FastQCFastQC Report
Tue 15 Nov 2016
SRR1945989.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945989.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49911668
Sequences flagged as poor quality0
Sequence length101
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC255150.08.58273494-95
GCCGTCT243450.08.53617594-95
ATGCCGT288200.07.87074894-95
CGTATGC409650.07.73711194-95
TATGCCG324000.07.529462394-95
GGTCGCC317650.07.52278894-95
GTATGCC368100.07.402534594-95
TCGTATG494550.07.048316594-95
GTCGCCG317400.06.95188794-95
TGGTCGC301050.06.768677794-95
CGCCGTA215800.06.57785894-95
CTCGTAT517350.06.264306594-95
TCGCCGT268550.05.97640894-95
CCGTCTT327400.05.88258194-95
GTGGTCG365300.05.79804692-93
CCGTATC228200.05.7828194-95
GCCGTAT241950.05.748994494-95
TCTCGTA603550.05.52583792-93
CTCGGTG517900.05.500124594-95
CTGACCA1222300.05.236714494-95