Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946123.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35161716 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12175 | 0.0 | 12.393608 | 5 |
GTCGCGC | 1705 | 0.0 | 11.57767 | 8 |
TATACTG | 17060 | 0.0 | 11.379751 | 5 |
TAGACCG | 8790 | 0.0 | 11.069887 | 5 |
GTATATA | 50750 | 0.0 | 10.879078 | 1 |
GTATAGA | 23775 | 0.0 | 10.819989 | 1 |
TAGGCTG | 10715 | 0.0 | 10.792068 | 5 |
TCTATAC | 21765 | 0.0 | 10.778047 | 3 |
CTATACT | 18645 | 0.0 | 10.665376 | 4 |
CATACAC | 99380 | 0.0 | 10.482598 | 3 |
CCGTGAG | 8295 | 0.0 | 10.424941 | 9 |
ACATGAC | 75155 | 0.0 | 10.37492 | 8 |
CTGTCCC | 11315 | 0.0 | 10.259225 | 9 |
ATACCGT | 10655 | 0.0 | 10.2344265 | 6 |
GTATTAG | 19730 | 0.0 | 10.13029 | 1 |
ACACATG | 100005 | 0.0 | 10.12872 | 6 |
TATACAG | 15710 | 0.0 | 9.933988 | 5 |
TACCGTG | 9335 | 0.0 | 9.9190855 | 7 |
CATGACA | 77920 | 0.0 | 9.897643 | 9 |
GTATTAT | 26250 | 0.0 | 9.817735 | 1 |