Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946361.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 56799204 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 19590 | 0.0 | 17.086191 | 5 |
TCTATAC | 36625 | 0.0 | 15.612348 | 3 |
GTCGCGC | 2625 | 0.0 | 15.203141 | 8 |
CTAGTAC | 18960 | 0.0 | 15.054411 | 3 |
TACCGTG | 15485 | 0.0 | 14.826239 | 7 |
CTATACT | 29450 | 0.0 | 14.761288 | 4 |
TATACTG | 29270 | 0.0 | 14.498927 | 5 |
ATACCGT | 17575 | 0.0 | 14.077617 | 6 |
GTATAGA | 38690 | 0.0 | 13.598556 | 1 |
CATACAC | 144965 | 0.0 | 13.585241 | 3 |
TATACAG | 25730 | 0.0 | 13.191333 | 5 |
ACATGAC | 114145 | 0.0 | 12.977354 | 8 |
ACACATG | 149830 | 0.0 | 12.9628525 | 6 |
CTAGGCT | 14945 | 0.0 | 12.847716 | 4 |
GTATAGG | 20540 | 0.0 | 12.624441 | 1 |
CATGACA | 116645 | 0.0 | 12.461735 | 9 |
TAGTACT | 36110 | 0.0 | 12.40279 | 4 |
CACATGA | 145280 | 0.0 | 12.390238 | 7 |
TAGGCTG | 18860 | 0.0 | 12.296327 | 5 |
GTGTATG | 137575 | 0.0 | 12.172885 | 1 |