FastQCFastQC Report
Tue 15 Nov 2016
SRR1945943.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945943.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41556590
Sequences flagged as poor quality0
Sequence length76
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG465700.11206405530386396Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA84950.022.00557956
GGTCGCC99250.021.79452753
GCCGTAT86850.021.68756757
CGAGATC259950.020.97077418
CCGAGAT262300.020.84689317
TGGTCGC116800.018.45872752
CCGTATC99900.017.87346858
TATGCCG92900.017.82642463
CGTATGC109450.016.4430561
CGTATCA117000.015.32118859
GTATGCC113000.015.02828262
ATCAGCC154050.015.0204752
GGCTGAT155500.014.8579032
GTCGCCG151050.014.52961554
ATGCCGT100900.014.50261564
CGGCATT88700.014.1070581
GAGACCG270500.014.0106650
TCGTATG152250.013.93603960
TGCCGTC93750.013.92800265
CGAGACC275550.013.73933249