Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946152.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 42506664 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 19950 | 0.0 | 13.42828 | 5 |
CTAGTAC | 14570 | 0.0 | 12.741659 | 3 |
CTATACT | 21365 | 0.0 | 12.164959 | 4 |
TAGTACT | 27590 | 0.0 | 11.345168 | 4 |
TCTATAC | 25220 | 0.0 | 11.274538 | 3 |
CATACAC | 113355 | 0.0 | 11.132483 | 3 |
GTACTAC | 17080 | 0.0 | 11.089324 | 6 |
TATACCG | 13230 | 0.0 | 10.977087 | 5 |
ACATGAC | 92260 | 0.0 | 10.769025 | 8 |
ACACATG | 111885 | 0.0 | 10.547821 | 6 |
CATGACA | 93980 | 0.0 | 10.531925 | 9 |
CCTAGTA | 17240 | 0.0 | 10.304929 | 2 |
CACATGA | 108680 | 0.0 | 10.296666 | 7 |
GTATAGA | 26610 | 0.0 | 10.284476 | 1 |
GTATAGG | 14675 | 0.0 | 10.221547 | 1 |
TCATACA | 125075 | 0.0 | 9.961614 | 2 |
TAGACCG | 10020 | 0.0 | 9.943895 | 5 |
TATACAG | 17900 | 0.0 | 9.898667 | 5 |
GTACTAG | 18575 | 0.0 | 9.847473 | 1 |
AGTACTA | 27400 | 0.0 | 9.845772 | 5 |