FastQCFastQC Report
Mon 14 Nov 2016
SRR1946473.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946473.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29686138
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG149300.014.47987655
TAGACTG67250.013.4875125
GTATTAG227100.012.1786191
ACAGTGC61600.011.9782218
CTATACT154900.011.7415744
TATACAG201450.011.6645925
TCTATAC189200.011.6498213
TATACCG111600.011.5807135
TACACTG93750.011.5298425
GTATAGA194800.011.2762781
TAATACT328100.011.2155964
CATACAC525600.011.0964483
GTATAGG106200.010.9398231
TAGTACT158550.010.878444
TAGACAG78650.010.7557475
ACTGTGC54500.010.5205098
GTATTAT347800.010.4406021
ATACTGT197350.010.4304686
ACACATG516600.010.4164076
ACATGAC409100.010.4081168