FastQCFastQC Report
Mon 14 Nov 2016
SRR1946566.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946566.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77721168
Sequences flagged as poor quality0
Sequence length100
%GC36

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG339950.024.493794
GATCGGA430050.019.3959182
AGAGCGT194300.018.5620339
CGGAAGA450650.018.5574155
ATCGGAA479850.017.7060723
GCACACG134200.017.02464112-13
GGTCGCC100000.016.70749944-45
AAGAGCG249800.015.0580728
AGAGCAC311350.014.8718569
CGCCGTA108500.014.61548846-47
GAAGAGC587400.014.5501257
GAGCGTC124900.014.45682210-11
AGCGTCG124400.014.25067810-11
GCGTCGT131250.013.38196612-13
TATGCCG124650.013.04202348-49
TGCCGTC121500.012.80367550-51
AGTCACG155350.012.36118128-29
TGGTCGC135400.012.01176842-43
CGTATGC141500.011.88764646-47
CACACGT207650.011.81685712-13