Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946453.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31983250 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTGAGCG | 8370 | 0.0 | 16.469244 | 94 |
GTCGCGC | 1410 | 0.0 | 14.666651 | 8 |
TATACCG | 10240 | 0.0 | 11.063484 | 5 |
TATACTG | 15135 | 0.0 | 11.057129 | 5 |
GTATAGA | 19925 | 0.0 | 11.046814 | 1 |
GTATATA | 44295 | 0.0 | 10.649659 | 1 |
TCGCGCG | 1965 | 0.0 | 10.524031 | 9 |
TCTGAGC | 17405 | 0.0 | 10.460885 | 94 |
TGAGCGG | 8080 | 0.0 | 10.422531 | 94 |
GTATTAG | 18595 | 0.0 | 10.06645 | 1 |
TATACAG | 13905 | 0.0 | 10.040614 | 5 |
ACATGAC | 98990 | 0.0 | 9.870986 | 8 |
CATACAC | 121965 | 0.0 | 9.839893 | 3 |
ACACATG | 124720 | 0.0 | 9.802686 | 6 |
TACCGTG | 7895 | 0.0 | 9.764 | 7 |
GTATTAC | 13525 | 0.0 | 9.667117 | 1 |
TAGACTG | 7730 | 0.0 | 9.608429 | 5 |
TCTATAC | 19400 | 0.0 | 9.595514 | 3 |
GTATTAT | 23855 | 0.0 | 9.562067 | 1 |
CACATGA | 119225 | 0.0 | 9.532901 | 7 |