FastQCFastQC Report
Tue 15 Nov 2016
SRR1946339.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946339.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65392180
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG210200.015.7341335
CTAGTAC244550.014.2162433
TATACTG334850.014.1140155
TCTATAC438250.013.743173
CCGTGCG41100.013.6024459
TACCGTG160800.013.3518687
CATACAC1585750.013.1780413
CTATACT353700.013.1100064
ATACCGT208500.012.9566
GTATAGA459350.012.8033931
ACACATG1547000.012.5268776
CCGTGAG174550.012.5154069
ACATGAC1152650.012.4760688
CATGACA1160200.012.2045639
TAGTACT464350.012.1612954
GTATAGG227650.012.060261
TATACAG308600.012.0263575
ACCGTGA218800.011.9811568
CACATGA1515250.011.939917
GTACTAG292200.011.8576531