Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945931.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18477342 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 9210 | 0.0 | 15.20949 | 5 |
TATACCG | 6095 | 0.0 | 15.193245 | 5 |
CTATACT | 9950 | 0.0 | 14.979391 | 4 |
TCTATAC | 11910 | 0.0 | 14.488716 | 3 |
CATACAC | 47295 | 0.0 | 13.630061 | 3 |
ACATGAC | 34250 | 0.0 | 13.530078 | 8 |
ATACCGT | 5520 | 0.0 | 13.368266 | 6 |
ACACATG | 46425 | 0.0 | 13.31338 | 6 |
GTGTATG | 44300 | 0.0 | 13.227642 | 1 |
CATGACA | 34825 | 0.0 | 13.050017 | 9 |
GTATAGA | 12135 | 0.0 | 12.954586 | 1 |
CTAGTAC | 5980 | 0.0 | 12.816281 | 3 |
TATACAG | 8705 | 0.0 | 12.797867 | 5 |
GTACTAG | 7520 | 0.0 | 12.643006 | 1 |
TACCGTG | 4335 | 0.0 | 12.576639 | 7 |
CACATGA | 44440 | 0.0 | 12.553719 | 7 |
TAGACCG | 4730 | 0.0 | 12.521819 | 5 |
CTATACC | 8775 | 0.0 | 12.377212 | 4 |
TCATACA | 51745 | 0.0 | 12.370142 | 2 |
GTATATA | 28210 | 0.0 | 12.363231 | 1 |