FastQCFastQC Report
Tue 15 Nov 2016
SRR1946186.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946186.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39379136
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGAGC164300.014.64672394
TATACCG140200.013.8803185
CCGTGAG108150.013.2946979
CTAGGCT109000.013.1094434
TACCGTG115200.012.9304627
CTAGTAC132900.012.8744943
TCTATAC237400.012.7316293
TAGGCTG120950.012.70834355
ACCGTGA141100.012.5543758
TATACTG182250.012.4057975
ATACCGT117850.012.2405866
CTATACT192250.012.1758744
GCTGTCC106550.011.8625928
CTGTCCC132300.011.7913039
GTACTAG185150.011.5581121
TAGTACT260600.011.3091584
GTATAGA245050.011.1895621
CATACAC1197550.010.8727613
GTACTAC147350.010.84231956
GTCGCGC29400.010.7079978