FastQCFastQC Report
Mon 14 Nov 2016
SRR1946557.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946557.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51509014
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG242350.022.736274
AGAGCGT138150.019.9256959
CGGAAGA288200.019.265835
GATCGGA300150.018.8749892
ATCGGAA304450.018.4382613
CGCCGTA75150.017.76777646-47
TATGCCG92100.017.07456448-49
GAGCGTC81250.016.85361710-11
TGCCGTC99300.016.0022750-51
AAGAGCG175300.015.7825428
GCACACG88950.015.34287712-13
GGTCGCC85100.015.13905444-45
AGCGTCG99200.014.41961210-11
CGTATGC113900.014.38542746-47
GAAGAGC399250.014.1885747
CACACGT123000.014.15108612-13
ATGCCGT91750.013.52732850-51
GCGTCGT103750.013.33533312-13
TGGTCGC96500.013.08058942-43
GCCGTAT103250.013.04510748-49