Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946202.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20908174 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATACT | 10505 | 0.0 | 14.092681 | 4 |
CATACAC | 51700 | 0.0 | 13.590941 | 3 |
TATACCG | 6605 | 0.0 | 13.448322 | 5 |
TATACTG | 10595 | 0.0 | 13.396307 | 5 |
ACATGAC | 42030 | 0.0 | 12.769853 | 8 |
ACACATG | 51505 | 0.0 | 12.747534 | 6 |
CATGACA | 43000 | 0.0 | 12.4489975 | 9 |
TCTATAC | 12445 | 0.0 | 12.387333 | 3 |
CACATGA | 49925 | 0.0 | 12.209588 | 7 |
GTATAGG | 7005 | 0.0 | 12.095397 | 1 |
TCATACA | 57535 | 0.0 | 12.033136 | 2 |
GTATATA | 30210 | 0.0 | 11.9664755 | 1 |
TATACAG | 8775 | 0.0 | 11.9436455 | 5 |
GTATTAT | 16635 | 0.0 | 11.799647 | 1 |
ATCATAC | 54875 | 0.0 | 11.725997 | 1 |
GTGTATG | 49210 | 0.0 | 11.679333 | 1 |
GTCGCGC | 805 | 5.456968E-12 | 11.676516 | 8 |
GTATTAG | 12620 | 0.0 | 11.488071 | 1 |
TATACTA | 20260 | 0.0 | 11.250749 | 5 |
TAGGGTG | 4605 | 0.0 | 11.226443 | 5 |