FastQCFastQC Report
Tue 15 Nov 2016
SRR1946240.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946240.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20668168
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG66050.016.0796135
TATACTG103450.014.5819145
TCTATAC132000.014.1006123
CATACAC500100.013.9756113
TATACAG93850.013.7200695
CTATACT110850.013.483674
GTGTATG487000.013.3116741
TACCGTG50450.013.2264727
ACACATG489050.013.1641446
GTATATA297350.012.9987891
GTATAGG69950.012.9896451
GTATAGA139700.012.8734411
ACATGAC378350.012.8297828
CATGACA384750.012.5674549
TCATACA555400.012.2625052
CTAGTAC62100.012.2614023
ACTGTGC34000.012.0241138
CCGTGAG45400.012.0063989
GTACTAG69100.011.9911911
TAGTACT122500.011.9711314