FastQCFastQC Report
Tue 15 Nov 2016
SRR1945891.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945891.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44227838
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG154600.018.3631635
AGACCGC178850.017.1893194
TACCGTG122650.016.9729377
GTACTAG180000.016.1788081
GTATAGA253950.016.006411
TCTATAC227350.015.8580733
CCGTGAG130200.015.5549619
ATACCGT130300.015.36376
CTATACT168000.014.4654264
TATACTG176000.013.7001315
CTAGTAC135500.013.3905373
CATACAC1190250.013.21015553
ACCGTGA176900.013.1225878
TATACAG150650.013.1038895
CTAGGCT99650.013.0191254
TACTAGG198000.012.9962662
ACACATG1142050.012.9862146
GTGTATG1149750.012.836291
TAGTACT254200.012.7592034
ACATGAC939150.012.7492548