FastQCFastQC Report
Tue 15 Nov 2016
SRR1946040.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946040.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37527780
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG104450.014.6692545
TATACTG154550.013.4112265
TAGACCG91550.013.03995
CCGTGAG94800.012.8882099
GACCGTG68700.012.5817137
ATACCGT95650.012.083726
TACCGTG74350.011.9415187
TCTATAC207950.011.804723
CTAGTAC111500.011.6828573
AGACCGT88650.011.5008916
ACCGTGA124500.011.2441388
TAGTACT212500.011.2202184
CTATACT172100.010.6570244
CTATACC151750.010.6296184
GTGTATG802750.010.6114511
GTACTAG134600.010.4195211
ATACTGT164400.010.3170596
GTATAGA218000.010.2976571
TAGGCTG87650.010.2418955
CATACAC828850.010.2013553