Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946515.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 60623462 |
Sequences flagged as poor quality | 0 |
Sequence length | 33-64 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 8075 | 0.0 | 12.790271 | 1 |
GCATTCC | 12530 | 0.0 | 8.64554 | 3 |
GGCATTC | 12320 | 0.0 | 8.613705 | 2 |
AATGCCG | 7935 | 0.0 | 8.5394 | 13 |
CGAGATC | 14925 | 0.0 | 8.163002 | 18 |
ATTCCTG | 12485 | 0.0 | 8.093636 | 5 |
GCTGAAC | 12340 | 0.0 | 8.083178 | 11 |
CCTGCTG | 12575 | 0.0 | 7.930314 | 8 |
TTCCTGC | 13870 | 0.0 | 7.5399094 | 6 |
GAGATCG | 18050 | 0.0 | 7.016805 | 19 |
CCGAGAT | 20050 | 0.0 | 6.4507866 | 17 |
TCCTGCT | 16450 | 0.0 | 6.41088 | 7 |
TGCCGAG | 10385 | 0.0 | 6.376019 | 15 |
ATGCCGA | 11060 | 0.0 | 6.286287 | 14 |
CTGAACC | 16750 | 0.0 | 6.153545 | 12 |
TGAACCG | 15495 | 0.0 | 6.125094 | 13 |
TCGGAAG | 17930 | 0.0 | 6.092149 | 23 |
GAATGCC | 11690 | 0.0 | 6.079456 | 12 |
GTTCAGC | 12215 | 0.0 | 5.9966173 | 3 |
GGAATGC | 13055 | 0.0 | 5.7472606 | 11 |