Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946219.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18482682 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 22603 | 0.12229285771404821 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 9685 | 0.0 | 17.13012 | 5 |
CTATACT | 9955 | 0.0 | 16.618303 | 4 |
TATACCG | 6750 | 0.0 | 16.223234 | 5 |
ACATGAC | 45945 | 0.0 | 16.080502 | 8 |
CATACAC | 55615 | 0.0 | 15.938045 | 3 |
GTCGCGC | 1160 | 0.0 | 15.801267 | 8 |
CATGACA | 46435 | 0.0 | 15.647656 | 9 |
ACACATG | 56840 | 0.0 | 15.4870615 | 6 |
GAGCGCG | 1255 | 0.0 | 15.354137 | 7 |
CACATGA | 55340 | 0.0 | 15.278379 | 7 |
TCTATAC | 12575 | 0.0 | 15.024614 | 3 |
GTGTATG | 50685 | 0.0 | 14.729521 | 1 |
ATACCGT | 6140 | 0.0 | 14.160828 | 6 |
TCATACA | 61430 | 0.0 | 14.146262 | 2 |
ATCATAC | 60190 | 0.0 | 13.858118 | 1 |
TACCGTG | 5410 | 0.0 | 13.812909 | 7 |
GTATAGA | 13520 | 0.0 | 13.682982 | 1 |
GATTGAG | 48405 | 0.0 | 13.622373 | 7 |
TAATACT | 14505 | 0.0 | 13.446698 | 4 |
TTGAGTA | 52040 | 0.0 | 13.3843155 | 9 |