Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946216.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23969298 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 27648 | 0.11534755836403719 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 8820 | 0.0 | 18.117414 | 5 |
TACCGTG | 6570 | 0.0 | 17.311548 | 7 |
CCGTGAG | 5880 | 0.0 | 16.785254 | 9 |
ATACCGT | 7685 | 0.0 | 15.961825 | 6 |
ACCGTGA | 7790 | 0.0 | 15.686346 | 8 |
CTATACT | 12035 | 0.0 | 15.152056 | 4 |
TCTATAC | 15235 | 0.0 | 15.116094 | 3 |
TATACTG | 11480 | 0.0 | 14.90203 | 5 |
CATACAC | 74805 | 0.0 | 14.199195 | 3 |
GTATAGA | 16150 | 0.0 | 13.930882 | 1 |
ACATGAC | 68390 | 0.0 | 13.922998 | 8 |
CTATACC | 12560 | 0.0 | 13.620645 | 4 |
CATGACA | 70005 | 0.0 | 13.433957 | 9 |
ACACATG | 77975 | 0.0 | 13.380844 | 6 |
CACATGA | 75700 | 0.0 | 13.199373 | 7 |
CTAGGCT | 5220 | 0.0 | 12.875125 | 4 |
GTGTATG | 71365 | 0.0 | 12.827961 | 1 |
TCATACA | 83055 | 0.0 | 12.732177 | 2 |
ATCATAC | 83130 | 0.0 | 12.303402 | 1 |
TAGGCTG | 6500 | 0.0 | 12.147359 | 5 |