FastQCFastQC Report
Mon 14 Nov 2016
SRR1946471.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946471.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28882400
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG150700.012.2249385
GTATAGA207400.011.9775421
GTACTAG136200.011.7793081
CCGTGCG15850.011.564239
TATACCG93600.011.4480865
TCTATAC190950.011.3709353
CTAGTAC103250.011.1519263
CTATACT155500.011.0617694
TACCGTG76850.011.0078687
CCGTGAG85850.010.8394259
GTATATA443350.010.8029791
CATACAC748100.010.6169783
GAGCGCG19650.010.523617
ACACATG738800.010.4580036
GTATTAG180000.010.4290061
GTGTATG713950.010.4053541
GACCGTG52500.010.3842067
GTATAGG105750.010.3661631
TAGACCG81250.010.3538895
ACATGAC593300.010.3057738