Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946567.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 140629918 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGCTGC | 127075 | 0.0 | 43.78166 | 1 |
CGCTGCG | 142605 | 0.0 | 39.04769 | 2 |
CTGCGGC | 139615 | 0.0 | 38.261703 | 4 |
TGCGGCC | 88465 | 0.0 | 33.161533 | 5 |
GCTGCGG | 172210 | 0.0 | 32.52101 | 3 |
TGCGGCA | 63730 | 0.0 | 17.876028 | 5 |
CGGCCCT | 49580 | 0.0 | 12.265808 | 7 |
GCGGCCC | 97055 | 0.0 | 11.93623 | 6 |
CTGCGGT | 64630 | 0.0 | 11.912607 | 76-77 |
TGCGGTG | 72415 | 0.0 | 11.894399 | 76-77 |
TGCGGCT | 66090 | 0.0 | 10.361107 | 5 |
TGCTGCG | 97450 | 0.0 | 9.75988 | 74-75 |
GGCCCTA | 18880 | 0.0 | 9.757813 | 8 |
TGCGGCG | 85655 | 0.0 | 8.762631 | 5 |
GCGGCCA | 93170 | 0.0 | 8.736549 | 6 |
CGGTGAT | 94000 | 0.0 | 8.673175 | 78-79 |
GCGGTGA | 93165 | 0.0 | 8.178279 | 78-79 |
GATGGCG | 106885 | 0.0 | 7.266877 | 82-83 |
ATGGCGA | 88030 | 0.0 | 7.2268615 | 84-85 |
GTGATGG | 101480 | 0.0 | 7.223047 | 80-81 |