Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946542.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41930070 |
Sequences flagged as poor quality | 0 |
Sequence length | 32-64 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGAGCGG | 5150 | 0.0 | 14.119289 | 58 |
GAGCGGT | 4095 | 3.6379788E-11 | 13.810891 | 58 |
AAGAGCG | 6935 | 5.456968E-12 | 11.650138 | 58 |
AGCGGTT | 5320 | 1.8555511E-8 | 11.390091 | 58 |
GGACTCC | 5555 | 0.0 | 10.757807 | 36 |
CGGACTC | 4230 | 0.0 | 9.827764 | 35 |
GCGGTTC | 4685 | 4.2917236E-8 | 8.963151 | 54 |
TCGGACT | 3915 | 0.0 | 8.868713 | 34 |
GTTAGCC | 3460 | 0.0 | 8.52668 | 35 |
TTCGGAC | 4005 | 0.0 | 8.518299 | 33 |
CGTTCGG | 2740 | 2.2754098E-4 | 8.506347 | 45 |
TCGGAAG | 7095 | 1.1312295E-8 | 8.409892 | 57 |
CCTAACC | 7055 | 0.0 | 8.389862 | 36 |
TATTCGG | 3980 | 0.0 | 7.481501 | 31 |
ACCTAAC | 6735 | 0.0 | 7.3671165 | 35 |
GTTCAGC | 5540 | 0.0037852963 | 7.2918515 | 58 |
CAGAGCG | 3820 | 0.0015439643 | 7.1129656 | 54 |
ATTCGGA | 5530 | 0.0 | 7.0997744 | 32 |
GGACACA | 5550 | 0.0 | 7.075785 | 36 |
CGGACGA | 3555 | 0.006054823 | 6.9483514 | 54 |