Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946477.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23544000 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 8100 | 0.0 | 13.460467 | 5 |
TATACTG | 12740 | 0.0 | 13.353538 | 5 |
CTATACT | 12955 | 0.0 | 12.80544 | 4 |
CCGTGCG | 1515 | 0.0 | 12.718686 | 9 |
TCTATAC | 16415 | 0.0 | 12.024461 | 3 |
GTATAGG | 8420 | 0.0 | 11.845023 | 1 |
GTATAGA | 17310 | 0.0 | 11.768009 | 1 |
ACTGTGC | 3960 | 0.0 | 11.749024 | 8 |
GTATTAG | 15970 | 0.0 | 11.459267 | 1 |
CATACAC | 51475 | 0.0 | 11.083567 | 3 |
TAGACTG | 5350 | 0.0 | 11.068123 | 5 |
GTACTAG | 9865 | 0.0 | 10.825324 | 1 |
TAATACT | 21945 | 0.0 | 10.664757 | 4 |
ATACCGT | 8960 | 0.0 | 10.59499 | 6 |
ACACATG | 51615 | 0.0 | 10.561832 | 6 |
ACATGAC | 38760 | 0.0 | 10.488035 | 8 |
TACCGTG | 6145 | 0.0 | 10.477456 | 7 |
CTATACC | 11510 | 0.0 | 10.248389 | 4 |
CCGTGAG | 5460 | 0.0 | 10.242957 | 9 |
GTGTATG | 49945 | 0.0 | 10.229394 | 1 |