Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946246.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30285418 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATACT | 15365 | 0.0 | 10.958023 | 4 |
GTCGCGC | 1145 | 0.0 | 10.676178 | 8 |
TATACCG | 9410 | 0.0 | 10.59587 | 5 |
TATACTG | 14390 | 0.0 | 10.458744 | 5 |
GTGCTAG | 4855 | 0.0 | 9.983042 | 1 |
TCTATAC | 18500 | 0.0 | 9.939334 | 3 |
CATACAC | 78600 | 0.0 | 9.878176 | 3 |
ACATGAC | 63520 | 0.0 | 9.681557 | 8 |
CCGTGCG | 1655 | 0.0 | 9.659183 | 9 |
ACTGTGC | 4195 | 0.0 | 9.63861 | 8 |
ACACATG | 78505 | 0.0 | 9.474848 | 6 |
GTATAGA | 19735 | 0.0 | 9.442194 | 1 |
GTATAGG | 10445 | 0.0 | 9.415703 | 1 |
CATGACA | 64920 | 0.0 | 9.371632 | 9 |
GTATTAG | 17605 | 0.0 | 9.32834 | 1 |
GTGTATG | 78200 | 0.0 | 9.242711 | 1 |
TAGGCTG | 8925 | 0.0 | 9.221895 | 5 |
TACCGTG | 6930 | 0.0 | 9.1595545 | 7 |
TAGTACT | 15735 | 0.0 | 9.086331 | 4 |
CACATGA | 76005 | 0.0 | 9.044385 | 7 |