FastQCFastQC Report
Mon 14 Nov 2016
SRR1946487.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946487.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50714056
Sequences flagged as poor quality0
Sequence length33-64
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT80150.06.7488911
AATGCCG74250.05.06817913