FastQCFastQC Report
Tue 15 Nov 2016
SRR1946437.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946437.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27883010
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC323050.1158590840802338No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGAGCG86600.017.69118594
TGAGCGG82500.014.92466394
TGGCGCG37800.010.8790378-79
GTATAGA175000.010.7202061
ACATGAC789150.010.458458
CTATACT136250.010.2475964
GTACTAG96000.010.2363081
TATACCG90500.010.2333965
GTATATA395950.010.1648671
GTATTAG155000.010.0407141
ACACATG998950.010.017646
CATGACA820000.09.9674179
CATACAC1003700.09.8874973
AGCGGGC42100.09.82368778-79
CACATGA977450.09.665537
GACCGTG41750.09.5694427
TATACTG127050.09.3615545
TCTATAC161000.09.3146573
GTATTAA194600.09.2538881
CCGTGAG56750.09.1929319