Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946475.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 32931678 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 16135 | 0.0 | 13.398277 | 5 |
TATACCG | 13085 | 0.0 | 12.786049 | 5 |
CTATACT | 17740 | 0.0 | 12.053631 | 4 |
GTATAGA | 23815 | 0.0 | 11.811988 | 1 |
TCTATAC | 22355 | 0.0 | 11.667516 | 3 |
TATACAG | 19090 | 0.0 | 11.5704975 | 5 |
CCGTGAG | 7340 | 0.0 | 10.756885 | 9 |
GTATAGG | 12940 | 0.0 | 10.68773 | 1 |
GTACTAG | 14120 | 0.0 | 10.627434 | 1 |
GTGTATG | 67170 | 0.0 | 10.616864 | 1 |
CATACAC | 70340 | 0.0 | 10.616507 | 3 |
TACCGTG | 9705 | 0.0 | 10.604983 | 7 |
TAATACT | 32505 | 0.0 | 10.424259 | 4 |
GTATATA | 46815 | 0.0 | 10.389817 | 1 |
GTATTAG | 24790 | 0.0 | 10.322735 | 1 |
ATACCGT | 14065 | 0.0 | 10.191111 | 6 |
ACCGTGA | 10960 | 0.0 | 10.16256 | 8 |
ACATGAC | 55725 | 0.0 | 10.002303 | 8 |
TACACAG | 10125 | 0.0 | 9.97938 | 5 |
ATACTGT | 20075 | 0.0 | 9.972762 | 6 |