Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946302.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22329486 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 7820 | 0.0 | 16.886898 | 5 |
TACCGTG | 6335 | 0.0 | 15.206605 | 7 |
GTCGCGC | 1035 | 0.0 | 14.9828615 | 8 |
ATACCGT | 6935 | 0.0 | 14.501073 | 6 |
TCTATAC | 14570 | 0.0 | 14.097916 | 3 |
CCGTGAG | 5395 | 0.0 | 13.675033 | 9 |
CTAGTAC | 7290 | 0.0 | 13.669144 | 3 |
CATACAC | 57240 | 0.0 | 13.146941 | 3 |
GTATAGA | 15505 | 0.0 | 12.994983 | 1 |
TATACTG | 10460 | 0.0 | 12.894382 | 5 |
CTATACC | 11230 | 0.0 | 12.807804 | 4 |
CTATACT | 11325 | 0.0 | 12.658861 | 4 |
TAGACTG | 5715 | 0.0 | 12.416839 | 5 |
ACACATG | 56090 | 0.0 | 12.340994 | 6 |
ACATGAC | 38840 | 0.0 | 12.243976 | 8 |
TAGTACT | 14440 | 0.0 | 11.946258 | 4 |
CACATGA | 52160 | 0.0 | 11.74803 | 7 |
ACCGTGA | 7420 | 0.0 | 11.716258 | 8 |
CATGACA | 40965 | 0.0 | 11.677637 | 9 |
TCATACA | 64460 | 0.0 | 11.5577135 | 2 |