Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946319.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26855142 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 13285 | 0.0 | 14.367561 | 5 |
GAGCGCG | 1220 | 0.0 | 13.871235 | 7 |
TACCGTG | 5965 | 0.0 | 13.869944 | 7 |
TATACCG | 8340 | 0.0 | 13.867163 | 5 |
CATACAC | 80540 | 0.0 | 13.852035 | 3 |
GTGTATG | 76175 | 0.0 | 13.575425 | 1 |
TCTATAC | 16740 | 0.0 | 13.452641 | 3 |
CTATACT | 14050 | 0.0 | 13.418039 | 4 |
ACATGAC | 61045 | 0.0 | 13.413702 | 8 |
CCGTGAG | 5915 | 0.0 | 13.1912565 | 9 |
ACACATG | 78085 | 0.0 | 13.130409 | 6 |
GATTGAG | 71335 | 0.0 | 13.120217 | 7 |
CATGACA | 62280 | 0.0 | 13.10189 | 9 |
ATTGAGT | 77120 | 0.0 | 12.994836 | 8 |
TTGAGTA | 75195 | 0.0 | 12.93315 | 9 |
GCGCGCC | 1545 | 0.0 | 12.777728 | 9 |
GTACTAG | 9490 | 0.0 | 12.691472 | 1 |
CACATGA | 73880 | 0.0 | 12.680982 | 7 |
GTATAGA | 17535 | 0.0 | 12.52995 | 1 |
TCATACA | 88875 | 0.0 | 12.39018 | 2 |