FastQCFastQC Report
Tue 15 Nov 2016
SRR1946392.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946392.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28961538
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT306210.105729882163026No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGG102100.013.39621194
TATACCG106900.012.7481755
CTGAGCG323050.012.49793194
GTCGCGC16750.012.3441048
TGAGCGG297000.012.28061194
GTATAGA204800.011.5459591
GAGCGGG240100.011.39319594
ATACCGT91150.011.13569456
TCGCGCG22250.010.7711459
CAGACCG99400.010.54481292-93
GGCAGAC102700.010.5263390-91
TATACTG127700.010.5245335
GACCGGC67250.010.41378794
TGATGGC353550.010.36951594
GTATTAG146150.010.1321991
TACCGTG85600.010.1009987
GCGTGTA89350.010.07382992-93
TCTGAGC436400.010.0487494
TCTATAC185550.010.0304843
GGCGTGT101650.09.82587290-91