FastQCFastQC Report
Tue 15 Nov 2016
SRR1946194.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946194.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49391210
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG170850.014.9750195
TACCGTG140250.013.8578587
TCTATAC312800.013.82395653
CTATACT247500.013.7341834
TATACTG244500.013.2097755
CCGTGAG129350.012.8843039
ATACCGT151750.012.7146716
CTAGTAC185100.012.6317193
GTATAGA329000.012.3966851
GTCGCGC21400.012.2849478
CATACAC1189800.011.9329363
ACCGTGA172550.011.7263098
ACATGAC951900.011.5306088
TATACAG226150.011.396245
GTACTAG217700.011.3745411
ACACATG1214650.011.2391966
TAGGCTG159450.011.1289225
GCTGTCC129600.011.12070758
CATGACA989800.011.0843529
CTAGGCT139550.011.0689284