Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946494.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 45600202 |
Sequences flagged as poor quality | 0 |
Sequence length | 32-64 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 3950 | 1.8189894E-12 | 16.361984 | 58 |
AGAGCGG | 5180 | 0.0 | 15.412521 | 58 |
GCGGTTC | 4245 | 2.2997483E-8 | 12.538179 | 58 |
AAGAGCG | 6775 | 0.0 | 11.222893 | 58 |
AGCGGTT | 5105 | 2.5465852E-10 | 11.163062 | 57 |
GATCGGA | 7865 | 0.0 | 11.117656 | 58 |
GCGCGTA | 1415 | 0.0062609604 | 10.989729 | 52 |
GGACTCC | 5600 | 0.0 | 10.447034 | 36 |
CCTAACC | 8350 | 0.0 | 10.191119 | 36 |
TCGCTCG | 3290 | 0.005654203 | 9.24439 | 58 |
GTTAGCC | 4190 | 0.0 | 9.174428 | 35 |
CGATCGG | 3365 | 0.006805025 | 9.038347 | 58 |
ACCTAAC | 7835 | 0.0 | 8.751777 | 35 |
TCGGAAG | 6155 | 5.4205884E-10 | 8.545499 | 55 |
AGGACAC | 7110 | 0.0 | 8.329071 | 35 |
TAGATCG | 4890 | 1.9656218E-6 | 8.2671795 | 56 |
TCGGCAG | 2910 | 0.0012790556 | 8.1441 | 54 |
GGCAACC | 4510 | 0.0 | 7.9600463 | 36 |
CGGACTC | 4350 | 0.0 | 7.881629 | 35 |
ACTGCCG | 2855 | 6.782571E-4 | 7.6849146 | 44 |