FastQCFastQC Report
Mon 14 Nov 2016
SRR1946511.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946511.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57939124
Sequences flagged as poor quality0
Sequence length35-64
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT94800.012.9992831
GGCATTC128950.010.0533692
GCTGAAC123750.09.86101811
GCATTCC131800.09.8010893
CCTGCTG119100.09.743868
CGAGATC177500.08.93441918
ATTCCTG137050.08.7380095
CCGAGAT194900.08.63154517
TTCCTGC140250.08.3562116
AATGCCG109350.08.06369244
TGAACCG156200.07.95948513
CGTGTAG83700.07.928594635
TCGGAAG337900.07.81945158
TGTAGGG118550.07.690518437
CTGAACC164800.07.4186412
TCCTGCT162600.07.33498767
AACCGAG149750.07.090120315
GTGTAGG128650.07.01619336
GATCGGA428850.07.009380358
GTAGGGA124500.06.87112438