Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946562.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 134665702 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGACAGTGCATCTCGTA | 180162 | 0.13378462171459218 | TruSeq Adapter, Index 6 (97% over 37bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 40250 | 0.0 | 25.227531 | 46-47 |
TATGCCG | 41040 | 0.0 | 25.175165 | 48-49 |
GGTCGCC | 40825 | 0.0 | 24.240786 | 44-45 |
TGCCGTC | 43115 | 0.0 | 23.86209 | 50-51 |
TCGGAAG | 175015 | 0.0 | 23.084188 | 4 |
ATGCCGT | 42315 | 0.0 | 22.763443 | 50-51 |
AGAGCGT | 88555 | 0.0 | 22.667547 | 9 |
TGGTCGC | 44545 | 0.0 | 22.397123 | 42-43 |
CGTATGC | 46835 | 0.0 | 22.026749 | 46-47 |
GCCGTCT | 44555 | 0.0 | 21.728022 | 52-53 |
CGACAGT | 44335 | 0.0 | 21.552324 | 34-35 |
GCCGTAT | 47900 | 0.0 | 21.07413 | 48-49 |
CCGTATC | 48335 | 0.0 | 20.98658 | 48-49 |
GTATGCC | 47920 | 0.0 | 20.221739 | 48-49 |
CGGAAGA | 200075 | 0.0 | 20.193996 | 5 |
GATCGGA | 204730 | 0.0 | 19.831587 | 2 |
ATCGGAA | 207420 | 0.0 | 19.708708 | 3 |
ACGACAG | 53030 | 0.0 | 19.686026 | 32-33 |
AGTCACG | 52855 | 0.0 | 19.557194 | 28-29 |
AAGAGCG | 104150 | 0.0 | 19.467403 | 8 |