Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946478.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18425714 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 9195 | 0.0 | 12.368781 | 5 |
GTATATA | 26235 | 0.0 | 11.996714 | 1 |
TATACCG | 6515 | 0.0 | 11.758081 | 5 |
CTATACT | 9690 | 0.0 | 11.68844 | 4 |
GTATAGG | 7350 | 0.0 | 11.585333 | 1 |
CATACAC | 49905 | 0.0 | 11.470082 | 3 |
GTATAGA | 12485 | 0.0 | 11.153738 | 1 |
GTGTATG | 47270 | 0.0 | 11.067167 | 1 |
ACATGAC | 39920 | 0.0 | 11.066553 | 8 |
CTAGGCT | 5030 | 0.0 | 10.931536 | 4 |
ACACATG | 48535 | 0.0 | 10.912699 | 6 |
TATACTA | 16235 | 0.0 | 10.826364 | 5 |
CACATGA | 46130 | 0.0 | 10.80933 | 7 |
TCTATAC | 11240 | 0.0 | 10.6619625 | 3 |
CATGACA | 41175 | 0.0 | 10.638109 | 9 |
GTATTAA | 13890 | 0.0 | 10.567435 | 1 |
TAGGCTG | 5950 | 0.0 | 10.426062 | 5 |
TCATACA | 54295 | 0.0 | 10.291657 | 2 |
GTATTAG | 11335 | 0.0 | 10.168615 | 1 |
GATTGAG | 44635 | 0.0 | 10.128995 | 7 |