Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946474.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 29787870 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 14970 | 0.0 | 14.158456 | 5 |
TATACCG | 10665 | 0.0 | 13.748486 | 5 |
CTATACT | 15440 | 0.0 | 12.966521 | 4 |
TCTATAC | 20245 | 0.0 | 12.883617 | 3 |
TAGACTG | 7150 | 0.0 | 12.028354 | 5 |
GTATAGA | 20805 | 0.0 | 11.982188 | 1 |
ATACCGT | 11990 | 0.0 | 11.758806 | 6 |
GTATAGG | 10410 | 0.0 | 11.657272 | 1 |
GTATTAG | 21470 | 0.0 | 11.523428 | 1 |
CCGTGAG | 6800 | 0.0 | 11.334736 | 9 |
CATACAC | 73250 | 0.0 | 11.272669 | 3 |
ACATGAC | 52590 | 0.0 | 11.2330475 | 8 |
ACACATG | 71165 | 0.0 | 11.008554 | 6 |
TACCGTG | 8125 | 0.0 | 10.931999 | 7 |
TAGACCG | 5960 | 0.0 | 10.723926 | 5 |
CTATACC | 13610 | 0.0 | 10.704459 | 4 |
CATGACA | 54790 | 0.0 | 10.602142 | 9 |
CACATGA | 68510 | 0.0 | 10.598286 | 7 |
TAATACT | 30185 | 0.0 | 10.587145 | 4 |
TATACAG | 18115 | 0.0 | 10.584807 | 5 |