FastQCFastQC Report
Tue 15 Nov 2016
SRR1946137.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946137.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29492456
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG142600.013.9445015
TATACCG114500.013.6716485
TCTATAC199750.013.0874893
CTATACT155950.012.7533234
ATACCGT100650.012.4208936
TACCGTG91950.012.0624327
CCGTGAG80700.011.7051379
ACATGAC748800.011.1525878
ACCGTGA105000.011.1445888
CATACAC933200.011.1399263
GCCGTGC31050.011.0488048
TAGGCTG86300.011.0032945
TATACAG137450.010.9784855
GTATAGA203850.010.95811751
ACACATG918750.010.8908876
CATGACA763150.010.8012429
GTATAGG113500.010.6485461
CACATGA896050.010.474197
CTAGTAC100200.010.4641873
GTATATA430000.010.4226331