FastQCFastQC Report
Tue 15 Nov 2016
SRR1945971.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945971.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41511012
Sequences flagged as poor quality0
Sequence length101
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC342550.08.08060194-95
GTATGCC288750.07.265488694-95
TATGCCG246550.07.16451794-95
TGCCGTC197950.06.734509594-95
GGTCGCC92450.06.65916194-95
TCGTATG437000.06.64838694-95
GCCGTCT191700.06.49705894-95
ATGCCGT229550.06.35413694-95
CTCGTAT444200.06.00113492-93
CGCCGTA109150.05.81385494-95
GTCGCCG128200.05.190047794-95
CACTTGA888000.05.17032694-95
TCTCGTA516200.05.145745892-93