Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946215.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24467522 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 9295 | 0.0 | 19.16355 | 5 |
ATACCGT | 8095 | 0.0 | 17.011276 | 6 |
CCGTGAG | 6965 | 0.0 | 16.80213 | 9 |
TACCGTG | 7480 | 0.0 | 16.085127 | 7 |
ACCGTGA | 9155 | 0.0 | 15.246994 | 8 |
TCTATAC | 16020 | 0.0 | 14.932804 | 3 |
CTAGTAC | 8855 | 0.0 | 14.595879 | 3 |
GTATAGA | 17155 | 0.0 | 14.320854 | 1 |
ACATGAC | 61065 | 0.0 | 14.215451 | 8 |
TATACTG | 11045 | 0.0 | 14.169829 | 5 |
CATACAC | 75770 | 0.0 | 14.049376 | 3 |
CTATACT | 12265 | 0.0 | 13.718341 | 4 |
ACACATG | 76570 | 0.0 | 13.687758 | 6 |
CATGACA | 63385 | 0.0 | 13.672897 | 9 |
GTGTATG | 70235 | 0.0 | 13.448782 | 1 |
CACATGA | 74490 | 0.0 | 13.338074 | 7 |
TAGTACT | 17650 | 0.0 | 13.287459 | 4 |
CTATACC | 13215 | 0.0 | 12.732157 | 4 |
TCATACA | 83340 | 0.0 | 12.722556 | 2 |
GTCGCGC | 1490 | 0.0 | 12.617109 | 8 |