FastQCFastQC Report
Mon 14 Nov 2016
SRR1946508.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946508.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27018020
Sequences flagged as poor quality0
Sequence length36-42
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGTAG19400.013.84669735
GTGTAGG37950.011.18553736
GCGTCGT16750.010.75687831
CGTCGTG20850.09.84726232
GTCGTGT25200.08.23649633
CGGCATT22000.07.70623451
GAGCGTC18850.07.45058229
AGCGTCG19000.07.39315830
TCGGAAG41400.07.17401123
TGCCGAG20050.06.843711415
AATGCCG20100.06.82654913
TCGTGTA30050.06.653082434
CGAGATC43450.06.501550718
GAGATCG48650.06.43702419
CCGAGAT43650.06.25016117
GGCATTC29900.06.10057972
CCTGCTG27350.06.0786238
AAGAGCG47800.05.876198327
GCATTCC32550.05.80202253
GATCGGA52050.05.7371221