FastQCFastQC Report
Tue 15 Nov 2016
SRR1946237.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946237.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23487592
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG86200.015.6480685
TACCGTG60500.014.8376177
CCGTGAG54600.014.1168369
TATACTG109150.014.0371855
GTCGCGC9750.013.9791098
TCTATAC149300.013.7879733
ATACCGT71900.013.6616626
CTATACT116200.013.5495484
CATACAC596350.013.4923843
ACATGAC504500.013.0795298
ACCGTGA75750.012.9052628
ACACATG614950.012.7403666
GTATAGA161350.012.6900231
CATGACA522350.012.5425939
GTGTATG566350.012.5414121
CACATGA597750.012.3521577
CTAGTAC74200.012.0347173
TCATACA663950.011.8356632
GTATATA369800.011.7101671
TATACAG108950.011.647235