Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946503.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27430060 |
Sequences flagged as poor quality | 0 |
Sequence length | 36-42 |
%GC | 38 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTGTAG | 2095 | 0.0 | 10.951992 | 35 |
GTGTAGG | 3600 | 0.0 | 10.010533 | 36 |
GCGTCGT | 1605 | 0.0 | 7.979762 | 31 |
CGTCGTG | 2065 | 0.0 | 7.0618267 | 32 |
CGGCATT | 1880 | 0.0 | 6.886378 | 1 |
GTCGTGT | 2500 | 0.0 | 6.540286 | 33 |
AGCGTCG | 1795 | 0.0 | 6.144601 | 30 |
AATGCCG | 2110 | 0.0 | 6.029688 | 13 |
GAGCGTC | 1780 | 0.0 | 6.015751 | 29 |
TCGGAAG | 3900 | 0.0 | 5.9940486 | 23 |
CCTGCTG | 2475 | 0.0 | 5.939183 | 8 |
CCGAGAT | 3900 | 0.0 | 5.7904754 | 17 |
CGAGATC | 4285 | 0.0 | 5.7895346 | 18 |
TGCCGAG | 1940 | 0.0 | 5.410402 | 15 |
GAGATCG | 4710 | 0.0 | 5.4021397 | 19 |
TCGTGTA | 2965 | 1.0573785E-8 | 5.2977595 | 34 |
GGCATTC | 2825 | 0.0 | 5.260386 | 2 |
ATGCCGA | 2340 | 0.0 | 5.233147 | 14 |