FastQCFastQC Report
Tue 15 Nov 2016
SRR1946452.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946452.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28040540
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC362840.12939836394020943No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGAGCG106900.016.94330494
TGAGCGG101500.016.77867194
GTCGCGC18650.013.3565058
TCGCGCG22200.011.6439449
TGATGGC152500.011.19829294
TCTGAGC193800.011.16655394
ATCTCTG562200.010.81988794
TCTCTGA496000.010.62310394
GCTGTCC77000.010.49865158
TATACCG89100.010.4464255
ACATGAC982900.010.4385528
TATACTG122700.010.2676365
TAGGCTG89750.010.161265
GTATTAG142000.010.0030061
CTATACT129650.09.9710394
ACACATG1225650.09.95596
TATACAG118600.09.9487685
CACATGA1181850.09.9389927
CATGACA1028800.09.9133219
CATACAC1211200.09.8698543