Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946556.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 58791016 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 35350 | 0.0 | 38.948563 | 4 |
AGAGCGT | 19750 | 0.0 | 35.653713 | 9 |
GATCGGA | 42425 | 0.0 | 32.798176 | 2 |
CGGAAGA | 42350 | 0.0 | 32.58848 | 5 |
ATCGGAA | 44595 | 0.0 | 31.011251 | 3 |
AAGAGCG | 24140 | 0.0 | 29.363121 | 8 |
GAGCGTC | 13245 | 0.0 | 26.600607 | 10-11 |
CGCCGTA | 12865 | 0.0 | 26.129559 | 46-47 |
GAAGAGC | 53375 | 0.0 | 25.95238 | 7 |
GGTCGCC | 13040 | 0.0 | 25.817137 | 44-45 |
TATGCCG | 14950 | 0.0 | 24.810703 | 48-49 |
AGCGTCG | 14525 | 0.0 | 24.773928 | 10-11 |
TGCCGTC | 15085 | 0.0 | 24.214714 | 50-51 |
GCACACG | 14120 | 0.0 | 23.756111 | 12-13 |
GCGTCGT | 15320 | 0.0 | 23.167946 | 12-13 |
TGGTCGC | 14460 | 0.0 | 22.708982 | 42-43 |
AGAGCAC | 30120 | 0.0 | 22.629902 | 9 |
CGTATGC | 17080 | 0.0 | 22.048574 | 46-47 |
GCCGTAT | 16100 | 0.0 | 20.760939 | 48-49 |
CACACGT | 18830 | 0.0 | 20.720545 | 12-13 |