Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946165.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18781808 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 955 | 0.0 | 15.734527 | 8 |
TATACCG | 6275 | 0.0 | 13.469693 | 5 |
TATACTG | 8845 | 0.0 | 12.210372 | 5 |
ATACCGT | 5390 | 0.0 | 12.109626 | 6 |
TCTATAC | 11615 | 0.0 | 11.842168 | 3 |
TCGCGCG | 1505 | 0.0 | 11.544485 | 9 |
CTATACT | 9200 | 0.0 | 11.381322 | 4 |
TACCGTG | 5205 | 0.0 | 11.277011 | 7 |
CTGTCCC | 6395 | 0.0 | 11.234668 | 9 |
CTAGGCT | 5160 | 0.0 | 11.192603 | 4 |
CGAGGGG | 2190 | 0.0 | 11.175775 | 94 |
GTATAGA | 11765 | 0.0 | 10.957949 | 1 |
GCTGTCC | 5315 | 0.0 | 10.866981 | 8 |
GTACTAG | 6775 | 0.0 | 10.695031 | 1 |
CATACAC | 46195 | 0.0 | 10.568691 | 3 |
GTATATA | 25555 | 0.0 | 10.568337 | 1 |
CTAGTAC | 6005 | 0.0 | 10.39732 | 3 |
TAGGCTG | 6000 | 0.0 | 10.330505 | 5 |
CCGTGAG | 4230 | 0.0 | 10.324094 | 9 |
GTATTAT | 12715 | 0.0 | 9.954205 | 1 |