Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946047.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 57972894 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 29485 | 0.0 | 14.091074 | 5 |
TATACCG | 18835 | 0.0 | 13.210285 | 5 |
CTATACT | 30735 | 0.0 | 12.511441 | 4 |
TCTATAC | 37570 | 0.0 | 12.322317 | 3 |
CATACAC | 130050 | 0.0 | 12.202899 | 3 |
TATACAG | 28125 | 0.0 | 12.085037 | 5 |
GTATAGA | 39120 | 0.0 | 12.011679 | 1 |
CTAGTAC | 18830 | 0.0 | 11.943781 | 3 |
ACATGAC | 102390 | 0.0 | 11.485876 | 8 |
GTATATA | 85990 | 0.0 | 11.437308 | 1 |
TACCGTG | 14005 | 0.0 | 11.431026 | 7 |
ACACATG | 126690 | 0.0 | 11.320823 | 6 |
GAGCGCG | 3310 | 0.0 | 11.20503 | 7 |
GTATAGG | 19915 | 0.0 | 11.184089 | 1 |
ATACCGT | 17050 | 0.0 | 11.1792 | 6 |
GTGTATG | 126985 | 0.0 | 11.1789465 | 1 |
CATGACA | 104900 | 0.0 | 11.175243 | 9 |
GTACTAG | 21210 | 0.0 | 10.98863 | 1 |
TAGTACT | 34360 | 0.0 | 10.890852 | 4 |
CACATGA | 122110 | 0.0 | 10.811302 | 7 |