FastQCFastQC Report
Tue 15 Nov 2016
SRR1946162.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946162.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31925090
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC138500.014.5851394
GTCGCGC17850.013.9463738
TATACCG111450.013.6548585
CTAGGCT92650.013.4421974
TACCGTG91350.013.265847
TAGGCTG103400.012.7646255
TATACTG142150.012.32492355
TCTATAC188900.012.2640613
GCTGTCC89800.011.9779578
CCGTGAG72450.011.9289739
ATACCGT95700.011.8284746
CTATACT151400.011.8268454
ACCGTGA100150.011.6311958
CTGTCCC111400.011.595019
GTATAGA202700.011.5432521
CATACAC831600.011.4596883
GTATATA424850.011.2031751
TAGGCGG90200.011.0979524
TAGTACT175150.011.0281194
GTACTAG118850.010.9329011