Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946153.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 42159302 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT | 48069 | 0.1140175423207908 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 13560 | 0.0 | 13.6907015 | 5 |
CCGTGAG | 10515 | 0.0 | 12.515105 | 9 |
TATACTG | 19750 | 0.0 | 12.493396 | 5 |
ACATGAC | 129890 | 0.0 | 12.1467705 | 8 |
CATACAC | 167235 | 0.0 | 12.025536 | 3 |
ACACATG | 166960 | 0.0 | 11.763817 | 6 |
CATGACA | 134610 | 0.0 | 11.637072 | 9 |
CACATGA | 161235 | 0.0 | 11.578056 | 7 |
ATACCGT | 12385 | 0.0 | 11.536283 | 6 |
TAGACCG | 10810 | 0.0 | 11.347577 | 5 |
TCATACA | 180100 | 0.0 | 11.075277 | 2 |
TACCGTG | 9915 | 0.0 | 11.044573 | 7 |
ACCGTGA | 14130 | 0.0 | 10.976326 | 8 |
CTAGTAC | 14845 | 0.0 | 10.859336 | 3 |
GTATAGA | 26725 | 0.0 | 10.802465 | 1 |
ATCATAC | 175120 | 0.0 | 10.798876 | 1 |
TCTATAC | 24825 | 0.0 | 10.791328 | 3 |
TAGTACT | 29760 | 0.0 | 10.660073 | 4 |
CTATACT | 20775 | 0.0 | 10.542272 | 4 |
GTGTATG | 155845 | 0.0 | 10.517359 | 1 |