FastQCFastQC Report
Tue 15 Nov 2016
SRR1946026.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946026.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36999598
Sequences flagged as poor quality0
Sequence length99
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG181450.013.7872475
TATACCG116700.013.6272275
GTCGCGC15050.013.5946648
CTATACT191250.013.5670384
CATACAC1195800.013.2795833
ACACATG1182250.013.1210626
GTATAGA236750.012.8117621
ACATGAC903450.012.7901178
CCGTGCG23300.012.5729079
GTATAGG138700.012.4436761
GTGTATG1086000.012.4399341
GTATATA498800.012.3671141
CACATGA1139350.012.21931657
CATGACA933200.012.2029599
TCATACA1298550.012.1510322
TATACAG167500.012.1316235
ATCATAC1237250.011.9720041
CTAGTAC115000.011.9686763
TCTATAC228000.011.8697183
GATTGAG976950.011.8469037