Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946031.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31658620 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGAGCGG | 12755 | 0.0 | 18.444912 | 94 |
TATACCG | 10785 | 0.0 | 17.408226 | 5 |
CTGAGCG | 13645 | 0.0 | 16.108408 | 94 |
TACCGTG | 8920 | 0.0 | 15.74065 | 7 |
TATACTG | 15430 | 0.0 | 15.475139 | 5 |
ATACCGT | 9630 | 0.0 | 15.454982 | 6 |
CTATACT | 15515 | 0.0 | 14.998054 | 4 |
CTAGTAC | 11180 | 0.0 | 14.992697 | 3 |
AGACCGG | 7970 | 0.0 | 14.935809 | 94 |
GTATAGA | 22565 | 0.0 | 14.613457 | 1 |
TCTATAC | 20775 | 0.0 | 14.446262 | 3 |
ACCGTGA | 10655 | 0.0 | 13.790239 | 8 |
CATACAC | 98260 | 0.0 | 13.7851095 | 3 |
CCGTGAG | 8100 | 0.0 | 13.748912 | 9 |
TATACAG | 14335 | 0.0 | 13.587074 | 5 |
TAGGCTG | 9615 | 0.0 | 13.537106 | 5 |
CTAGGCT | 7995 | 0.0 | 13.352012 | 4 |
ACACATG | 95555 | 0.0 | 13.337114 | 6 |
ACATGAC | 80085 | 0.0 | 13.147009 | 8 |
TAGTACT | 20845 | 0.0 | 12.982437 | 4 |