FastQCFastQC Report
Tue 15 Nov 2016
SRR1946465.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946465.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34965026
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG167200.013.5824615
CTATACT177500.012.0285684
GTATAGA240900.010.8461631
TCTATAC223500.010.6473293
TAATACT332600.010.4208164
GTATTAG239850.09.9514911
ACCGTGC48500.09.8833218
GTATATA486000.09.8515511
CTAGTAC117100.09.8395863
ATACTGT213700.09.7211056
CATACAC668200.09.5367523
CAGTGCG26650.09.5251439
TATACAG185500.09.4797145
TATACCG122150.09.4691115
TAGTACT200600.09.400914
GTATTAT342200.09.3826251
TAGACTG80750.09.199885
CTAGACT91200.09.178714
GTATAAT314550.09.1597081
CCTATAC134600.09.1542743