FastQCFastQC Report
Tue 15 Nov 2016
SRR1946396.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946396.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36343994
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT373670.10281478694939251No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG130600.012.7374415
AGACCGG117100.012.08189694
ATACCGT110900.011.9914656
TACCGTG109000.011.726257
CCGTGAG97600.011.2663859
GTATAGA221350.011.1706931
TCTATAC198150.010.6731033
CTAGTAC139000.010.2785313
ACCGTGA128300.010.218718
GTACTAG158950.010.0256621
CTGAGCG307050.09.70522694
ACATGAC938500.09.658658
CATACAC1464150.09.6039153
GTATATA508100.09.473811
TAGACCG77850.09.3561075
ACACATG1473100.09.3306296
GTACTAC139250.09.24646
CACATGA1424850.09.2310367
GTATTAT266750.09.1461181
CCTAGTA144100.09.1334682