FastQCFastQC Report
Tue 15 Nov 2016
SRR1945999.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945999.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37707448
Sequences flagged as poor quality0
Sequence length101
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC224950.08.35861694-95
GCCGTCT191850.08.02402948-49
TGCCGTC194400.07.967581748-49
TGGTCGC246750.07.55262494-95
CTGCTTG209550.07.481079656-57
GTCGCCG243400.07.4218994-95
TATGCCG230500.07.20738694-95
CGTATGC287200.07.16844594-95
CGCCGTA147250.07.079654794-95
ATGCCGT217100.06.971789446-47
CCGTCTT249700.06.7121650-51
GTATGCC265650.06.647944594-95
GCCGTAT156650.06.578861794-95
CTCGGTG431200.06.50771294-95
TCTCGGG121150.06.48311694-95
TCGTATG351450.06.338778594-95
GATCTCG946050.06.324765794-95
TCGGTGG425050.06.293895794-95
CTCGTAT358800.06.2686394-95
GCGTCGG85100.06.20892994-95