Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946269.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 29011134 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 9970 | 0.0 | 15.844181 | 5 |
TATACTG | 14275 | 0.0 | 14.556998 | 5 |
CTATACT | 14155 | 0.0 | 13.983066 | 4 |
CATACAC | 64230 | 0.0 | 13.461059 | 3 |
TCTATAC | 17710 | 0.0 | 13.379731 | 3 |
ACATGAC | 53295 | 0.0 | 13.17611 | 8 |
ACACATG | 63960 | 0.0 | 13.052833 | 6 |
TACCGTG | 7730 | 0.0 | 12.952375 | 7 |
CATGACA | 54725 | 0.0 | 12.805292 | 9 |
CACATGA | 62175 | 0.0 | 12.587738 | 7 |
GTGTATG | 61530 | 0.0 | 11.944403 | 1 |
GTATAGA | 19030 | 0.0 | 11.917318 | 1 |
ACAGTGC | 5430 | 0.0 | 11.858885 | 8 |
ATACCGT | 8975 | 0.0 | 11.679942 | 6 |
TCATACA | 73485 | 0.0 | 11.61335 | 2 |
GTATATA | 40070 | 0.0 | 11.519137 | 1 |
CTATACC | 14450 | 0.0 | 11.517695 | 4 |
ATCATAC | 71630 | 0.0 | 11.455705 | 1 |
ACTGTGC | 4440 | 0.0 | 11.433097 | 8 |
TATACAG | 12705 | 0.0 | 11.323285 | 5 |