Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946470.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26018518 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 8960 | 0.0 | 12.693129 | 5 |
CTATACT | 13860 | 0.0 | 12.410211 | 4 |
TCTATAC | 16605 | 0.0 | 12.311521 | 3 |
ACATGAC | 59105 | 0.0 | 11.720435 | 8 |
CATGACA | 59560 | 0.0 | 11.410157 | 9 |
CATACAC | 76685 | 0.0 | 11.392795 | 3 |
TATACTG | 13475 | 0.0 | 11.230224 | 5 |
GTATAGG | 9910 | 0.0 | 11.200833 | 1 |
TACCGTG | 7440 | 0.0 | 11.18064 | 7 |
ACACATG | 78355 | 0.0 | 11.156103 | 6 |
GAGCGCG | 1860 | 0.0 | 11.117473 | 7 |
CACATGA | 76480 | 0.0 | 10.901144 | 7 |
GTATATA | 36065 | 0.0 | 10.876574 | 1 |
GTATAGA | 18395 | 0.0 | 10.841217 | 1 |
ATACCGT | 7960 | 0.0 | 10.745452 | 6 |
TATACAG | 11280 | 0.0 | 10.582442 | 5 |
CCTAGAC | 5840 | 0.0 | 10.380976 | 3 |
TCATACA | 85390 | 0.0 | 10.275417 | 2 |
GTATTAG | 16050 | 0.0 | 10.227333 | 1 |
ATCATAC | 84565 | 0.0 | 9.939073 | 1 |