Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946127.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23683734 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 7685 | 0.0 | 13.273549 | 5 |
CCGTGAG | 6015 | 0.0 | 12.50155 | 9 |
GCCGTGC | 2680 | 0.0 | 12.276275 | 8 |
TATACTG | 12155 | 0.0 | 11.988862 | 5 |
ACCGTGA | 7710 | 0.0 | 11.582506 | 8 |
TCTATAC | 15390 | 0.0 | 11.485642 | 3 |
GTATAGA | 16740 | 0.0 | 11.2932005 | 1 |
TACCGTG | 6415 | 0.0 | 11.063833 | 7 |
GTATTAG | 14675 | 0.0 | 11.023683 | 1 |
CATACAC | 62815 | 0.0 | 10.896929 | 3 |
TATACAG | 10985 | 0.0 | 10.82659 | 5 |
CTATACT | 12470 | 0.0 | 10.819857 | 4 |
ATACCGT | 7475 | 0.0 | 10.752634 | 6 |
ACATGAC | 50470 | 0.0 | 10.634968 | 8 |
CATGACA | 51670 | 0.0 | 10.387407 | 9 |
CTAGTAC | 8060 | 0.0 | 10.382238 | 3 |
ACACATG | 62020 | 0.0 | 10.375323 | 6 |
GAGCGCG | 1560 | 0.0 | 10.244239 | 7 |
CACATGA | 60780 | 0.0 | 10.130618 | 7 |
GTATATA | 34790 | 0.0 | 10.124506 | 1 |