Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945792.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 65919692 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCCGTCT | 51120 | 0.0 | 24.688892 | 48-49 |
TGCCGTC | 52530 | 0.0 | 24.347212 | 48-49 |
ATGCCGT | 56315 | 0.0 | 23.101011 | 46-47 |
TATGCCG | 61275 | 0.0 | 22.25 | 46-47 |
CTGCTTG | 54055 | 0.0 | 22.100286 | 56-57 |
GTATGCC | 66295 | 0.0 | 21.027344 | 44-45 |
CCGTCTT | 63145 | 0.0 | 20.390245 | 50-51 |
CGTATGC | 71020 | 0.0 | 20.099543 | 44-45 |
CGTCTTC | 65635 | 0.0 | 19.359776 | 50-51 |
CTTCTGC | 68335 | 0.0 | 18.629702 | 54-55 |
TCGTATG | 81325 | 0.0 | 18.044146 | 42-43 |
CTCGTAT | 83095 | 0.0 | 16.728825 | 42-43 |
TCTGCTT | 80920 | 0.0 | 16.089737 | 56-57 |
TGCTTGA | 65500 | 0.0 | 15.929419 | 58-59 |
TTCTGCT | 80015 | 0.0 | 15.833097 | 54-55 |
GCTTGAA | 67015 | 0.0 | 14.686818 | 58-59 |
TCTCGTA | 93985 | 0.0 | 14.415092 | 40-41 |
AATCTCG | 112060 | 0.0 | 13.408165 | 38-39 |
ATCTCGT | 104785 | 0.0 | 13.316558 | 40-41 |
GTAATCT | 119405 | 0.0 | 12.360558 | 36-37 |