Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946513.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25768316 |
Sequences flagged as poor quality | 0 |
Sequence length | 36-64 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 7000 | 0.0 | 25.017302 | 1 |
GGCATTC | 8450 | 0.0 | 21.098396 | 2 |
GCTGAAC | 8815 | 0.0 | 19.227839 | 11 |
GCATTCC | 9160 | 0.0 | 19.178017 | 3 |
CCTGCTG | 9010 | 0.0 | 19.126352 | 8 |
CGTGTAG | 8075 | 0.0 | 18.66131 | 35 |
ATTCCTG | 9455 | 0.0 | 18.52795 | 5 |
AGTGTAG | 8620 | 0.0 | 18.48054 | 48 |
GAGTGTA | 8305 | 0.0 | 18.374231 | 47 |
GCGTCGT | 8620 | 0.0 | 17.63142 | 31 |
GTCGTGT | 8645 | 0.0 | 17.33619 | 33 |
CGAGATC | 12705 | 0.0 | 17.322086 | 18 |
GTAGGGA | 9085 | 0.0 | 17.280083 | 38 |
TTCCTGC | 10030 | 0.0 | 17.27564 | 6 |
TGAACCG | 9690 | 0.0 | 17.272087 | 13 |
TGTAGGG | 9200 | 0.0 | 17.003109 | 37 |
TCGTGTA | 8770 | 0.0 | 16.994154 | 34 |
CCGAGAT | 13280 | 0.0 | 16.875332 | 17 |
GTGTAGA | 9435 | 0.0 | 16.2012 | 49 |
CTGAACC | 10540 | 0.0 | 16.03633 | 12 |