FastQCFastQC Report
Tue 15 Nov 2016
SRR1946313.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946313.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27378950
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG101300.013.7354125
GTCGCGC15800.013.6813618
TACCGTG74500.012.3629927
TCTATAC178650.012.1035913
TCGCGCG19450.011.8387719
ATACCGT84850.011.7971466
CCGTGAG59250.011.4210039
GTATAGA193300.010.9724641
AGGTCGC24850.010.7794766
CTATACT135550.010.6809684
TATACTG133000.010.63835055
TATACAG119400.010.550915
GTATAGG103000.010.3188351
CTATACC140550.010.1672194
GTATATA390300.010.0852421
CATACAC738650.09.94035153
ACCGTGA80300.09.8900798
ACATGAC584150.09.8626748
ACACATG738700.09.6890466
GTGTATG713750.09.5605031