FastQCFastQC Report
Mon 14 Nov 2016
SRR1946519.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946519.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28034188
Sequences flagged as poor quality0
Sequence length36-42
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACGGC20300.015.45817326
GTCCCGA36850.013.4376544
TGTCCCG36600.013.2581923
GCTGTCC39600.012.8551711
GCGCGGC7200.012.354235
TTTAAGT325600.012.18955536
TGTACGG27950.012.00742725
GCGGTTT328400.011.93295332
TCTCGCG28300.011.85892716
TCGCGCT27300.011.61720618
CACGGGG20000.011.57168135
ACACTAC337800.011.548234
GTTTAAG316600.011.47893535
GGCGCGC10700.011.44803111
CTACTTA356550.011.2854517
TACTTAG354750.011.2339418
ACTTAGG356300.011.2179989
CTTAGGC351450.011.20094410
CACTACT342750.011.1936325
CTCGCGC29850.010.96211617