Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946220.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24938832 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 8685 | 0.0 | 19.046217 | 5 |
TACCGTG | 7015 | 0.0 | 16.813375 | 7 |
CCGTGAG | 6060 | 0.0 | 16.128515 | 9 |
ACCGTGA | 7895 | 0.0 | 15.653352 | 8 |
TCTATAC | 15525 | 0.0 | 15.623037 | 3 |
ATACCGT | 8350 | 0.0 | 15.307443 | 6 |
TATACTG | 11905 | 0.0 | 15.197328 | 5 |
CTATACT | 12845 | 0.0 | 14.85728 | 4 |
CATACAC | 74585 | 0.0 | 14.274604 | 3 |
ACATGAC | 63760 | 0.0 | 14.231073 | 8 |
CTATACC | 12505 | 0.0 | 14.095969 | 4 |
GTATAGA | 16985 | 0.0 | 13.831473 | 1 |
CATGACA | 64750 | 0.0 | 13.723203 | 9 |
ACACATG | 77145 | 0.0 | 13.681138 | 6 |
CACATGA | 73090 | 0.0 | 13.16682 | 7 |
GTGTATG | 70750 | 0.0 | 13.035912 | 1 |
TCATACA | 83645 | 0.0 | 12.638537 | 2 |
ATCATAC | 81955 | 0.0 | 12.500197 | 1 |
TATACAG | 10245 | 0.0 | 12.384764 | 5 |
TAATACT | 19405 | 0.0 | 12.353894 | 4 |