Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946481.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43770184 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 21620 | 0.0 | 11.585932 | 5 |
CATACAC | 98390 | 0.0 | 10.856952 | 3 |
CTATACT | 22410 | 0.0 | 10.800025 | 4 |
GTATATA | 65475 | 0.0 | 10.647219 | 1 |
TATACCG | 15085 | 0.0 | 10.623521 | 5 |
ACATGAC | 80095 | 0.0 | 10.14508 | 8 |
ACACATG | 102460 | 0.0 | 10.104656 | 6 |
TATACAG | 20030 | 0.0 | 10.042047 | 5 |
GTATAGG | 16430 | 0.0 | 9.991975 | 1 |
CACATGA | 98280 | 0.0 | 9.927128 | 7 |
CATGACA | 83810 | 0.0 | 9.751715 | 9 |
GTCGCGC | 3025 | 0.0 | 9.632348 | 8 |
TAGACCG | 11355 | 0.0 | 9.56058 | 5 |
GTATAGA | 29150 | 0.0 | 9.553149 | 1 |
TCATACA | 109325 | 0.0 | 9.547474 | 2 |
GACCGTG | 8300 | 0.0 | 9.512455 | 7 |
TCTATAC | 27310 | 0.0 | 9.481768 | 3 |
GTATTAT | 33710 | 0.0 | 9.433033 | 1 |
CTAGTAC | 14770 | 0.0 | 9.41826 | 3 |
GTATTAG | 26185 | 0.0 | 9.26959 | 1 |