FastQCFastQC Report
Tue 15 Nov 2016
SRR1946269.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946269.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29011134
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG99700.015.8441815
TATACTG142750.014.5569985
CTATACT141550.013.9830664
CATACAC642300.013.4610593
TCTATAC177100.013.3797313
ACATGAC532950.013.176118
ACACATG639600.013.0528336
TACCGTG77300.012.9523757
CATGACA547250.012.8052929
CACATGA621750.012.5877387
GTGTATG615300.011.9444031
GTATAGA190300.011.9173181
ACAGTGC54300.011.8588858
ATACCGT89750.011.6799426
TCATACA734850.011.613352
GTATATA400700.011.5191371
CTATACC144500.011.5176954
ATCATAC716300.011.4557051
ACTGTGC44400.011.4330978
TATACAG127050.011.3232855