Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946545.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34130462 |
Sequences flagged as poor quality | 0 |
Sequence length | 36-64 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATT | 5315 | 0.0 | 12.208099 | 1 |
CGTGTAG | 6320 | 0.0 | 11.752205 | 35 |
GAGTGTA | 7875 | 0.0 | 10.516254 | 47 |
GTCGTGT | 7090 | 0.0 | 10.221098 | 33 |
TGTAGGG | 7925 | 0.0 | 9.757173 | 37 |
TCGTGTA | 7500 | 0.0 | 9.736459 | 34 |
GGCATTC | 7280 | 0.0 | 9.723229 | 2 |
AGTGTAG | 9170 | 0.0 | 9.381613 | 48 |
ATTCCTG | 7570 | 0.0 | 9.199194 | 5 |
GTGTAGG | 8515 | 0.0 | 9.1746235 | 36 |
GTAGGGA | 8180 | 0.0 | 9.119037 | 38 |
GCGTCGT | 7750 | 0.0 | 9.074331 | 31 |
GCTGAAC | 7935 | 0.0 | 8.515593 | 11 |
GCATTCC | 8415 | 0.0 | 8.466097 | 3 |
GTGTAGA | 9760 | 0.0 | 8.344591 | 49 |
AGAGTGT | 10295 | 0.0 | 8.315784 | 46 |
TAGGGAA | 9665 | 0.0 | 7.9813786 | 39 |
CGTCGTG | 8970 | 0.0 | 7.890464 | 32 |
CGAGATC | 10950 | 0.0 | 7.807629 | 18 |
CCTGCTG | 9220 | 0.0 | 7.724995 | 8 |