FastQCFastQC Report
Mon 14 Nov 2016
SRR1946567.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946567.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences140629918
Sequences flagged as poor quality0
Sequence length100
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCTGC1270750.043.781661
CGCTGCG1426050.039.047692
CTGCGGC1396150.038.2617034
TGCGGCC884650.033.1615335
GCTGCGG1722100.032.521013
TGCGGCA637300.017.8760285
CGGCCCT495800.012.2658087
GCGGCCC970550.011.936236
CTGCGGT646300.011.91260776-77
TGCGGTG724150.011.89439976-77
TGCGGCT660900.010.3611075
TGCTGCG974500.09.7598874-75
GGCCCTA188800.09.7578138
TGCGGCG856550.08.7626315
GCGGCCA931700.08.7365496
CGGTGAT940000.08.67317578-79
GCGGTGA931650.08.17827978-79
GATGGCG1068850.07.26687782-83
ATGGCGA880300.07.226861584-85
GTGATGG1014800.07.22304780-81