Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946147.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 46287486 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 56341 | 0.12171972355551994 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 15965 | 0.0 | 14.012722 | 5 |
TACCGTG | 11555 | 0.0 | 12.690191 | 7 |
TATACTG | 23780 | 0.0 | 12.312909 | 5 |
ATACCGT | 14715 | 0.0 | 12.168839 | 6 |
TCTATAC | 30060 | 0.0 | 12.085814 | 3 |
CTATACT | 24440 | 0.0 | 11.691959 | 4 |
CATACAC | 155430 | 0.0 | 11.547826 | 3 |
ACATGAC | 125595 | 0.0 | 11.544254 | 8 |
CCGTGAG | 11710 | 0.0 | 11.478686 | 9 |
GTATAGA | 33290 | 0.0 | 11.314158 | 1 |
ACACATG | 149025 | 0.0 | 11.287221 | 6 |
CATGACA | 128050 | 0.0 | 11.172442 | 9 |
CACATGA | 144940 | 0.0 | 11.011916 | 7 |
ACCGTGA | 15345 | 0.0 | 10.719738 | 8 |
CTAGTAC | 14895 | 0.0 | 10.69657 | 3 |
TCATACA | 168440 | 0.0 | 10.502452 | 2 |
ATCATAC | 170280 | 0.0 | 10.153916 | 1 |
GTATTAG | 26285 | 0.0 | 10.071729 | 1 |
GTACTAG | 18165 | 0.0 | 10.043842 | 1 |
CTATACC | 24275 | 0.0 | 10.009588 | 4 |