Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946399.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24424918 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGACCGC | 3830 | 0.0 | 16.56743 | 94 |
GTCGCGC | 2140 | 0.0 | 13.394896 | 8 |
CCGTGAG | 6785 | 0.0 | 12.951349 | 9 |
TATACCG | 9050 | 0.0 | 12.877425 | 5 |
CTGAGCG | 11110 | 0.0 | 12.268857 | 94 |
TCGCGCG | 2455 | 0.0 | 12.250442 | 9 |
TGAGCGG | 11010 | 0.0 | 12.166838 | 94 |
TAGGCGG | 7680 | 0.0 | 11.688135 | 4 |
TAGGCTG | 8785 | 0.0 | 11.072725 | 5 |
TAGACCG | 7460 | 0.0 | 10.897658 | 5 |
GGTCGCG | 3010 | 0.0 | 10.772236 | 7 |
AGGTCGC | 3065 | 0.0 | 10.73225 | 6 |
ACCGTGA | 9570 | 0.0 | 10.655432 | 8 |
CTAGGCT | 8415 | 0.0 | 10.443849 | 4 |
CTAGTAC | 10900 | 0.0 | 10.3911495 | 3 |
ATACCGT | 6965 | 0.0 | 10.322706 | 6 |
GCGGATC | 8110 | 0.0 | 10.313888 | 7 |
TGATGGC | 15275 | 0.0 | 10.2774515 | 94 |
GCTGTCC | 7465 | 0.0 | 10.134897 | 8 |
GGCGGAT | 8880 | 0.0 | 10.107498 | 6 |