Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946560.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 117502808 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCCATCCTCATCTCGTA | 124457 | 0.10591831984134371 | TruSeq Adapter, Index 16 (97% over 39bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 79870 | 0.0 | 36.85354 | 4 |
AGAGCGT | 43760 | 0.0 | 33.428047 | 9 |
GATCGGA | 98320 | 0.0 | 30.235262 | 2 |
CGGAAGA | 99845 | 0.0 | 29.659412 | 5 |
ATCGGAA | 101345 | 0.0 | 29.294714 | 3 |
AAGAGCG | 52515 | 0.0 | 28.318789 | 8 |
TATGCCG | 34050 | 0.0 | 26.01197 | 48-49 |
TGCCGTC | 33740 | 0.0 | 25.993237 | 50-51 |
CGCCGTA | 27695 | 0.0 | 25.42198 | 46-47 |
GGTCGCC | 28325 | 0.0 | 24.584688 | 44-45 |
GAAGAGC | 121930 | 0.0 | 24.431974 | 7 |
CGTATGC | 38185 | 0.0 | 23.387854 | 46-47 |
GAGCGTC | 32655 | 0.0 | 22.499224 | 10-11 |
AGAGCAC | 65625 | 0.0 | 22.440779 | 9 |
TGGTCGC | 30800 | 0.0 | 22.147223 | 42-43 |
AGCGTCG | 34095 | 0.0 | 22.11387 | 10-11 |
GCACACG | 34685 | 0.0 | 21.14975 | 12-13 |
CACACGT | 44490 | 0.0 | 21.034487 | 12-13 |
GCGTCGT | 35455 | 0.0 | 20.829557 | 12-13 |
ATGCCGT | 33505 | 0.0 | 20.619122 | 50-51 |