FastQCFastQC Report
Mon 14 Nov 2016
SRR1946560.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946560.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117502808
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCCATCCTCATCTCGTA1244570.10591831984134371TruSeq Adapter, Index 16 (97% over 39bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG798700.036.853544
AGAGCGT437600.033.4280479
GATCGGA983200.030.2352622
CGGAAGA998450.029.6594125
ATCGGAA1013450.029.2947143
AAGAGCG525150.028.3187898
TATGCCG340500.026.0119748-49
TGCCGTC337400.025.99323750-51
CGCCGTA276950.025.4219846-47
GGTCGCC283250.024.58468844-45
GAAGAGC1219300.024.4319747
CGTATGC381850.023.38785446-47
GAGCGTC326550.022.49922410-11
AGAGCAC656250.022.4407799
TGGTCGC308000.022.14722342-43
AGCGTCG340950.022.1138710-11
GCACACG346850.021.1497512-13
CACACGT444900.021.03448712-13
GCGTCGT354550.020.82955712-13
ATGCCGT335050.020.61912250-51