Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946115.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30321494 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1535 | 0.0 | 15.308188 | 8 |
TATACCG | 10115 | 0.0 | 14.404211 | 5 |
TATACTG | 14335 | 0.0 | 13.245774 | 5 |
CATACAC | 106860 | 0.0 | 12.092684 | 3 |
ACATGAC | 88460 | 0.0 | 11.964199 | 8 |
ACACATG | 106825 | 0.0 | 11.755259 | 6 |
CTATACT | 15765 | 0.0 | 11.68827 | 4 |
CACATGA | 103455 | 0.0 | 11.615632 | 7 |
CATGACA | 90605 | 0.0 | 11.592721 | 9 |
TCTATAC | 18240 | 0.0 | 11.519824 | 3 |
ATACCGT | 8640 | 0.0 | 11.422842 | 6 |
GTATAGA | 20385 | 0.0 | 11.278134 | 1 |
TAGGCTG | 8660 | 0.0 | 11.125759 | 5 |
TCATACA | 117235 | 0.0 | 11.082932 | 2 |
TACCGTG | 7770 | 0.0 | 10.887173 | 7 |
ATCATAC | 118010 | 0.0 | 10.736903 | 1 |
GTATATA | 43760 | 0.0 | 10.722408 | 1 |
CCGTGAG | 7255 | 0.0 | 10.623471 | 9 |
CTAGTAC | 9505 | 0.0 | 10.484481 | 3 |
CCGTGCC | 2440 | 0.0 | 10.400733 | 9 |