Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946391.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23251680 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGTAC | 8810 | 0.0 | 12.483086 | 3 |
CTGAGCG | 8495 | 0.0 | 12.1170635 | 94 |
TATACCG | 7660 | 0.0 | 11.962747 | 5 |
GTATAGA | 16415 | 0.0 | 11.828215 | 1 |
TCTATAC | 14835 | 0.0 | 11.246641 | 3 |
TGAGCGG | 8570 | 0.0 | 11.243193 | 94 |
ATACCGT | 7080 | 0.0 | 11.150481 | 6 |
CCGTGAG | 6135 | 0.0 | 10.646769 | 9 |
TAGTACT | 17760 | 0.0 | 10.399959 | 4 |
TATACTG | 11335 | 0.0 | 10.074182 | 5 |
GTACTAC | 9830 | 0.0 | 10.038836 | 6 |
CTATACT | 11520 | 0.0 | 10.036094 | 4 |
AGACCGC | 3275 | 0.0 | 9.7592 | 94 |
CCTAGTA | 10215 | 0.0 | 9.756026 | 2 |
GTATAGG | 7810 | 0.0 | 9.751558 | 1 |
CATACAC | 71330 | 0.0 | 9.679025 | 3 |
ACATGAC | 53430 | 0.0 | 9.480934 | 8 |
TACCGTG | 5815 | 0.0 | 9.454789 | 7 |
CTATACC | 11640 | 0.0 | 9.44811 | 4 |
GTATTAT | 19275 | 0.0 | 9.4390135 | 1 |