FastQCFastQC Report
Mon 14 Nov 2016
SRR1946486.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946486.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66294678
Sequences flagged as poor quality0
Sequence length36-64
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATT92550.09.161751
AATGCCG83950.06.72121413
CGAGATC173650.06.331516718
GGCATTC134050.06.30433372
CCGAGAT211200.05.993664717
TCGGAAG178450.05.69519423
GCTGAAC130050.05.649890411
GAGATCG206300.05.64541719
ATTCCTG139250.05.6316995
TGCCGAG109350.05.550466515
CGTGTAG77300.05.51775435
CCTGCTG133450.05.4383888
GAGCGTC88500.05.329741529
GCATTCC157250.05.3025833
AGCGTCG91200.05.19957230
TGTAGGG108450.05.09966137
ATCGGAA216700.05.01381922
AAGAGCG200400.05.000018627