Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946254.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30694324 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1530 | 0.0 | 13.213814 | 8 |
TCTATAC | 18585 | 0.0 | 11.741023 | 3 |
TATACCG | 10800 | 0.0 | 11.409402 | 5 |
CCGTGAG | 6595 | 0.0 | 11.335571 | 9 |
TATACTG | 14280 | 0.0 | 11.29669 | 5 |
TACCGTG | 8065 | 0.0 | 11.135287 | 7 |
CTATACT | 15170 | 0.0 | 11.067698 | 4 |
CATACAC | 89860 | 0.0 | 10.718007 | 3 |
GTATAGA | 20000 | 0.0 | 10.610736 | 1 |
ACACATG | 88330 | 0.0 | 10.544828 | 6 |
ACATGAC | 69755 | 0.0 | 10.326059 | 8 |
TCGCGCG | 2105 | 0.0 | 10.274645 | 9 |
ATACCGT | 9195 | 0.0 | 10.073439 | 6 |
CACATGA | 85830 | 0.0 | 9.992132 | 7 |
CATGACA | 71900 | 0.0 | 9.952837 | 9 |
CTAGGCT | 8245 | 0.0 | 9.753941 | 4 |
TATACAG | 12950 | 0.0 | 9.660445 | 5 |
TCATACA | 99135 | 0.0 | 9.610137 | 2 |
TAGGCTG | 9530 | 0.0 | 9.574016 | 5 |
GTGTATG | 85770 | 0.0 | 9.545812 | 1 |