FastQCFastQC Report
Tue 15 Nov 2016
SRR1946109.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946109.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30446750
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC136200.013.90874394
GTCGCGC25500.013.0736568
TATACCG98700.012.8446615
TATACTG147200.012.7274425
GTATAGA187450.012.2282881
ACATGAC662300.011.9035048
TCGCGCG28650.011.8001889
CTATACT161350.011.7930044
CATACAC913000.011.767393
GTATATA426150.011.7075371
CTAGGCT88600.011.6661434
TCTATAC188050.011.5662463
ACACATG893400.011.4522336
CATGACA686500.011.2787549
TAGGCTG100500.011.1662635
CACATGA846400.010.9896937
GTATTAG173350.010.7792571
TCATACA1007800.010.6138272
GTGTATG848400.010.5796711
CTGTCCC113200.010.4528619