FastQCFastQC Report
Tue 15 Nov 2016
SRR1946236.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946236.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20988156
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG79400.017.5190055
CCGTGAG61600.015.180139
CTATACT114550.014.9775784
TCTATAC146850.014.9481263
TATACTG107000.014.8007735
TACCGTG58250.014.6819497
CTAGTAC77600.014.5981933
ATACCGT72650.014.4887526
GTATAGA154150.014.4122441
ACATGAC411650.014.3372438
TAGTACT139000.014.2367574
CATACAC598050.014.0374363
CATGACA424100.013.7501239
ACACATG578850.013.7032966
ACCGTGA74450.013.6330558
CTATACC114150.013.6300014
GTGTATG559200.013.34962751
GTATAGG69000.013.2338361
GTCGCGC7150.013.1440158
CACATGA545350.013.0885267