Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946048.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40982640 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 21390 | 0.0 | 14.71535 | 5 |
GTCGCGC | 1785 | 0.0 | 14.475504 | 8 |
TATACCG | 13355 | 0.0 | 14.281989 | 5 |
CATACAC | 118595 | 0.0 | 13.211687 | 3 |
ACATGAC | 95865 | 0.0 | 13.045395 | 8 |
GAGCGCG | 2270 | 0.0 | 12.624471 | 7 |
ACACATG | 122290 | 0.0 | 12.592913 | 6 |
TATACAG | 19830 | 0.0 | 12.556244 | 5 |
CATGACA | 99370 | 0.0 | 12.476516 | 9 |
CACATGA | 117920 | 0.0 | 12.330548 | 7 |
GTATAGA | 25880 | 0.0 | 11.990086 | 1 |
TCTATAC | 25110 | 0.0 | 11.918499 | 3 |
GTGTATG | 113590 | 0.0 | 11.916376 | 1 |
TCATACA | 131800 | 0.0 | 11.823807 | 2 |
TAGGCTG | 12370 | 0.0 | 11.7353325 | 5 |
CTATACT | 21790 | 0.0 | 11.729257 | 4 |
GTATATA | 59235 | 0.0 | 11.580292 | 1 |
ATCATAC | 131255 | 0.0 | 11.56631 | 1 |
GCTGTCC | 10130 | 0.0 | 11.547796 | 8 |
CTAGTAC | 13170 | 0.0 | 11.379777 | 3 |