Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946082.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 66758004 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 16055 | 0.0 | 31.173565 | 53 |
CGCCGTA | 14475 | 0.0 | 31.049156 | 56 |
GCCGTAT | 15770 | 0.0 | 28.495382 | 57 |
TGGTCGC | 17235 | 0.0 | 28.168018 | 52 |
AGCGTCG | 21645 | 0.0 | 25.942507 | 20 |
GAGCGTC | 21695 | 0.0 | 25.898066 | 19 |
CGTGTAG | 21225 | 0.0 | 25.752962 | 25 |
TATGCCG | 14670 | 0.0 | 25.480444 | 53 |
GCGTCGT | 21960 | 0.0 | 25.459536 | 21 |
CCGTATC | 17945 | 0.0 | 24.789358 | 58 |
GTCGTGT | 23100 | 0.0 | 24.007513 | 23 |
CGTATGC | 16565 | 0.0 | 23.575253 | 51 |
GTATGCC | 17490 | 0.0 | 22.09013 | 52 |
GTCGCCG | 23215 | 0.0 | 21.91968 | 54 |
ATGCCGT | 14440 | 0.0 | 21.777246 | 54 |
CTCGGTG | 24625 | 0.0 | 21.766167 | 47 |
CGTCGTG | 26090 | 0.0 | 21.617096 | 22 |
CGAGACC | 27890 | 0.0 | 21.596853 | 39 |
CGTATCA | 20520 | 0.0 | 21.47473 | 59 |
AAGAGCG | 54800 | 0.0 | 21.43443 | 17 |