FastQCFastQC Report
Mon 14 Nov 2016
SRR1946509.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946509.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25836078
Sequences flagged as poor quality0
Sequence length36-42
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGTAG18207.401759E-76.561397635
TGCCGAG15700.05.851044715
GTGTAGG32855.379854E-65.534081536
GCGTCGT13458.021016E-85.445605831
TCGGAAG33300.05.418719323
CCGAGAT33200.05.19404317
CCTGCTG21150.05.179698
CGGCATT21600.05.0734391
AATGCCG19000.05.003029313