Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946227.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35468330 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 38345 | 0.10811053128241448 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10930 | 0.0 | 15.656013 | 5 |
CTATACT | 16830 | 0.0 | 15.195491 | 4 |
TATACTG | 16555 | 0.0 | 14.96516 | 5 |
CATACAC | 112490 | 0.0 | 14.919456 | 3 |
TCTATAC | 20655 | 0.0 | 14.384362 | 3 |
ACACATG | 117895 | 0.0 | 14.32685 | 6 |
ACATGAC | 94125 | 0.0 | 14.298261 | 8 |
CATGACA | 96535 | 0.0 | 13.774479 | 9 |
GTGTATG | 107270 | 0.0 | 13.74341 | 1 |
CACATGA | 111690 | 0.0 | 13.649498 | 7 |
TCATACA | 126955 | 0.0 | 13.280439 | 2 |
ATCATAC | 121740 | 0.0 | 13.257487 | 1 |
TATACAG | 15770 | 0.0 | 13.23583 | 5 |
GTATATA | 50165 | 0.0 | 12.996793 | 1 |
GATTGAG | 102295 | 0.0 | 12.995978 | 7 |
ATACCGT | 9860 | 0.0 | 12.72985 | 6 |
GTATAGA | 22395 | 0.0 | 12.645012 | 1 |
TTGAGTA | 109010 | 0.0 | 12.607763 | 9 |
ATTGAGT | 111400 | 0.0 | 12.604247 | 8 |
GTATAGG | 11975 | 0.0 | 12.413245 | 1 |