Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946233.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26946798 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTGAG | 6735 | 0.0 | 12.632536 | 9 |
TATACCG | 9250 | 0.0 | 12.606004 | 5 |
GTCGCGC | 895 | 0.0 | 12.079448 | 8 |
TACCGTG | 6465 | 0.0 | 11.706262 | 7 |
ACCGTGA | 8715 | 0.0 | 11.218589 | 8 |
ATACCGT | 7720 | 0.0 | 11.203427 | 6 |
TCTATAC | 16970 | 0.0 | 10.584687 | 3 |
GTATAGA | 18615 | 0.0 | 10.365144 | 1 |
TATACTG | 12900 | 0.0 | 10.132639 | 5 |
CTAGTAC | 8880 | 0.0 | 10.060908 | 3 |
CTATACT | 13130 | 0.0 | 10.02764 | 4 |
CATACAC | 82455 | 0.0 | 9.985404 | 3 |
ACATGAC | 65715 | 0.0 | 9.920973 | 8 |
ACACATG | 82240 | 0.0 | 9.659485 | 6 |
GTATATA | 40410 | 0.0 | 9.607704 | 1 |
GTATTAG | 15495 | 0.0 | 9.5973215 | 1 |
CATGACA | 67735 | 0.0 | 9.541994 | 9 |
CTATACC | 13065 | 0.0 | 9.50167 | 4 |
CACATGA | 79665 | 0.0 | 9.488103 | 7 |
GTACTAG | 11125 | 0.0 | 9.433207 | 1 |