FastQCFastQC Report
Tue 15 Nov 2016
SRR1946208.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946208.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31885692
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG97600.016.3288235
TATACTG153550.013.6549455
CTGAGCG73100.013.64916594
CTATACT159100.013.5331724
TCTATAC193600.013.4040473
TATACAG144800.013.01909355
GTATAGA206050.012.8536461
CATACAC844150.012.5860973
ATACCGT93700.012.4424176
TAATACT243900.012.2395724
ACATGAC690800.012.0718618
ACACATG847450.012.0153686
AGACCGC37500.011.92284794
CATGACA700500.011.715799
GTATATA435750.011.7026011
GTATAGG106550.011.611621
CACATGA836300.011.5233757
CTATACC142700.011.4646174
TCATACA936950.011.250432
GTGTATG810900.011.2254611