FastQCFastQC Report
Tue 15 Nov 2016
SRR1945956.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945956.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19203732
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTGCG12050.016.3811159
TATACTG97600.016.326895
CTATACT103950.016.1470184
TATACCG61100.015.155795
TCTATAC121150.014.6701323
CATACAC572750.014.1198143
GTCGCGC7000.014.09960658
GTATAGG68750.014.0348421
GCCGTGC20100.014.0294598
ACATGAC426750.013.6122748
GTGTATG543250.013.4294541
ACACATG549700.013.3814676
CATGACA432000.013.3487949
TATACAG90350.013.2147565
GATTGAG501950.012.9965917
CACATGA527800.012.778597
TAGTACT118300.012.6383694
TCATACA628850.012.5268212
CTAGTAC61750.012.4112713
ATTGAGT555650.012.4083648