FastQCFastQC Report
Mon 14 Nov 2016
SRR1946494.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946494.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45600202
Sequences flagged as poor quality0
Sequence length32-64
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT39501.8189894E-1216.36198458
AGAGCGG51800.015.41252158
GCGGTTC42452.2997483E-812.53817958
AAGAGCG67750.011.22289358
AGCGGTT51052.5465852E-1011.16306257
GATCGGA78650.011.11765658
GCGCGTA14150.006260960410.98972952
GGACTCC56000.010.44703436
CCTAACC83500.010.19111936
TCGCTCG32900.0056542039.2443958
GTTAGCC41900.09.17442835
CGATCGG33650.0068050259.03834758
ACCTAAC78350.08.75177735
TCGGAAG61555.4205884E-108.54549955
AGGACAC71100.08.32907135
TAGATCG48901.9656218E-68.267179556
TCGGCAG29100.00127905568.144154
GGCAACC45100.07.960046336
CGGACTC43500.07.88162935
ACTGCCG28556.782571E-47.684914644