FastQCFastQC Report
Tue 15 Nov 2016
SRR1945957.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945957.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23610888
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG77300.016.6011475
GAGCGCG12650.015.9763197
CTATACT128350.015.4215364
TATACTG125150.015.3619885
TCTATAC154000.014.7767833
CTAGTAC80700.014.1575463
CATACAC536450.013.87416653
TACCGTG58850.013.4970567
GTATAGA173450.013.0805261
GTATAGG87500.013.072261
ACACATG544400.013.062996
ACATGAC452650.013.0618868
ATACCGT70900.013.0599586
GTGTATG523500.012.8309771
TATACAG109300.012.772955
GTATATA360450.012.7455111
GTATTAG151550.012.6723361
TAGTACT140950.012.6086384
GGACCGT26100.012.606066
CATGACA459550.012.5995939