Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946537.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 60710932 |
Sequences flagged as poor quality | 0 |
Sequence length | 36-64 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGAGCGG | 16565 | 0.0 | 10.173856 | 58 |
GAGCGGT | 10835 | 0.0 | 7.777108 | 58 |
CGGCATT | 8285 | 0.0 | 7.5003796 | 1 |
GCGGTTC | 9745 | 0.0 | 6.6360655 | 58 |
CTACATG | 13905 | 0.0 | 5.9191165 | 58 |
AAGAGCG | 25645 | 0.0 | 5.425431 | 58 |
CCGAGAT | 17740 | 0.0 | 5.4115124 | 17 |
GTTCAGC | 12495 | 4.7293724E-11 | 5.3323817 | 58 |
TGTAGGG | 12005 | 0.0 | 5.320013 | 37 |
ATTCCTG | 12720 | 0.0 | 5.3142176 | 5 |
GGCATTC | 11895 | 0.0 | 5.222475 | 2 |
GCATTCC | 12300 | 0.0 | 5.1613774 | 3 |
GCTGAAC | 12585 | 0.0 | 5.0791993 | 11 |