FastQCFastQC Report
Mon 14 Nov 2016
SRR1946534.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946534.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41265308
Sequences flagged as poor quality0
Sequence length36-64
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGAGCGG82850.032.3704658
GAGCGGT52100.027.02483258
AGCGGTT55100.019.20002457
AAGAGCG101750.018.7150757
TCGGAAG97600.016.07291655
GCGGTTC39853.6379788E-1214.41790851
ATCGGAA122350.013.20609450
GATCGGA122500.012.9232649
AGATCGG219200.012.23491258
TAGATCG66901.8189894E-1212.02642558
CGGAAGA129050.012.01581752
GAAGAGC160900.011.94330755
CAGATCG61455.1812094E-711.19038157
GTTCAGC52707.8631274E-810.3249354
CAGCAGG65501.2975508E-410.23623258
CCGCCCT28600.00274115948.60523541
CACGCAC38900.00343637878.39265554
GGAAGAG225300.08.05035954
CGGTTCA60807.688515E-67.91500553
GGTTCAG71051.2485323E-57.25694653