FastQCFastQC Report
Mon 14 Nov 2016
SRR1946491.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946491.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70018808
Sequences flagged as poor quality0
Sequence length36-64
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGTGG105800.022.3093558
CTCGGTG94900.014.50426757
TCGGGGG74550.011.75980858
GAGACCG90500.08.25260750
CGAGACC91850.07.936405749
CGGCATT79300.07.8487471
AATGCCG89350.07.641066644
TGTAGGG129350.07.388293337
TCGGAAG229450.07.34778658
GATCGGA272850.07.167679358
GATCTCG129400.06.722561454
GTAGGGG69050.06.68785438
CTCGGGG65907.708877E-96.67224557
CGAGATC142900.06.48063218
GTAGATC117850.06.381420651
TAGATCG127607.878043E-96.342129758
AGCGTCG117004.620233E-106.340322558
TGCCGAG112200.06.040753446
CGGAAGA273400.05.79660758
GACCGAT99700.05.794917652