FastQCFastQC Report
Tue 15 Nov 2016
SRR1945937.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945937.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46771672
Sequences flagged as poor quality0
Sequence length101
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTCT260550.08.27774994-95
TGCCGTC278000.08.14989794-95
CGTATGC474650.07.955585594-95
TATGCCG352850.07.783103594-95
GTATGCC402750.07.682896694-95
ATGCCGT327050.07.48499294-95
GGTCGCC119550.06.871710394-95
TCGTATG598750.06.53204994-95
CGCCGTA136600.06.273975494-95
CTCGTAT635650.06.09676792-93
CCGTCTT331850.05.764405394-95
TCGCCGT176100.05.35067694-95
TATCTCG853300.05.32979694-95
GCCAATA1020800.05.32031994-95
CGCCAAT1007500.05.31300894-95
TGGTCGC147250.05.289633394-95
GTCGCCG151850.05.25412194-95
TCTCGTA727000.05.249327792-93
ATCTCGT859750.05.1245994-95
CCGTATC199300.05.11982394-95