FastQCFastQC Report
Tue 15 Nov 2016
SRR1945966.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945966.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56264614
Sequences flagged as poor quality0
Sequence length76
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT7502661.3334597834439954Illumina Paired End PCR Primer 2 (98% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT2579240.4584124579615884Illumina Paired End PCR Primer 2 (100% over 50bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGG935700.1663034602885572Illumina Paired End PCR Primer 2 (97% over 49bp)
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG738120.13118725030265024Illumina Paired End PCR Primer 2 (100% over 31bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGC570000.10130701332101914Illumina Paired End PCR Primer 2 (97% over 49bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT2482250.058.7793969
AGCGGTT2466850.058.44729210
GCGGTTC2453900.058.41871311
AGAGCGG2603050.056.9316528
TATGCCG1594250.056.8267443
CGTATGC1651750.056.21039241
ATGCCGT1362700.056.1399644
GTATGCC1639700.056.01490442
TGCCGTC1313000.055.77934345
CGAGACC2309850.055.51561429
GAGACCG2296600.055.36350330
GTTCAGC2536400.055.28262714
GCCGTCT1210750.055.1906446
CGGTTCA2585850.055.0477512
CAGCAGG2514750.054.81568517
AATGCCG2416400.054.7744124
CCGATAT1560400.054.60244434
TCGTATG1810850.054.53359640
GGTTCAG2602750.054.4767613
GACCGAT2248300.054.42919532