FastQCFastQC Report
Tue 15 Nov 2016
SRR1946004.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946004.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43086694
Sequences flagged as poor quality0
Sequence length101
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC76150.06.414948-49
GCCGTCT79450.06.08817548-49
TATGCCG86800.06.013736746-47
TCGGAAG202100.05.99553873
GAGCACA193450.05.72940169
ATGCCGT85250.05.392802746-47
GCACACG100600.05.368324310-11
AGAGCAC207400.05.274928