FastQCFastQC Report
Tue 15 Nov 2016
SRR1945931.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945931.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18477342
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG92100.015.209495
TATACCG60950.015.1932455
CTATACT99500.014.9793914
TCTATAC119100.014.4887163
CATACAC472950.013.6300613
ACATGAC342500.013.5300788
ATACCGT55200.013.3682666
ACACATG464250.013.313386
GTGTATG443000.013.2276421
CATGACA348250.013.0500179
GTATAGA121350.012.9545861
CTAGTAC59800.012.8162813
TATACAG87050.012.7978675
GTACTAG75200.012.6430061
TACCGTG43350.012.5766397
CACATGA444400.012.5537197
TAGACCG47300.012.5218195
CTATACC87750.012.3772124
TCATACA517450.012.3701422
GTATATA282100.012.3632311