Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946372.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33070726 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10275 | 0.0 | 15.166582 | 5 |
CTAGTAC | 10040 | 0.0 | 14.868761 | 3 |
TATACTG | 17110 | 0.0 | 14.347729 | 5 |
CTATACT | 17890 | 0.0 | 14.326324 | 4 |
GTCGCGC | 1220 | 0.0 | 14.2349615 | 8 |
TCTATAC | 20820 | 0.0 | 14.227548 | 3 |
GTATAGG | 12305 | 0.0 | 13.288178 | 1 |
CATACAC | 84065 | 0.0 | 13.067184 | 3 |
TAGTACT | 18870 | 0.0 | 12.761389 | 4 |
GTGTATG | 80020 | 0.0 | 12.683031 | 1 |
TATACAG | 15520 | 0.0 | 12.581519 | 5 |
ACATGAC | 69680 | 0.0 | 12.535816 | 8 |
CCTATAC | 13040 | 0.0 | 12.492038 | 3 |
ACACATG | 85765 | 0.0 | 12.432115 | 6 |
GTATATA | 45485 | 0.0 | 12.40631 | 1 |
GTATAGA | 21780 | 0.0 | 12.404458 | 1 |
CATGACA | 69805 | 0.0 | 12.298144 | 9 |
GTACTAG | 12500 | 0.0 | 12.216342 | 1 |
CTAGGCT | 8420 | 0.0 | 12.041876 | 4 |
CACATGA | 83730 | 0.0 | 11.972656 | 7 |