FastQCFastQC Report
Tue 15 Nov 2016
SRR1946253.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946253.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25560188
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC12550.018.7239848
TATACCG87700.016.722365
CTATACT129850.014.6994324
TATACTG125350.014.624565
CATACAC586750.013.8780723
TCTATAC155850.013.6956743
CTAGGCT67250.013.6319764
GTATAGA169350.013.5910771
TACCGTG79250.013.5214387
ATACCGT74450.013.3838086
TCGCGCG17650.013.3134479
GTGTATG562000.013.0066471
ACATGAC445600.012.9094658
ACACATG586750.012.8407086
GAGCGCG12250.012.6609177
TATACAG115450.012.5400515
TAGGCTG81350.012.5384765
GCCGTGC25350.012.4213518
CATGACA453250.012.3906849
CTAGTAC84050.012.3620043