Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945913.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 95261380 |
Sequences flagged as poor quality | 0 |
Sequence length | 40-101 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 90085 | 0.0 | 25.095898 | 4 |
AGAGCGT | 48460 | 0.0 | 23.179234 | 9 |
GATCGGA | 104430 | 0.0 | 21.881596 | 2 |
CGGAAGA | 104275 | 0.0 | 21.863516 | 5 |
ATCGGAA | 109515 | 0.0 | 20.878149 | 3 |
AAGAGCG | 56260 | 0.0 | 20.19878 | 8 |
GGTCGCC | 28725 | 0.0 | 18.423285 | 44-45 |
GAAGAGC | 125550 | 0.0 | 18.33292 | 7 |
AGAGCAC | 63085 | 0.0 | 18.256456 | 9 |
CGCCGTA | 30025 | 0.0 | 17.231201 | 46-47 |
TATGCCG | 28220 | 0.0 | 16.661379 | 46-47 |
TGCCGTC | 27850 | 0.0 | 16.319218 | 48-49 |
TGGTCGC | 32670 | 0.0 | 16.013151 | 42-43 |
ATGCCGT | 29825 | 0.0 | 15.687687 | 48-49 |
GCCGTCT | 29870 | 0.0 | 15.532903 | 50-51 |
GCACACG | 37765 | 0.0 | 15.414391 | 12-13 |
CGTATGC | 32470 | 0.0 | 15.02745 | 44-45 |
GAGCGTC | 37935 | 0.0 | 14.989422 | 10-11 |
GCCGTAT | 35505 | 0.0 | 14.938608 | 48-49 |
AGATCGG | 156815 | 0.0 | 14.877904 | 1 |