Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946044.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35577570 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 13440 | 0.0 | 18.009867 | 5 |
GTCGCGC | 1640 | 0.0 | 17.120071 | 8 |
ATACCGT | 12225 | 0.0 | 16.079224 | 6 |
TACCGTG | 11045 | 0.0 | 15.974846 | 7 |
TCTATAC | 23160 | 0.0 | 15.141765 | 3 |
CCGTGAG | 9805 | 0.0 | 15.032519 | 9 |
TATACTG | 17975 | 0.0 | 14.533978 | 5 |
CTAGTAC | 13240 | 0.0 | 14.109712 | 3 |
CTATACT | 18585 | 0.0 | 13.90581 | 4 |
ACCGTGA | 12960 | 0.0 | 13.431858 | 8 |
TCGCGCG | 2110 | 0.0 | 13.305697 | 9 |
CATACAC | 83010 | 0.0 | 12.752736 | 3 |
GTATAGA | 26825 | 0.0 | 12.676375 | 1 |
GTACTAC | 14560 | 0.0 | 12.536259 | 6 |
TAGTACT | 25635 | 0.0 | 12.163561 | 4 |
GTACTAG | 16945 | 0.0 | 12.16212 | 1 |
ACACATG | 81850 | 0.0 | 11.939234 | 6 |
GTATAGG | 13030 | 0.0 | 11.898213 | 1 |
CTATACC | 19960 | 0.0 | 11.821968 | 4 |
ACATGAC | 66385 | 0.0 | 11.800044 | 8 |