FastQCFastQC Report
Mon 14 Nov 2016
SRR1946568.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946568.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112530716
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCTGC891950.040.442321
CGCTGCG939250.038.4578552
CTGCGGC928350.037.790894
TGCGGCC586200.032.8715445
GCTGCGG1121150.032.5289763
TGCGGCA458150.016.4440165
GCGGCCC569200.012.9216346
CGGCCCT318350.011.6624887
TGCGGTG507700.011.38275676-77
CTGCGGT462450.011.07867476-77
TGCGGCT472500.09.8074745
TGCTGCG670700.09.40474974-75
GCGGCCA595750.08.7879816
TGCGGCG572700.08.6577965
GCGGTGA605350.08.36646778-79
GGCCCTA142100.08.1690558
CGGTGAT673900.08.05597278-79
GCGGCCT458850.07.46663246
GCGGCAC506550.07.2366956
GTGATGG751800.06.686406680-81