Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946565.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 91183628 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 36 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 36365 | 0.0 | 23.20752 | 4 |
GATCGGA | 45820 | 0.0 | 18.860893 | 2 |
CGGAAGA | 48315 | 0.0 | 17.668865 | 5 |
AGAGCGT | 22080 | 0.0 | 17.525087 | 9 |
ATCGGAA | 51395 | 0.0 | 16.943121 | 3 |
GCACACG | 13860 | 0.0 | 16.11133 | 12-13 |
GGTCGCC | 11395 | 0.0 | 14.476718 | 44-45 |
AAGAGCG | 28215 | 0.0 | 14.413318 | 8 |
AGCGTCG | 13825 | 0.0 | 14.215554 | 10-11 |
GAGCGTC | 13785 | 0.0 | 14.171639 | 10-11 |
CGCCGTA | 11735 | 0.0 | 13.613346 | 46-47 |
GAAGAGC | 67220 | 0.0 | 13.112693 | 7 |
AGAGCAC | 35480 | 0.0 | 13.023975 | 9 |
GCGTCGT | 14995 | 0.0 | 12.7465315 | 12-13 |
TATGCCG | 13765 | 0.0 | 12.270811 | 48-49 |
TGCCGTC | 13390 | 0.0 | 12.1618395 | 50-51 |
ACGTCTG | 20075 | 0.0 | 11.299389 | 16-17 |
CGTATGC | 16185 | 0.0 | 10.697784 | 46-47 |
CGTCGTG | 18325 | 0.0 | 10.584008 | 12-13 |
CACACGT | 23225 | 0.0 | 10.5550165 | 12-13 |