Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946534.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41265308 |
Sequences flagged as poor quality | 0 |
Sequence length | 36-64 |
%GC | 40 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGAGCGG | 8285 | 0.0 | 32.37046 | 58 |
GAGCGGT | 5210 | 0.0 | 27.024832 | 58 |
AGCGGTT | 5510 | 0.0 | 19.200024 | 57 |
AAGAGCG | 10175 | 0.0 | 18.71507 | 57 |
TCGGAAG | 9760 | 0.0 | 16.072916 | 55 |
GCGGTTC | 3985 | 3.6379788E-12 | 14.417908 | 51 |
ATCGGAA | 12235 | 0.0 | 13.206094 | 50 |
GATCGGA | 12250 | 0.0 | 12.92326 | 49 |
AGATCGG | 21920 | 0.0 | 12.234912 | 58 |
TAGATCG | 6690 | 1.8189894E-12 | 12.026425 | 58 |
CGGAAGA | 12905 | 0.0 | 12.015817 | 52 |
GAAGAGC | 16090 | 0.0 | 11.943307 | 55 |
CAGATCG | 6145 | 5.1812094E-7 | 11.190381 | 57 |
GTTCAGC | 5270 | 7.8631274E-8 | 10.32493 | 54 |
CAGCAGG | 6550 | 1.2975508E-4 | 10.236232 | 58 |
CCGCCCT | 2860 | 0.0027411594 | 8.605235 | 41 |
CACGCAC | 3890 | 0.0034363787 | 8.392655 | 54 |
GGAAGAG | 22530 | 0.0 | 8.050359 | 54 |
CGGTTCA | 6080 | 7.688515E-6 | 7.915005 | 53 |
GGTTCAG | 7105 | 1.2485323E-5 | 7.256946 | 53 |