FastQCFastQC Report
Mon 14 Nov 2016
SRR1946480.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946480.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24490204
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG129750.012.7131325
TATACCG76800.012.483085
CTATACT134400.012.37818054
CATACAC678100.011.8232833
GCCGTGC27150.011.5975138
ACATGAC622100.011.3240398
GTATATA354000.011.3210461
ACACATG729200.011.1494426
CATGACA632150.010.98070059
TCTATAC155600.010.90311053
CACATGA701200.010.877537
GTATAGA158750.010.87433051
GTGTATG658500.010.5434031
CCGTGCG15250.010.4780089
TCATACA752050.010.3857532
ATCATAC725450.010.3290051
TATACAG117350.010.2119795
ATACCGT72350.09.9381736
TATACTA228500.09.8103615
TACCGTG56350.09.7576597