Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946512.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22628150 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-41 |
%GC | 39 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 2890 | 0.0 | 14.7304945 | 1 |
AATGCCG | 3325 | 0.0 | 12.954223 | 13 |
GAGCGTC | 2360 | 0.0 | 12.712308 | 29 |
TCGGAAG | 6145 | 0.0 | 12.250258 | 23 |
TGCCGAG | 3385 | 0.0 | 12.135376 | 15 |
GGCATTC | 3660 | 0.0 | 12.030388 | 2 |
GCATTCC | 3785 | 0.0 | 11.809516 | 3 |
CCGAGAT | 6305 | 0.0 | 11.721418 | 17 |
CGAGATC | 6255 | 0.0 | 11.708907 | 18 |
GAGCGGT | 3445 | 0.0 | 11.676304 | 29 |
CCTGCTG | 3625 | 0.0 | 11.593097 | 8 |
AAGAGCG | 6475 | 0.0 | 11.546274 | 27 |
AGAGCGG | 3975 | 0.0 | 11.299168 | 28 |
GAGATCG | 6690 | 0.0 | 11.052542 | 19 |
ATGCCGA | 3830 | 0.0 | 11.03293 | 14 |
GATCGGA | 7015 | 0.0 | 10.854688 | 21 |
GCTGAAC | 3995 | 0.0 | 10.81903 | 11 |
ATCGGAA | 7125 | 0.0 | 10.616134 | 22 |
CGGAAGA | 7520 | 0.0 | 10.121108 | 24 |
GAATGCC | 4355 | 0.0 | 10.044293 | 12 |