FastQCFastQC Report
Mon 14 Nov 2016
SRR1946544.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946544.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56978496
Sequences flagged as poor quality0
Sequence length32-64
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGAGCGG115250.013.79824958
CGTGTAG75650.011.63129335
GCGTCGT79300.010.37665231
GAGTGTA107050.010.23353847
CGGCATT65700.09.8370331
GTCGTGT87950.09.82586133
AGTGTAG116100.09.55802148
CGTCGTG93200.09.1219232
GTAGGGA104850.08.98386438
TGTAGGG105800.08.97782637
TCGTGTA100150.08.89809434
GTGTAGG110100.08.51915836
GTGTAGA143550.07.47753249
TAGGGAA132400.07.355602739
AGAGTGT149550.07.33720346
GGCATTC94150.07.05104832
CCTGCTG94250.06.8741418
CCGAGAT135650.06.8634517
AATGCCG59950.06.817000413
GAGCGTC81350.06.663816529