Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946178.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34718860 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12235 | 0.0 | 13.089151 | 5 |
GTCGCGC | 1875 | 0.0 | 12.273376 | 8 |
ATACCGT | 10905 | 0.0 | 12.058679 | 6 |
TATACTG | 16270 | 0.0 | 11.690378 | 5 |
CTAGTAC | 12990 | 0.0 | 11.572435 | 3 |
TCTATAC | 21885 | 0.0 | 11.290759 | 3 |
TACCGTG | 10325 | 0.0 | 11.189545 | 7 |
TATGAGC | 15480 | 0.0 | 11.114648 | 94 |
CCGTGAG | 9440 | 0.0 | 11.094469 | 9 |
ACCGTGA | 12685 | 0.0 | 11.07006 | 8 |
GTATAGA | 24285 | 0.0 | 10.967258 | 1 |
CTATACT | 16920 | 0.0 | 10.689347 | 4 |
CATACAC | 101185 | 0.0 | 10.659571 | 3 |
ACATGAC | 80445 | 0.0 | 10.491033 | 8 |
ACACATG | 97320 | 0.0 | 10.351244 | 6 |
CACATGA | 93585 | 0.0 | 10.192273 | 7 |
TAGTACT | 24220 | 0.0 | 10.183006 | 4 |
GTATAGG | 12420 | 0.0 | 10.078126 | 1 |
GTACTAC | 14975 | 0.0 | 10.035767 | 6 |
TATACAG | 14930 | 0.0 | 10.034413 | 5 |