FastQCFastQC Report
Tue 15 Nov 2016
SRR1946132.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946132.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35643532
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG124550.013.9645675
GTCGCGC18650.012.8525928
TATACTG163600.012.3266065
CTAGTAC124350.012.1357813
CTATACT171900.011.81452754
CATACAC910900.011.2872093
ATACCGT105950.011.1354746
TCTATAC209000.011.0894273
TAGGCTG106850.011.0865275
ACATGAC805100.010.905028
TATACAG155900.010.7945975
GTACTAC135800.010.7645676
TGTAGGG167300.010.76252
ACACATG901100.010.6673446
GCTGTCC91500.010.6328258
CATGACA831700.010.5217229
CCGTGAG93050.010.45509059
CTAGGCT93550.010.4526894
CACATGA880300.010.358487
CCTAGTA145550.010.3358962