Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946142.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37414628 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1635 | 0.0 | 12.359579 | 8 |
TATACCG | 12315 | 0.0 | 12.100741 | 5 |
TATACTG | 18615 | 0.0 | 12.045989 | 5 |
CTATACT | 19265 | 0.0 | 11.569431 | 4 |
CTAGGCT | 9125 | 0.0 | 11.388384 | 4 |
GTATAGA | 25160 | 0.0 | 11.178343 | 1 |
TCTATAC | 23380 | 0.0 | 11.162235 | 3 |
CATACAC | 85865 | 0.0 | 11.1333 | 3 |
GTATATA | 49720 | 0.0 | 11.076757 | 1 |
TATACAG | 16345 | 0.0 | 10.871613 | 5 |
GTATAGG | 13545 | 0.0 | 10.694453 | 1 |
GTACTAG | 12745 | 0.0 | 10.590804 | 1 |
TAGACAG | 12775 | 0.0 | 10.561074 | 5 |
ACCGTGC | 4520 | 0.0 | 10.501128 | 8 |
ACACATG | 84715 | 0.0 | 10.479985 | 6 |
CCGTGCG | 2425 | 0.0 | 10.464843 | 9 |
TAGGCTG | 11640 | 0.0 | 10.460053 | 5 |
ACATGAC | 59900 | 0.0 | 10.356194 | 8 |
TACCGTG | 9575 | 0.0 | 10.258373 | 7 |
GTGTATG | 84100 | 0.0 | 10.172404 | 1 |