FastQCFastQC Report
Mon 14 Nov 2016
SRR1946554.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946554.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18406038
Sequences flagged as poor quality0
Sequence length147
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACTCT157700.013.0091741
CTTTCCC170850.011.8470986
CACTCTT195250.011.4083182
TTCCCTA136850.011.2357778
TCCCTAC111050.010.9248529
CTCGGCA49250.09.73399451
CGGCATT50750.09.4456973
TCGGCAT60700.08.2450862
TTTCCCT253200.07.8826357
TCTTTCC307050.07.64637575
TAGTCGA83100.07.21117971
TAGACTC104900.07.1911231
TAACCGC64350.07.0116441
ACTCTTT370100.06.895263
TAAAGCC142850.06.8599821
TAGAAGG126450.06.4116151
TGTTGCG79700.06.36887261
TGACTCC136750.06.28956941
TAACACT163050.06.18306261
GCATTCC84600.06.0837725