Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946531.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25270020 |
Sequences flagged as poor quality | 0 |
Sequence length | 36-42 |
%GC | 38 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 2545 | 0.0 | 13.63316 | 1 |
TGCCGAG | 2650 | 0.0 | 10.925348 | 15 |
CGTGTAG | 2500 | 0.0 | 10.689077 | 35 |
AATGCCG | 2850 | 0.0 | 10.465242 | 13 |
CGAGATC | 5305 | 0.0 | 9.7641945 | 18 |
TCGGAAG | 5115 | 0.0 | 9.679009 | 23 |
GAGCGTC | 2340 | 0.0 | 9.612455 | 29 |
AAGAGCG | 5270 | 0.0 | 9.5268545 | 27 |
GAGCGGT | 2715 | 0.0 | 9.440783 | 29 |
ATGCCGA | 3060 | 0.0 | 9.347557 | 14 |
GCATTCC | 3715 | 0.0 | 9.292002 | 3 |
GGCATTC | 3735 | 0.0 | 9.288775 | 2 |
CCGAGAT | 5660 | 0.0 | 9.21375 | 17 |
GCTGAAC | 3650 | 0.0 | 9.078409 | 11 |
AGCGTCG | 2475 | 0.0 | 9.018064 | 30 |
GCGTCGT | 2495 | 0.0 | 8.795911 | 31 |
GTGTAGG | 3745 | 0.0 | 8.786318 | 36 |
CCTGCTG | 3785 | 0.0 | 8.751732 | 8 |
GAGATCG | 5860 | 0.0 | 8.630956 | 19 |
GATCGGA | 6165 | 0.0 | 8.370264 | 21 |