Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946235.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25802034 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 8885 | 0.0 | 16.448708 | 5 |
TATACTG | 11640 | 0.0 | 15.139346 | 5 |
CTATACT | 12740 | 0.0 | 14.500004 | 4 |
CTAGTAC | 9445 | 0.0 | 14.084139 | 3 |
CCGTGAG | 7800 | 0.0 | 13.735345 | 9 |
CATACAC | 70590 | 0.0 | 13.684043 | 3 |
TCTATAC | 14890 | 0.0 | 13.605935 | 3 |
ATACCGT | 7155 | 0.0 | 13.39777 | 6 |
GTCGCGC | 2000 | 0.0 | 13.391963 | 8 |
TAGACCG | 7665 | 0.0 | 13.181205 | 5 |
ACCGTGA | 10090 | 0.0 | 13.17937 | 8 |
ACATGAC | 50555 | 0.0 | 13.086934 | 8 |
GTGTATG | 67910 | 0.0 | 12.977603 | 1 |
TACCGTG | 6805 | 0.0 | 12.843622 | 7 |
ACACATG | 69400 | 0.0 | 12.756556 | 6 |
TAATACT | 20510 | 0.0 | 12.719566 | 4 |
GACCGTG | 6035 | 0.0 | 12.613641 | 7 |
AGACCGT | 7620 | 0.0 | 12.580191 | 6 |
TAGTACT | 17990 | 0.0 | 12.5155325 | 4 |
CTAGGCT | 6590 | 0.0 | 12.482387 | 4 |