Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946197.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20276476 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 7105 | 0.0 | 15.478906 | 5 |
CTATACT | 10200 | 0.0 | 14.836936 | 4 |
TATACTG | 9905 | 0.0 | 14.614526 | 5 |
GTCGCGC | 885 | 0.0 | 14.338673 | 8 |
TCTATAC | 12545 | 0.0 | 13.562083 | 3 |
GTATAGA | 13005 | 0.0 | 13.499618 | 1 |
CATACAC | 42665 | 0.0 | 13.274061 | 3 |
ACATGAC | 31835 | 0.0 | 12.829313 | 8 |
CCGTGAG | 5325 | 0.0 | 12.797846 | 9 |
CTAGTAC | 7220 | 0.0 | 12.758728 | 3 |
TAGTACT | 12820 | 0.0 | 12.757915 | 4 |
GTGTATG | 41195 | 0.0 | 12.750953 | 1 |
ACACATG | 44180 | 0.0 | 12.691216 | 6 |
GTACTAG | 8560 | 0.0 | 12.536723 | 1 |
CCGTGCC | 1635 | 0.0 | 12.360591 | 9 |
GTATTAT | 16135 | 0.0 | 12.339409 | 1 |
TACCGTG | 5025 | 0.0 | 12.252472 | 7 |
CATGACA | 32875 | 0.0 | 12.166125 | 9 |
ATACCGT | 6105 | 0.0 | 12.163538 | 6 |
CACATGA | 42615 | 0.0 | 12.10956 | 7 |