FastQCFastQC Report
Tue 15 Nov 2016
SRR1946423.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946423.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17220606
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC182740.10611705534636817No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG56050.015.363865
ATACCGT49300.014.1267496
CCGTGAG49700.013.8253389
TACCGTG44900.011.947647
TCTATAC100250.011.8749213
ACCGTGA66800.011.8355748
TATACTG82200.011.5639045
GTATAGA105900.011.3746641
CTATACT81200.010.952274
GTCGCGC7502.4938345E-910.6670478
GACCGTG34900.010.2473557
AGACCGT45700.010.1940416
TAGACCG46600.010.0980845
GTATATA259250.010.0913811
GTATTAG86850.09.9146151
TCGGGCA55450.09.82768494
GTGTTAG57100.09.8063061
CTAGTAC62850.09.6578183
CTAACGG66000.09.626018
GTACTAG83050.09.5184061