Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946482.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31300138 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 11820 | 0.0 | 13.160551 | 5 |
TATACTG | 15820 | 0.0 | 13.16015 | 5 |
CCGTGAG | 7790 | 0.0 | 12.005662 | 9 |
CTATACT | 16530 | 0.0 | 11.884119 | 4 |
CATACAC | 73560 | 0.0 | 11.800202 | 3 |
GTATAGA | 22805 | 0.0 | 11.613577 | 1 |
ACACATG | 72235 | 0.0 | 11.489644 | 6 |
ACATGAC | 59205 | 0.0 | 11.359268 | 8 |
CTAGTAC | 10325 | 0.0 | 11.28823 | 3 |
GTATATA | 47835 | 0.0 | 11.279902 | 1 |
TAGACTG | 7195 | 0.0 | 11.234694 | 5 |
TATACAG | 16905 | 0.0 | 11.231294 | 5 |
GTGTATG | 72175 | 0.0 | 11.041149 | 1 |
CATGACA | 60665 | 0.0 | 10.992962 | 9 |
TCTATAC | 20955 | 0.0 | 10.9893675 | 3 |
GTACTAG | 13195 | 0.0 | 10.945023 | 1 |
CACATGA | 70155 | 0.0 | 10.905864 | 7 |
CCGTGCC | 2525 | 0.0 | 10.795361 | 9 |
TACCGTG | 8255 | 0.0 | 10.759919 | 7 |
ATACCGT | 11525 | 0.0 | 10.6022 | 6 |