Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946111.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41981630 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 20400 | 0.0 | 12.788904 | 5 |
TATACCG | 14195 | 0.0 | 12.054148 | 5 |
CTATACT | 22290 | 0.0 | 11.894077 | 4 |
TCTATAC | 25565 | 0.0 | 11.82333 | 3 |
TATGAGC | 18090 | 0.0 | 11.792599 | 94 |
TAGGCTG | 13195 | 0.0 | 11.507039 | 5 |
GTATAGG | 14700 | 0.0 | 11.198605 | 1 |
GCCGTGC | 5125 | 0.0 | 11.185759 | 8 |
GTCGCGC | 1920 | 0.0 | 11.01313 | 8 |
GTATAGA | 27285 | 0.0 | 10.997903 | 1 |
CATACAC | 104130 | 0.0 | 10.839043 | 3 |
ACACATG | 105580 | 0.0 | 10.521538 | 6 |
ACATGAC | 88635 | 0.0 | 10.502161 | 8 |
CTAGGCT | 10670 | 0.0 | 10.397029 | 4 |
TATACAG | 17850 | 0.0 | 10.375965 | 5 |
CTGTCCC | 13325 | 0.0 | 10.261865 | 9 |
GTATATA | 53115 | 0.0 | 10.245411 | 1 |
CATGACA | 90365 | 0.0 | 10.176328 | 9 |
CACATGA | 102690 | 0.0 | 10.14977 | 7 |
TAGTACT | 20540 | 0.0 | 9.955212 | 4 |