FastQCFastQC Report
Tue 15 Nov 2016
SRR1945992.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945992.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44041974
Sequences flagged as poor quality0
Sequence length76
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC63750.016.17734753
CGCCGTA55750.015.36536856
GCCGTAT60100.014.42917457
TGGTCGC90700.011.276319552
CCGTATC76900.010.77720358
TATGCCG58100.010.71048953
GTCGCCG110300.09.35062554
ATCAGCC136700.09.2046862
CTCGGTG147350.09.10459747
CGTATGC73450.09.08899551
TCGGTGG149950.08.85418148
TGCCGTC64200.08.65887855
GGCTGAT135450.08.592912
CGTATCA99900.08.46946159
GTATGCC76900.08.45526352
CCGAGAT196500.07.929941717
GGTGGTC146500.07.67357850
ATGCCGT71200.07.512863654
GCCGTCT73900.07.428087756
TCGTATG116150.07.349750550