FastQCFastQC Report
Tue 15 Nov 2016
SRR1946342.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946342.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40189210
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG134100.015.8168955
TATACTG212650.014.8953245
CTATACT212900.014.5915334
TCTATAC260150.014.35845853
GTATAGA288250.014.2409721
TACCGTG100650.014.0337077
ATACCGT128350.013.5277486
GTATAGG142350.013.1317661
CATACAC1057900.013.0812353
GTACTAG154850.013.0423171
GAGCGCG19650.012.8958767
CTAGTAC125150.012.7862173
GTATATA584800.012.577141
ACATGAC822200.012.4423368
CATGACA819900.012.3341519
ACACATG1066900.012.3067596
GTGTATG1006400.012.2832351
CCGTGAG98950.012.1407949
TATACTA378050.012.1270985
CACATGA1029350.012.0262817