Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946410.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26701372 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 2090 | 0.0 | 13.042989 | 8 |
GCTGTCC | 7420 | 0.0 | 12.224999 | 8 |
TATACCG | 9285 | 0.0 | 11.898875 | 5 |
TAGGCTG | 8770 | 0.0 | 11.793508 | 5 |
CTAGGCT | 8760 | 0.0 | 11.216413 | 4 |
TATACTG | 11880 | 0.0 | 10.724395 | 5 |
TAGGCGG | 7410 | 0.0 | 10.722111 | 4 |
CTAGTAC | 9535 | 0.0 | 10.699249 | 3 |
ACATGAC | 89425 | 0.0 | 10.653449 | 8 |
AGGTCGC | 3145 | 0.0 | 10.609938 | 6 |
CATACAC | 106190 | 0.0 | 10.430518 | 3 |
ACACATG | 107605 | 0.0 | 10.316266 | 6 |
TACCGTG | 7465 | 0.0 | 10.261367 | 7 |
CACATGA | 103865 | 0.0 | 10.230074 | 7 |
CATGACA | 93765 | 0.0 | 10.18295 | 9 |
TCGCGCG | 2595 | 0.0 | 10.145072 | 9 |
CGCCTAG | 8165 | 0.0 | 10.134199 | 1 |
GTATAGA | 15560 | 0.0 | 10.122042 | 1 |
GTACTAC | 9520 | 0.0 | 10.070901 | 6 |
CTGTCCC | 10295 | 0.0 | 10.046176 | 9 |