FastQCFastQC Report
Mon 14 Nov 2016
SRR1946488.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946488.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23676652
Sequences flagged as poor quality0
Sequence length36-42
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGTAGG27200.0041884185.887815536
GAAACGG35353.840032E-45.662962436
TTTTTTT906100.05.479092636
TTGTTTT300950.05.055362736