Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946261.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19193806 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 9980 | 0.0 | 14.73824 | 5 |
TATACCG | 6400 | 0.0 | 14.685266 | 5 |
CTAGTAC | 6735 | 0.0 | 14.586245 | 3 |
TACCGTG | 4825 | 0.0 | 13.73209 | 7 |
GTATAGA | 13115 | 0.0 | 13.708514 | 1 |
CATACAC | 40255 | 0.0 | 13.696606 | 3 |
GTCGCGC | 590 | 4.7293724E-11 | 13.539785 | 8 |
GTACTAG | 8445 | 0.0 | 13.486866 | 1 |
CTATACT | 10555 | 0.0 | 13.359734 | 4 |
ACACATG | 39880 | 0.0 | 12.961514 | 6 |
ACATGAC | 33690 | 0.0 | 12.943801 | 8 |
GTGTATG | 38670 | 0.0 | 12.937621 | 1 |
GTATAGG | 6955 | 0.0 | 12.85736 | 1 |
CATGACA | 33880 | 0.0 | 12.815632 | 9 |
TCTATAC | 13040 | 0.0 | 12.796334 | 3 |
GCCGTGC | 1960 | 0.0 | 12.467005 | 8 |
CACATGA | 39250 | 0.0 | 12.343372 | 7 |
TATACAG | 8480 | 0.0 | 12.302374 | 5 |
ATAGGAC | 6305 | 0.0 | 12.300808 | 3 |
GTATTAG | 12175 | 0.0 | 12.176906 | 1 |