Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946129.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30704148 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 37949 | 0.12359567834287406 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 11230 | 0.0 | 14.273654 | 5 |
CCGTGAG | 10350 | 0.0 | 13.985737 | 9 |
GTCGCGC | 2050 | 0.0 | 13.526776 | 8 |
ACCGTGA | 12330 | 0.0 | 12.426555 | 8 |
GTATAGA | 20500 | 0.0 | 12.158677 | 1 |
GACCGTG | 7280 | 0.0 | 12.13785 | 7 |
TATACTG | 14640 | 0.0 | 12.136998 | 5 |
ACATGAC | 89020 | 0.0 | 11.773713 | 8 |
CATACAC | 109145 | 0.0 | 11.663742 | 3 |
TCTATAC | 18670 | 0.0 | 11.607794 | 3 |
CTATACT | 15695 | 0.0 | 11.44182 | 4 |
TAGACCG | 9505 | 0.0 | 11.424058 | 5 |
ACACATG | 108135 | 0.0 | 11.388278 | 6 |
CACATGA | 103840 | 0.0 | 11.370255 | 7 |
TACCGTG | 8415 | 0.0 | 11.338541 | 7 |
CATGACA | 92620 | 0.0 | 11.259717 | 9 |
ATACCGT | 9865 | 0.0 | 11.244444 | 6 |
TATACAG | 13300 | 0.0 | 10.815094 | 5 |
GTATTAG | 17000 | 0.0 | 10.705979 | 1 |
TCGCGCG | 2635 | 0.0 | 10.701524 | 9 |