FastQCFastQC Report
Tue 15 Nov 2016
SRR1946139.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946139.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35438744
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG183300.011.9766075
CTATACT185950.011.1512344
GTATATA499850.010.7350261
CATACAC1076350.010.6764823
ACACATG1096900.010.3992316
ACATGAC901750.010.329388
TATACCG113450.010.1517515
TCTATAC225550.010.1106583
CACATGA1062900.010.0812977
CATGACA922000.010.0565569
GTATAGA230050.09.8737481
GTGTATG1043650.09.8683921
GTATTAG201250.09.861291
TATACAG169800.09.7450565
ATCATAC1106100.09.6853761
TCATACA1176050.09.5875892
TATACTA319700.09.5135155
GTATTAT263550.09.4930511
GAGCGCG21450.09.4213937
CCGTGCG21950.09.4204429