FastQCFastQC Report
Tue 15 Nov 2016
SRR1946398.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946398.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38009724
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT438300.11531259737639768No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC24700.015.0294298
TCGCGCG30450.012.5000189
CTGAGCG280250.012.47822694
AGACCGA157150.011.00674594
TGAGCGG259300.010.80361894
TATACCG121000.010.757475
GTATAGA218850.010.5039441
TATACTG169300.010.4363035
TAGGCTG125650.010.1723725
CAGACCG109900.09.8797292-93
TATACAG162000.09.8623345
GTATATA534300.09.8190411
ACATGAC1183150.09.7385228
TCTGAGC403300.09.68497194
CTAGTAC125950.09.6641253
ATCTCTG1118100.09.6435894
CTAGGCT114850.09.6160744
CATACAC1530650.09.5978513
TCTATAC202000.09.5853233
TAGGCGG102000.09.5374244