FastQCFastQC Report
Tue 15 Nov 2016
SRR1946039.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946039.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61050052
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG181750.014.335665
CTATACT316100.014.0218624
TATACTG304050.013.6028555
CCGTGCG34300.013.5506519
TCTATAC381050.013.122783
CATACAC1670200.012.886483
CTAGTAC190450.012.6472063
GTATAGG210050.012.4823831
TATACAG273900.012.3235565
ACACATG1608650.012.3099696
ACATGAC1430550.012.287178
CATGACA1456150.011.9647589
GTATAGA401600.011.8873751
CACATGA1567850.011.8699227
GTACTAG223750.011.5080971
TAGACCG144900.011.4692245
TAGTACT356050.011.4463484
TCATACA1850900.011.3848242
TACCGTG136450.011.319867
GTGTATG1607800.011.1990051