Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946168.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35721248 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGAGC | 15990 | 0.0 | 13.557988 | 94 |
TATACCG | 11250 | 0.0 | 12.230241 | 5 |
TATACTG | 17475 | 0.0 | 11.904372 | 5 |
TCTATAC | 22175 | 0.0 | 11.58921 | 3 |
CTATACT | 18930 | 0.0 | 11.095514 | 4 |
ACATGAC | 88410 | 0.0 | 10.56468 | 8 |
GTATATA | 48385 | 0.0 | 10.418569 | 1 |
CATACAC | 111825 | 0.0 | 10.385795 | 3 |
ACACATG | 111735 | 0.0 | 10.34716 | 6 |
GTATAGA | 23655 | 0.0 | 10.326988 | 1 |
TACCGTG | 9105 | 0.0 | 10.315032 | 7 |
TATACAG | 15810 | 0.0 | 10.30665 | 5 |
GTATAGG | 12735 | 0.0 | 10.200922 | 1 |
CATGACA | 91040 | 0.0 | 10.109969 | 9 |
CACATGA | 108320 | 0.0 | 10.079404 | 7 |
GAGCGCG | 2565 | 0.0 | 9.703068 | 7 |
GTATTAG | 20865 | 0.0 | 9.70017 | 1 |
CCGTGAG | 8655 | 0.0 | 9.657817 | 9 |
GTGTATG | 104725 | 0.0 | 9.519297 | 1 |
TAATACT | 27030 | 0.0 | 9.45678 | 4 |