Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946492.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23296486 |
Sequences flagged as poor quality | 0 |
Sequence length | 36-64 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 4455 | 0.0 | 16.071302 | 1 |
GGCATTC | 6455 | 0.0 | 11.798114 | 2 |
GCTGAAC | 6450 | 0.0 | 11.489483 | 11 |
ATTCCTG | 6680 | 0.0 | 10.97236 | 5 |
GCATTCC | 7075 | 0.0 | 10.926153 | 3 |
CCTGCTG | 6960 | 0.0 | 10.526351 | 8 |
CGAGATC | 9150 | 0.0 | 10.319061 | 18 |
CGTGTAG | 4785 | 0.0 | 9.826265 | 35 |
TGAACCG | 8165 | 0.0 | 9.461655 | 13 |
TTCCTGC | 7860 | 0.0 | 9.396689 | 6 |
CCGAGAT | 10795 | 0.0 | 9.19705 | 17 |
CTGAACC | 8500 | 0.0 | 8.819513 | 12 |
GTCGTGT | 5570 | 0.0 | 8.545535 | 33 |
GAGCGTC | 5800 | 0.0 | 8.340205 | 29 |
GAGATCG | 11615 | 0.0 | 8.252208 | 19 |
TCCTGCT | 9315 | 0.0 | 8.173787 | 7 |
CTGCTGA | 9815 | 0.0 | 8.133825 | 9 |
GCGTCGT | 5900 | 0.0 | 8.114506 | 31 |
GTAGATC | 6385 | 0.0 | 8.032378 | 51 |
AATGCCG | 5605 | 0.0 | 7.9125338 | 13 |