Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946196.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 17582102 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 8395 | 0.0 | 15.059712 | 5 |
CCGTGCG | 1135 | 0.0 | 14.907052 | 9 |
TATACCG | 5970 | 0.0 | 13.934264 | 5 |
TCTATAC | 11075 | 0.0 | 13.91923 | 3 |
GCCGTGC | 1855 | 0.0 | 13.68154 | 8 |
CATACAC | 43885 | 0.0 | 13.654608 | 3 |
TAATACT | 14345 | 0.0 | 13.629436 | 4 |
CTATACT | 9215 | 0.0 | 13.362603 | 4 |
GTATAGA | 11630 | 0.0 | 13.072779 | 1 |
ACACATG | 42555 | 0.0 | 13.010075 | 6 |
ACATGAC | 33595 | 0.0 | 12.954524 | 8 |
CCGTGAG | 4330 | 0.0 | 12.807938 | 9 |
CACATGA | 41205 | 0.0 | 12.55806 | 7 |
CATGACA | 34725 | 0.0 | 12.438224 | 9 |
GTGTATG | 42495 | 0.0 | 12.383662 | 1 |
TAGTACT | 11245 | 0.0 | 11.869816 | 4 |
TCATACA | 49210 | 0.0 | 11.795054 | 2 |
ATACCGT | 5380 | 0.0 | 11.793334 | 6 |
ATAATAC | 13850 | 0.0 | 11.707237 | 3 |
TACACTG | 5175 | 0.0 | 11.624781 | 5 |