FastQCFastQC Report
Tue 15 Nov 2016
SRR1946312.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946312.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20006150
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC223800.11186560132759177No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG74900.015.4979155
ATACCGT64700.014.671736
TACCGTG59200.014.52644357
CCGTGAG51250.014.3039249
TCTATAC126900.014.0014143
ACATGAC603900.013.0573388
CATACAC683100.012.840123
CATGACA626400.012.5507219
CTATACC102000.012.5345994
GTATAGA129200.012.4602511
ACACATG736100.012.3020966
CACATGA707700.012.2843577
CTAGTAC66700.012.1211643
ACCGTGA71450.011.9700768
TATACTG88650.011.8218175
TCATACA754150.011.7550822
GTGTATG663450.011.6855351
GTATAGG66900.011.4689761
CTATACT97200.011.4610344
ATCATAC762950.011.309141