Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946164.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 32743586 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGAGC | 15895 | 0.0 | 16.944315 | 94 |
TATACCG | 11660 | 0.0 | 14.421588 | 5 |
TATACTG | 15940 | 0.0 | 12.995077 | 5 |
TCTATAC | 19845 | 0.0 | 12.716058 | 3 |
TAGGCTG | 11360 | 0.0 | 12.693711 | 5 |
CTAGGCT | 10160 | 0.0 | 12.674614 | 4 |
GCTGTCC | 9840 | 0.0 | 12.411116 | 8 |
CTATACT | 16695 | 0.0 | 12.3300705 | 4 |
TACCGTG | 9640 | 0.0 | 12.083847 | 7 |
ATACCGT | 10040 | 0.0 | 12.023475 | 6 |
CTGTCCC | 11680 | 0.0 | 11.742825 | 9 |
GTATAGA | 20565 | 0.0 | 11.720367 | 1 |
CCGTGAG | 7485 | 0.0 | 11.609473 | 9 |
TATACAG | 14740 | 0.0 | 11.567453 | 5 |
GTACTAG | 12985 | 0.0 | 11.565082 | 1 |
GTATATA | 46840 | 0.0 | 11.276542 | 1 |
CATACAC | 99320 | 0.0 | 11.057357 | 3 |
TAGTACT | 19880 | 0.0 | 11.040237 | 4 |
ACCGTGA | 10450 | 0.0 | 11.01241 | 8 |
ACATGAC | 73575 | 0.0 | 11.006255 | 8 |