Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946131.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38882798 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 15585 | 0.0 | 12.486786 | 5 |
TATACTG | 18240 | 0.0 | 11.6485195 | 5 |
GTCGCGC | 2010 | 0.0 | 11.457728 | 8 |
CCGTGAG | 10580 | 0.0 | 11.149741 | 9 |
ATACCGT | 13220 | 0.0 | 11.057317 | 6 |
TCTATAC | 25380 | 0.0 | 11.002464 | 3 |
TACCGTG | 12845 | 0.0 | 10.684727 | 7 |
GAGCGCG | 2525 | 0.0 | 10.610312 | 7 |
GTATAGA | 26580 | 0.0 | 10.58039 | 1 |
CATACAC | 110175 | 0.0 | 10.500832 | 3 |
TAGGCTG | 11785 | 0.0 | 10.490189 | 5 |
CTATACT | 19935 | 0.0 | 10.39962 | 4 |
ACATGAC | 84690 | 0.0 | 10.255771 | 8 |
CTAGGCT | 10625 | 0.0 | 10.087906 | 4 |
ACACATG | 112770 | 0.0 | 10.065709 | 6 |
CTAGTAC | 14095 | 0.0 | 10.005788 | 3 |
CACATGA | 109350 | 0.0 | 9.937651 | 7 |
CATGACA | 87095 | 0.0 | 9.918112 | 9 |
ACCGTGA | 14410 | 0.0 | 9.915351 | 8 |
GTATATA | 56400 | 0.0 | 9.839169 | 1 |