Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946491.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 70018808 |
Sequences flagged as poor quality | 0 |
Sequence length | 36-64 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGTGG | 10580 | 0.0 | 22.30935 | 58 |
CTCGGTG | 9490 | 0.0 | 14.504267 | 57 |
TCGGGGG | 7455 | 0.0 | 11.759808 | 58 |
GAGACCG | 9050 | 0.0 | 8.252607 | 50 |
CGAGACC | 9185 | 0.0 | 7.9364057 | 49 |
CGGCATT | 7930 | 0.0 | 7.848747 | 1 |
AATGCCG | 8935 | 0.0 | 7.6410666 | 44 |
TGTAGGG | 12935 | 0.0 | 7.3882933 | 37 |
TCGGAAG | 22945 | 0.0 | 7.347786 | 58 |
GATCGGA | 27285 | 0.0 | 7.1676793 | 58 |
GATCTCG | 12940 | 0.0 | 6.7225614 | 54 |
GTAGGGG | 6905 | 0.0 | 6.687854 | 38 |
CTCGGGG | 6590 | 7.708877E-9 | 6.672245 | 57 |
CGAGATC | 14290 | 0.0 | 6.480632 | 18 |
GTAGATC | 11785 | 0.0 | 6.3814206 | 51 |
TAGATCG | 12760 | 7.878043E-9 | 6.3421297 | 58 |
AGCGTCG | 11700 | 4.620233E-10 | 6.3403225 | 58 |
TGCCGAG | 11220 | 0.0 | 6.0407534 | 46 |
CGGAAGA | 27340 | 0.0 | 5.796607 | 58 |
GACCGAT | 9970 | 0.0 | 5.7949176 | 52 |