Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946352.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 86536964 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 28765 | 0.0 | 14.508733 | 5 |
TATACTG | 44355 | 0.0 | 14.320143 | 5 |
GTCGCGC | 4050 | 0.0 | 14.143107 | 8 |
CTAGTAC | 31585 | 0.0 | 14.031295 | 3 |
CTATACT | 46010 | 0.0 | 13.927946 | 4 |
CATACAC | 240750 | 0.0 | 13.60728 | 3 |
TCTATAC | 53825 | 0.0 | 13.318694 | 3 |
ACATGAC | 167950 | 0.0 | 12.987908 | 8 |
ACACATG | 234640 | 0.0 | 12.965363 | 6 |
CTAGGCT | 23490 | 0.0 | 12.790975 | 4 |
GTATAGG | 30965 | 0.0 | 12.759004 | 1 |
CATGACA | 170505 | 0.0 | 12.630824 | 9 |
TATACAG | 40320 | 0.0 | 12.586277 | 5 |
TAGTACT | 58675 | 0.0 | 12.585843 | 4 |
CACATGA | 225795 | 0.0 | 12.583889 | 7 |
GTACTAG | 38995 | 0.0 | 12.444666 | 1 |
GTATAGA | 57545 | 0.0 | 12.367927 | 1 |
TCATACA | 263870 | 0.0 | 12.323569 | 2 |
GCTGTCC | 23430 | 0.0 | 12.243596 | 8 |
GTGTATG | 228095 | 0.0 | 12.161747 | 1 |