Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946569.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 125651164 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGCTGC | 102925 | 0.0 | 42.436478 | 1 |
CGCTGCG | 111180 | 0.0 | 39.287132 | 2 |
CTGCGGC | 108640 | 0.0 | 38.51473 | 4 |
TGCGGCC | 69845 | 0.0 | 33.01263 | 5 |
GCTGCGG | 133965 | 0.0 | 32.798786 | 3 |
TGCGGCA | 50795 | 0.0 | 17.200708 | 5 |
GCGGCCC | 71665 | 0.0 | 12.210836 | 6 |
CTGCGGT | 52865 | 0.0 | 12.092051 | 76-77 |
TGCGGTG | 60620 | 0.0 | 11.712081 | 76-77 |
CGGCCCT | 39275 | 0.0 | 11.463639 | 7 |
TGCGGCT | 54560 | 0.0 | 10.233636 | 5 |
TGCTGCG | 80445 | 0.0 | 9.713807 | 74-75 |
GCGGCCA | 71130 | 0.0 | 8.820664 | 6 |
TGCGGCG | 67550 | 0.0 | 8.606612 | 5 |
CGGTGAT | 80540 | 0.0 | 8.485644 | 78-79 |
GCGGTGA | 76600 | 0.0 | 8.293147 | 78-79 |
GGCCCTA | 15990 | 0.0 | 7.671235 | 8 |
GCGGCCT | 55880 | 0.0 | 7.6702814 | 6 |
GCGGCAC | 62310 | 0.0 | 7.135202 | 6 |
GTGATGG | 88365 | 0.0 | 7.114197 | 80-81 |