Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946541.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24160982 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-41 |
%GC | 39 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 2405 | 0.0 | 12.4152 | 1 |
CGAGATC | 4890 | 0.0 | 9.820343 | 18 |
AATGCCG | 2725 | 0.0 | 9.691965 | 13 |
GGCATTC | 3335 | 0.0 | 9.441128 | 2 |
CCGAGAT | 5405 | 0.0 | 9.347139 | 17 |
TGCCGAG | 2845 | 0.0 | 9.339586 | 15 |
TCGGAAG | 5010 | 0.0 | 9.258885 | 23 |
CCTGCTG | 2970 | 0.0 | 8.892957 | 8 |
GAGATCG | 5335 | 0.0 | 8.847946 | 19 |
GCATTCC | 3685 | 0.0 | 8.544307 | 3 |
GCTGAAC | 3475 | 0.0 | 8.35599 | 11 |
GAATGCC | 3465 | 0.0 | 8.1903 | 12 |
GAGCGTC | 1855 | 0.0 | 8.176203 | 29 |
ATGCCGA | 3295 | 0.0 | 8.063957 | 14 |
AAGAGCG | 5610 | 0.0 | 7.79216 | 27 |
ATCGGAA | 6210 | 0.0 | 7.549163 | 22 |
AGAGCGG | 3905 | 0.0 | 7.498404 | 28 |
GCCGAGA | 3890 | 0.0 | 7.3366256 | 16 |
GAGCGGT | 2940 | 0.0 | 7.289602 | 29 |
ATTCCTG | 4000 | 0.0 | 7.256606 | 5 |