FastQCFastQC Report
Mon 14 Nov 2016
SRR1946552.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946552.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33276492
Sequences flagged as poor quality0
Sequence length100-151
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGAGAAGCAAGAAGAAGGTTGGTTAGTGTTTTGGAGTCGAATATGAC428410.12874253692366372No Hit
CTCGTCTCTCGAGGTTAAATGTTATTACTTGGTAAGATTCCGGACCTCGC367070.1103091034956449No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGG202800.054.330058
CTCACGG106800.054.036792
CCTCACG125600.047.858811
CTCGAGG114750.045.010448
CACGGTC86800.044.3736084
CACCATG281650.043.8504184
TCACGGT142000.040.7751543
ACGTGAT189500.039.0843962
CTACACC353950.039.014091
TCGAGGT138000.037.6559339
ATCGGGT280000.037.43379
CGGTCTA103600.037.2386676
GTGTCTT509250.036.440245
ACCATGA385850.035.133895
ACGGTCT111750.034.9183435
TGTGTCT537750.034.3329854
GCGCGCT20000.033.780537
TTGTGTC544950.033.7635043
CGTGGGC36100.033.2323464
GAGAAGC583850.032.8548245