Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946566.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 77721168 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 36 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 33995 | 0.0 | 24.49379 | 4 |
GATCGGA | 43005 | 0.0 | 19.395918 | 2 |
AGAGCGT | 19430 | 0.0 | 18.562033 | 9 |
CGGAAGA | 45065 | 0.0 | 18.557415 | 5 |
ATCGGAA | 47985 | 0.0 | 17.706072 | 3 |
GCACACG | 13420 | 0.0 | 17.024641 | 12-13 |
GGTCGCC | 10000 | 0.0 | 16.707499 | 44-45 |
AAGAGCG | 24980 | 0.0 | 15.058072 | 8 |
AGAGCAC | 31135 | 0.0 | 14.871856 | 9 |
CGCCGTA | 10850 | 0.0 | 14.615488 | 46-47 |
GAAGAGC | 58740 | 0.0 | 14.550125 | 7 |
GAGCGTC | 12490 | 0.0 | 14.456822 | 10-11 |
AGCGTCG | 12440 | 0.0 | 14.250678 | 10-11 |
GCGTCGT | 13125 | 0.0 | 13.381966 | 12-13 |
TATGCCG | 12465 | 0.0 | 13.042023 | 48-49 |
TGCCGTC | 12150 | 0.0 | 12.803675 | 50-51 |
AGTCACG | 15535 | 0.0 | 12.361181 | 28-29 |
TGGTCGC | 13540 | 0.0 | 12.011768 | 42-43 |
CGTATGC | 14150 | 0.0 | 11.887646 | 46-47 |
CACACGT | 20765 | 0.0 | 11.816857 | 12-13 |