Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946212.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26576738 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTGCG | 1625 | 0.0 | 14.458402 | 9 |
TATACTG | 13605 | 0.0 | 13.678275 | 5 |
CTATACT | 14160 | 0.0 | 13.576605 | 4 |
ACATGAC | 47800 | 0.0 | 12.8878145 | 8 |
CATACAC | 59975 | 0.0 | 12.829495 | 3 |
CATGACA | 48415 | 0.0 | 12.529967 | 9 |
ACACATG | 60260 | 0.0 | 12.328692 | 6 |
GTGTATG | 57910 | 0.0 | 12.191055 | 1 |
GGACCGT | 2710 | 0.0 | 12.137885 | 6 |
GTATAGA | 18060 | 0.0 | 12.11822 | 1 |
TCTATAC | 16890 | 0.0 | 12.022235 | 3 |
TATACTA | 22960 | 0.0 | 11.830161 | 5 |
CACATGA | 58440 | 0.0 | 11.691233 | 7 |
GTATATA | 36440 | 0.0 | 11.637242 | 1 |
TATACCG | 7980 | 0.0 | 11.483292 | 5 |
GTATAGG | 9845 | 0.0 | 11.473585 | 1 |
GTATTAT | 21710 | 0.0 | 11.446631 | 1 |
TCATACA | 68425 | 0.0 | 11.089735 | 2 |
TATACAG | 12220 | 0.0 | 11.075312 | 5 |
ATCATAC | 66745 | 0.0 | 11.042735 | 1 |