FastQCFastQC Report
Mon 14 Nov 2016
SRR1946510.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946510.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45303618
Sequences flagged as poor quality0
Sequence length36-42
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1888620.4168806120517792No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT47300.07.3437571
AATGCCG42100.05.163087413