FastQCFastQC Report
Mon 14 Nov 2016
SRR1946562.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946562.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences134665702
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGACAGTGCATCTCGTA1801620.13378462171459218TruSeq Adapter, Index 6 (97% over 37bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA402500.025.22753146-47
TATGCCG410400.025.17516548-49
GGTCGCC408250.024.24078644-45
TGCCGTC431150.023.8620950-51
TCGGAAG1750150.023.0841884
ATGCCGT423150.022.76344350-51
AGAGCGT885550.022.6675479
TGGTCGC445450.022.39712342-43
CGTATGC468350.022.02674946-47
GCCGTCT445550.021.72802252-53
CGACAGT443350.021.55232434-35
GCCGTAT479000.021.0741348-49
CCGTATC483350.020.9865848-49
GTATGCC479200.020.22173948-49
CGGAAGA2000750.020.1939965
GATCGGA2047300.019.8315872
ATCGGAA2074200.019.7087083
ACGACAG530300.019.68602632-33
AGTCACG528550.019.55719428-29
AAGAGCG1041500.019.4674038