FastQCFastQC Report
Mon 14 Nov 2016
SRR1946556.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946556.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58791016
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG353500.038.9485634
AGAGCGT197500.035.6537139
GATCGGA424250.032.7981762
CGGAAGA423500.032.588485
ATCGGAA445950.031.0112513
AAGAGCG241400.029.3631218
GAGCGTC132450.026.60060710-11
CGCCGTA128650.026.12955946-47
GAAGAGC533750.025.952387
GGTCGCC130400.025.81713744-45
TATGCCG149500.024.81070348-49
AGCGTCG145250.024.77392810-11
TGCCGTC150850.024.21471450-51
GCACACG141200.023.75611112-13
GCGTCGT153200.023.16794612-13
TGGTCGC144600.022.70898242-43
AGAGCAC301200.022.6299029
CGTATGC170800.022.04857446-47
GCCGTAT161000.020.76093948-49
CACACGT188300.020.72054512-13