Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946133.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 46002104 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 15990 | 0.0 | 12.435112 | 5 |
TATACTG | 21890 | 0.0 | 12.218679 | 5 |
TAGGCTG | 14745 | 0.0 | 11.859216 | 5 |
ACATGAC | 117425 | 0.0 | 11.671399 | 8 |
CATACAC | 136235 | 0.0 | 11.642528 | 3 |
GTATATA | 63850 | 0.0 | 11.622015 | 1 |
CTAGGCT | 13255 | 0.0 | 11.278159 | 4 |
CATGACA | 122460 | 0.0 | 11.125757 | 9 |
ACACATG | 140265 | 0.0 | 11.07167 | 6 |
CACATGA | 135000 | 0.0 | 10.994984 | 7 |
TATACAG | 20765 | 0.0 | 10.798022 | 5 |
TCTATAC | 27255 | 0.0 | 10.762899 | 3 |
TCATACA | 149230 | 0.0 | 10.55626 | 2 |
CTATACT | 23130 | 0.0 | 10.548303 | 4 |
ATCATAC | 147430 | 0.0 | 10.289964 | 1 |
GTGTATG | 128420 | 0.0 | 10.198303 | 1 |
GTATAGA | 29255 | 0.0 | 10.175107 | 1 |
CTGTCCC | 17545 | 0.0 | 9.857575 | 9 |
GTATAGG | 17405 | 0.0 | 9.75368 | 1 |
GCTGTCC | 14455 | 0.0 | 9.721852 | 8 |