FastQCFastQC Report
Mon 14 Nov 2016
SRR1946477.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946477.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23544000
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG81000.013.4604675
TATACTG127400.013.3535385
CTATACT129550.012.805444
CCGTGCG15150.012.7186869
TCTATAC164150.012.0244613
GTATAGG84200.011.8450231
GTATAGA173100.011.7680091
ACTGTGC39600.011.7490248
GTATTAG159700.011.4592671
CATACAC514750.011.0835673
TAGACTG53500.011.0681235
GTACTAG98650.010.8253241
TAATACT219450.010.6647574
ATACCGT89600.010.594996
ACACATG516150.010.5618326
ACATGAC387600.010.4880358
TACCGTG61450.010.4774567
CTATACC115100.010.2483894
CCGTGAG54600.010.2429579
GTGTATG499450.010.2293941