FastQCFastQC Report
Tue 15 Nov 2016
SRR1946291.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946291.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23949624
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC11650.017.7504068
CTATACT114800.015.1065764
TATACCG82050.014.5491195
TCTATAC135050.014.1642073
TATACTG109950.014.0631395
CATACAC667250.013.82687953
TCGCGCG16850.013.6671439
ACATGAC533350.013.4645748
ACACATG685950.013.1892436
GTGTATG632200.012.9317551
CATGACA554950.012.8896879
CACATGA661850.012.7747727
GTATAGA147750.012.7103531
TATACAG98650.012.624975
TCATACA737600.012.419272
ATCATAC726400.012.3821771
CGAGGGG29400.012.318500594
GTATATA326000.012.0409471
GGACCGT24600.012.0361346
CTAGTAC67400.011.8544523