Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946480.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24490204 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 12975 | 0.0 | 12.713132 | 5 |
TATACCG | 7680 | 0.0 | 12.48308 | 5 |
CTATACT | 13440 | 0.0 | 12.3781805 | 4 |
CATACAC | 67810 | 0.0 | 11.823283 | 3 |
GCCGTGC | 2715 | 0.0 | 11.597513 | 8 |
ACATGAC | 62210 | 0.0 | 11.324039 | 8 |
GTATATA | 35400 | 0.0 | 11.321046 | 1 |
ACACATG | 72920 | 0.0 | 11.149442 | 6 |
CATGACA | 63215 | 0.0 | 10.9807005 | 9 |
TCTATAC | 15560 | 0.0 | 10.9031105 | 3 |
CACATGA | 70120 | 0.0 | 10.87753 | 7 |
GTATAGA | 15875 | 0.0 | 10.8743305 | 1 |
GTGTATG | 65850 | 0.0 | 10.543403 | 1 |
CCGTGCG | 1525 | 0.0 | 10.478008 | 9 |
TCATACA | 75205 | 0.0 | 10.385753 | 2 |
ATCATAC | 72545 | 0.0 | 10.329005 | 1 |
TATACAG | 11735 | 0.0 | 10.211979 | 5 |
ATACCGT | 7235 | 0.0 | 9.938173 | 6 |
TATACTA | 22850 | 0.0 | 9.810361 | 5 |
TACCGTG | 5635 | 0.0 | 9.757659 | 7 |