FastQCFastQC Report
Tue 15 Nov 2016
SRR1946046.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946046.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35563672
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGAGCG174500.022.29127794
TGAGCGG153100.019.92774294
AGACCGG93900.016.76972894
CTAGTAC130750.015.1468113
TATACCG124550.015.0734965
TGATGGC229800.014.3981694
GTATAGA266650.013.6136291
ATACCGT118000.013.5643396
TACCGTG98700.013.4190947
TCTATAC234600.013.3711683
TCTGAGC302000.013.29922194
TATACTG176400.012.9519345
GCGTGTA69450.012.77708892-93
AGGCGTG71750.012.61828490-91
TGGCGCG70650.012.54934978-79
CTGATGG337550.012.5372494
CTATACT179550.012.4118044
ACCGTGA118550.012.3546418
CCGTGAG90500.012.3052929
CCTAGTA144950.012.2757612