FastQCFastQC Report
Mon 14 Nov 2016
SRR1946536.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946536.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35489056
Sequences flagged as poor quality0
Sequence length36-64
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATGCCG30500.022.81937844
GAGCGGT37553.6379788E-1219.32552758
TGCCGAG38550.015.10395846
GCCCAGG24308.922325E-814.68517540
AGCGGTT42051.1641532E-1014.36373957
GCGGTTC33351.8038554E-714.22991557
CGCCCAG23258.9485184E-714.03039639
GAATGCC48850.013.56176743
CGCGCGA18403.325801E-412.98198541
CCCCGGT18503.603167E-412.85945140
CCCCGTG25752.7345504E-612.70338840
TCGGAAG71950.012.59197857
CGTGTAG28200.012.444015535
CGAGACC33201.7011189E-712.19496349
GATCGGA94000.012.13132158
AGAGCGG52151.7942511E-811.92724758
CCCCCGT22501.4335556E-411.86206239
ATGCCGA46750.011.71410945
GAGACCG30309.0721005E-611.40910650
GGAATGC56550.011.14152842