Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946473.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 29686138 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 14930 | 0.0 | 14.4798765 | 5 |
TAGACTG | 6725 | 0.0 | 13.487512 | 5 |
GTATTAG | 22710 | 0.0 | 12.178619 | 1 |
ACAGTGC | 6160 | 0.0 | 11.978221 | 8 |
CTATACT | 15490 | 0.0 | 11.741574 | 4 |
TATACAG | 20145 | 0.0 | 11.664592 | 5 |
TCTATAC | 18920 | 0.0 | 11.649821 | 3 |
TATACCG | 11160 | 0.0 | 11.580713 | 5 |
TACACTG | 9375 | 0.0 | 11.529842 | 5 |
GTATAGA | 19480 | 0.0 | 11.276278 | 1 |
TAATACT | 32810 | 0.0 | 11.215596 | 4 |
CATACAC | 52560 | 0.0 | 11.096448 | 3 |
GTATAGG | 10620 | 0.0 | 10.939823 | 1 |
TAGTACT | 15855 | 0.0 | 10.87844 | 4 |
TAGACAG | 7865 | 0.0 | 10.755747 | 5 |
ACTGTGC | 5450 | 0.0 | 10.520509 | 8 |
GTATTAT | 34780 | 0.0 | 10.440602 | 1 |
ATACTGT | 19735 | 0.0 | 10.430468 | 6 |
ACACATG | 51660 | 0.0 | 10.416407 | 6 |
ACATGAC | 40910 | 0.0 | 10.408116 | 8 |