FastQCFastQC Report
Mon 14 Nov 2016
SRR1946515.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946515.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60623462
Sequences flagged as poor quality0
Sequence length33-64
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT80750.012.7902711
GCATTCC125300.08.645543
GGCATTC123200.08.6137052
AATGCCG79350.08.539413
CGAGATC149250.08.16300218
ATTCCTG124850.08.0936365
GCTGAAC123400.08.08317811
CCTGCTG125750.07.9303148
TTCCTGC138700.07.53990946
GAGATCG180500.07.01680519
CCGAGAT200500.06.450786617
TCCTGCT164500.06.410887
TGCCGAG103850.06.37601915
ATGCCGA110600.06.28628714
CTGAACC167500.06.15354512
TGAACCG154950.06.12509413
TCGGAAG179300.06.09214923
GAATGCC116900.06.07945612
GTTCAGC122150.05.99661733
GGAATGC130550.05.747260611