FastQCFastQC Report
Tue 15 Nov 2016
SRR1946195.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946195.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23460062
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG83250.019.5333845
CCGTGAG63050.017.815489
ATACCGT77150.017.605436
TACCGTG60600.017.21737
TCTATAC149750.015.66099553
GTCGCGC10300.015.5140958
ACCGTGA86050.015.1291188
TATACTG112200.014.6190185
CATACAC671850.014.515483
ACATGAC525500.014.4617888
CTATACT118850.014.3942114
CTATACC123000.014.3670754
GTATAGA165800.014.2533281
CATGACA536650.013.95988759
ACACATG673000.013.9040376
CACATGA644200.013.4239987
CTAGTAC88100.013.3367413
TCATACA746550.012.8553082
GTGTATG610800.012.7015071
GTACTAG99900.012.44043351