FastQCFastQC Report
Tue 15 Nov 2016
SRR1946231.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946231.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21355122
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG101450.014.4076995
TATACCG65050.013.5830355
CATACAC488800.013.2304173
TACCGTG54200.013.0070047
CTATACT106950.012.8757674
GTCGCGC9950.012.75348
GTATATA310150.012.6880971
GTGTATG471750.012.5824481
ACATGAC414000.012.4989138
TATACAG95400.012.4640275
CTAGGCT52850.012.2721414
ACACATG510800.012.1361016
CATGACA424900.012.1229729
TCTATAC125100.011.9469233
TAGGCTG61550.011.835595
CACATGA490650.011.6287267
GTATAGA137600.011.5969361
GATTGAG439750.011.3608987
TCATACA551950.011.333622
GTATTAG123800.011.3307231