FastQCFastQC Report
Tue 15 Nov 2016
SRR1946051.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946051.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48632376
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG159500.015.021855
CTAGGCT142100.013.8533224
GCTGTCC134400.013.8076788
CTATACT247850.013.7240934
CATACAC1339400.013.51173
TCTATAC289050.013.4095743
TATACAG221150.013.4046765
TATACTG239650.013.3892785
TACCGTG121900.013.1038247
CTGTCCC165550.012.9974799
ACATGAC1127850.012.99649058
TAGGCTG164700.012.8646175
ACACATG1412950.012.8412136
GTCGCGC25650.012.8213438
CACATGA1355450.012.5818927
CATGACA1168350.012.4896819
TATAGTG230250.012.3647945
TCATACA1476550.012.1770872
ATACCGT126650.012.0929716
CGCCTAG128450.012.0054731