FastQCFastQC Report
Mon 14 Nov 2016
SRR1946548.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946548.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49228920
Sequences flagged as poor quality0
Sequence length30-64
%GC43

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT63000.010.3887061
GGCATTC102400.06.6724942
ATTCCTG103250.06.38739545
CGAGATC120900.05.91485418
GAGACCG78250.05.85661250
TATGCCG38902.5465852E-115.81486954
GCATTCC123900.05.75203233
CCTGCTG118000.05.74230438
GCTGAAC96150.05.717624711
TCGGTGG98654.0017767E-115.363030458
AATGCCG68450.05.15594213