Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946536.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35489056 |
Sequences flagged as poor quality | 0 |
Sequence length | 36-64 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AATGCCG | 3050 | 0.0 | 22.819378 | 44 |
GAGCGGT | 3755 | 3.6379788E-12 | 19.325527 | 58 |
TGCCGAG | 3855 | 0.0 | 15.103958 | 46 |
GCCCAGG | 2430 | 8.922325E-8 | 14.685175 | 40 |
AGCGGTT | 4205 | 1.1641532E-10 | 14.363739 | 57 |
GCGGTTC | 3335 | 1.8038554E-7 | 14.229915 | 57 |
CGCCCAG | 2325 | 8.9485184E-7 | 14.030396 | 39 |
GAATGCC | 4885 | 0.0 | 13.561767 | 43 |
CGCGCGA | 1840 | 3.325801E-4 | 12.981985 | 41 |
CCCCGGT | 1850 | 3.603167E-4 | 12.859451 | 40 |
CCCCGTG | 2575 | 2.7345504E-6 | 12.703388 | 40 |
TCGGAAG | 7195 | 0.0 | 12.591978 | 57 |
CGTGTAG | 2820 | 0.0 | 12.4440155 | 35 |
CGAGACC | 3320 | 1.7011189E-7 | 12.194963 | 49 |
GATCGGA | 9400 | 0.0 | 12.131321 | 58 |
AGAGCGG | 5215 | 1.7942511E-8 | 11.927247 | 58 |
CCCCCGT | 2250 | 1.4335556E-4 | 11.862062 | 39 |
ATGCCGA | 4675 | 0.0 | 11.714109 | 45 |
GAGACCG | 3030 | 9.0721005E-6 | 11.409106 | 50 |
GGAATGC | 5655 | 0.0 | 11.141528 | 42 |