Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946234.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12294422 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 645 | 0.0 | 18.216541 | 8 |
TATACCG | 4285 | 0.0 | 15.90387 | 5 |
CAGTGCC | 2185 | 0.0 | 15.27188 | 9 |
CTATACT | 6270 | 0.0 | 15.06656 | 4 |
CCGTGAG | 2570 | 0.0 | 14.812812 | 9 |
TATACTG | 6140 | 0.0 | 14.620109 | 5 |
CTGCGCG | 790 | 0.0 | 14.278078 | 9 |
CCGTGCG | 835 | 0.0 | 14.071459 | 9 |
TAATACT | 10465 | 0.0 | 14.056937 | 4 |
TACCCTG | 3440 | 0.0 | 13.799029 | 5 |
TTACACT | 6340 | 0.0 | 13.714124 | 4 |
GTATAGA | 8590 | 0.0 | 13.700709 | 1 |
CAGCACT | 3480 | 0.0 | 13.64042 | 4 |
ACAGTGC | 2355 | 0.0 | 13.570744 | 8 |
TAGACCT | 5730 | 0.0 | 13.533649 | 4 |
TCTATAC | 7605 | 0.0 | 13.348737 | 3 |
ACCGTGA | 3875 | 0.0 | 13.098986 | 8 |
ATACCGT | 3875 | 0.0 | 13.098986 | 6 |
TTACCCT | 6670 | 0.0 | 12.753763 | 4 |
TACACAG | 4255 | 0.0 | 12.702345 | 5 |