FastQCFastQC Report
Wed 16 Nov 2016
SRR1945829.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945829.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62146468
Sequences flagged as poor quality0
Sequence length101
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC554900.07.423294594-95
GTATGCC470750.07.33813194-95
TATGCCG412250.07.32140394-95
GCCGTCT315550.07.28835494-95
TGCCGTC333450.07.225872594-95
ATGCCGT383250.06.73730494-95
TCGTATG692250.06.617580494-95
CGCCGTA170600.05.933779294-95
GGTCGCC150000.05.800137594-95
CTCGTAT682100.05.608109594-95
GATCTCG1062500.05.48383394-95
CATCACG1282600.05.382960394-95
TCACGAT1147250.05.28814194-95
CACGATC943300.05.276735394-95
CCGTCTT414200.05.214607794-95
ATCACGA1287500.05.18312194-95
TGGTCGC182000.05.052654392-93