FastQCFastQC Report
Mon 14 Nov 2016
SRR1946512.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946512.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22628150
Sequences flagged as poor quality0
Sequence length35-41
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT28900.014.73049451
AATGCCG33250.012.95422313
GAGCGTC23600.012.71230829
TCGGAAG61450.012.25025823
TGCCGAG33850.012.13537615
GGCATTC36600.012.0303882
GCATTCC37850.011.8095163
CCGAGAT63050.011.72141817
CGAGATC62550.011.70890718
GAGCGGT34450.011.67630429
CCTGCTG36250.011.5930978
AAGAGCG64750.011.54627427
AGAGCGG39750.011.29916828
GAGATCG66900.011.05254219
ATGCCGA38300.011.0329314
GATCGGA70150.010.85468821
GCTGAAC39950.010.8190311
ATCGGAA71250.010.61613422
CGGAAGA75200.010.12110824
GAATGCC43550.010.04429312