Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946561.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 91311234 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGAGTCAAATCTCGTA | 181593 | 0.19887257245915657 | TruSeq Adapter, Index 5 (97% over 38bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 78745 | 0.0 | 54.318264 | 4 |
AGAGCGT | 43780 | 0.0 | 49.24389 | 9 |
GATCGGA | 87235 | 0.0 | 49.232876 | 2 |
CGGAAGA | 90600 | 0.0 | 47.280373 | 5 |
ATCGGAA | 92635 | 0.0 | 46.45525 | 3 |
AAGAGCG | 52190 | 0.0 | 41.839996 | 8 |
GAAGAGC | 108565 | 0.0 | 39.639805 | 7 |
AGAGCAC | 56835 | 0.0 | 37.057518 | 9 |
GAGCGTC | 34025 | 0.0 | 31.735132 | 10-11 |
CGCCGTA | 33920 | 0.0 | 31.586512 | 46-47 |
GGTCGCC | 34330 | 0.0 | 31.297575 | 44-45 |
GGAAGAG | 140065 | 0.0 | 31.0208 | 6 |
GCACACG | 33990 | 0.0 | 30.815868 | 12-13 |
AGATCGG | 144400 | 0.0 | 30.22666 | 1 |
AGCGTCG | 35950 | 0.0 | 30.068449 | 10-11 |
TATGCCG | 31925 | 0.0 | 30.053566 | 48-49 |
TGGTCGC | 36305 | 0.0 | 29.371439 | 42-43 |
GCCGTAT | 37550 | 0.0 | 28.632748 | 48-49 |
TGCCGTC | 33115 | 0.0 | 28.300032 | 50-51 |
CGTATGC | 34370 | 0.0 | 28.244503 | 46-47 |