FastQCFastQC Report
Tue 15 Nov 2016
SRR1946061.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946061.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71582946
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGC2603550.36371093193063053TruSeq Adapter, Index 5 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG410150.033.57304846-47
TGCCGTC420650.032.6329548-49
GAGCACA857150.032.2881059
ATGCCGT423450.032.18572246-47
GCCGTCT424450.032.113948-49
CGTATGC434950.031.59374644-45
TCGGAAG1582200.030.8770373
GTATGCC443500.030.78866444-45
AGAGCAC902250.030.690318
GAGCGTC633400.030.5353579
CGCCGTA293750.029.85161246-47
CGGAAGA1644500.029.8398724
GATCGGA1694150.029.534421
ATCGGAA1704850.029.3107362
GCCGTAT308600.028.62065746-47
GGTCGCC313750.028.41259442-43
GGGCGCC101650.027.73774542-43
GAAGAGC1780850.027.3894846
AGAGCGT719100.027.2082568
CCGTATC329600.026.72459248-49