FastQCFastQC Report
Tue 15 Nov 2016
SRR1946172.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946172.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32385730
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG114200.014.5154175
TATGAGC154500.014.06114294
TATACTG148200.012.6111835
TACCGTG86550.012.4789017
TCTATAC194100.011.9814753
CATACAC898000.011.8448813
CCGTGAG98300.011.6085079
TAGGCTG93350.011.5197255
ACATGAC811850.011.3601998
ATACCGT98550.011.3406856
ACACATG951850.011.2975926
CTAGTAC112950.011.272333
GTACTAG150950.011.22503951
CACATGA931300.010.9064267
CATGACA836800.010.8812759
ACCGTGA126550.010.8724088
GTATAGA203450.010.8269621
TAGTACT230450.010.7863574
GTCGCGC13950.010.7719938
GTATAGG107300.010.6592111