FastQCFastQC Report
Tue 15 Nov 2016
SRR1946089.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946089.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63902696
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT86600.07.1603491
TATGCCG57400.06.03328263
CGAGATC197450.05.19231318
GGTCGCC68900.05.026275663