Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946207.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23103230 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 7370 | 0.0 | 13.072941 | 5 |
GTATAGA | 13855 | 0.0 | 12.467232 | 1 |
CATACAC | 63470 | 0.0 | 12.121799 | 3 |
TATACTG | 10755 | 0.0 | 12.017363 | 5 |
TCTATAC | 14035 | 0.0 | 11.921323 | 3 |
GGACCGT | 2455 | 0.0 | 11.869303 | 6 |
ACATGAC | 51755 | 0.0 | 11.723545 | 8 |
GTACTAG | 7940 | 0.0 | 11.6776705 | 1 |
ACACATG | 64210 | 0.0 | 11.572154 | 6 |
TACCGTG | 5645 | 0.0 | 11.489473 | 7 |
GTATATA | 33500 | 0.0 | 11.352122 | 1 |
TACACTG | 6500 | 0.0 | 11.279716 | 5 |
CACATGA | 62695 | 0.0 | 11.252079 | 7 |
CATGACA | 53470 | 0.0 | 11.233257 | 9 |
GTGTATG | 60085 | 0.0 | 11.2329445 | 1 |
CTATACT | 11755 | 0.0 | 11.194953 | 4 |
TAATACT | 18285 | 0.0 | 11.078199 | 4 |
TAGACAG | 7170 | 0.0 | 10.881175 | 5 |
TCATACA | 70355 | 0.0 | 10.7485485 | 2 |
ATCATAC | 67700 | 0.0 | 10.727235 | 1 |