FastQCFastQC Report
Mon 14 Nov 2016
SRR1946541.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946541.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24160982
Sequences flagged as poor quality0
Sequence length35-41
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT24050.012.41521
CGAGATC48900.09.82034318
AATGCCG27250.09.69196513
GGCATTC33350.09.4411282
CCGAGAT54050.09.34713917
TGCCGAG28450.09.33958615
TCGGAAG50100.09.25888523
CCTGCTG29700.08.8929578
GAGATCG53350.08.84794619
GCATTCC36850.08.5443073
GCTGAAC34750.08.3559911
GAATGCC34650.08.190312
GAGCGTC18550.08.17620329
ATGCCGA32950.08.06395714
AAGAGCG56100.07.7921627
ATCGGAA62100.07.54916322
AGAGCGG39050.07.49840428
GCCGAGA38900.07.336625616
GAGCGGT29400.07.28960229
ATTCCTG40000.07.2566065