FastQCFastQC Report
Mon 14 Nov 2016
SRR1946476.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946476.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28190848
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG102500.013.0212875
TATACTG136950.012.18225
GTACTAG145500.011.6729731
CTAGTAC118200.011.5700443
TCTATAC177100.011.1717973
CATACAC805250.011.1295963
TACCGTG84150.010.6669487
GTATTAG160550.010.6666571
ACATGAC639200.010.6536028
CTATACT140050.010.5367344
CCGTGAG96000.010.5254849
GTATAGA182750.010.4264131
ACACATG801950.010.4077086
CATGACA652200.010.3045769
GTATATA451200.010.208241
GTGTATG769050.010.2041961
CACATGA760000.010.19689757
GTACTAC128900.010.1356446
TCATACA879450.010.0837232
GTATAGG97400.010.0471221