Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946203.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27835986 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 9290 | 0.0 | 15.581963 | 5 |
TATACTG | 13100 | 0.0 | 15.4271 | 5 |
CTATACT | 14300 | 0.0 | 14.526915 | 4 |
CATACAC | 62065 | 0.0 | 14.001589 | 3 |
TCTATAC | 16575 | 0.0 | 13.69559 | 3 |
CCGTGCG | 1760 | 0.0 | 13.351944 | 9 |
GCCGTGC | 2995 | 0.0 | 13.338571 | 8 |
ACACATG | 61655 | 0.0 | 13.301919 | 6 |
TACCGTG | 7225 | 0.0 | 13.270262 | 7 |
ACATGAC | 48555 | 0.0 | 13.212525 | 8 |
GTGTATG | 59675 | 0.0 | 12.9913025 | 1 |
TATACAG | 11930 | 0.0 | 12.9611225 | 5 |
CACATGA | 59465 | 0.0 | 12.938216 | 7 |
GTATAGG | 9525 | 0.0 | 12.898139 | 1 |
GTATAGA | 18055 | 0.0 | 12.878966 | 1 |
CATGACA | 49700 | 0.0 | 12.709546 | 9 |
TAGTACT | 14890 | 0.0 | 12.625612 | 4 |
ATACCGT | 7945 | 0.0 | 12.245135 | 6 |
GTATATA | 39345 | 0.0 | 12.166984 | 1 |
TCATACA | 70740 | 0.0 | 12.158505 | 2 |