Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946301.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19429314 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 6595 | 0.0 | 15.035628 | 5 |
TATACTG | 9750 | 0.0 | 13.785273 | 5 |
TACCGTG | 4865 | 0.0 | 13.426383 | 7 |
TCTATAC | 11570 | 0.0 | 13.285396 | 3 |
CATACAC | 49100 | 0.0 | 12.464923 | 3 |
ATACCGT | 5785 | 0.0 | 12.428558 | 6 |
TATACAG | 9120 | 0.0 | 12.4187 | 5 |
CCGTGAG | 4685 | 0.0 | 12.337181 | 9 |
CTATACT | 9995 | 0.0 | 12.274897 | 4 |
ACACATG | 49295 | 0.0 | 12.21178 | 6 |
GTGTATG | 47070 | 0.0 | 11.851311 | 1 |
ACATGAC | 40070 | 0.0 | 11.727442 | 8 |
GTATAGA | 13105 | 0.0 | 11.4949 | 1 |
GTCGCGC | 780 | 3.45608E-11 | 11.446734 | 8 |
CATGACA | 40825 | 0.0 | 11.372375 | 9 |
TCATACA | 55535 | 0.0 | 11.105221 | 2 |
CTATACC | 9230 | 0.0 | 11.051422 | 4 |
ACCGTGA | 6110 | 0.0 | 10.9980955 | 8 |
CACATGA | 47595 | 0.0 | 10.939704 | 7 |
GTATATA | 29635 | 0.0 | 10.833572 | 1 |