FastQCFastQC Report
Mon 14 Nov 2016
SRR1946513.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946513.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25768316
Sequences flagged as poor quality0
Sequence length36-64
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT70000.025.0173021
GGCATTC84500.021.0983962
GCTGAAC88150.019.22783911
GCATTCC91600.019.1780173
CCTGCTG90100.019.1263528
CGTGTAG80750.018.6613135
ATTCCTG94550.018.527955
AGTGTAG86200.018.4805448
GAGTGTA83050.018.37423147
GCGTCGT86200.017.6314231
GTCGTGT86450.017.3361933
CGAGATC127050.017.32208618
GTAGGGA90850.017.28008338
TTCCTGC100300.017.275646
TGAACCG96900.017.27208713
TGTAGGG92000.017.00310937
TCGTGTA87700.016.99415434
CCGAGAT132800.016.87533217
GTGTAGA94350.016.201249
CTGAACC105400.016.0363312