FastQCFastQC Report
Mon 14 Nov 2016
SRR1946527.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946527.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44013944
Sequences flagged as poor quality0
Sequence length36-64
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT60750.017.82067958
AGCGGTT63050.015.90246357
AGAGCGG92550.014.92443358
GCGGTTC51500.013.04781558
TCGGAAG100950.012.94297958
GATCGGA121650.010.20603151
AAGAGCG106750.010.1903456
TAGATCG69256.0936145E-109.1643558
ATCGGAA126600.09.11980357
CGAGCGG39550.0030796278.49510158
ACGAGCG34800.0062179747.857761457
CGGAAGA129050.07.827333556
AGATCGG234550.07.63973558
TGCCGAG46551.829274E-67.088384646
GAAGAGC162500.06.69426956
CAGATCG63301.8989522E-66.487262758
AATGCCG44105.9995655E-56.48555444
CGGTTCA76705.0082235E-86.091364450
CCGGCAT33700.0088413846.020403440
GTTCAGC67601.5618209E-55.803951753