Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946363.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 46870174 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATACT | 23150 | 0.0 | 14.983468 | 4 |
CTAGGCT | 12460 | 0.0 | 13.862727 | 4 |
TATACTG | 23635 | 0.0 | 13.742058 | 5 |
TATACCG | 14130 | 0.0 | 13.519279 | 5 |
CATACAC | 119895 | 0.0 | 13.326843 | 3 |
TCTATAC | 27890 | 0.0 | 13.312719 | 3 |
TATACAG | 21250 | 0.0 | 12.943149 | 5 |
ACATGAC | 91875 | 0.0 | 12.83148 | 8 |
ACACATG | 119295 | 0.0 | 12.693235 | 6 |
GTATATA | 62865 | 0.0 | 12.352694 | 1 |
GTGTATG | 117015 | 0.0 | 12.317186 | 1 |
CATGACA | 94090 | 0.0 | 12.28989 | 9 |
CACATGA | 114385 | 0.0 | 12.233686 | 7 |
TATACTA | 41360 | 0.0 | 12.108355 | 5 |
GTCTAGG | 10735 | 0.0 | 11.946984 | 1 |
GTATAGA | 29255 | 0.0 | 11.899146 | 1 |
TCATACA | 132735 | 0.0 | 11.890338 | 2 |
GCTGTCC | 13070 | 0.0 | 11.777489 | 8 |
ATCATAC | 129760 | 0.0 | 11.719243 | 1 |
TAGGCTG | 15410 | 0.0 | 11.665339 | 5 |