FastQCFastQC Report
Wed 16 Nov 2016
SRR1945776.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945776.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109519720
Sequences flagged as poor quality0
Sequence length101
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC175850.08.7380948-49
GCCGTCT186650.08.07641748-49
ATGCCGT203400.07.701092246-47
GAGCACA459150.07.6163859
TATGCCG222000.07.572416346-47
TCGGAAG496650.07.5046813
GCACACG246500.07.012768310-11
GTATGCC239550.06.893702544-45
AGAGCAC501750.06.88627778
CGTATGC250750.06.858169644-45
CATCACG318500.05.835393432-33
CACACGT303500.05.730426312-13
CAGTCAC349700.05.577816526-27
CGTCTGA334100.05.550515716-17
ACGTCTG324000.05.49269714-15
GATCGGA638250.05.46192651
CGGAAGA750150.05.39919044
ATCGGAA783400.05.3501422