Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946201.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24275868 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 7850 | 0.0 | 15.324964 | 5 |
TATACTG | 11925 | 0.0 | 15.09279 | 5 |
CTATACT | 12595 | 0.0 | 14.81608 | 4 |
CATACAC | 45560 | 0.0 | 13.484438 | 3 |
TCTATAC | 14895 | 0.0 | 13.380315 | 3 |
ACATGAC | 36395 | 0.0 | 12.665581 | 8 |
ACACATG | 46975 | 0.0 | 12.564075 | 6 |
GTATAGG | 8370 | 0.0 | 12.370494 | 1 |
GTATAGA | 15910 | 0.0 | 12.246725 | 1 |
CATGACA | 36940 | 0.0 | 12.160707 | 9 |
GTATATA | 33635 | 0.0 | 12.103599 | 1 |
GTGTATG | 43695 | 0.0 | 12.031264 | 1 |
CACATGA | 46180 | 0.0 | 11.93561 | 7 |
TATACAG | 10630 | 0.0 | 11.847607 | 5 |
TAATACT | 18960 | 0.0 | 11.602418 | 4 |
TAGACTG | 5435 | 0.0 | 11.586023 | 5 |
CTAGGCT | 6005 | 0.0 | 11.58483 | 4 |
TACCGTG | 5770 | 0.0 | 11.564132 | 7 |
TCATACA | 52905 | 0.0 | 11.392689 | 2 |
TAGTACT | 12625 | 0.0 | 11.318352 | 4 |