FastQCFastQC Report
Tue 15 Nov 2016
SRR1946254.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946254.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30694324
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC15300.013.2138148
TCTATAC185850.011.7410233
TATACCG108000.011.4094025
CCGTGAG65950.011.3355719
TATACTG142800.011.296695
TACCGTG80650.011.1352877
CTATACT151700.011.0676984
CATACAC898600.010.7180073
GTATAGA200000.010.6107361
ACACATG883300.010.5448286
ACATGAC697550.010.3260598
TCGCGCG21050.010.2746459
ATACCGT91950.010.0734396
CACATGA858300.09.9921327
CATGACA719000.09.9528379
CTAGGCT82450.09.7539414
TATACAG129500.09.6604455
TCATACA991350.09.6101372
TAGGCTG95300.09.5740165
GTGTATG857700.09.5458121