Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946555.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 57938846 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAACGTGATATCTCGTA | 97937 | 0.16903512368886325 | TruSeq Adapter, Index 1 (97% over 36bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 53440 | 0.0 | 43.33304 | 4 |
AGAGCGT | 28425 | 0.0 | 40.568535 | 9 |
CGGAAGA | 59495 | 0.0 | 38.92296 | 5 |
GATCGGA | 61005 | 0.0 | 38.338078 | 2 |
ATCGGAA | 61855 | 0.0 | 37.749416 | 3 |
AAGAGCG | 32270 | 0.0 | 36.199013 | 8 |
GAAGAGC | 70315 | 0.0 | 33.08521 | 7 |
AGAGCAC | 36195 | 0.0 | 31.58714 | 9 |
CGCCGTA | 17545 | 0.0 | 31.272907 | 46-47 |
TATGCCG | 20615 | 0.0 | 30.71804 | 48-49 |
TGCCGTC | 20530 | 0.0 | 30.68497 | 50-51 |
GGTCGCC | 18125 | 0.0 | 30.26198 | 44-45 |
CGTATGC | 22610 | 0.0 | 28.374208 | 46-47 |
TGGTCGC | 19165 | 0.0 | 27.976711 | 42-43 |
GAGCGTC | 21345 | 0.0 | 27.167376 | 10-11 |
ATGCCGT | 20340 | 0.0 | 26.63789 | 50-51 |
GGAAGAG | 88430 | 0.0 | 26.573944 | 6 |
GCCGTAT | 20610 | 0.0 | 26.505587 | 48-49 |
GCCGTCT | 20790 | 0.0 | 26.106018 | 52-53 |
GCACACG | 21875 | 0.0 | 25.898996 | 12-13 |