FastQCFastQC Report
Mon 14 Nov 2016
SRR1946472.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946472.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28059670
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG100400.014.0895415
CCGTGCG18500.012.9561189
GTATAGA197600.012.9262741
TATACTG144350.012.7949865
TACCGTG74250.012.4690637
GTATAGG99200.012.4236751
CTATACT147550.012.4219414
TCTATAC185550.012.3347993
ACTGTGC41950.011.6512468
CATACAC790600.011.6510033
CCGTGAG67250.011.6009169
ACCGTGA86400.011.2597218
ACACATG783900.011.2050226
GTATTAG191950.010.9051681
TATACAG153500.010.8994775
ATACCGT103750.010.8714446
GTACTAG120250.010.7574181
CACATGA757850.010.6909937
ACATGAC574850.010.68543158
GTATATA410550.010.6785021