FastQCFastQC Report
Tue 15 Nov 2016
SRR1946286.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946286.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43558528
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG152150.017.3642355
TATACTG212450.014.9140135
TCTATAC279400.014.3015093
ATACCGT141100.014.0925546
CTATACT227850.014.0297914
CCGTGAG111650.013.3872669
TACCGTG118900.013.3629477
CATACAC1046000.013.2400733
GTATAGA311650.012.5736121
CTATACC218900.012.434384
ACACATG1057250.012.3873886
GTGTATG981700.012.3629781
TATACAG199550.012.2737525
ACATGAC847200.012.2508038
ACCGTGA143250.012.1739278
TAGTACT260050.012.1479714
GTATAGG151750.011.9657741
GGACCGT47550.011.9622056
CATGACA865600.011.7887059
TAATACT356200.011.7327344