FastQCFastQC Report
Mon 14 Nov 2016
SRR1946569.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946569.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125651164
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCTGC1029250.042.4364781
CGCTGCG1111800.039.2871322
CTGCGGC1086400.038.514734
TGCGGCC698450.033.012635
GCTGCGG1339650.032.7987863
TGCGGCA507950.017.2007085
GCGGCCC716650.012.2108366
CTGCGGT528650.012.09205176-77
TGCGGTG606200.011.71208176-77
CGGCCCT392750.011.4636397
TGCGGCT545600.010.2336365
TGCTGCG804450.09.71380774-75
GCGGCCA711300.08.8206646
TGCGGCG675500.08.6066125
CGGTGAT805400.08.48564478-79
GCGGTGA766000.08.29314778-79
GGCCCTA159900.07.6712358
GCGGCCT558800.07.67028146
GCGGCAC623100.07.1352026
GTGATGG883650.07.11419780-81