FastQCFastQC Report
Mon 14 Nov 2016
SRR1946518.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946518.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60033018
Sequences flagged as poor quality0
Sequence length35-64
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGAGCG291450.08.05885358
TCGGAAG389600.07.84678358
AGATCGG693900.07.024923358
AGAGCGG197900.06.82902958
GATCGGA487250.06.44636458
AGCGTCG112050.06.40494858
TAGATCG223550.06.12885658
ATCGGAA431250.05.903248357
CGGAAGA423800.05.715046455
GAGCGTC110600.05.35460957
GTGTAGG121300.05.224982758
CGTGTAG81300.05.10852357
TGTAGGG111450.05.10136758