FastQCFastQC Report
Tue 15 Nov 2016
SRR1946368.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946368.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33372866
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG171850.016.2520075
TATACCG115100.015.4154445
CTAGTAC109450.014.2827853
TCTATAC215700.014.2552763
CTATACT177700.014.1592954
GTATAGG117600.013.5847021
TATACAG164050.013.4481085
CATACAC783300.013.0351383
TACCGTG89750.012.7591217
TAGGCTG96300.012.7219545
GTATAGA232850.012.6926671
ATACCGT108050.012.5086286
GTATATA510050.012.4918121
CTAGGCT82800.012.3592034
GTGTATG749550.012.2365141
GTACTAG138950.012.2075121
ACACATG781700.012.0729636
TAGTACT217550.011.8893144
ACATGAC576200.011.8031768
CATGACA569000.011.6555049