Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946540.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40226132 |
Sequences flagged as poor quality | 0 |
Sequence length | 36-64 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGAGCGG | 7550 | 0.0 | 46.269814 | 58 |
GAGCGGT | 4935 | 0.0 | 43.259125 | 58 |
GCGGTTC | 4295 | 0.0 | 41.666317 | 57 |
AGCGGTT | 5420 | 0.0 | 36.287075 | 55 |
AAGAGCG | 9600 | 0.0 | 28.367254 | 57 |
TCGGAAG | 8860 | 0.0 | 25.467407 | 57 |
GTTCAGC | 5395 | 3.8576945E-7 | 17.986668 | 58 |
CGGAAGA | 11900 | 0.0 | 17.055887 | 54 |
ATCGGAA | 11095 | 0.0 | 16.691427 | 56 |
GATCGGA | 11685 | 0.0 | 16.3735 | 51 |
GAAGAGC | 15260 | 0.0 | 15.902003 | 56 |
CGGTTCA | 5730 | 9.094947E-12 | 14.976569 | 53 |
ACGAGCG | 3125 | 0.0038560315 | 14.939006 | 57 |
TAGATCG | 6080 | 6.002665E-11 | 12.7681675 | 58 |
CAGAGCG | 4060 | 1.7891658E-5 | 12.43346 | 53 |
TCGGACG | 3020 | 0.0039215735 | 11.700626 | 53 |
CGGCAGA | 3590 | 0.001108929 | 11.248991 | 53 |
CAGCAGG | 6955 | 0.0011822201 | 11.161821 | 58 |
CAGATCG | 5795 | 1.7709099E-6 | 11.019688 | 56 |
GGAAGAG | 21050 | 0.0 | 10.992088 | 55 |