FastQCFastQC Report
Mon 14 Nov 2016
SRR1946563.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946563.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences149875130
Sequences flagged as poor quality0
Sequence length100
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTTAGCATCTCGTA15993241.067104328783568TruSeq Adapter, Index 7 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGAGCGT3141150.053.9657679
TCGGAAG6474950.052.8174174
CGGAAGA6642200.051.373595
AAGAGCG3336850.050.996758
ATCGGAA6776750.050.6616943
GATCGGA6873850.049.936412
GAAGAGC6897050.049.409797
AGAGCAC3509000.048.6486369
AGATCGG7358850.046.7677351
GGAAGAG7589950.045.066726
AAGAGCA4090250.041.9469388
TATGCCG2112950.041.33365648-49
CGCCGTA2076150.040.8657546-47
TGCCGTC2154350.040.3945550-51
CGTATGC2181200.040.1074846-47
CCGTATC2150050.039.4769948-49
GGTCGCC2121200.039.3242544-45
GCCGTAT2132800.039.28054448-49
TGGTCGC2133500.039.1018442-43
ATGCCGT2126950.038.81519350-51