FastQCFastQC Report
Mon 14 Nov 2016
SRR1946564.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946564.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144236224
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG1342650.021.9641324
GGTCGCC352300.020.74113344-45
TATGCCG366300.020.70534748-49
CGCCGTA357900.020.69571546-47
AGAGCGT724600.020.3099279
TGCCGTC380050.020.0568150-51
ATGCCGT373450.018.9070250-51
TGGTCGC389250.018.87770342-43
CGGAAGA1621800.018.278035
CGTATGC424000.018.05681446-47
GCCGTCT395300.017.99161552-53
GATCGGA1674700.017.82112
ATCGGAA1683600.017.7748663
AGTCACG454750.016.6425328-29
AAGAGCG904200.016.5044578
CCGTATC463800.016.28679348-49
GCCGTAT459450.016.15964548-49
GTATGCC444500.016.10566148-49
GAAGAGC1898750.015.7891747
AGAGCAC996700.015.0670189