FastQCFastQC Report
Wed 16 Nov 2016
SRR1945793.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945793.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74245840
Sequences flagged as poor quality0
Sequence length76
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG1463590.19712754276872615Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGCAT167000.040.6045651
CGGCATT209850.034.2038352
GGCATTC286550.027.9293693
CCGGGAT157250.025.8953818
AACCGGG209450.025.85647416
GCATTCC302600.025.4776824
CCGAGAT541700.025.41900617
TGAACCG310200.025.1619714
CCTGCTG237300.023.9868649
ACCGGGA216150.023.50031517
GCTGAAC267450.023.20590412
GACCGAT603300.022.77819332
CGAGATC602000.022.72166818
CTGAACC352100.022.23727213
CCGATAT380000.022.14748234
CGAGACC732700.022.11182229
GAGACCG726750.021.96135530
ATTCCTG301650.021.3959086
AGACCGA739950.021.13948831
GAACCGG276000.020.61077315