Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946250.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21330818 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATACT | 10975 | 0.0 | 15.546242 | 4 |
TCTATAC | 13190 | 0.0 | 14.182821 | 3 |
TATACTG | 10475 | 0.0 | 14.176459 | 5 |
TATACCG | 7525 | 0.0 | 14.051113 | 5 |
GTCGCGC | 1340 | 0.0 | 14.02722 | 8 |
CTAGGCT | 5375 | 0.0 | 13.729177 | 4 |
CATACAC | 48420 | 0.0 | 13.434937 | 3 |
GTATAGA | 14765 | 0.0 | 13.164871 | 1 |
GTGTATG | 46345 | 0.0 | 13.110624 | 1 |
TATACAG | 9445 | 0.0 | 12.985937 | 5 |
ACATGAC | 37565 | 0.0 | 12.87207 | 8 |
ACACATG | 48125 | 0.0 | 12.84031 | 6 |
GTATATA | 30980 | 0.0 | 12.822156 | 1 |
TACCGTG | 5785 | 0.0 | 12.590551 | 7 |
CATGACA | 38735 | 0.0 | 12.434682 | 9 |
TAATACT | 16975 | 0.0 | 12.432541 | 4 |
CACATGA | 46530 | 0.0 | 12.33102 | 7 |
GTATAGG | 8240 | 0.0 | 12.16613 | 1 |
TATACTA | 18925 | 0.0 | 12.1424885 | 5 |
TAGTACT | 11595 | 0.0 | 12.039515 | 4 |