Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946522.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26635134 |
Sequences flagged as poor quality | 0 |
Sequence length | 36-42 |
%GC | 39 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGC | 655 | 0.0 | 7.7698655 | 5 |
ACTTAGG | 17590 | 0.0 | 6.767875 | 9 |
CTTAGGC | 17685 | 0.0 | 6.6835623 | 10 |
ACACTAC | 18685 | 0.0 | 6.62823 | 4 |
TACTTAG | 18375 | 0.0 | 6.6173778 | 8 |
CACTACT | 19090 | 0.0 | 6.55819 | 5 |
CTACTTA | 19280 | 0.0 | 6.4914756 | 7 |
TTAGGCT | 19235 | 0.0 | 6.303679 | 11 |
GTCCCGA | 2625 | 0.0 | 6.2691727 | 4 |
GCGGTTT | 23455 | 0.0 | 6.2529244 | 32 |
GTCGCCC | 1375 | 0.0 | 6.167424 | 30 |
TAGGCTT | 19895 | 0.0 | 6.1456804 | 12 |
TGTCCCG | 2670 | 0.0 | 6.101816 | 3 |
ATACCCC | 2915 | 0.0 | 6.054718 | 3 |
GCTGTCC | 2910 | 0.0 | 5.8345113 | 1 |
ACTACTT | 22010 | 0.0 | 5.8018837 | 6 |
GTACGGC | 1290 | 0.0 | 5.784579 | 26 |
GATCGGG | 10375 | 0.0 | 5.720942 | 23 |
GGTTGCG | 19145 | 0.0 | 5.687239 | 28 |
TTGCGGT | 23390 | 0.0 | 5.6123824 | 30 |