Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946054.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24285860 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 12310 | 0.0 | 13.362095 | 5 |
TATACCG | 7895 | 0.0 | 12.2029915 | 5 |
CTATACT | 11875 | 0.0 | 12.031078 | 4 |
CATACAC | 82145 | 0.0 | 12.020139 | 3 |
ACTGTGC | 4090 | 0.0 | 11.950258 | 8 |
ACACATG | 82205 | 0.0 | 11.834141 | 6 |
ACATGAC | 60040 | 0.0 | 11.69438 | 8 |
TCTATAC | 14535 | 0.0 | 11.445975 | 3 |
CACATGA | 78875 | 0.0 | 11.445969 | 7 |
CATGACA | 62165 | 0.0 | 11.26462 | 9 |
GTATATA | 37805 | 0.0 | 11.235217 | 1 |
TCATACA | 89285 | 0.0 | 10.900996 | 2 |
TATACAG | 11460 | 0.0 | 10.785386 | 5 |
CCGTGAG | 6495 | 0.0 | 10.781602 | 9 |
GTGTATG | 76655 | 0.0 | 10.762968 | 1 |
ATCATAC | 90235 | 0.0 | 10.571482 | 1 |
GTACTAG | 10790 | 0.0 | 10.506028 | 1 |
GACCGTG | 4430 | 0.0 | 10.396495 | 7 |
GTATTAG | 13565 | 0.0 | 10.298634 | 1 |
GATTGAG | 73020 | 0.0 | 10.175473 | 7 |