Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946171.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33105600 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGCG | 2355 | 0.0 | 12.561782 | 7 |
TATACCG | 11200 | 0.0 | 11.781104 | 5 |
TATGAGC | 14120 | 0.0 | 11.480797 | 94 |
CATACAC | 89265 | 0.0 | 11.020856 | 3 |
TATACTG | 16130 | 0.0 | 10.887669 | 5 |
CTATACT | 17700 | 0.0 | 10.88406 | 4 |
ATACCGT | 10475 | 0.0 | 10.713832 | 6 |
ACACATG | 88180 | 0.0 | 10.682226 | 6 |
ACATGAC | 67175 | 0.0 | 10.618251 | 8 |
TATACAG | 14910 | 0.0 | 10.581794 | 5 |
TCTATAC | 21780 | 0.0 | 10.5480175 | 3 |
GTATAGA | 23710 | 0.0 | 10.441397 | 1 |
CATGACA | 68130 | 0.0 | 10.3040285 | 9 |
CACATGA | 83985 | 0.0 | 10.282094 | 7 |
TACCGTG | 9125 | 0.0 | 10.034677 | 7 |
AGCGCGC | 3805 | 0.0 | 9.996161 | 8 |
TCATACA | 97715 | 0.0 | 9.976239 | 2 |
GTATATA | 46120 | 0.0 | 9.888693 | 1 |
GCGCGCC | 2765 | 0.0 | 9.85002 | 9 |
ATCATAC | 96945 | 0.0 | 9.772884 | 1 |