Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946548.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 49228920 |
Sequences flagged as poor quality | 0 |
Sequence length | 30-64 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 6300 | 0.0 | 10.388706 | 1 |
GGCATTC | 10240 | 0.0 | 6.672494 | 2 |
ATTCCTG | 10325 | 0.0 | 6.3873954 | 5 |
CGAGATC | 12090 | 0.0 | 5.914854 | 18 |
GAGACCG | 7825 | 0.0 | 5.856612 | 50 |
TATGCCG | 3890 | 2.5465852E-11 | 5.814869 | 54 |
GCATTCC | 12390 | 0.0 | 5.7520323 | 3 |
CCTGCTG | 11800 | 0.0 | 5.7423043 | 8 |
GCTGAAC | 9615 | 0.0 | 5.7176247 | 11 |
TCGGTGG | 9865 | 4.0017767E-11 | 5.3630304 | 58 |
AATGCCG | 6845 | 0.0 | 5.155942 | 13 |