Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946117.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35706752 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 13245 | 0.0 | 16.46508 | 5 |
TACCGTG | 11010 | 0.0 | 15.1107855 | 7 |
ATACCGT | 11255 | 0.0 | 14.782102 | 6 |
CTAGTAC | 12150 | 0.0 | 14.46984 | 3 |
CCGTGAG | 9670 | 0.0 | 14.094112 | 9 |
TCTATAC | 22090 | 0.0 | 13.853314 | 3 |
ACCGTGA | 12745 | 0.0 | 13.496226 | 8 |
TATACTG | 17320 | 0.0 | 13.133949 | 5 |
CTATACT | 17765 | 0.0 | 12.859884 | 4 |
GTACTAG | 16605 | 0.0 | 12.769545 | 1 |
TAGTACT | 24025 | 0.0 | 12.483123 | 4 |
ACATGAC | 85675 | 0.0 | 12.298513 | 8 |
GTACTAC | 13480 | 0.0 | 12.167852 | 6 |
GTATAGA | 23535 | 0.0 | 12.005992 | 1 |
CATACAC | 121640 | 0.0 | 11.972186 | 3 |
CTATACC | 18145 | 0.0 | 11.839278 | 4 |
CATGACA | 87715 | 0.0 | 11.819467 | 9 |
ACACATG | 119695 | 0.0 | 11.751928 | 6 |
TATACAG | 14970 | 0.0 | 11.647963 | 5 |
CACATGA | 115100 | 0.0 | 11.61249 | 7 |