FastQCFastQC Report
Tue 15 Nov 2016
SRR1946154.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946154.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38716128
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG127650.012.4815335
GTATAGA254350.011.572881
TCTATAC235350.011.5625443
TATACTG186000.011.4465425
CTAGTAC115250.011.4184243
TACCGTG95750.011.2894867
CCGTGAG90350.010.8198269
ATACCGT114050.010.7555356
CTATACT198650.010.6703094
CATACAC1023050.010.4881313
GTACTAG151650.010.4492791
ACACATG1005900.010.23236756
ACATGAC778750.010.2295428
TACTAGG174400.010.0790272
ACCGTGA126100.09.9885918
TATACAG170400.09.9845395
CATGACA793200.09.9720989
CTATACC180950.09.947854
TAGTACT227750.09.8847614
CACATGA981750.09.8329697