FastQCFastQC Report
Tue 15 Nov 2016
SRR1946150.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946150.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34874814
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG115050.014.5837235
TCTATAC222100.012.527393
CTATACT171600.011.9962164
GTCGCGC13900.011.8341648
TATACTG161900.011.727935
CATACAC885050.011.7251593
GTATAGA222700.011.5916791
CCGTGAG89400.011.5130989
TACCGTG86550.011.4577927
ATACCGT105550.011.3099916
CTAGTAC112300.011.2998183
TAGGCTG99400.011.158675
ACATGAC790800.010.90570458
TAGTACT205700.010.898624
CTAGGCT85950.010.8269664
ACCGTGA116650.010.7574878
ACACATG889000.010.6897176
CATGACA800650.010.6072069
CTATACC172950.010.5438354
GTACTAC119800.010.4354616