Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946238.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 17771258 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 6670 | 0.0 | 13.387958 | 5 |
GTCGCGC | 1110 | 0.0 | 13.125748 | 8 |
CTATACT | 8100 | 0.0 | 12.823123 | 4 |
CTAGGCT | 4935 | 0.0 | 12.761573 | 4 |
TATACTG | 8055 | 0.0 | 12.661371 | 5 |
TCTATAC | 10375 | 0.0 | 12.457507 | 3 |
GCTGTCC | 4950 | 0.0 | 12.34308 | 8 |
GTATAGA | 11185 | 0.0 | 12.246825 | 1 |
CTGTCCC | 6320 | 0.0 | 11.898392 | 9 |
TACCGTG | 5075 | 0.0 | 11.853846 | 7 |
TAGGCTG | 5520 | 0.0 | 11.749695 | 5 |
ACATGAC | 36025 | 0.0 | 11.728461 | 8 |
TACACTG | 5335 | 0.0 | 11.716659 | 5 |
TATACAG | 7390 | 0.0 | 11.701997 | 5 |
CATACAC | 46070 | 0.0 | 11.691036 | 3 |
ACACATG | 46185 | 0.0 | 11.468544 | 6 |
GTATTAG | 10095 | 0.0 | 11.377583 | 1 |
GTACTAG | 6875 | 0.0 | 11.160442 | 1 |
TAATACT | 13360 | 0.0 | 11.151657 | 4 |
CATGACA | 37500 | 0.0 | 11.116746 | 9 |