Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946520.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 42930484 |
Sequences flagged as poor quality | 0 |
Sequence length | 32-64 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CACGCGT | 2350 | 8.871771E-5 | 10.629286 | 55 |
GGACTCC | 5405 | 0.0 | 9.795028 | 36 |
GTTAGCC | 3700 | 0.0 | 9.562006 | 35 |
CGCACCG | 3325 | 1.7133152E-6 | 9.170211 | 50 |
CCTGTGT | 4640 | 1.0429077E-4 | 9.139564 | 58 |
CCGCGCA | 2570 | 1.3455327E-4 | 8.928649 | 45 |
CGCGCAC | 3155 | 1.0966625E-5 | 8.81454 | 48 |
CCGCGTG | 3065 | 4.2947795E-5 | 8.782439 | 52 |
CGCTCAT | 3320 | 1.4093157E-5 | 8.641041 | 51 |
ACGCGCT | 2600 | 2.0654028E-4 | 8.582853 | 41 |
CGGACTC | 4255 | 0.0 | 8.530757 | 35 |
CGCGCTG | 2435 | 9.6031267E-4 | 8.3833885 | 42 |
ACCTAAC | 6830 | 0.0 | 8.341824 | 35 |
CCGTGCA | 2255 | 0.003695532 | 8.3257265 | 45 |
ACCCGCT | 6025 | 2.272832E-5 | 8.318347 | 58 |
CCTAACC | 7505 | 0.0 | 8.308335 | 36 |
TTCGGAC | 4000 | 0.0 | 8.004829 | 33 |
GCCACGC | 3870 | 1.1093118E-5 | 7.983216 | 51 |
GGCAACC | 4925 | 0.0 | 7.763651 | 36 |
CACGCCT | 4645 | 4.5824527E-7 | 7.735617 | 46 |