Basic Statistics
Measure | Value |
---|---|
Filename | SRR1945987.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44179002 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 280862 | 0.6357364070831659 | No Hit |
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC | 191719 | 0.4339595539075329 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 8965 | 0.0 | 26.8163 | 1 |
TATGCCG | 7135 | 0.0 | 25.896559 | 63 |
CGTATGC | 8385 | 0.0 | 23.247875 | 61 |
ATGCCGT | 7810 | 0.0 | 22.582525 | 64 |
GCCGTAT | 6440 | 0.0 | 22.381529 | 67 |
CGCCGTA | 6215 | 0.0 | 22.058645 | 66 |
GGTCGCC | 6550 | 0.0 | 21.78605 | 63 |
CGAGATC | 22010 | 0.0 | 20.9374 | 18 |
GTATGCC | 9150 | 0.0 | 20.61426 | 62 |
TGCCGTC | 8200 | 0.0 | 20.566391 | 65 |
GCCGTCT | 8435 | 0.0 | 19.703186 | 66 |
CCGAGAT | 25690 | 0.0 | 18.22468 | 17 |
TCGTATG | 12700 | 0.0 | 16.92334 | 60 |
CCGTATC | 7900 | 0.0 | 16.383074 | 68 |
AACCGAG | 13505 | 0.0 | 15.912312 | 15 |
GCTGAAC | 13180 | 0.0 | 15.723001 | 11 |
CCTGCTG | 13705 | 0.0 | 15.451863 | 8 |
TGAACCG | 14515 | 0.0 | 14.974141 | 13 |
GGCATTC | 16080 | 0.0 | 14.761294 | 2 |
ATTCCTG | 15285 | 0.0 | 14.746667 | 5 |