Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946086.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 61264762 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 8865 | 0.0 | 8.889424 | 1 |
GGTCGCC | 6635 | 0.0 | 7.641934 | 63 |
TATGCCG | 6920 | 0.0 | 7.1756034 | 63 |
GAGCGTC | 9220 | 0.0 | 6.677481 | 29 |
CGTATGC | 7885 | 0.0 | 6.6117477 | 61 |
CGAGATC | 19980 | 0.0 | 6.4758897 | 18 |
GCGTCGT | 10020 | 0.0 | 6.458485 | 31 |
AGCGTCG | 9485 | 0.0 | 6.4538817 | 30 |
CCGAGAT | 24380 | 0.0 | 6.052939 | 17 |
AAGAGCG | 22280 | 0.0 | 5.840158 | 27 |
ATGCCGT | 8040 | 0.0 | 5.8280625 | 64 |
TCGGAAG | 22985 | 0.0 | 5.8128448 | 23 |
AATGCCG | 11400 | 0.0 | 5.7660785 | 13 |
TGCCGTC | 8285 | 0.0 | 5.74054 | 65 |
GAGATCG | 23095 | 0.0 | 5.719939 | 19 |
GCTGAAC | 15200 | 0.0 | 5.681381 | 11 |
GAGACCG | 11935 | 0.0 | 5.5926127 | 50 |
GTCGTGT | 12110 | 0.0 | 5.575482 | 33 |
CGCCGTA | 6480 | 0.0 | 5.558686 | 66 |
GTATGCC | 9070 | 0.0 | 5.555691 | 62 |