Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946229.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23930002 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATACT | 11820 | 0.0 | 15.946315 | 4 |
TATACTG | 11750 | 0.0 | 15.518029 | 5 |
TCTATAC | 14200 | 0.0 | 15.425207 | 3 |
TATACCG | 7285 | 0.0 | 14.191745 | 5 |
CATACAC | 63665 | 0.0 | 14.06461 | 3 |
ACATGAC | 51950 | 0.0 | 13.649747 | 8 |
ACACATG | 63395 | 0.0 | 13.513167 | 6 |
GTGTATG | 58950 | 0.0 | 13.379797 | 1 |
TATACAG | 10635 | 0.0 | 13.344803 | 5 |
CATGACA | 52505 | 0.0 | 13.299615 | 9 |
TAATACT | 18620 | 0.0 | 13.227722 | 4 |
CACATGA | 62275 | 0.0 | 12.956248 | 7 |
GTATATA | 33430 | 0.0 | 12.655597 | 1 |
TCATACA | 71030 | 0.0 | 12.473921 | 2 |
ATCATAC | 67535 | 0.0 | 12.403676 | 1 |
GTATTAG | 13995 | 0.0 | 12.072045 | 1 |
GTCTAGG | 5285 | 0.0 | 12.021208 | 1 |
GATTGAG | 56565 | 0.0 | 11.996156 | 7 |
TGTATGA | 64040 | 0.0 | 11.934458 | 2 |
GTATTAT | 18120 | 0.0 | 11.739228 | 1 |