Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946420.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 15794756 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT | 15812 | 0.10010917547570851 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 4515 | 0.0 | 11.153337 | 5 |
GTATAGA | 8660 | 0.0 | 10.977025 | 1 |
ATACCGT | 4180 | 0.0 | 10.245786 | 6 |
GCGTGTA | 12835 | 0.0 | 10.028564 | 94 |
TAGGCCG | 1695 | 0.0 | 9.995663 | 5 |
GGCAGAC | 14035 | 0.0 | 9.840541 | 94 |
GTATTAG | 8205 | 0.0 | 9.75038 | 1 |
ACACATG | 66350 | 0.0 | 9.717617 | 6 |
ACATGAC | 48920 | 0.0 | 9.697961 | 8 |
CATACAC | 65960 | 0.0 | 9.624596 | 3 |
CTAGTAC | 4995 | 0.0 | 9.609834 | 3 |
TATACAG | 6515 | 0.0 | 9.463148 | 5 |
CTATACT | 7525 | 0.0 | 9.443314 | 4 |
AGGCGTG | 15810 | 0.0 | 9.419145 | 94 |
GTATATA | 21045 | 0.0 | 9.414221 | 1 |
CACATGA | 63435 | 0.0 | 9.399969 | 7 |
ACTGTGC | 2710 | 0.0 | 9.378446 | 8 |
CCGTTCA | 9320 | 0.0 | 9.375212 | 94 |
GGCGTGT | 14535 | 0.0 | 9.37275 | 94 |
GATTGAG | 57660 | 0.0 | 9.264031 | 7 |