FastQCFastQC Report
Wed 16 Nov 2016
SRR1945794.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1945794.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45265486
Sequences flagged as poor quality0
Sequence length110
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT85350.011.1923661
CGAGATC261350.08.65285218-19
CCGAGAT345300.06.833513316-17
GAGCGTG87700.06.445339104
GTTCAGC585200.06.26517633
CAGGAAT591150.06.24552879
TATGCCG105050.06.110826562-63
ATGCCGT106500.05.784434364-65
CGGTTCA650800.05.6958461
CGTATGC121150.05.68357860-61
GTATGCC121850.05.65222562-63
CAGCAGG659500.05.62231546
GCAGGAA666750.05.6155388
GGTTCAG674950.05.5088742
TTCAGCA698950.05.46818164
CCGGCAT63800.05.45207361
TCAGCAG713150.05.3593255
ATTCCTG157700.05.2944115
GAATGCG97250.05.1127625104
AGCAGGA737100.05.065547