Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946256.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30345258 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCTATAC | 17430 | 0.0 | 11.763037 | 3 |
TATACCG | 9960 | 0.0 | 11.66308 | 5 |
TATACTG | 13580 | 0.0 | 11.289988 | 5 |
GTATAGA | 19020 | 0.0 | 11.132159 | 1 |
TACCGTG | 7715 | 0.0 | 11.091927 | 7 |
TATACAG | 12070 | 0.0 | 11.026935 | 5 |
CTATACT | 13990 | 0.0 | 10.824273 | 4 |
ATACCGT | 8680 | 0.0 | 10.725238 | 6 |
CATACAC | 77670 | 0.0 | 10.528747 | 3 |
ACACATG | 78255 | 0.0 | 10.34624 | 6 |
ACATGAC | 64690 | 0.0 | 10.269448 | 8 |
GTATATA | 38915 | 0.0 | 10.120125 | 1 |
CATGACA | 66355 | 0.0 | 10.004877 | 9 |
CACATGA | 76085 | 0.0 | 9.974153 | 7 |
GTATAGG | 10190 | 0.0 | 9.881367 | 1 |
GTATTAG | 15860 | 0.0 | 9.730789 | 1 |
TAATACT | 21170 | 0.0 | 9.463446 | 4 |
TCATACA | 86480 | 0.0 | 9.428275 | 2 |
GTATTAT | 21065 | 0.0 | 9.426022 | 1 |
GTGTATG | 76875 | 0.0 | 9.266552 | 1 |