Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946511.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 57939124 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-64 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 9480 | 0.0 | 12.999283 | 1 |
GGCATTC | 12895 | 0.0 | 10.053369 | 2 |
GCTGAAC | 12375 | 0.0 | 9.861018 | 11 |
GCATTCC | 13180 | 0.0 | 9.801089 | 3 |
CCTGCTG | 11910 | 0.0 | 9.74386 | 8 |
CGAGATC | 17750 | 0.0 | 8.934419 | 18 |
ATTCCTG | 13705 | 0.0 | 8.738009 | 5 |
CCGAGAT | 19490 | 0.0 | 8.631545 | 17 |
TTCCTGC | 14025 | 0.0 | 8.356211 | 6 |
AATGCCG | 10935 | 0.0 | 8.063692 | 44 |
TGAACCG | 15620 | 0.0 | 7.959485 | 13 |
CGTGTAG | 8370 | 0.0 | 7.9285946 | 35 |
TCGGAAG | 33790 | 0.0 | 7.819451 | 58 |
TGTAGGG | 11855 | 0.0 | 7.6905184 | 37 |
CTGAACC | 16480 | 0.0 | 7.41864 | 12 |
TCCTGCT | 16260 | 0.0 | 7.3349876 | 7 |
AACCGAG | 14975 | 0.0 | 7.0901203 | 15 |
GTGTAGG | 12865 | 0.0 | 7.016193 | 36 |
GATCGGA | 42885 | 0.0 | 7.0093803 | 58 |
GTAGGGA | 12450 | 0.0 | 6.871124 | 38 |