Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945831.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18355742 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGCG | 945 | 0.0 | 19.397572 | 7 |
TATACTG | 9170 | 0.0 | 17.070501 | 5 |
TATACCG | 5785 | 0.0 | 16.414186 | 5 |
CTATACT | 10000 | 0.0 | 15.986015 | 4 |
CCGTGAG | 4265 | 0.0 | 15.317664 | 9 |
TCTATAC | 12145 | 0.0 | 14.944272 | 3 |
ATACCGT | 5720 | 0.0 | 13.969524 | 6 |
CCGTGCG | 1010 | 0.0 | 13.9603615 | 9 |
GCCGTGC | 1995 | 0.0 | 13.8999815 | 8 |
GTGTATG | 49015 | 0.0 | 13.829047 | 1 |
CATACAC | 51225 | 0.0 | 13.575981 | 3 |
ACATGAC | 37765 | 0.0 | 13.503468 | 8 |
CATGACA | 38125 | 0.0 | 13.351049 | 9 |
TAATACT | 16570 | 0.0 | 13.109338 | 4 |
ACACATG | 50730 | 0.0 | 12.915958 | 6 |
ACCGTGA | 5500 | 0.0 | 12.732939 | 8 |
GCGCGCC | 1220 | 0.0 | 12.713083 | 9 |
CACATGA | 48445 | 0.0 | 12.612726 | 7 |
GACCGTG | 2480 | 0.0 | 12.508545 | 7 |
TCATACA | 56085 | 0.0 | 12.175924 | 2 |