FastQCFastQC Report
Wed 16 Nov 2016
SRR1945954.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945954.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74730596
Sequences flagged as poor quality0
Sequence length40-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG459500.017.6894514
AGAGCGT251950.016.465459
GGTCGCC113000.014.90378944-45
CCGTACG131850.014.35669534-35
GATCGGA576700.014.262792
CGGAAGA579450.014.1882915
AAGAGCG317500.013.285988
ATCGGAA633500.013.1949343
CGCCGTA126450.012.92528946-47
TGCCGTC129250.012.62135350-51
TATGCCG132050.012.58730148-49
GAGCGTC165700.012.504024510-11
GCACACG160350.012.26707412-13
AGCGTCG174750.012.08293310-11
TGGTCGC138600.012.01620142-43
ATGCCGT140800.011.78634450-51
CGTACGT158650.011.77005234-35
GAAGAGC724900.011.4648727
GCCGTCT142700.011.33171552-53
GCGTCGT186100.011.18264112-13