FastQCFastQC Report
Tue 15 Nov 2016
SRR1946241.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946241.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18925912
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG63050.015.8028035
TATACTG88600.015.2240965
CATACAC467450.014.2267153
TCTATAC115250.014.1912833
CTATACT93100.013.932944
TATACAG82450.013.4525535
ACACATG476850.013.3844756
GTGTATG446550.013.1252391
TAATACT144800.013.0479074
ACATGAC370750.012.9427918
TCATACA524400.012.6010282
CACATGA450800.012.4793977
ATCATAC494200.012.3550691
CATGACA384050.012.31100759
GTATATA260200.012.2305891
GTATAGA117800.012.22880651
ATAATAC137150.011.7881593
GTATTAT136300.011.7433221
ATACCGT57100.011.6878766
TATACTA152900.011.6804485