FastQCFastQC Report
Mon 14 Nov 2016
SRR1946475.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946475.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32931678
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG161350.013.3982775
TATACCG130850.012.7860495
CTATACT177400.012.0536314
GTATAGA238150.011.8119881
TCTATAC223550.011.6675163
TATACAG190900.011.57049755
CCGTGAG73400.010.7568859
GTATAGG129400.010.687731
GTACTAG141200.010.6274341
GTGTATG671700.010.6168641
CATACAC703400.010.6165073
TACCGTG97050.010.6049837
TAATACT325050.010.4242594
GTATATA468150.010.3898171
GTATTAG247900.010.3227351
ATACCGT140650.010.1911116
ACCGTGA109600.010.162568
ACATGAC557250.010.0023038
TACACAG101250.09.979385
ATACTGT200750.09.9727626