Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945976.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 62730032 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 130771 | 0.2084663371445435 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 25530 | 0.0 | 49.170616 | 1 |
CGAGATC | 57610 | 0.0 | 39.742294 | 18 |
GCATTCC | 32285 | 0.0 | 37.8823 | 3 |
CCGAGAT | 62180 | 0.0 | 36.926003 | 17 |
GCTGAAC | 31285 | 0.0 | 36.881855 | 11 |
TATGCCG | 23775 | 0.0 | 36.547325 | 63 |
CCTGCTG | 32760 | 0.0 | 36.439583 | 8 |
GGCATTC | 33930 | 0.0 | 35.985287 | 2 |
ATTCCTG | 33680 | 0.0 | 35.61984 | 5 |
AACCGAG | 31195 | 0.0 | 34.80449 | 15 |
CGTATGC | 26085 | 0.0 | 34.035744 | 61 |
TTCCTGC | 35740 | 0.0 | 33.616753 | 6 |
GGGCGCC | 6680 | 0.0 | 33.318085 | 63 |
TGAACCG | 34370 | 0.0 | 33.219498 | 13 |
GTATGCC | 26820 | 0.0 | 32.63394 | 62 |
GAACCGA | 33040 | 0.0 | 32.374256 | 14 |
ATGCCGT | 24040 | 0.0 | 32.242878 | 64 |
TGCCGTC | 23815 | 0.0 | 32.091885 | 65 |
GAGACCG | 37535 | 0.0 | 31.943836 | 50 |
CTGAACC | 36905 | 0.0 | 31.566605 | 12 |