Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945789.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39946158 |
Sequences flagged as poor quality | 0 |
Sequence length | 72 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 8170 | 0.0 | 8.020307 | 1 |
CCGAGAT | 13445 | 0.0 | 7.905582 | 17 |
AATGCCG | 10005 | 0.0 | 6.24863 | 13 |
CGAGATC | 17685 | 0.0 | 6.084915 | 18 |
GGCATTC | 11030 | 0.0 | 5.9632616 | 2 |
GCTGAAC | 8225 | 0.0 | 5.9606137 | 11 |
CCTGCTG | 8780 | 0.0 | 5.9210596 | 8 |
GCATTCC | 12395 | 0.0 | 5.7314286 | 3 |
ATGCCGA | 10505 | 0.0 | 5.7016034 | 14 |
TGCCGAG | 11660 | 0.0 | 5.1649485 | 15 |
CAACCTC | 16525 | 0.0 | 5.1099515 | 66 |