FastQCFastQC Report
Tue 15 Nov 2016
SRR1946036.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946036.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68931314
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT360550.013.8829674
TATACTG352700.013.790885
TATACCG191400.013.4423855
CTAGTAC239300.013.4215923
CATACAC1928350.012.9689833
TCTATAC435150.012.7978313
TATACAG320550.012.2739955
ACACATG1927650.012.2076276
ACATGAC1400150.012.1525578
GTACTAG277250.012.0000821
CCGTGCG36500.011.8344769
GTATAGG243400.011.7962271
CATGACA1421550.011.7846539
CACATGA1856500.011.6614797
TCATACA2159200.011.6019652
TAGTACT452300.011.5339524
GTATAGA460750.011.4942621
GTGTATG1877700.011.304371
GTATATA997600.011.2392291
ATCATAC2127750.011.1199131