FastQCFastQC Report
Tue 15 Nov 2016
SRR1946340.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946340.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58201994
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG206550.016.6950535
TACCGTG160250.016.1832397
TCTATAC390250.014.8562043
CCGTGAG156600.014.6103839
TATACTG305050.014.5692455
ATACCGT192550.014.5419886
CTAGTAC203300.014.1432653
CATACAC1531350.013.9166333
CTATACT310550.013.6310364
GTATAGA413100.013.349721
ACATGAC1243300.013.2445288
ACCGTGA205550.013.2338288
ACACATG1554800.013.1049676
CATGACA1275150.012.7110739
CACATGA1497700.012.58834657
TATACAG278850.012.4674615
TCATACA1693350.012.4659372
CTATACC305800.012.2910254
GTGTATG1467500.012.068321
CCTAGTA221950.012.0657662