FastQCFastQC Report
Mon 14 Nov 2016
SRR1946492.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946492.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23296486
Sequences flagged as poor quality0
Sequence length36-64
%GC43

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT44550.016.0713021
GGCATTC64550.011.7981142
GCTGAAC64500.011.48948311
ATTCCTG66800.010.972365
GCATTCC70750.010.9261533
CCTGCTG69600.010.5263518
CGAGATC91500.010.31906118
CGTGTAG47850.09.82626535
TGAACCG81650.09.46165513
TTCCTGC78600.09.3966896
CCGAGAT107950.09.1970517
CTGAACC85000.08.81951312
GTCGTGT55700.08.54553533
GAGCGTC58000.08.34020529
GAGATCG116150.08.25220819
TCCTGCT93150.08.1737877
CTGCTGA98150.08.1338259
GCGTCGT59000.08.11450631
GTAGATC63850.08.03237851
AATGCCG56050.07.912533813