FastQCFastQC Report
Tue 15 Nov 2016
SRR1946189.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946189.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38897008
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG140250.014.043745
TACCGTG108400.012.52761657
TCTATAC255100.012.3649113
CTAGTAC134900.012.12683
ATACCGT122100.012.0070276
TATACTG186050.011.6983065
CCGTGAG103250.011.5134879
CTATACT197250.011.3675064
ACCGTGA135050.011.3422268
GTATAGA265500.011.2131171
GTACTAG172150.011.0645861
TAGTACT258700.010.5934134
CTATACC205050.010.1556514
GTATAGG137550.010.1550721
CATACAC938250.010.1457793
GTACTAC150300.010.0668466
TATGAGC157850.09.90469194
TAGGCTG119950.09.8757925
TAGACCG87300.09.800065
GCTGTCC96400.09.6995448