Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945776.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 109519720 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 17585 | 0.0 | 8.73809 | 48-49 |
GCCGTCT | 18665 | 0.0 | 8.076417 | 48-49 |
ATGCCGT | 20340 | 0.0 | 7.7010922 | 46-47 |
GAGCACA | 45915 | 0.0 | 7.616385 | 9 |
TATGCCG | 22200 | 0.0 | 7.5724163 | 46-47 |
TCGGAAG | 49665 | 0.0 | 7.504681 | 3 |
GCACACG | 24650 | 0.0 | 7.0127683 | 10-11 |
GTATGCC | 23955 | 0.0 | 6.8937025 | 44-45 |
AGAGCAC | 50175 | 0.0 | 6.8862777 | 8 |
CGTATGC | 25075 | 0.0 | 6.8581696 | 44-45 |
CATCACG | 31850 | 0.0 | 5.8353934 | 32-33 |
CACACGT | 30350 | 0.0 | 5.7304263 | 12-13 |
CAGTCAC | 34970 | 0.0 | 5.5778165 | 26-27 |
CGTCTGA | 33410 | 0.0 | 5.5505157 | 16-17 |
ACGTCTG | 32400 | 0.0 | 5.492697 | 14-15 |
GATCGGA | 63825 | 0.0 | 5.4619265 | 1 |
CGGAAGA | 75015 | 0.0 | 5.3991904 | 4 |
ATCGGAA | 78340 | 0.0 | 5.350142 | 2 |