Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946518.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 60033018 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-64 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGAGCG | 29145 | 0.0 | 8.058853 | 58 |
TCGGAAG | 38960 | 0.0 | 7.846783 | 58 |
AGATCGG | 69390 | 0.0 | 7.0249233 | 58 |
AGAGCGG | 19790 | 0.0 | 6.829029 | 58 |
GATCGGA | 48725 | 0.0 | 6.446364 | 58 |
AGCGTCG | 11205 | 0.0 | 6.404948 | 58 |
TAGATCG | 22355 | 0.0 | 6.128856 | 58 |
ATCGGAA | 43125 | 0.0 | 5.9032483 | 57 |
CGGAAGA | 42380 | 0.0 | 5.7150464 | 55 |
GAGCGTC | 11060 | 0.0 | 5.354609 | 57 |
GTGTAGG | 12130 | 0.0 | 5.2249827 | 58 |
CGTGTAG | 8130 | 0.0 | 5.108523 | 57 |
TGTAGGG | 11145 | 0.0 | 5.101367 | 58 |