Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946519.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28034188 |
Sequences flagged as poor quality | 0 |
Sequence length | 36-42 |
%GC | 39 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACGGC | 2030 | 0.0 | 15.458173 | 26 |
GTCCCGA | 3685 | 0.0 | 13.437654 | 4 |
TGTCCCG | 3660 | 0.0 | 13.258192 | 3 |
GCTGTCC | 3960 | 0.0 | 12.855171 | 1 |
GCGCGGC | 720 | 0.0 | 12.35423 | 5 |
TTTAAGT | 32560 | 0.0 | 12.189555 | 36 |
TGTACGG | 2795 | 0.0 | 12.007427 | 25 |
GCGGTTT | 32840 | 0.0 | 11.932953 | 32 |
TCTCGCG | 2830 | 0.0 | 11.858927 | 16 |
TCGCGCT | 2730 | 0.0 | 11.617206 | 18 |
CACGGGG | 2000 | 0.0 | 11.571681 | 35 |
ACACTAC | 33780 | 0.0 | 11.54823 | 4 |
GTTTAAG | 31660 | 0.0 | 11.478935 | 35 |
GGCGCGC | 1070 | 0.0 | 11.448031 | 11 |
CTACTTA | 35655 | 0.0 | 11.285451 | 7 |
TACTTAG | 35475 | 0.0 | 11.233941 | 8 |
ACTTAGG | 35630 | 0.0 | 11.217998 | 9 |
CTTAGGC | 35145 | 0.0 | 11.200944 | 10 |
CACTACT | 34275 | 0.0 | 11.193632 | 5 |
CTCGCGC | 2985 | 0.0 | 10.962116 | 17 |