Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945940.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22389454 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 8330 | 0.0 | 16.251373 | 5 |
CCGTGAG | 5635 | 0.0 | 15.26282 | 9 |
TATACTG | 11315 | 0.0 | 14.830517 | 5 |
TACCGTG | 5920 | 0.0 | 14.687471 | 7 |
ATACCGT | 7185 | 0.0 | 14.129977 | 6 |
TCTATAC | 14665 | 0.0 | 14.107436 | 3 |
ACCGTGA | 7365 | 0.0 | 13.783595 | 8 |
CTAGTAC | 7395 | 0.0 | 12.9708805 | 3 |
GTATAGA | 15745 | 0.0 | 12.857222 | 1 |
CTATACT | 11890 | 0.0 | 12.851814 | 4 |
GCCGTGC | 2385 | 0.0 | 12.808742 | 8 |
TAGTACT | 14430 | 0.0 | 12.772699 | 4 |
CATACAC | 54185 | 0.0 | 12.747358 | 3 |
GTGTATG | 51465 | 0.0 | 12.193812 | 1 |
GAGCGCG | 1240 | 0.0 | 12.129008 | 7 |
GTCGCGC | 975 | 0.0 | 12.050827 | 8 |
TATACAG | 10425 | 0.0 | 12.0386505 | 5 |
GTATAGG | 7885 | 0.0 | 12.000953 | 1 |
CCGTGCG | 1380 | 0.0 | 11.919734 | 9 |
GTATATA | 33660 | 0.0 | 11.860502 | 1 |