FastQCFastQC Report
Tue 15 Nov 2016
SRR1945968.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945968.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55012736
Sequences flagged as poor quality0
Sequence length101
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC233300.07.986717794-95
TATGCCG303300.07.84693694-95
GTATGCC350350.07.593994-95
ATGCCGT274450.07.504770394-95
GCCGTCT227400.07.453706794-95
CGTATGC411050.07.428023394-95
TCGTATG533000.06.557506694-95
GGTCGCC116350.06.38977494-95
CTCGTAT571950.06.184514594-95
CCGATGT906800.05.62816794-95
CGATGTA909650.05.615673594-95
TATCTCG750600.05.56596894-95
CGCCGTA137900.05.34036694-95
TCTCGTA673800.05.301723594-95
ACCGATG992850.05.25575794-95
ATCTCGT824200.05.20792694-95
CACCGAT1046750.05.18613794-95
CCGTCTT313750.05.111697794-95
TGGTCGC146250.05.105285692-93
GTATCTC806350.05.09996294-95