Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946247.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22621368 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 10695 | 0.0 | 15.203745 | 5 |
TATACCG | 6705 | 0.0 | 13.667564 | 5 |
CATACAC | 61995 | 0.0 | 13.040847 | 3 |
TCTATAC | 13355 | 0.0 | 13.022424 | 3 |
CTATACT | 11365 | 0.0 | 12.531618 | 4 |
GTGTATG | 61320 | 0.0 | 12.418705 | 1 |
TACCGTG | 5300 | 0.0 | 12.413164 | 7 |
ACATGAC | 51160 | 0.0 | 12.381913 | 8 |
CCGTGCG | 1315 | 0.0 | 12.150014 | 9 |
ACACATG | 63245 | 0.0 | 12.148613 | 6 |
CATGACA | 51730 | 0.0 | 12.072746 | 9 |
ATACCGT | 6050 | 0.0 | 11.884233 | 6 |
TATACAG | 10395 | 0.0 | 11.844918 | 5 |
GTATATA | 33115 | 0.0 | 11.824927 | 1 |
CACATGA | 60925 | 0.0 | 11.685502 | 7 |
TCATACA | 69545 | 0.0 | 11.571026 | 2 |
GATTGAG | 56835 | 0.0 | 11.459817 | 7 |
GTATAGA | 14355 | 0.0 | 11.3441725 | 1 |
ATCATAC | 68770 | 0.0 | 11.292362 | 1 |
TTGAGTA | 60190 | 0.0 | 11.164398 | 9 |