FastQCFastQC Report
Mon 14 Nov 2016
SRR1946478.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946478.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18425714
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG91950.012.3687815
GTATATA262350.011.9967141
TATACCG65150.011.7580815
CTATACT96900.011.688444
GTATAGG73500.011.5853331
CATACAC499050.011.4700823
GTATAGA124850.011.1537381
GTGTATG472700.011.0671671
ACATGAC399200.011.0665538
CTAGGCT50300.010.9315364
ACACATG485350.010.9126996
TATACTA162350.010.8263645
CACATGA461300.010.809337
TCTATAC112400.010.66196253
CATGACA411750.010.6381099
GTATTAA138900.010.5674351
TAGGCTG59500.010.4260625
TCATACA542950.010.2916572
GTATTAG113350.010.1686151
GATTGAG446350.010.1289957