FastQCFastQC Report
Tue 15 Nov 2016
SRR1946324.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946324.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31784854
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG98400.013.2392955
TATACTG146350.012.01874355
TCTATAC189650.010.7865793
TACCGTG78050.010.5422927
CTATACT151800.010.5335564
CTAGTAC92250.010.0936013
CATACAC725200.09.9799443
GTATAGA202950.09.9694241
TATACAG134850.09.8002155
ATACCGT90100.09.6539986
CCGTGAG71250.09.6341469
ACATGAC649300.09.507228
ACACATG770200.09.3339236
TAGTACT174500.09.2710914
CTATACC150350.09.1962714
GTATATA460250.09.1908681
GTATTAG181500.09.1773511
CATGACA670800.09.1746999
CACATGA742000.08.9791637
GTGTATG706050.08.9435041