Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946551.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21704424 |
Sequences flagged as poor quality | 0 |
Sequence length | 100-151 |
%GC | 38 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGTTGGTTAGTGTTTTG | 93649 | 0.4314742469092937 | No Hit |
CCAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTCTAACAAGGAAACACT | 60332 | 0.2779709795569788 | No Hit |
CCTAAGTAGTGTTTCCTTGTTAGAAGACACAAAGCCAAAGACTCATATGG | 47855 | 0.22048500342602964 | No Hit |
CCAAAGACTCATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAA | 44839 | 0.2065892188615556 | No Hit |
TGAAAGCTTTGAGAAGCAAGAAGAAGGTTGGTTAGTGTTTTGGAGTCGAA | 40488 | 0.18654261453793936 | No Hit |
CCAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTCTAACAAGGATACACT | 33209 | 0.15300567294483375 | No Hit |
CCAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTTTAACAAGGATACAAT | 30993 | 0.1427957728802202 | No Hit |
CTTTGAGAAGCAAGAAGAAGGTTGGTTAGTGTTTTGGAGTCGAATATGAC | 28389 | 0.13079821883317427 | No Hit |
CCAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTCTAACAAGGATACAAT | 28139 | 0.12964637992696787 | No Hit |
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCGTATGCCGT | 23264 | 0.10718552125594304 | Illumina Paired End PCR Primer 2 (98% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCCGCGC | 2205 | 0.0 | 55.494774 | 8 |
GTCCATA | 95290 | 0.0 | 49.778675 | 6 |
AAAGTCC | 105215 | 0.0 | 49.05306 | 3 |
CCATATG | 95705 | 0.0 | 49.007553 | 8 |
GCGGCCG | 2500 | 0.0 | 48.689785 | 5 |
AGTCCAT | 98220 | 0.0 | 48.528545 | 5 |
CCGCGCT | 2595 | 0.0 | 47.401505 | 9 |
CCAAAGT | 122400 | 0.0 | 46.96567 | 1 |
AAGACAC | 84705 | 0.0 | 46.539703 | 145 |
AAGTCCA | 102990 | 0.0 | 46.467556 | 4 |
AGCGGCC | 2675 | 0.0 | 45.264973 | 4 |
TCCATAT | 107550 | 0.0 | 44.402073 | 7 |
CATATGA | 108250 | 0.0 | 44.310658 | 9 |
CAAAGTC | 124435 | 0.0 | 44.225613 | 2 |
CTACACC | 110480 | 0.0 | 44.18131 | 1 |
ACCCGCG | 3375 | 0.0 | 42.140865 | 7 |
GTCCGCT | 3915 | 0.0 | 40.255722 | 7 |
AGTCCGC | 3990 | 0.0 | 39.980732 | 6 |
CACCATG | 118295 | 0.0 | 39.82194 | 4 |
ACCATGA | 130790 | 0.0 | 39.06433 | 5 |