Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946006.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38939818 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 568414 | 1.4597243366674184 | No Hit |
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 87440 | 0.22455164017458942 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 11500 | 0.0 | 34.269855 | 63 |
CGTATGC | 12675 | 0.0 | 32.433556 | 61 |
TGCCGTC | 12095 | 0.0 | 31.23712 | 65 |
CGAGATC | 31280 | 0.0 | 30.95915 | 18 |
GTATGCC | 13180 | 0.0 | 30.63915 | 62 |
ATGCCGT | 12295 | 0.0 | 30.12333 | 64 |
CCGAGAT | 31825 | 0.0 | 30.000593 | 17 |
GCCGTCT | 12425 | 0.0 | 27.927038 | 66 |
GAGACCG | 25845 | 0.0 | 27.032278 | 50 |
CGGCATT | 9910 | 0.0 | 26.705063 | 1 |
CGAGACC | 26740 | 0.0 | 26.386242 | 49 |
TCGTATG | 17455 | 0.0 | 24.912096 | 60 |
GACCGAT | 24295 | 0.0 | 24.90183 | 52 |
AGACCGA | 26990 | 0.0 | 24.474306 | 51 |
GAGATCG | 43620 | 0.0 | 22.224426 | 19 |
CTCGTAT | 12265 | 0.0 | 20.73867 | 59 |
CCGATAT | 12485 | 0.0 | 20.09708 | 54 |
GAGCGGT | 37025 | 0.0 | 19.83563 | 29 |
CCGAGAC | 36060 | 0.0 | 19.808311 | 48 |
AGAGCGG | 40910 | 0.0 | 19.729443 | 28 |