FastQCFastQC Report
Tue 15 Nov 2016
SRR1946025.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946025.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42896182
Sequences flagged as poor quality0
Sequence length99
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC20050.016.9300638
TATACTG214950.013.7151935
CTAGTAC132850.013.5806413
CTATACT216450.012.8037984
TATACCG135000.012.7788065
CATACAC1297000.012.7668013
TCGCGCG27850.012.6892969
ACATGAC1086250.012.5768578
TCTATAC257300.012.5601593
TATACAG191800.012.4613375
TACCGTG103900.012.44168957
ACACATG1284250.012.3287116
GTATAGA270400.012.0603791
TAGACCG102800.012.0320225
CATGACA1132050.011.8297619
CCGTGCG27150.011.8175759
GTGTATG1209950.011.7614731
CACATGA1266500.011.7231377
GTATATA607300.011.7049541
TCATACA1415150.011.5248762