Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946143.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31300644 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 11255 | 0.0 | 13.240456 | 5 |
CCGTGAG | 9130 | 0.0 | 13.177052 | 9 |
ACCGTGA | 11375 | 0.0 | 12.559486 | 8 |
CTAGTAC | 12255 | 0.0 | 12.354468 | 3 |
GTATAGA | 21630 | 0.0 | 12.306201 | 1 |
TACCGTG | 8820 | 0.0 | 12.14876 | 7 |
TAGACCG | 7800 | 0.0 | 12.053817 | 5 |
TCTATAC | 19145 | 0.0 | 11.985218 | 3 |
ATACCGT | 10380 | 0.0 | 11.908223 | 6 |
ACATGAC | 89145 | 0.0 | 11.682142 | 8 |
TATACTG | 15020 | 0.0 | 11.674226 | 5 |
GTACTAG | 16520 | 0.0 | 11.529463 | 1 |
CTATACT | 15145 | 0.0 | 11.487194 | 4 |
CATGACA | 90510 | 0.0 | 11.344984 | 9 |
CATACAC | 114340 | 0.0 | 11.337572 | 3 |
ACACATG | 111785 | 0.0 | 11.171117 | 6 |
TGTAGGG | 16045 | 0.0 | 10.989534 | 2 |
CACATGA | 107850 | 0.0 | 10.9767475 | 7 |
CCTAGTA | 14475 | 0.0 | 10.914616 | 2 |
GACCGTG | 5770 | 0.0 | 10.914269 | 7 |