Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946479.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37922428 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 19405 | 0.0 | 11.528159 | 5 |
TATACCG | 12505 | 0.0 | 10.5982 | 5 |
CATACAC | 93325 | 0.0 | 10.464396 | 3 |
GTATTAG | 23460 | 0.0 | 10.286209 | 1 |
CCGTGCG | 1895 | 0.0 | 10.168403 | 9 |
TCTATAC | 25965 | 0.0 | 10.081695 | 3 |
GTATAGA | 27675 | 0.0 | 10.079362 | 1 |
CTATACT | 20345 | 0.0 | 10.07153 | 4 |
ACACATG | 93295 | 0.0 | 9.7423725 | 6 |
TACCGTG | 9510 | 0.0 | 9.735368 | 7 |
ATACCGT | 11970 | 0.0 | 9.697717 | 6 |
CTAGTAC | 13625 | 0.0 | 9.589036 | 3 |
ACATGAC | 75625 | 0.0 | 9.582789 | 8 |
CCGTGAG | 10825 | 0.0 | 9.334449 | 9 |
CATGACA | 77045 | 0.0 | 9.290381 | 9 |
GTATTAT | 30905 | 0.0 | 9.284682 | 1 |
TCATACA | 103365 | 0.0 | 9.184292 | 2 |
CACATGA | 90180 | 0.0 | 9.151261 | 7 |
GTGTATG | 91005 | 0.0 | 9.123162 | 1 |
GTATATA | 58840 | 0.0 | 9.089788 | 1 |