Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946552.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33276492 |
Sequences flagged as poor quality | 0 |
Sequence length | 100-151 |
%GC | 35 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTTGAGAAGCAAGAAGAAGGTTGGTTAGTGTTTTGGAGTCGAATATGAC | 42841 | 0.12874253692366372 | No Hit |
CTCGTCTCTCGAGGTTAAATGTTATTACTTGGTAAGATTCCGGACCTCGC | 36707 | 0.1103091034956449 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGG | 20280 | 0.0 | 54.33005 | 8 |
CTCACGG | 10680 | 0.0 | 54.03679 | 2 |
CCTCACG | 12560 | 0.0 | 47.85881 | 1 |
CTCGAGG | 11475 | 0.0 | 45.01044 | 8 |
CACGGTC | 8680 | 0.0 | 44.373608 | 4 |
CACCATG | 28165 | 0.0 | 43.850418 | 4 |
TCACGGT | 14200 | 0.0 | 40.775154 | 3 |
ACGTGAT | 18950 | 0.0 | 39.084396 | 2 |
CTACACC | 35395 | 0.0 | 39.01409 | 1 |
TCGAGGT | 13800 | 0.0 | 37.655933 | 9 |
ATCGGGT | 28000 | 0.0 | 37.4337 | 9 |
CGGTCTA | 10360 | 0.0 | 37.238667 | 6 |
GTGTCTT | 50925 | 0.0 | 36.44024 | 5 |
ACCATGA | 38585 | 0.0 | 35.13389 | 5 |
ACGGTCT | 11175 | 0.0 | 34.918343 | 5 |
TGTGTCT | 53775 | 0.0 | 34.332985 | 4 |
GCGCGCT | 2000 | 0.0 | 33.78053 | 7 |
TTGTGTC | 54495 | 0.0 | 33.763504 | 3 |
CGTGGGC | 3610 | 0.0 | 33.232346 | 4 |
GAGAAGC | 58385 | 0.0 | 32.854824 | 5 |