FastQCFastQC Report
Mon 14 Nov 2016
SRR1946506.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946506.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70806874
Sequences flagged as poor quality0
Sequence length33-64
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT81850.08.2542631
AATGCCG79000.05.800351613
GCATTCC127800.05.56848573
GGCATTC133650.05.46808152
GGGGGGG1187300.05.363238358
GCTGAAC128050.05.126038611
CCTGCTG133800.05.04842148
ATTCCTG135550.05.0146175