FastQCFastQC Report
Tue 15 Nov 2016
SRR1946033.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946033.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29165766
Sequences flagged as poor quality0
Sequence length100
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG99050.014.7697875
CCGTGAG75550.014.5028219
TACCGTG74250.013.6045637
ATACCGT81000.013.461196
TCTATAC162300.013.3219583
ACCGTGA100300.013.163658
TAGACCG73350.012.1207665
CTAGTAC96550.012.0996643
GTCGCGC12850.012.0665118
GTACTAC103200.012.0227766
TATACTG115750.011.9073465
CTAGGCT70000.011.8433044
TAGGCTG77250.011.5697365
AGACCGT64100.011.3646016
GACCGTG47550.011.3629197
CTATACC135800.011.3424314
GTATAGA179550.011.2593651
TAGTACT186250.011.1026454
TGTAGGG131600.010.8460182
CTATACT133450.010.7303334