FastQCFastQC Report
Tue 15 Nov 2016
SRR1946238.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946238.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17771258
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG66700.013.3879585
GTCGCGC11100.013.1257488
CTATACT81000.012.8231234
CTAGGCT49350.012.7615734
TATACTG80550.012.6613715
TCTATAC103750.012.4575073
GCTGTCC49500.012.343088
GTATAGA111850.012.2468251
CTGTCCC63200.011.8983929
TACCGTG50750.011.8538467
TAGGCTG55200.011.7496955
ACATGAC360250.011.7284618
TACACTG53350.011.7166595
TATACAG73900.011.7019975
CATACAC460700.011.6910363
ACACATG461850.011.4685446
GTATTAG100950.011.3775831
GTACTAG68750.011.1604421
TAATACT133600.011.1516574
CATGACA375000.011.1167469