FastQCFastQC Report
Tue 15 Nov 2016
SRR1946043.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946043.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35984360
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGG155250.029.7332794
TGAGCGG326950.026.74658694
CTGAGCG431850.026.63052294
TGATGGC402600.023.40864894
GTGTAGA224050.018.55310894
TCTGAGC645250.018.42597694
GGCAGAC140700.018.04172590-91
GCGTGTA125900.017.98355592-93
CTGATGG603500.017.85252894
AGGCGTG129350.017.67138390-91
GGCGTGT136350.017.21029390-91
GTCGCGC16150.017.0945388
CTCTGAG781000.015.89530894
TGGCGCG152750.015.83646578-79
CAGACCG161050.015.81768792-93
CGTGTAG150200.015.68205192-93
GCAGACC160600.015.57042792-93
GGCTGGC164900.015.36336182-83
GCTGGCA171750.014.98215982-83
TATACCG115050.014.9750365