FastQCFastQC Report
Tue 15 Nov 2016
SRR1945910.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945910.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18873196
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG151750.06.90131794-95
ATCGGAA192750.06.32040894-95
GATCGGA208000.06.30228394-95
GAGCGTC47450.05.705461594-95
GCACACG39300.05.498838494-95
CGGAAGA176550.05.46110494-95