Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946259.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30244452 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10255 | 0.0 | 15.171321 | 5 |
AGACCGG | 14820 | 0.0 | 14.590958 | 94 |
TACCGTG | 8355 | 0.0 | 13.610822 | 7 |
ATACCGT | 8840 | 0.0 | 13.502253 | 6 |
GTATAGA | 18695 | 0.0 | 13.362757 | 1 |
TCTATAC | 17090 | 0.0 | 13.230222 | 3 |
CTAGTAC | 12000 | 0.0 | 13.162007 | 3 |
GTACTAG | 15605 | 0.0 | 12.63215 | 1 |
CCGTGAG | 10350 | 0.0 | 12.43941 | 9 |
CTATACT | 13510 | 0.0 | 12.247612 | 4 |
TATACTG | 13525 | 0.0 | 12.163592 | 5 |
ACATGAC | 73060 | 0.0 | 11.90535 | 8 |
CATACAC | 86790 | 0.0 | 11.86147 | 3 |
GTGTATG | 84970 | 0.0 | 11.8322115 | 1 |
TATACAG | 12540 | 0.0 | 11.807123 | 5 |
ACACATG | 86680 | 0.0 | 11.466113 | 6 |
GTATAGG | 9790 | 0.0 | 11.437242 | 1 |
CCTAGTA | 12800 | 0.0 | 11.246376 | 2 |
CATGACA | 77225 | 0.0 | 11.146977 | 9 |
CACATGA | 85425 | 0.0 | 11.144738 | 7 |