FastQCFastQC Report
Mon 14 Nov 2016
SRR1946520.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946520.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42930484
Sequences flagged as poor quality0
Sequence length32-64
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACGCGT23508.871771E-510.62928655
GGACTCC54050.09.79502836
GTTAGCC37000.09.56200635
CGCACCG33251.7133152E-69.17021150
CCTGTGT46401.0429077E-49.13956458
CCGCGCA25701.3455327E-48.92864945
CGCGCAC31551.0966625E-58.8145448
CCGCGTG30654.2947795E-58.78243952
CGCTCAT33201.4093157E-58.64104151
ACGCGCT26002.0654028E-48.58285341
CGGACTC42550.08.53075735
CGCGCTG24359.6031267E-48.383388542
ACCTAAC68300.08.34182435
CCGTGCA22550.0036955328.325726545
ACCCGCT60252.272832E-58.31834758
CCTAACC75050.08.30833536
TTCGGAC40000.08.00482933
GCCACGC38701.1093118E-57.98321651
GGCAACC49250.07.76365136
CACGCCT46454.5824527E-77.73561746