FastQCFastQC Report
Tue 15 Nov 2016
SRR1946202.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946202.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20908174
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT105050.014.0926814
CATACAC517000.013.5909413
TATACCG66050.013.4483225
TATACTG105950.013.3963075
ACATGAC420300.012.7698538
ACACATG515050.012.7475346
CATGACA430000.012.44899759
TCTATAC124450.012.3873333
CACATGA499250.012.2095887
GTATAGG70050.012.0953971
TCATACA575350.012.0331362
GTATATA302100.011.96647551
TATACAG87750.011.94364555
GTATTAT166350.011.7996471
ATCATAC548750.011.7259971
GTGTATG492100.011.6793331
GTCGCGC8055.456968E-1211.6765168
GTATTAG126200.011.4880711
TATACTA202600.011.2507495
TAGGGTG46050.011.2264435