FastQCFastQC Report
Tue 15 Nov 2016
SRR1945977.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945977.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70477046
Sequences flagged as poor quality0
Sequence length76
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG2054400.29149916413920074Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGCAT182500.045.2302631
CGGCATT228600.038.4252432
CCGAGAT641400.031.56477517
GGCATTC311250.031.0157973
CGAGATC686500.029.44159918
TGAACCG323750.029.34212114
AACCGGG213100.028.9199816
GCATTCC328050.028.4980284
CTGAACC379400.026.4471513
GCTGAAC266150.025.78139912
GGTCGCC147550.024.66176853
CCTGCTG251000.024.5671489
GAACCGG272950.024.51168415
CCGGGAT173200.024.38804418
ACCGGGA235800.024.09100717
ATTCCTG321550.021.8332466
CGCCGTA114500.021.09706556
ATCAGCC246100.021.00252
GAGACCG797500.020.67770450
GGCTGAT247950.020.4639532