGCTTG | 20955 | 0.0 | 7.4810796 | 56-57 |
GTCGCCG | 24340 | 0.0 | 7.42189 | 94-95 |
TATGCCG | 23050 | 0.0 | 7.207386 | 94-95 |
CGTATGC | 28720 | 0.0 | 7.168445 | 94-95 |
CGCCGTA | 14725 | 0.0 | 7.0796547 | 94-95 |
ATGCCGT | 21710 | 0.0 | 6.9717894 | 46-47 |
CCGTCTT | 24970 | 0.0 | 6.71216 | 50-51 |
GTATGCC | 26565 | 0.0 | 6.6479445 | 94-95 |
GCCGTAT | 15665 | 0.0 | 6.5788617 | 94-95 |
CTCGGTG | 43120 | 0.0 | 6.507712 | 94-95 |
TCTCGGG | 12115 | 0.0 | 6.483116 | 94-95 |
TCGTATG | 35145 | 0.0 | 6.3387785 | 94-95 |
GATCTCG | 94605 | 0.0 | 6.3247657 | 94-95 |
TCGGTGG | 42505 | 0.0 | 6.2938957 | 94-95 |
CTCGTAT | 35880 | 0.0 | 6.26863 | 94-95 |
GCGTCGG | 8510 | 0.0 | 6.208929 | 94-95 |