FastQCFastQC Report
Mon 14 Nov 2016
SRR1946481.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946481.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43770184
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG216200.011.5859325
CATACAC983900.010.8569523
CTATACT224100.010.8000254
GTATATA654750.010.6472191
TATACCG150850.010.6235215
ACATGAC800950.010.145088
ACACATG1024600.010.1046566
TATACAG200300.010.0420475
GTATAGG164300.09.9919751
CACATGA982800.09.9271287
CATGACA838100.09.7517159
GTCGCGC30250.09.6323488
TAGACCG113550.09.560585
GTATAGA291500.09.5531491
TCATACA1093250.09.5474742
GACCGTG83000.09.5124557
TCTATAC273100.09.4817683
GTATTAT337100.09.4330331
CTAGTAC147700.09.418263
GTATTAG261850.09.269591