FastQCFastQC Report
Tue 15 Nov 2016
SRR1946177.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946177.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43559496
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG220900.011.9057735
TATACCG133800.011.8638575
GGACCGT44900.011.4013016
CTATACT231150.011.2795234
TCTATAC277500.011.25758653
CCGTGCG25750.011.1258049
GTATAGG154700.011.0727151
GCCGTGC50050.010.7912458
GTATAGA292050.010.5381311
CATACAC1100200.010.2306173
TATACAG187600.010.188895
TATGAGC182950.010.04895494
GTATATA574550.010.0089021
ACACATG1074450.09.9223366
ACATGAC811750.09.89353758
TAGACCG99250.09.7003775
CATGACA815150.09.6736859
CACATGA1063400.09.5087337
GTATTAG259050.09.500821
GTGTATG1047600.09.4648131