FastQCFastQC Report
Tue 15 Nov 2016
SRR1946108.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946108.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37042948
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC18200.016.5168538
TATACTG174450.012.3044015
GCGGGCG36750.012.30094694
TATACCG121050.012.0285195
TATGAGC158600.011.90599794
CTATACT183950.011.7269934
TCGCGCG26200.011.1149919
TCTATAC206900.010.9929733
TAGACCG97650.010.9186485
GTATAGA229350.010.8383221
TAGACAG122750.010.7522675
GTACTAG143050.010.6960231
CATACAC896700.010.6541923
GACAGCG42300.010.5487597
GTATAGG130700.010.4820021
AGGTCGC35800.010.3648316
GTATATA507300.010.3289731
CTAGTAC121600.010.202363
ACAGTGC71500.010.1822658
TAGGCTG116650.010.1468445