Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946533.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 56374274 |
Sequences flagged as poor quality | 0 |
Sequence length | 36-64 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGGGGG | 28780 | 0.0 | 15.140047 | 58 |
CGGGGGG | 8495 | 0.0 | 12.429799 | 58 |
CCGGGGG | 6270 | 0.0 | 11.085012 | 58 |
TGTAGGG | 10720 | 0.0 | 11.058935 | 37 |
GTAGGGA | 10740 | 0.0 | 10.985624 | 38 |
TAGGGAA | 13520 | 0.0 | 10.426199 | 39 |
TGGGGGG | 9800 | 0.0 | 10.365444 | 58 |
CGTGTAG | 6815 | 0.0 | 10.355783 | 35 |
GAGTGTA | 11275 | 0.0 | 10.036712 | 47 |
GCGTCGT | 7095 | 0.0 | 9.345135 | 31 |
AGGGGGG | 9420 | 0.0 | 9.222801 | 58 |
CGGCATT | 7325 | 0.0 | 9.213066 | 1 |
GTCGTGT | 8190 | 0.0 | 8.342984 | 33 |
CGTCGTG | 8705 | 0.0 | 8.270299 | 32 |
GAGCGTC | 6830 | 0.0 | 7.865358 | 29 |
GTGGGGG | 9290 | 0.0 | 7.6253633 | 58 |
AGCGTCG | 6890 | 0.0 | 7.6205516 | 30 |
TCGTGTA | 9735 | 0.0 | 7.4694896 | 34 |
TTGGGGG | 12790 | 0.0 | 7.419732 | 58 |
AGAGTGT | 14885 | 0.0 | 7.2925954 | 46 |