FastQCFastQC Report
Mon 14 Nov 2016
SRR1946558.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946558.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55014460
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGAAGTAATCTCGTA663010.12051558808356931TruSeq Adapter, Index 7 (97% over 37bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG387600.041.2284664
AGAGCGT213400.037.7501229
GATCGGA452950.035.4577642
CGGAAGA460450.034.593395
ATCGGAA467850.034.307463
AAGAGCG251250.032.304768
GAAGAGC555300.028.9957087
CGCCGTA135700.028.04766846-47
TGCCGTC162450.027.97077850-51
TATGCCG165600.027.70837848-49
AGAGCAC297000.026.3650029
GAGCGTC153550.026.18665910-11
GGTCGCC144300.026.05232844-45
CGTATGC182800.025.43781946-47
AGCGTCG165450.024.82842810-11
GCACACG158600.024.51054812-13
GCGTCGT167250.024.14170512-13
TGGTCGC152550.023.91471342-43
CACACGT199150.023.78941512-13
ATGCCGT160950.023.35338450-51