Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946443.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34412692 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTGAG | 9120 | 0.0 | 13.811585 | 9 |
CTGAGCG | 12275 | 0.0 | 13.055274 | 94 |
TATACCG | 13390 | 0.0 | 12.709786 | 5 |
ATACCGT | 10890 | 0.0 | 12.17195 | 6 |
GTCGCGC | 2365 | 0.0 | 12.122888 | 8 |
ACCGTGA | 13115 | 0.0 | 11.503874 | 8 |
GTATAGA | 21310 | 0.0 | 11.186822 | 1 |
CTAGTAC | 13965 | 0.0 | 11.109197 | 3 |
TGAGCGG | 12785 | 0.0 | 11.027412 | 94 |
TACCGTG | 8815 | 0.0 | 10.98435 | 7 |
TCTATAC | 19250 | 0.0 | 10.940997 | 3 |
TCGCGCG | 2980 | 0.0 | 10.567253 | 9 |
TAGGCTG | 10225 | 0.0 | 10.298998 | 5 |
ACATGAC | 115930 | 0.0 | 10.273494 | 8 |
TATACTG | 14795 | 0.0 | 10.200004 | 5 |
GTACTAG | 17845 | 0.0 | 10.144402 | 1 |
CATACAC | 142190 | 0.0 | 9.951924 | 3 |
TATACAG | 14795 | 0.0 | 9.945798 | 5 |
ACACATG | 140645 | 0.0 | 9.812298 | 6 |
CACATGA | 135360 | 0.0 | 9.757655 | 7 |