FastQCFastQC Report
Tue 15 Nov 2016
SRR1946234.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946234.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12294422
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC6450.018.2165418
TATACCG42850.015.903875
CAGTGCC21850.015.271889
CTATACT62700.015.066564
CCGTGAG25700.014.8128129
TATACTG61400.014.6201095
CTGCGCG7900.014.2780789
CCGTGCG8350.014.0714599
TAATACT104650.014.0569374
TACCCTG34400.013.7990295
TTACACT63400.013.7141244
GTATAGA85900.013.7007091
CAGCACT34800.013.640424
ACAGTGC23550.013.5707448
TAGACCT57300.013.5336494
TCTATAC76050.013.3487373
ACCGTGA38750.013.0989868
ATACCGT38750.013.0989866
TTACCCT66700.012.7537634
TACACAG42550.012.7023455