Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946557.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 51509014 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 24235 | 0.0 | 22.73627 | 4 |
AGAGCGT | 13815 | 0.0 | 19.925695 | 9 |
CGGAAGA | 28820 | 0.0 | 19.26583 | 5 |
GATCGGA | 30015 | 0.0 | 18.874989 | 2 |
ATCGGAA | 30445 | 0.0 | 18.438261 | 3 |
CGCCGTA | 7515 | 0.0 | 17.767776 | 46-47 |
TATGCCG | 9210 | 0.0 | 17.074564 | 48-49 |
GAGCGTC | 8125 | 0.0 | 16.853617 | 10-11 |
TGCCGTC | 9930 | 0.0 | 16.00227 | 50-51 |
AAGAGCG | 17530 | 0.0 | 15.782542 | 8 |
GCACACG | 8895 | 0.0 | 15.342877 | 12-13 |
GGTCGCC | 8510 | 0.0 | 15.139054 | 44-45 |
AGCGTCG | 9920 | 0.0 | 14.419612 | 10-11 |
CGTATGC | 11390 | 0.0 | 14.385427 | 46-47 |
GAAGAGC | 39925 | 0.0 | 14.188574 | 7 |
CACACGT | 12300 | 0.0 | 14.151086 | 12-13 |
ATGCCGT | 9175 | 0.0 | 13.527328 | 50-51 |
GCGTCGT | 10375 | 0.0 | 13.335333 | 12-13 |
TGGTCGC | 9650 | 0.0 | 13.080589 | 42-43 |
GCCGTAT | 10325 | 0.0 | 13.045107 | 48-49 |