FastQCFastQC Report
Mon 14 Nov 2016
SRR1946531.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946531.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25270020
Sequences flagged as poor quality0
Sequence length36-42
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT25450.013.633161
TGCCGAG26500.010.92534815
CGTGTAG25000.010.68907735
AATGCCG28500.010.46524213
CGAGATC53050.09.764194518
TCGGAAG51150.09.67900923
GAGCGTC23400.09.61245529
AAGAGCG52700.09.526854527
GAGCGGT27150.09.44078329
ATGCCGA30600.09.34755714
GCATTCC37150.09.2920023
GGCATTC37350.09.2887752
CCGAGAT56600.09.2137517
GCTGAAC36500.09.07840911
AGCGTCG24750.09.01806430
GCGTCGT24950.08.79591131
GTGTAGG37450.08.78631836
CCTGCTG37850.08.7517328
GAGATCG58600.08.63095619
GATCGGA61650.08.37026421