FastQCFastQC Report
Mon 14 Nov 2016
SRR1946503.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946503.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27430060
Sequences flagged as poor quality0
Sequence length36-42
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGTAG20950.010.95199235
GTGTAGG36000.010.01053336
GCGTCGT16050.07.97976231
CGTCGTG20650.07.061826732
CGGCATT18800.06.8863781
GTCGTGT25000.06.54028633
AGCGTCG17950.06.14460130
AATGCCG21100.06.02968813
GAGCGTC17800.06.01575129
TCGGAAG39000.05.994048623
CCTGCTG24750.05.9391838
CCGAGAT39000.05.790475417
CGAGATC42850.05.789534618
TGCCGAG19400.05.41040215
GAGATCG47100.05.402139719
TCGTGTA29651.0573785E-85.297759534
GGCATTC28250.05.2603862
ATGCCGA23400.05.23314714