Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946379.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 16262912 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 8335 | 0.0 | 15.675476 | 5 |
CTATACT | 8855 | 0.0 | 15.444929 | 4 |
ACATGAC | 32805 | 0.0 | 14.598749 | 8 |
TATACCG | 5145 | 0.0 | 14.432887 | 5 |
CATACAC | 47240 | 0.0 | 14.415841 | 3 |
ACACATG | 44195 | 0.0 | 14.335019 | 6 |
GAGCGCG | 855 | 0.0 | 14.29186 | 7 |
CATGACA | 33500 | 0.0 | 13.9732065 | 9 |
TCTATAC | 10895 | 0.0 | 13.760839 | 3 |
CACATGA | 42340 | 0.0 | 13.664342 | 7 |
GTATAGA | 11560 | 0.0 | 13.601279 | 1 |
CCGTGCG | 885 | 0.0 | 13.276338 | 9 |
GTCGCGC | 675 | 1.8189894E-12 | 13.229131 | 8 |
GTGTATG | 45080 | 0.0 | 13.168075 | 1 |
TCATACA | 52015 | 0.0 | 12.911751 | 2 |
TATACAG | 7515 | 0.0 | 12.632925 | 5 |
GTATAGG | 5815 | 0.0 | 12.628914 | 1 |
ATCATAC | 50785 | 0.0 | 12.485997 | 1 |
TAATACT | 12810 | 0.0 | 12.474159 | 4 |
TTGAGTA | 43430 | 0.0 | 12.19595 | 9 |