FastQCFastQC Report
Tue 15 Nov 2016
SRR1946187.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946187.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33282458
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG120700.012.9290715
TATACTG163800.012.3106195
TACCGTG84100.011.955837
ATACCGT104000.011.7912376
CTATACT180800.011.59495454
TCTATAC213100.011.2054143
TATGAGC152200.011.20016594
CCGTGAG75450.010.959619
GTATAGA225450.010.84723951
CATACAC897700.010.5666563
ACATGAC729200.010.4313368
GTCGCGC20750.010.4154858
ACACATG880550.010.1913446
CATGACA743100.010.0529059
TATACAG156650.09.9019365
GTATATA466450.09.8605211
GTATAGG121650.09.8581221
GTGTATG852150.09.7794361
CACATGA854300.09.756757
ACCGTGA103200.09.7425778