Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946564.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 144236224 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 134265 | 0.0 | 21.964132 | 4 |
GGTCGCC | 35230 | 0.0 | 20.741133 | 44-45 |
TATGCCG | 36630 | 0.0 | 20.705347 | 48-49 |
CGCCGTA | 35790 | 0.0 | 20.695715 | 46-47 |
AGAGCGT | 72460 | 0.0 | 20.309927 | 9 |
TGCCGTC | 38005 | 0.0 | 20.05681 | 50-51 |
ATGCCGT | 37345 | 0.0 | 18.90702 | 50-51 |
TGGTCGC | 38925 | 0.0 | 18.877703 | 42-43 |
CGGAAGA | 162180 | 0.0 | 18.27803 | 5 |
CGTATGC | 42400 | 0.0 | 18.056814 | 46-47 |
GCCGTCT | 39530 | 0.0 | 17.991615 | 52-53 |
GATCGGA | 167470 | 0.0 | 17.8211 | 2 |
ATCGGAA | 168360 | 0.0 | 17.774866 | 3 |
AGTCACG | 45475 | 0.0 | 16.64253 | 28-29 |
AAGAGCG | 90420 | 0.0 | 16.504457 | 8 |
CCGTATC | 46380 | 0.0 | 16.286793 | 48-49 |
GCCGTAT | 45945 | 0.0 | 16.159645 | 48-49 |
GTATGCC | 44450 | 0.0 | 16.105661 | 48-49 |
GAAGAGC | 189875 | 0.0 | 15.789174 | 7 |
AGAGCAC | 99670 | 0.0 | 15.067018 | 9 |