FastQCFastQC Report
Tue 15 Nov 2016
SRR1946112.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946112.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43626002
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC208950.014.64987994
TATACCG153500.013.5353825
TACCGTG122400.013.0144637
CCGTGAG121100.012.7266549
TCTATAC292500.012.052833
ATACCGT148150.011.7988246
CTAGTAC148600.011.6724263
ACCGTGA156050.011.5925378
GTATAGA310700.011.3071351
TATACTG214650.011.1247285
CATACAC1386500.010.8522413
TAGTACT304150.010.8181964
CTATACC238850.010.5680224
GTATAGG159000.010.5299431
ACATGAC1150600.010.495198
ACACATG1392500.010.4169096
CTATACT228950.010.3885394
GTACTAG186550.010.311011
CACATGA1368300.010.1755597
GTATATA639950.010.1268961