FastQCFastQC Report
Mon 14 Nov 2016
SRR1946559.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946559.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60527928
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG359900.037.8782424
AGAGCGT205250.032.499439
CGGAAGA438450.031.0708055
GATCGGA447250.030.9962312
ATCGGAA465000.029.8828953
AAGAGCG242200.027.908758
TGCCGTC156400.026.31704150-51
TATGCCG161400.025.89498948-49
GAAGAGC550500.025.0435927
GGTCGCC126350.024.91485844-45
CGCCGTA129650.024.55071646-47
CGTATGC172150.024.4708546-47
GAGCGTC135650.024.36292810-11
AGAGCAC304300.022.9859989
AGCGTCG148600.022.95107310-11
GCACACG156900.022.12729812-13
CACACGT200400.021.89556112-13
GCGTCGT152700.021.67448812-13
TGGTCGC143000.021.63198542-43
ATGCCGT158450.020.87322250-51