Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946559.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 60527928 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 35990 | 0.0 | 37.878242 | 4 |
AGAGCGT | 20525 | 0.0 | 32.49943 | 9 |
CGGAAGA | 43845 | 0.0 | 31.070805 | 5 |
GATCGGA | 44725 | 0.0 | 30.996231 | 2 |
ATCGGAA | 46500 | 0.0 | 29.882895 | 3 |
AAGAGCG | 24220 | 0.0 | 27.90875 | 8 |
TGCCGTC | 15640 | 0.0 | 26.317041 | 50-51 |
TATGCCG | 16140 | 0.0 | 25.894989 | 48-49 |
GAAGAGC | 55050 | 0.0 | 25.043592 | 7 |
GGTCGCC | 12635 | 0.0 | 24.914858 | 44-45 |
CGCCGTA | 12965 | 0.0 | 24.550716 | 46-47 |
CGTATGC | 17215 | 0.0 | 24.47085 | 46-47 |
GAGCGTC | 13565 | 0.0 | 24.362928 | 10-11 |
AGAGCAC | 30430 | 0.0 | 22.985998 | 9 |
AGCGTCG | 14860 | 0.0 | 22.951073 | 10-11 |
GCACACG | 15690 | 0.0 | 22.127298 | 12-13 |
CACACGT | 20040 | 0.0 | 21.895561 | 12-13 |
GCGTCGT | 15270 | 0.0 | 21.674488 | 12-13 |
TGGTCGC | 14300 | 0.0 | 21.631985 | 42-43 |
ATGCCGT | 15845 | 0.0 | 20.873222 | 50-51 |