FastQCFastQC Report
Mon 14 Nov 2016
SRR1946555.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946555.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57938846
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAACGTGATATCTCGTA979370.16903512368886325TruSeq Adapter, Index 1 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG534400.043.333044
AGAGCGT284250.040.5685359
CGGAAGA594950.038.922965
GATCGGA610050.038.3380782
ATCGGAA618550.037.7494163
AAGAGCG322700.036.1990138
GAAGAGC703150.033.085217
AGAGCAC361950.031.587149
CGCCGTA175450.031.27290746-47
TATGCCG206150.030.7180448-49
TGCCGTC205300.030.6849750-51
GGTCGCC181250.030.2619844-45
CGTATGC226100.028.37420846-47
TGGTCGC191650.027.97671142-43
GAGCGTC213450.027.16737610-11
ATGCCGT203400.026.6378950-51
GGAAGAG884300.026.5739446
GCCGTAT206100.026.50558748-49
GCCGTCT207900.026.10601852-53
GCACACG218750.025.89899612-13