Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946039.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 61050052 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 18175 | 0.0 | 14.33566 | 5 |
CTATACT | 31610 | 0.0 | 14.021862 | 4 |
TATACTG | 30405 | 0.0 | 13.602855 | 5 |
CCGTGCG | 3430 | 0.0 | 13.550651 | 9 |
TCTATAC | 38105 | 0.0 | 13.12278 | 3 |
CATACAC | 167020 | 0.0 | 12.88648 | 3 |
CTAGTAC | 19045 | 0.0 | 12.647206 | 3 |
GTATAGG | 21005 | 0.0 | 12.482383 | 1 |
TATACAG | 27390 | 0.0 | 12.323556 | 5 |
ACACATG | 160865 | 0.0 | 12.309969 | 6 |
ACATGAC | 143055 | 0.0 | 12.28717 | 8 |
CATGACA | 145615 | 0.0 | 11.964758 | 9 |
GTATAGA | 40160 | 0.0 | 11.887375 | 1 |
CACATGA | 156785 | 0.0 | 11.869922 | 7 |
GTACTAG | 22375 | 0.0 | 11.508097 | 1 |
TAGACCG | 14490 | 0.0 | 11.469224 | 5 |
TAGTACT | 35605 | 0.0 | 11.446348 | 4 |
TCATACA | 185090 | 0.0 | 11.384824 | 2 |
TACCGTG | 13645 | 0.0 | 11.31986 | 7 |
GTGTATG | 160780 | 0.0 | 11.199005 | 1 |