FastQCFastQC Report
Tue 15 Nov 2016
SRR1946117.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946117.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35706752
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG132450.016.465085
TACCGTG110100.015.11078557
ATACCGT112550.014.7821026
CTAGTAC121500.014.469843
CCGTGAG96700.014.0941129
TCTATAC220900.013.8533143
ACCGTGA127450.013.4962268
TATACTG173200.013.1339495
CTATACT177650.012.8598844
GTACTAG166050.012.7695451
TAGTACT240250.012.4831234
ACATGAC856750.012.2985138
GTACTAC134800.012.1678526
GTATAGA235350.012.0059921
CATACAC1216400.011.9721863
CTATACC181450.011.8392784
CATGACA877150.011.8194679
ACACATG1196950.011.7519286
TATACAG149700.011.6479635
CACATGA1151000.011.612497