Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946568.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 112530716 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGCTGC | 89195 | 0.0 | 40.44232 | 1 |
CGCTGCG | 93925 | 0.0 | 38.457855 | 2 |
CTGCGGC | 92835 | 0.0 | 37.79089 | 4 |
TGCGGCC | 58620 | 0.0 | 32.871544 | 5 |
GCTGCGG | 112115 | 0.0 | 32.528976 | 3 |
TGCGGCA | 45815 | 0.0 | 16.444016 | 5 |
GCGGCCC | 56920 | 0.0 | 12.921634 | 6 |
CGGCCCT | 31835 | 0.0 | 11.662488 | 7 |
TGCGGTG | 50770 | 0.0 | 11.382756 | 76-77 |
CTGCGGT | 46245 | 0.0 | 11.078674 | 76-77 |
TGCGGCT | 47250 | 0.0 | 9.807474 | 5 |
TGCTGCG | 67070 | 0.0 | 9.404749 | 74-75 |
GCGGCCA | 59575 | 0.0 | 8.787981 | 6 |
TGCGGCG | 57270 | 0.0 | 8.657796 | 5 |
GCGGTGA | 60535 | 0.0 | 8.366467 | 78-79 |
GGCCCTA | 14210 | 0.0 | 8.169055 | 8 |
CGGTGAT | 67390 | 0.0 | 8.055972 | 78-79 |
GCGGCCT | 45885 | 0.0 | 7.4666324 | 6 |
GCGGCAC | 50655 | 0.0 | 7.236695 | 6 |
GTGATGG | 75180 | 0.0 | 6.6864066 | 80-81 |