Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946472.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28059670 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10040 | 0.0 | 14.089541 | 5 |
CCGTGCG | 1850 | 0.0 | 12.956118 | 9 |
GTATAGA | 19760 | 0.0 | 12.926274 | 1 |
TATACTG | 14435 | 0.0 | 12.794986 | 5 |
TACCGTG | 7425 | 0.0 | 12.469063 | 7 |
GTATAGG | 9920 | 0.0 | 12.423675 | 1 |
CTATACT | 14755 | 0.0 | 12.421941 | 4 |
TCTATAC | 18555 | 0.0 | 12.334799 | 3 |
ACTGTGC | 4195 | 0.0 | 11.651246 | 8 |
CATACAC | 79060 | 0.0 | 11.651003 | 3 |
CCGTGAG | 6725 | 0.0 | 11.600916 | 9 |
ACCGTGA | 8640 | 0.0 | 11.259721 | 8 |
ACACATG | 78390 | 0.0 | 11.205022 | 6 |
GTATTAG | 19195 | 0.0 | 10.905168 | 1 |
TATACAG | 15350 | 0.0 | 10.899477 | 5 |
ATACCGT | 10375 | 0.0 | 10.871444 | 6 |
GTACTAG | 12025 | 0.0 | 10.757418 | 1 |
CACATGA | 75785 | 0.0 | 10.690993 | 7 |
ACATGAC | 57485 | 0.0 | 10.6854315 | 8 |
GTATATA | 41055 | 0.0 | 10.678502 | 1 |