Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946554.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18406038 |
Sequences flagged as poor quality | 0 |
Sequence length | 147 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACACTCT | 15770 | 0.0 | 13.009174 | 1 |
CTTTCCC | 17085 | 0.0 | 11.847098 | 6 |
CACTCTT | 19525 | 0.0 | 11.408318 | 2 |
TTCCCTA | 13685 | 0.0 | 11.235777 | 8 |
TCCCTAC | 11105 | 0.0 | 10.924852 | 9 |
CTCGGCA | 4925 | 0.0 | 9.7339945 | 1 |
CGGCATT | 5075 | 0.0 | 9.445697 | 3 |
TCGGCAT | 6070 | 0.0 | 8.245086 | 2 |
TTTCCCT | 25320 | 0.0 | 7.882635 | 7 |
TCTTTCC | 30705 | 0.0 | 7.6463757 | 5 |
TAGTCGA | 8310 | 0.0 | 7.2111797 | 1 |
TAGACTC | 10490 | 0.0 | 7.191123 | 1 |
TAACCGC | 6435 | 0.0 | 7.011644 | 1 |
ACTCTTT | 37010 | 0.0 | 6.89526 | 3 |
TAAAGCC | 14285 | 0.0 | 6.859982 | 1 |
TAGAAGG | 12645 | 0.0 | 6.411615 | 1 |
TGTTGCG | 7970 | 0.0 | 6.3688726 | 1 |
TGACTCC | 13675 | 0.0 | 6.2895694 | 1 |
TAACACT | 16305 | 0.0 | 6.1830626 | 1 |
GCATTCC | 8460 | 0.0 | 6.083772 | 5 |