FastQCFastQC Report
Tue 15 Nov 2016
SRR1946228.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946228.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19189376
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC240020.12507962739382458No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG81050.020.0616665
CCGTGAG62950.018.8861669
TACCGTG65750.018.3678637
ATACCGT76750.017.9395546
ACCGTGA77900.017.5539388
TCTATAC135450.016.2404863
CTATACT96950.015.4174144
GTATAGA149900.015.23107051
TATACTG95500.014.8609825
CATACAC647700.014.6446673
GTGTATG610750.014.2747281
CTATACC110500.014.20745854
TATACAG90200.014.1190895
ACACATG676100.014.0885156
CTAGTAC78000.014.04085353
ACATGAC526450.014.0139838
CATGACA539950.013.7941449
CACATGA633750.013.4802277
GATTGAG582550.013.4469477
GTATAGG66450.013.3184361