Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946109.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30446750 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGAGC | 13620 | 0.0 | 13.908743 | 94 |
GTCGCGC | 2550 | 0.0 | 13.073656 | 8 |
TATACCG | 9870 | 0.0 | 12.844661 | 5 |
TATACTG | 14720 | 0.0 | 12.727442 | 5 |
GTATAGA | 18745 | 0.0 | 12.228288 | 1 |
ACATGAC | 66230 | 0.0 | 11.903504 | 8 |
TCGCGCG | 2865 | 0.0 | 11.800188 | 9 |
CTATACT | 16135 | 0.0 | 11.793004 | 4 |
CATACAC | 91300 | 0.0 | 11.76739 | 3 |
GTATATA | 42615 | 0.0 | 11.707537 | 1 |
CTAGGCT | 8860 | 0.0 | 11.666143 | 4 |
TCTATAC | 18805 | 0.0 | 11.566246 | 3 |
ACACATG | 89340 | 0.0 | 11.452233 | 6 |
CATGACA | 68650 | 0.0 | 11.278754 | 9 |
TAGGCTG | 10050 | 0.0 | 11.166263 | 5 |
CACATGA | 84640 | 0.0 | 10.989693 | 7 |
GTATTAG | 17335 | 0.0 | 10.779257 | 1 |
TCATACA | 100780 | 0.0 | 10.613827 | 2 |
GTGTATG | 84840 | 0.0 | 10.579671 | 1 |
CTGTCCC | 11320 | 0.0 | 10.452861 | 9 |