Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946563.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 149875130 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTTAGCATCTCGTA | 1599324 | 1.067104328783568 | TruSeq Adapter, Index 7 (97% over 36bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGAGCGT | 314115 | 0.0 | 53.965767 | 9 |
TCGGAAG | 647495 | 0.0 | 52.817417 | 4 |
CGGAAGA | 664220 | 0.0 | 51.37359 | 5 |
AAGAGCG | 333685 | 0.0 | 50.99675 | 8 |
ATCGGAA | 677675 | 0.0 | 50.661694 | 3 |
GATCGGA | 687385 | 0.0 | 49.93641 | 2 |
GAAGAGC | 689705 | 0.0 | 49.40979 | 7 |
AGAGCAC | 350900 | 0.0 | 48.648636 | 9 |
AGATCGG | 735885 | 0.0 | 46.767735 | 1 |
GGAAGAG | 758995 | 0.0 | 45.06672 | 6 |
AAGAGCA | 409025 | 0.0 | 41.946938 | 8 |
TATGCCG | 211295 | 0.0 | 41.333656 | 48-49 |
CGCCGTA | 207615 | 0.0 | 40.86575 | 46-47 |
TGCCGTC | 215435 | 0.0 | 40.39455 | 50-51 |
CGTATGC | 218120 | 0.0 | 40.10748 | 46-47 |
CCGTATC | 215005 | 0.0 | 39.47699 | 48-49 |
GGTCGCC | 212120 | 0.0 | 39.32425 | 44-45 |
GCCGTAT | 213280 | 0.0 | 39.280544 | 48-49 |
TGGTCGC | 213350 | 0.0 | 39.10184 | 42-43 |
ATGCCGT | 212695 | 0.0 | 38.815193 | 50-51 |