FastQCFastQC Report
Tue 15 Nov 2016
SRR1945911.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945911.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19623578
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG168500.07.483709394-95
GAGCGTC45400.07.427707794-95
GATCGGA233250.06.841792694-95
ATCGGAA216000.06.82747594-95
AGCGTCG48500.06.61019694-95
CGGAAGA192850.05.87382694-95
GCACACG37750.05.22135894-95
AGAGCGT73150.05.12938294-95
AGATCGG350200.05.1130294-95
TAGATCG110950.05.072748794-95
AAGAGCG100650.05.049196794-95