FastQCFastQC Report
Wed 16 Nov 2016
SRR1945846.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945846.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20308946
Sequences flagged as poor quality0
Sequence length101
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG138650.06.765671794-95
GATCGGA189400.06.10636494-95
ATCGGAA186700.05.60954994-95
GAGCGTC41850.05.504494-95
CGGAAGA165650.05.47653294-95
AGCGTCG42600.05.18450294-95