FastQCFastQC Report
Mon 14 Nov 2016
SRR1946482.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946482.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31300138
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG118200.013.1605515
TATACTG158200.013.160155
CCGTGAG77900.012.0056629
CTATACT165300.011.8841194
CATACAC735600.011.8002023
GTATAGA228050.011.6135771
ACACATG722350.011.4896446
ACATGAC592050.011.3592688
CTAGTAC103250.011.288233
GTATATA478350.011.2799021
TAGACTG71950.011.2346945
TATACAG169050.011.2312945
GTGTATG721750.011.0411491
CATGACA606650.010.9929629
TCTATAC209550.010.98936753
GTACTAG131950.010.9450231
CACATGA701550.010.9058647
CCGTGCC25250.010.7953619
TACCGTG82550.010.7599197
ATACCGT115250.010.60226