FastQCFastQC Report
Mon 14 Nov 2016
SRR1946551.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946551.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21704424
Sequences flagged as poor quality0
Sequence length100-151
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGTTGGTTAGTGTTTTG936490.4314742469092937No Hit
CCAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTCTAACAAGGAAACACT603320.2779709795569788No Hit
CCTAAGTAGTGTTTCCTTGTTAGAAGACACAAAGCCAAAGACTCATATGG478550.22048500342602964No Hit
CCAAAGACTCATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAA448390.2065892188615556No Hit
TGAAAGCTTTGAGAAGCAAGAAGAAGGTTGGTTAGTGTTTTGGAGTCGAA404880.18654261453793936No Hit
CCAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTCTAACAAGGATACACT332090.15300567294483375No Hit
CCAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTTTAACAAGGATACAAT309930.1427957728802202No Hit
CTTTGAGAAGCAAGAAGAAGGTTGGTTAGTGTTTTGGAGTCGAATATGAC283890.13079821883317427No Hit
CCAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTCTAACAAGGATACAAT281390.12964637992696787No Hit
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT232640.10718552125594304Illumina Paired End PCR Primer 2 (98% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGCGC22050.055.4947748
GTCCATA952900.049.7786756
AAAGTCC1052150.049.053063
CCATATG957050.049.0075538
GCGGCCG25000.048.6897855
AGTCCAT982200.048.5285455
CCGCGCT25950.047.4015059
CCAAAGT1224000.046.965671
AAGACAC847050.046.539703145
AAGTCCA1029900.046.4675564
AGCGGCC26750.045.2649734
TCCATAT1075500.044.4020737
CATATGA1082500.044.3106589
CAAAGTC1244350.044.2256132
CTACACC1104800.044.181311
ACCCGCG33750.042.1408657
GTCCGCT39150.040.2557227
AGTCCGC39900.039.9807326
CACCATG1182950.039.821944
ACCATGA1307900.039.064335