FastQCFastQC Report
Mon 14 Nov 2016
SRR1946474.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946474.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29787870
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG149700.014.1584565
TATACCG106650.013.7484865
CTATACT154400.012.9665214
TCTATAC202450.012.8836173
TAGACTG71500.012.0283545
GTATAGA208050.011.9821881
ATACCGT119900.011.7588066
GTATAGG104100.011.6572721
GTATTAG214700.011.5234281
CCGTGAG68000.011.3347369
CATACAC732500.011.2726693
ACATGAC525900.011.23304758
ACACATG711650.011.0085546
TACCGTG81250.010.9319997
TAGACCG59600.010.7239265
CTATACC136100.010.7044594
CATGACA547900.010.6021429
CACATGA685100.010.5982867
TAATACT301850.010.5871454
TATACAG181150.010.5848075