Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946413.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39034880 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 11855 | 0.0 | 11.976222 | 5 |
CATACAC | 116805 | 0.0 | 11.152802 | 3 |
ACACATG | 113585 | 0.0 | 10.985531 | 6 |
ACATGAC | 94755 | 0.0 | 10.847961 | 8 |
GTATAGA | 24960 | 0.0 | 10.830799 | 1 |
GTATTAG | 22045 | 0.0 | 10.684763 | 1 |
TATACTG | 20300 | 0.0 | 10.606788 | 5 |
CACATGA | 109910 | 0.0 | 10.603769 | 7 |
GTATATA | 57100 | 0.0 | 10.531052 | 1 |
TATACAG | 17285 | 0.0 | 10.471425 | 5 |
GTATAGG | 13775 | 0.0 | 10.444005 | 1 |
CATGACA | 97475 | 0.0 | 10.437294 | 9 |
GTGTATG | 109590 | 0.0 | 10.210412 | 1 |
CTAGTAC | 12080 | 0.0 | 10.11848 | 3 |
TCATACA | 127150 | 0.0 | 10.016578 | 2 |
TCTATAC | 23845 | 0.0 | 10.015561 | 3 |
CTATACT | 19630 | 0.0 | 9.819016 | 4 |
ATCATAC | 122165 | 0.0 | 9.721289 | 1 |
GTACTAG | 13475 | 0.0 | 9.420464 | 1 |
GATTGAG | 100410 | 0.0 | 9.323054 | 7 |