FastQCFastQC Report
Tue 15 Nov 2016
SRR1946210.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946210.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24014528
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG93200.018.252525
ATACCGT81050.016.2918996
GTCGCGC10500.015.6634428
TATACTG119200.015.4539675
TACCGTG69650.015.4498947
TCTATAC158050.015.226743
CCGTGAG60400.015.1706869
CTATACT117850.014.8369564
GTATAGA172000.014.6689391
CATACAC685100.014.3460233
ACCGTGA80850.014.0651318
GTGTATG628450.013.9242231
ACACATG703400.013.6618446
GCCGTGC25900.013.6072388
TATACAG106400.013.5589755
ACATGAC531800.013.377848
CTATACC127300.013.1078484
CATGACA545850.012.9904289
CACATGA658300.012.9343767
TCATACA754400.012.8474942