Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946192.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 46561058 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 3425 | 0.0 | 14.815795 | 8 |
TATGAGC | 20395 | 0.0 | 14.246906 | 94 |
TATACTG | 22105 | 0.0 | 12.227159 | 5 |
CTATACT | 23295 | 0.0 | 12.066507 | 4 |
CTAGGCT | 14730 | 0.0 | 11.966623 | 4 |
GCTGTCC | 14705 | 0.0 | 11.918059 | 8 |
TAGGCTG | 16620 | 0.0 | 11.624092 | 5 |
CATACAC | 133510 | 0.0 | 11.315733 | 3 |
GTATATA | 62770 | 0.0 | 11.238589 | 1 |
TCGCGCG | 4495 | 0.0 | 11.184493 | 9 |
AGGTCGC | 5485 | 0.0 | 11.050593 | 6 |
ACATGAC | 104535 | 0.0 | 11.016493 | 8 |
TATACAG | 21060 | 0.0 | 11.003651 | 5 |
ACACATG | 131210 | 0.0 | 10.95073 | 6 |
CTGTCCC | 18205 | 0.0 | 10.865599 | 9 |
GTATAGA | 27870 | 0.0 | 10.7323 | 1 |
TCTATAC | 27110 | 0.0 | 10.594056 | 3 |
CACATGA | 124865 | 0.0 | 10.510215 | 7 |
TCATACA | 144640 | 0.0 | 10.363822 | 2 |
TAGACTG | 11070 | 0.0 | 10.275808 | 5 |