FastQCFastQC Report
Tue 15 Nov 2016
SRR1946066.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946066.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43120084
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC533110.12363380368182957TruSeq Adapter, Index 6 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGTC139700.034.9825829
TCGGAAG328850.034.116373
GATCGGA376350.030.5408231
CGGAAGA382150.029.798964
ATCGGAA386400.029.726712
AGAGCGT177750.027.917038
GAGCACA229800.026.6037069
GTCACGC124950.026.20913728-29
TATGCCG124800.025.26614246-47
ATGCCGT134000.024.65366746-47
AAGAGCG215200.024.5207777
CGCCGTA101250.024.27379446-47
CACGCCA135200.024.25997430-31
CGTATGC130850.024.20727344-45
GCCGTCT137050.024.12427948-49
GGTCGCC106900.023.83227242-43
AGAGCAC258100.023.8141218
GCACACG139400.023.81318310-11
TGCCGTC135700.023.15212448-49
GAAGAGC500450.023.116346