Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946397.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27448514 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT | 29408 | 0.107138768969424 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 9365 | 0.0 | 12.594829 | 5 |
ATACCGT | 7410 | 0.0 | 11.668559 | 6 |
CCGTGAG | 5825 | 0.0 | 11.213481 | 9 |
TAGACTG | 6640 | 0.0 | 11.04035 | 5 |
GTATAGA | 16210 | 0.0 | 10.874911 | 1 |
TCTATAC | 14490 | 0.0 | 10.63853 | 3 |
CTAGTAC | 8830 | 0.0 | 10.48532 | 3 |
TACCGTG | 7205 | 0.0 | 10.435268 | 7 |
ACATGAC | 93770 | 0.0 | 10.348489 | 8 |
CATACAC | 125385 | 0.0 | 10.112826 | 3 |
GTCGCGC | 1675 | 0.0 | 10.0997 | 8 |
ACCGTGA | 8745 | 0.0 | 9.994796 | 8 |
TATACAG | 11475 | 0.0 | 9.992254 | 5 |
ACACATG | 125425 | 0.0 | 9.977108 | 6 |
CACATGA | 120745 | 0.0 | 9.931827 | 7 |
CATGACA | 98725 | 0.0 | 9.762479 | 9 |
GTATTAT | 18855 | 0.0 | 9.723342 | 1 |
TCATACA | 133905 | 0.0 | 9.428872 | 2 |
AGACCGT | 8065 | 0.0 | 9.324879 | 94 |
TATACTG | 12265 | 0.0 | 9.310329 | 5 |