FastQCFastQC Report
Tue 15 Nov 2016
SRR1946251.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946251.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24413240
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC11050.016.1599468
TATACCG79500.015.9011865
CTATACT126000.014.1386014
GTATAGA163600.014.1260571
TCTATAC153950.013.98374753
TATACTG122350.013.8658865
ATACCGT71900.013.3983576
CATACAC551850.013.287443
GTGTATG533000.013.1489241
TACCGTG65200.012.8289997
ACATGAC451950.012.7473148
ACACATG541700.012.57002456
TAGTACT129000.012.4980494
CATGACA465950.012.4045959
GTATATA376550.012.237221
TATACTA222950.012.1622165
TATACAG116350.012.0767255
GTATAGG89050.012.0510171
CTATACC121900.011.8763994
CACATGA523600.011.8735497