Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946324.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31784854 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 9840 | 0.0 | 13.239295 | 5 |
TATACTG | 14635 | 0.0 | 12.0187435 | 5 |
TCTATAC | 18965 | 0.0 | 10.786579 | 3 |
TACCGTG | 7805 | 0.0 | 10.542292 | 7 |
CTATACT | 15180 | 0.0 | 10.533556 | 4 |
CTAGTAC | 9225 | 0.0 | 10.093601 | 3 |
CATACAC | 72520 | 0.0 | 9.979944 | 3 |
GTATAGA | 20295 | 0.0 | 9.969424 | 1 |
TATACAG | 13485 | 0.0 | 9.800215 | 5 |
ATACCGT | 9010 | 0.0 | 9.653998 | 6 |
CCGTGAG | 7125 | 0.0 | 9.634146 | 9 |
ACATGAC | 64930 | 0.0 | 9.50722 | 8 |
ACACATG | 77020 | 0.0 | 9.333923 | 6 |
TAGTACT | 17450 | 0.0 | 9.271091 | 4 |
CTATACC | 15035 | 0.0 | 9.196271 | 4 |
GTATATA | 46025 | 0.0 | 9.190868 | 1 |
GTATTAG | 18150 | 0.0 | 9.177351 | 1 |
CATGACA | 67080 | 0.0 | 9.174699 | 9 |
CACATGA | 74200 | 0.0 | 8.979163 | 7 |
GTGTATG | 70605 | 0.0 | 8.943504 | 1 |