Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945887.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23149356 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 7855 | 0.0 | 16.516382 | 5 |
TACCGTG | 6560 | 0.0 | 14.9744 | 7 |
ATACCGT | 7190 | 0.0 | 14.643246 | 6 |
TATACTG | 11625 | 0.0 | 14.233171 | 5 |
TCTATAC | 14745 | 0.0 | 14.061971 | 3 |
CCGTGAG | 5570 | 0.0 | 13.584859 | 9 |
GTCGCGC | 940 | 0.0 | 13.499699 | 8 |
GTATAGA | 16180 | 0.0 | 13.324767 | 1 |
CTATACT | 12350 | 0.0 | 13.095619 | 4 |
CATACAC | 55860 | 0.0 | 13.0714245 | 3 |
CTAGTAC | 7210 | 0.0 | 12.716036 | 3 |
GTATATA | 34630 | 0.0 | 12.709598 | 1 |
ACTGTGC | 3425 | 0.0 | 12.6245365 | 8 |
GTGTATG | 53555 | 0.0 | 12.621969 | 1 |
ACCGTGA | 7400 | 0.0 | 12.448372 | 8 |
TATACAG | 10840 | 0.0 | 12.315188 | 5 |
CTATACC | 11825 | 0.0 | 12.285474 | 4 |
ACATGAC | 39885 | 0.0 | 12.148908 | 8 |
ACACATG | 56040 | 0.0 | 12.035718 | 6 |
GTACTAG | 9030 | 0.0 | 11.937695 | 1 |