FastQCFastQC Report
Tue 15 Nov 2016
SRR1945953.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945953.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31093544
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC13700.012.348118
TATACCG97350.011.1060935
CTATACT148950.011.01423554
TATACTG147800.010.9091055
TCTATAC181500.010.4633983
TCGCGCG18500.010.4143659
GTATATA438000.010.3620981
CATACAC1001600.010.2782183
CCGTGCG17500.010.20399
TACCGTG70500.09.99815757
ACATGAC741750.09.9906258
ACACATG979500.09.8930946
TAGGCTG88550.09.6616725
CACATGA945650.09.6203937
CATGACA754850.09.6118569
GTATAGA195350.09.6062521
TAGACCG66050.09.4656025
ATCATAC1065750.09.3027151
TCATACA1091900.09.2857512
TAGTACT166100.09.2826864