Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946085.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 63644370 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 15495 | 0.0 | 35.43969 | 53 |
CGCCGTA | 14780 | 0.0 | 34.7681 | 56 |
GCCGTAT | 15345 | 0.0 | 33.905952 | 57 |
TGGTCGC | 16915 | 0.0 | 31.744799 | 52 |
CCGTATC | 17065 | 0.0 | 30.587013 | 58 |
CGTATCA | 19975 | 0.0 | 27.054317 | 59 |
GTCGCCG | 22505 | 0.0 | 25.049599 | 54 |
CTCGGTG | 23505 | 0.0 | 24.195606 | 47 |
TCGGTGG | 23700 | 0.0 | 24.10277 | 48 |
CGTGTAG | 20800 | 0.0 | 23.387741 | 25 |
GAGCGTC | 21865 | 0.0 | 22.332977 | 19 |
AGCGTCG | 22130 | 0.0 | 22.108385 | 20 |
GCGTCGT | 22195 | 0.0 | 21.9875 | 21 |
TATGCCG | 9320 | 0.0 | 21.95543 | 53 |
TCGCCGT | 23555 | 0.0 | 21.657114 | 55 |
GGTGGTC | 25470 | 0.0 | 21.522255 | 50 |
GTCGTGT | 23250 | 0.0 | 20.77442 | 23 |
AAGAGCG | 49730 | 0.0 | 20.32483 | 17 |
TCGGAAG | 50740 | 0.0 | 20.072914 | 13 |
CGTATGC | 11275 | 0.0 | 20.05049 | 51 |