Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946529.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 53589896 |
Sequences flagged as poor quality | 0 |
Sequence length | 32-64 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTGTAG | 9315 | 0.0 | 22.504465 | 35 |
GCGTCGT | 9750 | 0.0 | 20.966887 | 31 |
GAGTGTA | 11720 | 0.0 | 20.511879 | 47 |
GTAGGGA | 11090 | 0.0 | 19.944084 | 38 |
AGTGTAG | 12580 | 0.0 | 19.78878 | 48 |
GTCGTGT | 10455 | 0.0 | 19.687576 | 33 |
TGTAGGG | 11165 | 0.0 | 19.681362 | 37 |
CGGCATT | 9250 | 0.0 | 18.256102 | 1 |
GTGTAGG | 11915 | 0.0 | 18.245373 | 36 |
TCGTGTA | 11630 | 0.0 | 18.243004 | 34 |
CGTCGTG | 11375 | 0.0 | 18.040363 | 32 |
GTGTAGA | 13960 | 0.0 | 17.306477 | 49 |
GTAGATC | 10565 | 0.0 | 17.186808 | 51 |
TAGGGAA | 14380 | 0.0 | 15.535042 | 39 |
AGAGTGT | 15355 | 0.0 | 15.435082 | 46 |
GCATTCC | 11775 | 0.0 | 14.453898 | 3 |
GGCATTC | 11805 | 0.0 | 14.383018 | 2 |
CCTGCTG | 11965 | 0.0 | 13.870236 | 8 |
GCTGAAC | 12025 | 0.0 | 13.800488 | 11 |
TGTAGAT | 17110 | 0.0 | 13.719778 | 50 |