Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946103.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 45244744 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 6385 | 0.0 | 21.2261 | 63 |
GGTCGCC | 6410 | 0.0 | 19.99303 | 63 |
CGGCATT | 8775 | 0.0 | 19.705982 | 1 |
CGTATGC | 7200 | 0.0 | 18.922747 | 61 |
ATGCCGT | 7420 | 0.0 | 18.504429 | 64 |
CGCCGTA | 6465 | 0.0 | 17.708189 | 66 |
GTATGCC | 7930 | 0.0 | 17.490805 | 62 |
TGCCGTC | 7725 | 0.0 | 17.365587 | 65 |
GCCGTAT | 7195 | 0.0 | 15.616973 | 67 |
GCCGTCT | 8595 | 0.0 | 15.566973 | 66 |
CGTGTAG | 9680 | 0.0 | 15.371168 | 35 |
TGGTCGC | 7870 | 0.0 | 15.259394 | 62 |
CGAGATC | 20110 | 0.0 | 14.698261 | 18 |
AGCGTCG | 10375 | 0.0 | 14.568928 | 30 |
CCGAGAT | 20765 | 0.0 | 14.40425 | 17 |
CCTGCTG | 12960 | 0.0 | 13.92293 | 8 |
GAGCGTC | 10755 | 0.0 | 13.892069 | 29 |
GCTGAAC | 13235 | 0.0 | 13.581211 | 11 |
CCGTATC | 8490 | 0.0 | 13.400045 | 68 |
GAGACCG | 11035 | 0.0 | 13.315405 | 50 |