FastQCFastQC Report
Tue 15 Nov 2016
SRR1946360.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946360.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48928976
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG165650.016.8342825
TACCGTG118500.014.4216537
TCTATAC329550.014.4025583
ATACCGT159050.014.0799226
TATACTG260650.013.9586545
CTAGTAC156900.013.9136093
CTATACT265050.013.8689554
CCGTGAG118400.013.7997319
CATACAC1335550.013.5581143
ACCGTGA154850.013.3105628
TATACAG224950.012.9600065
GTATAGA342500.012.8654651
ACACATG1328100.012.5491166
GTATATA724900.012.1314021
GCCGTGC51550.012.0223228
GTGTATG1247050.011.982931
ACATGAC964100.011.9215418
CTATACC251450.011.8931684
CACATGA1286700.011.8368327
TCATACA1479250.011.8165212