Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945794.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 45265486 |
Sequences flagged as poor quality | 0 |
Sequence length | 110 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 8535 | 0.0 | 11.192366 | 1 |
CGAGATC | 26135 | 0.0 | 8.652852 | 18-19 |
CCGAGAT | 34530 | 0.0 | 6.8335133 | 16-17 |
GAGCGTG | 8770 | 0.0 | 6.445339 | 104 |
GTTCAGC | 58520 | 0.0 | 6.2651763 | 3 |
CAGGAAT | 59115 | 0.0 | 6.2455287 | 9 |
TATGCCG | 10505 | 0.0 | 6.1108265 | 62-63 |
ATGCCGT | 10650 | 0.0 | 5.7844343 | 64-65 |
CGGTTCA | 65080 | 0.0 | 5.695846 | 1 |
CGTATGC | 12115 | 0.0 | 5.683578 | 60-61 |
GTATGCC | 12185 | 0.0 | 5.652225 | 62-63 |
CAGCAGG | 65950 | 0.0 | 5.6223154 | 6 |
GCAGGAA | 66675 | 0.0 | 5.615538 | 8 |
GGTTCAG | 67495 | 0.0 | 5.508874 | 2 |
TTCAGCA | 69895 | 0.0 | 5.4681816 | 4 |
CCGGCAT | 6380 | 0.0 | 5.4520736 | 1 |
TCAGCAG | 71315 | 0.0 | 5.359325 | 5 |
ATTCCTG | 15770 | 0.0 | 5.294411 | 5 |
GAATGCG | 9725 | 0.0 | 5.1127625 | 104 |
AGCAGGA | 73710 | 0.0 | 5.06554 | 7 |