FastQCFastQC Report
Tue 15 Nov 2016
SRR1946184.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946184.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47364216
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC220800.014.8662794
TATACTG223600.012.5298955
TATACCG158000.012.2578155
CTATACT242550.011.4732634
CATACAC1522850.010.9121723
TCTATAC290400.010.8942513
ATACCGT144850.010.73774056
GTATAGA307400.010.6187881
ACATGAC1226700.010.5832448
ACACATG1517950.010.4972066
TAGGCTG141400.010.4721075
CACATGA1458700.010.1215457
GTATATA654550.010.1176391
CATGACA1275050.010.0787869
GTGTATG1431250.010.029711
CTAGGCT124450.09.8585294
TATACAG212100.09.8182945
ATCATAC1604800.09.8125941
TCATACA1676750.09.7988322
GTACTAG169050.09.7102321