FastQCFastQC Report
Tue 15 Nov 2016
SRR1946152.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946152.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42506664
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG199500.013.428285
CTAGTAC145700.012.7416593
CTATACT213650.012.1649594
TAGTACT275900.011.3451684
TCTATAC252200.011.2745383
CATACAC1133550.011.1324833
GTACTAC170800.011.0893246
TATACCG132300.010.9770875
ACATGAC922600.010.7690258
ACACATG1118850.010.5478216
CATGACA939800.010.5319259
CCTAGTA172400.010.3049292
CACATGA1086800.010.2966667
GTATAGA266100.010.2844761
GTATAGG146750.010.2215471
TCATACA1250750.09.9616142
TAGACCG100200.09.9438955
TATACAG179000.09.8986675
GTACTAG185750.09.8474731
AGTACTA274000.09.8457725