Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946125.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38318744 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 13070 | 0.0 | 13.595157 | 5 |
GTCGCGC | 2235 | 0.0 | 12.827888 | 8 |
TCTATAC | 23590 | 0.0 | 12.455233 | 3 |
TATACTG | 18180 | 0.0 | 12.023395 | 5 |
CTATACT | 19815 | 0.0 | 11.767585 | 4 |
TACCGTG | 10855 | 0.0 | 11.647786 | 7 |
CATACAC | 115245 | 0.0 | 11.450384 | 3 |
ACATGAC | 90130 | 0.0 | 11.441159 | 8 |
CCGTGAG | 9205 | 0.0 | 11.334563 | 9 |
TAGGCTG | 11515 | 0.0 | 11.063011 | 5 |
ACACATG | 116155 | 0.0 | 11.043218 | 6 |
CATGACA | 93885 | 0.0 | 11.027926 | 9 |
GTATAGA | 25170 | 0.0 | 11.005185 | 1 |
ATACCGT | 11715 | 0.0 | 10.913314 | 6 |
CACATGA | 111450 | 0.0 | 10.9103155 | 7 |
CTAGGCT | 11135 | 0.0 | 10.892541 | 4 |
GTACTAG | 15990 | 0.0 | 10.705778 | 1 |
GTGTATG | 110785 | 0.0 | 10.616907 | 1 |
TATACAG | 18285 | 0.0 | 10.591812 | 5 |
GTATATA | 58410 | 0.0 | 10.547497 | 1 |