FastQCFastQC Report
Tue 15 Nov 2016
SRR1946166.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946166.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40610188
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGTAC153550.013.4321343
TATGAGC165900.013.34974494
TCTATAC241700.012.5764463
TATACCG135750.012.4537935
GTCGCGC18500.012.4384748
TATACTG193350.012.1197975
CTATACT204900.012.0395234
GTACTAG214150.011.8694961
TGTAGGG220350.011.8121272
GACCGTG95550.011.59905057
CCGTGAG131750.011.584489
TACCGTG104350.011.160937
CATACAC1069750.011.1509213
GTACTAC173000.011.0210156
ATGTAGG263400.010.9904611
GTATAGA260300.010.9766841
ACCGTGA166950.010.9703618
ACATGAC815800.010.9661468
ATACCGT116700.010.9456046
ACACATG1045550.010.7662616