FastQCFastQC Report
Wed 16 Nov 2016
SRR1945958.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945958.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90036958
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG470000.06.18072464
GGTCGCC113700.05.35354444-45
TATGCCG138100.05.182066448-49
AGAGCGT266000.05.16273169
GCCGTCT147450.05.13625652-53
TGCCGTC136950.05.111613350-51
GATCGGA625450.05.07241252
ATGCCGT145100.05.067347550-51