FastQCFastQC Report
Tue 15 Nov 2016
SRR1946402.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946402.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30217154
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC328010.1085509244186266No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG101650.013.6838995
TACCGTG75300.012.6682487
CCGTGAG74650.012.2120589
TCTATAC186850.011.3941813
GTATAGA203800.011.3258381
ATACCGT93000.010.8130386
CTAGTAC100800.010.7237173
ACCGTGA100250.010.406048
ACATGAC984450.09.8903818
CTGAGCG178950.09.84961694
CTATACC147250.09.7027834
CATACAC1161300.09.6885273
GTATATA452600.09.5453981
ACACATG1172800.09.5160476
CATGACA1017500.09.4952339
TATACTG144600.09.4894295
TGAGCGG172750.09.46849394
TATACAG132700.09.4550955
CACATGA1149350.09.3422057
GTATTAT232800.09.248591