Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946055.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40618256 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 14735 | 0.0 | 14.320475 | 5 |
CTATACT | 22665 | 0.0 | 13.892496 | 4 |
TATACTG | 21405 | 0.0 | 13.678359 | 5 |
TAGACTG | 9055 | 0.0 | 13.027061 | 5 |
TCTATAC | 28010 | 0.0 | 12.58373 | 3 |
GTATAGA | 30025 | 0.0 | 11.748886 | 1 |
TACCGTG | 10960 | 0.0 | 11.663249 | 7 |
GTATAGG | 15865 | 0.0 | 11.502973 | 1 |
ATACCGT | 16760 | 0.0 | 11.496644 | 6 |
TATACAG | 25855 | 0.0 | 11.487717 | 5 |
CCGTGAG | 8700 | 0.0 | 11.398225 | 9 |
GCCGTGC | 3965 | 0.0 | 11.26018 | 8 |
CCGTGCG | 3265 | 0.0 | 11.227562 | 9 |
CATACAC | 76055 | 0.0 | 11.2214575 | 3 |
GTATTAG | 31030 | 0.0 | 11.110681 | 1 |
ACATGAC | 62830 | 0.0 | 10.950626 | 8 |
ACTGTGC | 6665 | 0.0 | 10.929404 | 8 |
ACACATG | 76195 | 0.0 | 10.898614 | 6 |
TAATACT | 41370 | 0.0 | 10.894174 | 4 |
CTAGTAC | 13495 | 0.0 | 10.760855 | 3 |