FastQCFastQC Report
Tue 15 Nov 2016
SRR1946397.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946397.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27448514
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT294080.107138768969424No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG93650.012.5948295
ATACCGT74100.011.6685596
CCGTGAG58250.011.2134819
TAGACTG66400.011.040355
GTATAGA162100.010.8749111
TCTATAC144900.010.638533
CTAGTAC88300.010.485323
TACCGTG72050.010.4352687
ACATGAC937700.010.3484898
CATACAC1253850.010.1128263
GTCGCGC16750.010.09978
ACCGTGA87450.09.9947968
TATACAG114750.09.9922545
ACACATG1254250.09.9771086
CACATGA1207450.09.9318277
CATGACA987250.09.7624799
GTATTAT188550.09.7233421
TCATACA1339050.09.4288722
AGACCGT80650.09.32487994
TATACTG122650.09.3103295