Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946486.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 66294678 |
Sequences flagged as poor quality | 0 |
Sequence length | 36-64 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 9255 | 0.0 | 9.16175 | 1 |
AATGCCG | 8395 | 0.0 | 6.721214 | 13 |
CGAGATC | 17365 | 0.0 | 6.3315167 | 18 |
GGCATTC | 13405 | 0.0 | 6.3043337 | 2 |
CCGAGAT | 21120 | 0.0 | 5.9936647 | 17 |
TCGGAAG | 17845 | 0.0 | 5.695194 | 23 |
GCTGAAC | 13005 | 0.0 | 5.6498904 | 11 |
GAGATCG | 20630 | 0.0 | 5.645417 | 19 |
ATTCCTG | 13925 | 0.0 | 5.631699 | 5 |
TGCCGAG | 10935 | 0.0 | 5.5504665 | 15 |
CGTGTAG | 7730 | 0.0 | 5.517754 | 35 |
CCTGCTG | 13345 | 0.0 | 5.438388 | 8 |
GAGCGTC | 8850 | 0.0 | 5.3297415 | 29 |
GCATTCC | 15725 | 0.0 | 5.302583 | 3 |
AGCGTCG | 9120 | 0.0 | 5.199572 | 30 |
TGTAGGG | 10845 | 0.0 | 5.099661 | 37 |
ATCGGAA | 21670 | 0.0 | 5.013819 | 22 |
AAGAGCG | 20040 | 0.0 | 5.0000186 | 27 |