FastQCFastQC Report
Tue 15 Nov 2016
SRR1946373.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946373.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19295600
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG91100.014.5484045
TATACCG61700.013.5587455
GTCGCGC9550.013.2875548
CATACAC488200.012.7653153
TCTATAC114900.012.7620473
TATACAG86650.012.7462945
GTATAGA117400.012.1902981
TAGACCG46400.012.1548035
GTACTAG77700.012.1176351
CCGTGAG48650.012.0756869
ACACATG487950.011.9627486
ACATGAC362900.011.9147658
CTATACT96900.011.8345214
TAATACT148200.011.6069344
TAGTACT121050.011.5312484
TCATACA538800.011.4094822
GTATATA291550.011.38373851
CACATGA477050.011.3297047
ACCGTGA67300.011.3131778
CATGACA374750.011.2997249