FastQCFastQC Report
Tue 15 Nov 2016
SRR1946064.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946064.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43500326
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG174950.018.429413
GATCGGA201000.016.3003311
ATCGGAA230100.014.46171952
AGAGCAC188300.014.1006618
GAGCACA189650.013.9756379
CGGAAGA236900.013.8877144
GCACACG109400.012.02775510-11
ACGTCTG117450.011.08319914-15
GAAGAGC306450.010.5505646
TATGCCG70450.010.41028146-47
CGTCTGA129550.010.28385216-17
TCCAGTC130350.09.86023824-25
CCAGTCA134750.09.66076726-27
CACGTCT139550.09.530045514-15
ACACGTC143350.09.31028112-13
GTATGCC83600.09.27890744-45
TGCCGTC65200.09.19258148-49
ACTCCAG152850.09.03932622-23
CACACGT151700.09.01466412-13
CTCCAGT147100.09.0090224-25