Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945983.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 45280140 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 7350 | 0.0 | 18.858438 | 53 |
CGCCGTA | 6080 | 0.0 | 18.195963 | 56 |
GCCGTAT | 6325 | 0.0 | 17.216192 | 57 |
CGAGATC | 22710 | 0.0 | 16.02962 | 18 |
CCGAGAT | 24285 | 0.0 | 15.031216 | 17 |
TGGTCGC | 9295 | 0.0 | 14.533652 | 52 |
GAGACCG | 19955 | 0.0 | 14.011119 | 50 |
CCGTATC | 7780 | 0.0 | 13.726927 | 58 |
CGAGACC | 20455 | 0.0 | 13.701195 | 49 |
TATGCCG | 6685 | 0.0 | 13.411762 | 63 |
AATGCCG | 25125 | 0.0 | 13.066593 | 13 |
TGCCGAG | 26050 | 0.0 | 12.662024 | 15 |
CTCGGTG | 15160 | 0.0 | 12.392166 | 47 |
ATCAGCC | 14140 | 0.0 | 12.377787 | 2 |
CCGGCAT | 5560 | 0.0 | 12.164986 | 1 |
TCGGTGG | 15730 | 0.0 | 12.099281 | 48 |
ATGCCGA | 27630 | 0.0 | 11.957974 | 14 |
CGTATGC | 8420 | 0.0 | 11.770469 | 61 |
AGACCGA | 22425 | 0.0 | 11.688617 | 51 |
GGCTGAT | 14750 | 0.0 | 11.533647 | 2 |