Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946405.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37131930 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12595 | 0.0 | 14.1838875 | 5 |
CTAGTAC | 16950 | 0.0 | 13.756811 | 3 |
CCGTGAG | 10745 | 0.0 | 13.432271 | 9 |
GTACTAC | 17610 | 0.0 | 12.356341 | 6 |
CCTAGTA | 17845 | 0.0 | 12.355898 | 2 |
ATACCGT | 10050 | 0.0 | 12.111612 | 6 |
TACCGTG | 9335 | 0.0 | 11.4779005 | 7 |
GTATAGA | 22470 | 0.0 | 11.382061 | 1 |
ACCGTGA | 14700 | 0.0 | 11.318252 | 8 |
TAGACCG | 10890 | 0.0 | 11.051519 | 5 |
TCTATAC | 20380 | 0.0 | 10.634144 | 3 |
GACCGTG | 8785 | 0.0 | 10.591693 | 7 |
TATACTG | 17040 | 0.0 | 10.5391035 | 5 |
TAGTACT | 33345 | 0.0 | 10.489194 | 4 |
AGACCGT | 11110 | 0.0 | 10.448433 | 6 |
GTACTAG | 20720 | 0.0 | 10.43742 | 1 |
ACATGAC | 102010 | 0.0 | 10.278985 | 8 |
ACACATG | 131065 | 0.0 | 9.925391 | 6 |
CATACAC | 130300 | 0.0 | 9.8821945 | 3 |
ACTACTC | 26705 | 0.0 | 9.873331 | 8 |