FastQCFastQC Report
Mon 14 Nov 2016
SRR1946545.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946545.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34130462
Sequences flagged as poor quality0
Sequence length36-64
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT53150.012.2080991
CGTGTAG63200.011.75220535
GAGTGTA78750.010.51625447
GTCGTGT70900.010.22109833
TGTAGGG79250.09.75717337
TCGTGTA75000.09.73645934
GGCATTC72800.09.7232292
AGTGTAG91700.09.38161348
ATTCCTG75700.09.1991945
GTGTAGG85150.09.174623536
GTAGGGA81800.09.11903738
GCGTCGT77500.09.07433131
GCTGAAC79350.08.51559311
GCATTCC84150.08.4660973
GTGTAGA97600.08.34459149
AGAGTGT102950.08.31578446
TAGGGAA96650.07.981378639
CGTCGTG89700.07.89046432
CGAGATC109500.07.80762918
CCTGCTG92200.07.7249958