FastQCFastQC Report
Tue 15 Nov 2016
SRR1946407.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946407.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44144832
Sequences flagged as poor quality0
Sequence length100
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTGAG95450.010.4909729
TATACCG138100.010.4511995
CTAGTAC170000.010.3704563
GTATAGA260550.010.2493631
ACATGAC1227300.010.2439168
CATACAC1444050.010.2226373
TAGACCG99100.010.1996725
ACACATG1405800.010.1933746
CACATGA1339850.09.8383647
GTATTAG219300.09.8189821
CATGACA1297850.09.667999
TGGACTT1234300.09.640355
GGACTTT1195800.09.5938596
TCATACA1535500.09.5131892
GTGTATG1352650.09.464591
GTATATA602850.09.3508171
ATGGACT1260700.09.281644
TATACTG208950.09.2699255
TATGGAC1296500.09.2575013
GTATAGG152900.09.2554731