FastQCFastQC Report
Tue 15 Nov 2016
SRR1946439.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946439.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22376976
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGAGCG88400.020.41504194
AGACCGG56200.019.65182194
TGAGCGG80400.015.78261794
AGCGGGC44050.013.070178-79
CCGTGAG54950.012.57299
CGGGCTG46750.012.56434880-81
TGGCGCG43700.012.31438778-79
TCTGAGC159300.012.18443994
GTATAGA141300.012.045561
CAGACCG53400.012.01388692-93
GGCTGGC49400.011.89029782-83
TATACCG78550.011.73025
GCGGGCT54150.011.63041178-79
GGCAGAC54150.011.58763690-91
TACCGTG63400.011.342597
TCTCTGA440950.011.20171794
GCGTGTA44700.011.19783992-93
TATACTG98750.011.18732555
TCTATAC124100.011.1369733
ATACCGT64600.011.1320916