FastQCFastQC Report
Mon 14 Nov 2016
SRR1946537.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946537.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60710932
Sequences flagged as poor quality0
Sequence length36-64
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGAGCGG165650.010.17385658
GAGCGGT108350.07.77710858
CGGCATT82850.07.50037961
GCGGTTC97450.06.636065558
CTACATG139050.05.919116558
AAGAGCG256450.05.42543158
CCGAGAT177400.05.411512417
GTTCAGC124954.7293724E-115.332381758
TGTAGGG120050.05.32001337
ATTCCTG127200.05.31421765
GGCATTC118950.05.2224752
GCATTCC123000.05.16137743
GCTGAAC125850.05.079199311