Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946527.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44013944 |
Sequences flagged as poor quality | 0 |
Sequence length | 36-64 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 6075 | 0.0 | 17.820679 | 58 |
AGCGGTT | 6305 | 0.0 | 15.902463 | 57 |
AGAGCGG | 9255 | 0.0 | 14.924433 | 58 |
GCGGTTC | 5150 | 0.0 | 13.047815 | 58 |
TCGGAAG | 10095 | 0.0 | 12.942979 | 58 |
GATCGGA | 12165 | 0.0 | 10.206031 | 51 |
AAGAGCG | 10675 | 0.0 | 10.19034 | 56 |
TAGATCG | 6925 | 6.0936145E-10 | 9.16435 | 58 |
ATCGGAA | 12660 | 0.0 | 9.119803 | 57 |
CGAGCGG | 3955 | 0.003079627 | 8.495101 | 58 |
ACGAGCG | 3480 | 0.006217974 | 7.8577614 | 57 |
CGGAAGA | 12905 | 0.0 | 7.8273335 | 56 |
AGATCGG | 23455 | 0.0 | 7.639735 | 58 |
TGCCGAG | 4655 | 1.829274E-6 | 7.0883846 | 46 |
GAAGAGC | 16250 | 0.0 | 6.694269 | 56 |
CAGATCG | 6330 | 1.8989522E-6 | 6.4872627 | 58 |
AATGCCG | 4410 | 5.9995655E-5 | 6.485554 | 44 |
CGGTTCA | 7670 | 5.0082235E-8 | 6.0913644 | 50 |
CCGGCAT | 3370 | 0.008841384 | 6.0204034 | 40 |
GTTCAGC | 6760 | 1.5618209E-5 | 5.8039517 | 53 |