Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946293.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22055726 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 10555 | 0.0 | 13.981634 | 5 |
CATACAC | 50565 | 0.0 | 13.923497 | 3 |
CTATACT | 11170 | 0.0 | 13.885045 | 4 |
TATACCG | 7165 | 0.0 | 13.643747 | 5 |
ACACATG | 49920 | 0.0 | 13.256035 | 6 |
ACATGAC | 43755 | 0.0 | 13.190348 | 8 |
TATACAG | 9790 | 0.0 | 12.865855 | 5 |
CACATGA | 48490 | 0.0 | 12.716488 | 7 |
TCTATAC | 12845 | 0.0 | 12.696438 | 3 |
CATGACA | 45785 | 0.0 | 12.636313 | 9 |
GTGTATG | 49005 | 0.0 | 12.620999 | 1 |
GTATATA | 31805 | 0.0 | 12.357478 | 1 |
TAGGCTG | 6375 | 0.0 | 12.164389 | 5 |
TCATACA | 56685 | 0.0 | 12.154926 | 2 |
TATACTA | 19280 | 0.0 | 12.090971 | 5 |
ATCATAC | 52890 | 0.0 | 12.041013 | 1 |
GTATAGG | 7625 | 0.0 | 12.037423 | 1 |
TAATACT | 17170 | 0.0 | 11.797596 | 4 |
CTAGGCT | 5350 | 0.0 | 11.683807 | 4 |
GCCGTGC | 2540 | 0.0 | 11.65715 | 8 |