Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946299.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35029022 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 16785 | 0.0 | 15.405802 | 5 |
TATACCG | 12355 | 0.0 | 14.4224615 | 5 |
CATACAC | 96335 | 0.0 | 13.953493 | 3 |
TCTATAC | 20825 | 0.0 | 13.772022 | 3 |
CTATACT | 17915 | 0.0 | 13.489392 | 4 |
ACATGAC | 72710 | 0.0 | 13.213902 | 8 |
ACACATG | 97485 | 0.0 | 12.996158 | 6 |
TATACAG | 16150 | 0.0 | 12.954792 | 5 |
TACCGTG | 8245 | 0.0 | 12.885075 | 7 |
CATGACA | 74515 | 0.0 | 12.602744 | 9 |
CTAGTAC | 10520 | 0.0 | 12.513973 | 3 |
CACATGA | 94075 | 0.0 | 12.502079 | 7 |
TCATACA | 107100 | 0.0 | 12.451324 | 2 |
GTGTATG | 90370 | 0.0 | 12.354966 | 1 |
CTGAGCG | 8120 | 0.0 | 12.286952 | 94 |
ATCATAC | 106520 | 0.0 | 12.1426 | 1 |
TAGTACT | 20155 | 0.0 | 11.990199 | 4 |
ATACCGT | 10625 | 0.0 | 11.946174 | 6 |
GTATATA | 52205 | 0.0 | 11.869756 | 1 |
CCGTGCG | 1830 | 0.0 | 11.814629 | 9 |