FastQCFastQC Report
Mon 14 Nov 2016
SRR1946517.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946517.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31333908
Sequences flagged as poor quality0
Sequence length36-63
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTACAC47308.731889E-568.5738557
CAGTCAC49451.08812455E-465.5923857
TTAGTAC38250.003243370463.59888557
TCTGCAC53301.5767853E-460.8544757
TACTCAC59352.6825778E-454.65110857
TAGACAC49600.00906890249.04551357
TATTTAC68105.288078E-447.62912457
ATAATTC85750.001643980237.82557757
CTTCTAC93750.002547016134.59779457
TATCACA110250.00563310329.41989357
GCGGTTC45050.017.99968557
CGGCATT42300.011.242251
GGCATTC64750.08.0733272
GCTGAAC64700.07.928311311
CGAGATC85250.07.881246618
TGTAGGG74200.07.783655637
CCTGCTG61700.07.77228838
GCGTCGT46300.07.739306431
GTAGATC55200.07.614217351
ATTCCTG68200.07.5067155