Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945773.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 200000000 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 35 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 70120 | 0.0 | 9.659676 | 3 |
GCACACG | 33795 | 0.0 | 8.988355 | 10-11 |
TGCCGTC | 26805 | 0.0 | 8.89337 | 48-49 |
GAGCACA | 68795 | 0.0 | 8.754698 | 9 |
AGAGCAC | 72845 | 0.0 | 8.388378 | 8 |
GCCGTCT | 28955 | 0.0 | 8.224809 | 48-49 |
ATGCCGT | 33120 | 0.0 | 7.436903 | 46-47 |
TATGCCG | 34605 | 0.0 | 7.159147 | 46-47 |
GTATGCC | 37605 | 0.0 | 6.993484 | 44-45 |
GATCGGA | 93940 | 0.0 | 6.8166375 | 1 |
CGGAAGA | 109000 | 0.0 | 6.724896 | 4 |
ACGTCTG | 46180 | 0.0 | 6.5809317 | 14-15 |
CGTATGC | 39460 | 0.0 | 6.5558615 | 44-45 |
CACACGT | 47085 | 0.0 | 6.3974805 | 12-13 |
CGTCTGA | 48770 | 0.0 | 6.236123 | 16-17 |
ATCGGAA | 121540 | 0.0 | 6.228205 | 2 |
GAAGAGC | 122130 | 0.0 | 5.7531695 | 6 |
CAGTCAC | 56115 | 0.0 | 5.748366 | 26-27 |
ACACGTC | 54995 | 0.0 | 5.74607 | 12-13 |
GTCACAC | 57515 | 0.0 | 5.7201533 | 28-29 |