FastQCFastQC Report
Tue 15 Nov 2016
SRR1946118.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946118.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33590670
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG119750.014.0118145
GTCGCGC18450.012.4816218
TATACTG159250.012.1005765
GTATAGA223850.012.0983141
CCGTGAG83350.011.8970989
CTAGTAC114150.011.2425463
TACCGTG97550.011.2253847
TCTATAC206750.011.2093223
CTATACT168950.011.157384
ACATGAC810900.011.1566738
ATACCGT106750.011.0504936
CATACAC1010250.010.958223
GTATATA479500.010.844911
TAGGCTG106050.010.8138635
ACACATG1041950.010.6268426
CATGACA835750.010.6054599
CACATGA1003250.010.437077
GTATAGG124750.010.3268881
ACCGTGA111050.010.2416078
TAGTACT203150.010.2277814