Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946508.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27018020 |
Sequences flagged as poor quality | 0 |
Sequence length | 36-42 |
%GC | 38 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTGTAG | 1940 | 0.0 | 13.846697 | 35 |
GTGTAGG | 3795 | 0.0 | 11.185537 | 36 |
GCGTCGT | 1675 | 0.0 | 10.756878 | 31 |
CGTCGTG | 2085 | 0.0 | 9.847262 | 32 |
GTCGTGT | 2520 | 0.0 | 8.236496 | 33 |
CGGCATT | 2200 | 0.0 | 7.7062345 | 1 |
GAGCGTC | 1885 | 0.0 | 7.450582 | 29 |
AGCGTCG | 1900 | 0.0 | 7.393158 | 30 |
TCGGAAG | 4140 | 0.0 | 7.174011 | 23 |
TGCCGAG | 2005 | 0.0 | 6.8437114 | 15 |
AATGCCG | 2010 | 0.0 | 6.826549 | 13 |
TCGTGTA | 3005 | 0.0 | 6.6530824 | 34 |
CGAGATC | 4345 | 0.0 | 6.5015507 | 18 |
GAGATCG | 4865 | 0.0 | 6.437024 | 19 |
CCGAGAT | 4365 | 0.0 | 6.250161 | 17 |
GGCATTC | 2990 | 0.0 | 6.1005797 | 2 |
CCTGCTG | 2735 | 0.0 | 6.078623 | 8 |
AAGAGCG | 4780 | 0.0 | 5.8761983 | 27 |
GCATTCC | 3255 | 0.0 | 5.8020225 | 3 |
GATCGGA | 5205 | 0.0 | 5.73712 | 21 |