FastQCFastQC Report
Tue 15 Nov 2016
SRR1946212.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946212.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26576738
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTGCG16250.014.4584029
TATACTG136050.013.6782755
CTATACT141600.013.5766054
ACATGAC478000.012.88781458
CATACAC599750.012.8294953
CATGACA484150.012.5299679
ACACATG602600.012.3286926
GTGTATG579100.012.1910551
GGACCGT27100.012.1378856
GTATAGA180600.012.118221
TCTATAC168900.012.0222353
TATACTA229600.011.8301615
CACATGA584400.011.6912337
GTATATA364400.011.6372421
TATACCG79800.011.4832925
GTATAGG98450.011.4735851
GTATTAT217100.011.4466311
TCATACA684250.011.0897352
TATACAG122200.011.0753125
ATCATAC667450.011.0427351