FastQCFastQC Report
Mon 14 Nov 2016
SRR1946533.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946533.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56374274
Sequences flagged as poor quality0
Sequence length36-64
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGGGGG287800.015.14004758
CGGGGGG84950.012.42979958
CCGGGGG62700.011.08501258
TGTAGGG107200.011.05893537
GTAGGGA107400.010.98562438
TAGGGAA135200.010.42619939
TGGGGGG98000.010.36544458
CGTGTAG68150.010.35578335
GAGTGTA112750.010.03671247
GCGTCGT70950.09.34513531
AGGGGGG94200.09.22280158
CGGCATT73250.09.2130661
GTCGTGT81900.08.34298433
CGTCGTG87050.08.27029932
GAGCGTC68300.07.86535829
GTGGGGG92900.07.625363358
AGCGTCG68900.07.620551630
TCGTGTA97350.07.469489634
TTGGGGG127900.07.41973258
AGAGTGT148850.07.292595446