FastQCFastQC Report
Wed 16 Nov 2016
SRR1945816.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945816.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16968526
Sequences flagged as poor quality0
Sequence length101
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG121700.06.595756594-95
GATCGGA173150.05.45882494-95
ATCGGAA159700.05.20477194-95