FastQCFastQC Report
Mon 14 Nov 2016
SRR1946479.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946479.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37922428
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG194050.011.5281595
TATACCG125050.010.59825
CATACAC933250.010.4643963
GTATTAG234600.010.2862091
CCGTGCG18950.010.1684039
TCTATAC259650.010.0816953
GTATAGA276750.010.0793621
CTATACT203450.010.071534
ACACATG932950.09.74237256
TACCGTG95100.09.7353687
ATACCGT119700.09.6977176
CTAGTAC136250.09.5890363
ACATGAC756250.09.5827898
CCGTGAG108250.09.3344499
CATGACA770450.09.2903819
GTATTAT309050.09.2846821
TCATACA1033650.09.1842922
CACATGA901800.09.1512617
GTGTATG910050.09.1231621
GTATATA588400.09.0897881