Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946173.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37937964 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGTAC | 13775 | 0.0 | 14.358382 | 3 |
TATACCG | 13535 | 0.0 | 14.123198 | 5 |
TACCGTG | 10705 | 0.0 | 13.689053 | 7 |
CCGTGAG | 11675 | 0.0 | 12.793233 | 9 |
TCTATAC | 24210 | 0.0 | 12.691062 | 3 |
CTATACT | 19430 | 0.0 | 12.597737 | 4 |
ACCGTGA | 14545 | 0.0 | 12.335518 | 8 |
TAGTACT | 28050 | 0.0 | 12.210187 | 4 |
TATACTG | 18660 | 0.0 | 12.182337 | 5 |
ATACCGT | 12835 | 0.0 | 12.14912 | 6 |
GTACTAC | 16090 | 0.0 | 11.617953 | 6 |
GTACTAG | 18895 | 0.0 | 11.530489 | 1 |
GTATAGG | 13380 | 0.0 | 11.42986 | 1 |
CCTAGTA | 16415 | 0.0 | 11.333833 | 2 |
CATACAC | 86040 | 0.0 | 10.931473 | 3 |
GTATAGA | 26420 | 0.0 | 10.75766 | 1 |
ACATGAC | 71640 | 0.0 | 10.581707 | 8 |
TAGGGTG | 8830 | 0.0 | 10.53177 | 5 |
ACACATG | 87220 | 0.0 | 10.46846 | 6 |
TATACAG | 16375 | 0.0 | 10.411714 | 5 |