FastQCFastQC Report
Mon 14 Nov 2016
SRR1946522.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946522.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26635134
Sequences flagged as poor quality0
Sequence length36-42
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGGC6550.07.76986555
ACTTAGG175900.06.7678759
CTTAGGC176850.06.683562310
ACACTAC186850.06.628234
TACTTAG183750.06.61737788
CACTACT190900.06.558195
CTACTTA192800.06.49147567
TTAGGCT192350.06.30367911
GTCCCGA26250.06.26917274
GCGGTTT234550.06.252924432
GTCGCCC13750.06.16742430
TAGGCTT198950.06.145680412
TGTCCCG26700.06.1018163
ATACCCC29150.06.0547183
GCTGTCC29100.05.83451131
ACTACTT220100.05.80188376
GTACGGC12900.05.78457926
GATCGGG103750.05.72094223
GGTTGCG191450.05.68723928
TTGCGGT233900.05.612382430