Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946544.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 56978496 |
Sequences flagged as poor quality | 0 |
Sequence length | 32-64 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGAGCGG | 11525 | 0.0 | 13.798249 | 58 |
CGTGTAG | 7565 | 0.0 | 11.631293 | 35 |
GCGTCGT | 7930 | 0.0 | 10.376652 | 31 |
GAGTGTA | 10705 | 0.0 | 10.233538 | 47 |
CGGCATT | 6570 | 0.0 | 9.837033 | 1 |
GTCGTGT | 8795 | 0.0 | 9.825861 | 33 |
AGTGTAG | 11610 | 0.0 | 9.558021 | 48 |
CGTCGTG | 9320 | 0.0 | 9.12192 | 32 |
GTAGGGA | 10485 | 0.0 | 8.983864 | 38 |
TGTAGGG | 10580 | 0.0 | 8.977826 | 37 |
TCGTGTA | 10015 | 0.0 | 8.898094 | 34 |
GTGTAGG | 11010 | 0.0 | 8.519158 | 36 |
GTGTAGA | 14355 | 0.0 | 7.477532 | 49 |
TAGGGAA | 13240 | 0.0 | 7.3556027 | 39 |
AGAGTGT | 14955 | 0.0 | 7.337203 | 46 |
GGCATTC | 9415 | 0.0 | 7.0510483 | 2 |
CCTGCTG | 9425 | 0.0 | 6.874141 | 8 |
CCGAGAT | 13565 | 0.0 | 6.86345 | 17 |
AATGCCG | 5995 | 0.0 | 6.8170004 | 13 |
GAGCGTC | 8135 | 0.0 | 6.6638165 | 29 |