FastQCFastQC Report
Tue 15 Nov 2016
SRR1946275.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946275.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23607574
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG119850.015.919275
TATACCG85750.015.3995235
CATACAC684050.014.0721953
ACATGAC539350.013.9226498
TCTATAC147650.013.8476323
CTATACT119400.013.5417214
ACACATG694350.013.5219196
ATACCGT70650.013.502226
TACCGTG63600.013.4472017
TAGGCTG65700.013.3755415
CATGACA562200.013.34839259
CACATGA664650.013.284697
GTATAGA155500.013.2569171
TAGGCCG26650.013.2251065
GTCGCGC9150.012.8391058
GTGTATG658150.012.78621
CTAGGCT58900.012.6882464
TCATACA770750.012.5380312
GCTGTCC57900.012.2550248
ATCATAC759200.012.2374171