FastQCFastQC Report
Tue 15 Nov 2016
SRR1946193.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946193.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40677076
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC183750.013.89107194
TATACCG117700.012.8197415
TATACTG196100.012.6083675
TCTATAC253150.011.2711263
CATACAC1241550.011.2371523
GTATAGG128450.010.9477371
ACACATG1181900.010.873026
ACATGAC938200.010.8173058
GTATAGA264300.010.76577951
CTATACT208000.010.734324
CATGACA949300.010.4978049
GTACTAG143050.010.4879391
CTAGTAC112800.010.3764033
TACCGTG87650.010.3463587
CACATGA1144400.010.3426657
CCGTGAG89300.010.3125459
TCATACA1362850.010.2271752
TAGTACT216400.010.0569894
ATCATAC1329650.09.9817561
ACCGTGA113850.09.9046458