Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946447.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28516834 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGAGCGG | 11255 | 0.0 | 14.447106 | 94 |
CTGAGCG | 11330 | 0.0 | 14.102602 | 94 |
GTCGCGC | 2085 | 0.0 | 13.074536 | 8 |
GAGCGGG | 8185 | 0.0 | 12.861143 | 94 |
TAGGCTG | 8715 | 0.0 | 11.813726 | 5 |
TATACCG | 10280 | 0.0 | 11.661576 | 5 |
ATACCGT | 8250 | 0.0 | 11.565954 | 6 |
TCGCGCG | 2720 | 0.0 | 11.231667 | 9 |
GCTGTCC | 7545 | 0.0 | 10.8391285 | 8 |
TATACTG | 12795 | 0.0 | 10.765582 | 5 |
CTAGGCT | 8650 | 0.0 | 10.706815 | 4 |
TCTATAC | 15975 | 0.0 | 10.6237 | 3 |
GTATATA | 44010 | 0.0 | 10.523342 | 1 |
GTATAGA | 17440 | 0.0 | 10.514461 | 1 |
TGATGGC | 15575 | 0.0 | 10.500294 | 94 |
TACCGTG | 7400 | 0.0 | 10.162902 | 7 |
CATACAC | 99770 | 0.0 | 10.093202 | 3 |
GTACTAG | 11755 | 0.0 | 10.07968 | 1 |
ACATGAC | 76920 | 0.0 | 10.00873 | 8 |
CTAGTAC | 9950 | 0.0 | 9.969396 | 3 |