Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946370.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43103064 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 14635 | 0.0 | 15.4595785 | 5 |
TCTATAC | 27615 | 0.0 | 13.650693 | 3 |
TACCGTG | 10990 | 0.0 | 13.024267 | 7 |
GTATAGA | 30050 | 0.0 | 12.93074 | 1 |
CTATACT | 21460 | 0.0 | 12.577654 | 4 |
TATACTG | 21460 | 0.0 | 12.555254 | 5 |
ATACCGT | 13850 | 0.0 | 12.5028515 | 6 |
CTAGTAC | 13645 | 0.0 | 12.419893 | 3 |
CATACAC | 104410 | 0.0 | 12.265533 | 3 |
ACACATG | 102755 | 0.0 | 11.741716 | 6 |
GTATATA | 62345 | 0.0 | 11.605969 | 1 |
ACATGAC | 78635 | 0.0 | 11.489503 | 8 |
TATACAG | 20130 | 0.0 | 11.426037 | 5 |
GTGTATG | 101250 | 0.0 | 11.253279 | 1 |
CACATGA | 100170 | 0.0 | 11.239414 | 7 |
CATGACA | 79830 | 0.0 | 11.129327 | 9 |
TCATACA | 115745 | 0.0 | 10.93181 | 2 |
TAATACT | 32945 | 0.0 | 10.914423 | 4 |
CTATACC | 22225 | 0.0 | 10.898568 | 4 |
TAGTACT | 26260 | 0.0 | 10.671885 | 4 |