Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946558.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 55014460 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGAAGTAATCTCGTA | 66301 | 0.12051558808356931 | TruSeq Adapter, Index 7 (97% over 37bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 38760 | 0.0 | 41.228466 | 4 |
AGAGCGT | 21340 | 0.0 | 37.750122 | 9 |
GATCGGA | 45295 | 0.0 | 35.457764 | 2 |
CGGAAGA | 46045 | 0.0 | 34.59339 | 5 |
ATCGGAA | 46785 | 0.0 | 34.30746 | 3 |
AAGAGCG | 25125 | 0.0 | 32.30476 | 8 |
GAAGAGC | 55530 | 0.0 | 28.995708 | 7 |
CGCCGTA | 13570 | 0.0 | 28.047668 | 46-47 |
TGCCGTC | 16245 | 0.0 | 27.970778 | 50-51 |
TATGCCG | 16560 | 0.0 | 27.708378 | 48-49 |
AGAGCAC | 29700 | 0.0 | 26.365002 | 9 |
GAGCGTC | 15355 | 0.0 | 26.186659 | 10-11 |
GGTCGCC | 14430 | 0.0 | 26.052328 | 44-45 |
CGTATGC | 18280 | 0.0 | 25.437819 | 46-47 |
AGCGTCG | 16545 | 0.0 | 24.828428 | 10-11 |
GCACACG | 15860 | 0.0 | 24.510548 | 12-13 |
GCGTCGT | 16725 | 0.0 | 24.141705 | 12-13 |
TGGTCGC | 15255 | 0.0 | 23.914713 | 42-43 |
CACACGT | 19915 | 0.0 | 23.789415 | 12-13 |
ATGCCGT | 16095 | 0.0 | 23.353384 | 50-51 |