Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945998.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 45878018 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 5275 | 0.0 | 12.942366 | 56 |
GGTCGCC | 6285 | 0.0 | 12.028895 | 53 |
AATGCCG | 10345 | 0.0 | 12.008279 | 34 |
GCCGTAT | 5925 | 0.0 | 11.405894 | 57 |
GAGACCG | 11735 | 0.0 | 10.6467 | 40 |
TATGCCG | 5355 | 0.0 | 10.5231 | 53 |
CGTGTAG | 10115 | 0.0 | 10.17705 | 25 |
CGTATGC | 6340 | 0.0 | 10.156459 | 51 |
CGAGACC | 13045 | 0.0 | 9.55066 | 39 |
TGCCGAG | 13210 | 0.0 | 9.405635 | 36 |
GCGTCGT | 11710 | 0.0 | 9.358363 | 21 |
AGCGTCG | 12015 | 0.0 | 9.178951 | 20 |
GTCGTGT | 11945 | 0.0 | 9.174672 | 23 |
CCGTATC | 7140 | 0.0 | 9.121895 | 58 |
TGGTCGC | 8330 | 0.0 | 8.991052 | 52 |
GAGCGTC | 12340 | 0.0 | 8.908286 | 19 |
GACCGAT | 12265 | 0.0 | 8.901688 | 42 |
GAGCGGT | 14330 | 0.0 | 8.843864 | 19 |
GTATGCC | 6525 | 0.0 | 8.581855 | 52 |
ATGCCGA | 14760 | 0.0 | 8.559732 | 35 |