Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946028.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21947924 |
Sequences flagged as poor quality | 0 |
Sequence length | 99 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTGAG | 5785 | 0.0 | 16.236778 | 9 |
TATACCG | 7370 | 0.0 | 15.962756 | 5 |
CTAGTAC | 7615 | 0.0 | 15.571309 | 3 |
TACCGTG | 5620 | 0.0 | 15.555227 | 7 |
ACCGTGA | 7240 | 0.0 | 14.515257 | 8 |
TCTATAC | 14625 | 0.0 | 13.671854 | 3 |
TATACTG | 11000 | 0.0 | 13.65415 | 5 |
CATACAC | 66275 | 0.0 | 13.548381 | 3 |
GCCGTGC | 2075 | 0.0 | 13.445842 | 8 |
ACATGAC | 53595 | 0.0 | 13.396084 | 8 |
ATACCGT | 7020 | 0.0 | 13.31416 | 6 |
ACACATG | 63710 | 0.0 | 13.305582 | 6 |
CTATACT | 11030 | 0.0 | 13.111117 | 4 |
TGTAGGG | 10315 | 0.0 | 13.078137 | 2 |
CATGACA | 55840 | 0.0 | 12.682543 | 9 |
CACATGA | 61950 | 0.0 | 12.647754 | 7 |
GACCGTG | 3100 | 0.0 | 12.600055 | 7 |
CCTAGTA | 8705 | 0.0 | 12.504439 | 2 |
GTGTATG | 63650 | 0.0 | 12.476074 | 1 |
TAGCGGG | 5925 | 0.0 | 12.399969 | 9 |