FastQCFastQC Report
Tue 15 Nov 2016
SRR1946197.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946197.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20276476
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG71050.015.4789065
CTATACT102000.014.8369364
TATACTG99050.014.6145265
GTCGCGC8850.014.3386738
TCTATAC125450.013.5620833
GTATAGA130050.013.4996181
CATACAC426650.013.2740613
ACATGAC318350.012.8293138
CCGTGAG53250.012.7978469
CTAGTAC72200.012.7587283
TAGTACT128200.012.7579154
GTGTATG411950.012.7509531
ACACATG441800.012.6912166
GTACTAG85600.012.5367231
CCGTGCC16350.012.3605919
GTATTAT161350.012.3394091
TACCGTG50250.012.2524727
CATGACA328750.012.1661259
ATACCGT61050.012.1635386
CACATGA426150.012.109567