FastQCFastQC Report
Mon 14 Nov 2016
SRR1946561.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946561.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91311234
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGAGTCAAATCTCGTA1815930.19887257245915657TruSeq Adapter, Index 5 (97% over 38bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG787450.054.3182644
AGAGCGT437800.049.243899
GATCGGA872350.049.2328762
CGGAAGA906000.047.2803735
ATCGGAA926350.046.455253
AAGAGCG521900.041.8399968
GAAGAGC1085650.039.6398057
AGAGCAC568350.037.0575189
GAGCGTC340250.031.73513210-11
CGCCGTA339200.031.58651246-47
GGTCGCC343300.031.29757544-45
GGAAGAG1400650.031.02086
GCACACG339900.030.81586812-13
AGATCGG1444000.030.226661
AGCGTCG359500.030.06844910-11
TATGCCG319250.030.05356648-49
TGGTCGC363050.029.37143942-43
GCCGTAT375500.028.63274848-49
TGCCGTC331150.028.30003250-51
CGTATGC343700.028.24450346-47