FastQCFastQC Report
Mon 14 Nov 2016
SRR1946542.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946542.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41930070
Sequences flagged as poor quality0
Sequence length32-64
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGAGCGG51500.014.11928958
GAGCGGT40953.6379788E-1113.81089158
AAGAGCG69355.456968E-1211.65013858
AGCGGTT53201.8555511E-811.39009158
GGACTCC55550.010.75780736
CGGACTC42300.09.82776435
GCGGTTC46854.2917236E-88.96315154
TCGGACT39150.08.86871334
GTTAGCC34600.08.5266835
TTCGGAC40050.08.51829933
CGTTCGG27402.2754098E-48.50634745
TCGGAAG70951.1312295E-88.40989257
CCTAACC70550.08.38986236
TATTCGG39800.07.48150131
ACCTAAC67350.07.367116535
GTTCAGC55400.00378529637.291851558
CAGAGCG38200.00154396437.112965654
ATTCGGA55300.07.099774432
GGACACA55500.07.07578536
CGGACGA35550.0060548236.948351454