FastQCFastQC Report
Tue 15 Nov 2016
SRR1946121.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946121.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33566264
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC14600.013.8415088
GAGCGCG21550.013.30312257
TATACTG163300.012.4333835
TATACCG107200.011.8375215
CTATACT175600.011.8054934
TCTATAC205700.011.6320463
CATACAC976000.011.4196913
GTATATA483550.011.2203471
GCGCGCC25800.011.1115859
ACACATG1003750.011.0593746
TATACAG156550.011.0480725
ACATGAC801700.010.8566778
GTATAGA224500.010.6387171
CATGACA817800.010.6256559
TAGGCTG99150.010.6181065
CACATGA959050.010.5505197
CTAGGCT87900.010.5353134
TCATACA1065400.010.4792152
GTGTATG924550.010.3993171
TACCGTG78250.010.3303527