FastQCFastQC Report
Mon 14 Nov 2016
SRR1946540.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946540.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40226132
Sequences flagged as poor quality0
Sequence length36-64
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGAGCGG75500.046.26981458
GAGCGGT49350.043.25912558
GCGGTTC42950.041.66631757
AGCGGTT54200.036.28707555
AAGAGCG96000.028.36725457
TCGGAAG88600.025.46740757
GTTCAGC53953.8576945E-717.98666858
CGGAAGA119000.017.05588754
ATCGGAA110950.016.69142756
GATCGGA116850.016.373551
GAAGAGC152600.015.90200356
CGGTTCA57309.094947E-1214.97656953
ACGAGCG31250.003856031514.93900657
TAGATCG60806.002665E-1112.768167558
CAGAGCG40601.7891658E-512.4334653
TCGGACG30200.003921573511.70062653
CGGCAGA35900.00110892911.24899153
CAGCAGG69550.001182220111.16182158
CAGATCG57951.7709099E-611.01968856
GGAAGAG210500.010.99208855