Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946393.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 29737428 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT | 33748 | 0.11348661356994291 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 8630 | 0.0 | 11.271565 | 5 |
ACATGAC | 97565 | 0.0 | 10.374493 | 8 |
TATACTG | 12835 | 0.0 | 10.288099 | 5 |
CATACAC | 134625 | 0.0 | 10.246142 | 3 |
GTATATA | 37675 | 0.0 | 10.119733 | 1 |
ACACATG | 134620 | 0.0 | 10.1054325 | 6 |
CACATGA | 130000 | 0.0 | 10.074159 | 7 |
CATGACA | 103070 | 0.0 | 9.80671 | 9 |
TAGGCTG | 8675 | 0.0 | 9.750519 | 5 |
GTATTAA | 18650 | 0.0 | 9.679521 | 1 |
GTATAGA | 15700 | 0.0 | 9.5819025 | 1 |
TCATACA | 143825 | 0.0 | 9.550323 | 2 |
GTATTAT | 19845 | 0.0 | 9.546746 | 1 |
ATCATAC | 135920 | 0.0 | 9.442365 | 1 |
GTATATG | 22790 | 0.0 | 9.303227 | 1 |
TCTATAC | 14980 | 0.0 | 9.255251 | 3 |
GTGTATG | 129435 | 0.0 | 9.207203 | 1 |
TATACAG | 12975 | 0.0 | 9.163003 | 5 |
GCTGTCC | 8655 | 0.0 | 9.067021 | 8 |
GTCTTAG | 9255 | 0.0 | 9.0415945 | 1 |