FastQCFastQC Report
Mon 14 Nov 2016
SRR1946516.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946516.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27288162
Sequences flagged as poor quality0
Sequence length36-42
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTGCGG16300.0063578337.83838936
GCGGTTT291700.07.39772632
TTTAAGT349500.06.45835436
TGCGGTT311350.05.944898631
GTTTAAG334700.05.525188435
ACACTAC234550.05.24695834
CTACTTA240650.05.1793097
CACTACT235650.05.1424285
TACTTAG233800.05.0428