FastQCFastQC Report
Tue 15 Nov 2016
SRR1946268.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946268.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40432946
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC15050.012.4956668
TATACCG139100.011.2252385
GTATAGA281200.011.0107171
TACCGTG103150.010.8487647
TATACTG196400.010.6562195
CTATACT203450.010.4716434
GAGCGCG16700.010.4173617
CATACAC1066250.010.3998943
ACATGAC888900.010.3190628
ACACATG1058800.010.20914656
ATACCGT121500.010.1775666
TCTATAC258100.010.1305023
CATGACA913200.010.0136729
CACATGA1023650.09.9168487
TATACAG178650.09.8721745
GTATAGG142800.09.68777751
GTATATA583150.09.6425671
GTGTATG1045000.09.4740241
CCGTGAG80950.09.2927199
GTGCTAG61900.09.2741521