Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946517.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31333908 |
Sequences flagged as poor quality | 0 |
Sequence length | 36-63 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGTACAC | 4730 | 8.731889E-5 | 68.57385 | 57 |
CAGTCAC | 4945 | 1.08812455E-4 | 65.59238 | 57 |
TTAGTAC | 3825 | 0.0032433704 | 63.598885 | 57 |
TCTGCAC | 5330 | 1.5767853E-4 | 60.85447 | 57 |
TACTCAC | 5935 | 2.6825778E-4 | 54.651108 | 57 |
TAGACAC | 4960 | 0.009068902 | 49.045513 | 57 |
TATTTAC | 6810 | 5.288078E-4 | 47.629124 | 57 |
ATAATTC | 8575 | 0.0016439802 | 37.825577 | 57 |
CTTCTAC | 9375 | 0.0025470161 | 34.597794 | 57 |
TATCACA | 11025 | 0.005633103 | 29.419893 | 57 |
GCGGTTC | 4505 | 0.0 | 17.999685 | 57 |
CGGCATT | 4230 | 0.0 | 11.24225 | 1 |
GGCATTC | 6475 | 0.0 | 8.073327 | 2 |
GCTGAAC | 6470 | 0.0 | 7.9283113 | 11 |
CGAGATC | 8525 | 0.0 | 7.8812466 | 18 |
TGTAGGG | 7420 | 0.0 | 7.7836556 | 37 |
CCTGCTG | 6170 | 0.0 | 7.7722883 | 8 |
GCGTCGT | 4630 | 0.0 | 7.7393064 | 31 |
GTAGATC | 5520 | 0.0 | 7.6142173 | 51 |
ATTCCTG | 6820 | 0.0 | 7.506715 | 5 |