FastQCFastQC Report
Mon 14 Nov 2016
SRR1946565.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946565.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91183628
Sequences flagged as poor quality0
Sequence length100
%GC36

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG363650.023.207524
GATCGGA458200.018.8608932
CGGAAGA483150.017.6688655
AGAGCGT220800.017.5250879
ATCGGAA513950.016.9431213
GCACACG138600.016.1113312-13
GGTCGCC113950.014.47671844-45
AAGAGCG282150.014.4133188
AGCGTCG138250.014.21555410-11
GAGCGTC137850.014.17163910-11
CGCCGTA117350.013.61334646-47
GAAGAGC672200.013.1126937
AGAGCAC354800.013.0239759
GCGTCGT149950.012.746531512-13
TATGCCG137650.012.27081148-49
TGCCGTC133900.012.161839550-51
ACGTCTG200750.011.29938916-17
CGTATGC161850.010.69778446-47
CGTCGTG183250.010.58400812-13
CACACGT232250.010.555016512-13