FastQCFastQC Report
Tue 15 Nov 2016
SRR1946232.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946232.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25738106
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC14350.018.3409678
TATACCG88450.016.5253055
CATACAC719150.015.00511553
TATACTG122850.014.9585165
CTATACT130500.014.72989754
ACACATG727950.014.339476
GTGTATG658550.014.2221411
ACATGAC618500.014.1718078
CACATGA703300.013.82637
CATGACA638600.013.6889489
TCTATAC151450.013.6543273
CTAGGCT72750.013.5666694
GTATAGA162850.013.496771
TCATACA788450.013.4895462
GATTGAG624150.013.1399157
CTAGTAC97250.012.9035313
GTATATA378350.012.8998811
ATCATAC793350.012.7251581
TATACAG113200.012.7046265
TTGAGTA674450.012.7034889