Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946258.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31366804 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 11395 | 0.0 | 18.437792 | 5 |
AGACCGC | 7185 | 0.0 | 16.814276 | 94 |
ATACCGT | 10030 | 0.0 | 16.397602 | 6 |
CCGTGAG | 7655 | 0.0 | 15.345598 | 9 |
TACCGTG | 9560 | 0.0 | 15.335678 | 7 |
TCTATAC | 18165 | 0.0 | 14.801845 | 3 |
ACCGTGA | 10650 | 0.0 | 13.942622 | 8 |
GTATAGA | 21000 | 0.0 | 13.777528 | 1 |
CTAGTAC | 10165 | 0.0 | 13.503012 | 3 |
CTATACC | 16600 | 0.0 | 12.516109 | 4 |
ACATGAC | 82230 | 0.0 | 12.063268 | 8 |
CATACAC | 100755 | 0.0 | 12.013396 | 3 |
CTATACT | 14200 | 0.0 | 11.917067 | 4 |
TATACTG | 13785 | 0.0 | 11.797366 | 5 |
ACACATG | 101695 | 0.0 | 11.796806 | 6 |
GTACTAG | 12495 | 0.0 | 11.784838 | 1 |
CACATGA | 98560 | 0.0 | 11.556817 | 7 |
CATGACA | 85870 | 0.0 | 11.491239 | 9 |
GTGTATG | 98370 | 0.0 | 11.473162 | 1 |
GTATTAG | 16485 | 0.0 | 11.101359 | 1 |