FastQCFastQC Report
Tue 15 Nov 2016
SRR1946454.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946454.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38284010
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC17600.013.8866178
CTGAGCG102100.013.17834794
TATACCG130600.012.5620375
TATACTG174750.011.4865215
TCGCGCG22850.011.3129539
TGAGCGG105800.010.98327694
ATACCGT102400.010.4659386
AGACCGC53650.010.4351394
GTATTAG206000.010.388151
ACATGAC1214000.010.3448358
CATACAC1464400.010.1631653
ACACATG1443150.010.0449116
GTATATA558500.09.9285231
CATGACA1274750.09.9106879
GTATAGA233300.09.8781441
CACATGA1403600.09.8188317
GTATTAT293550.09.7733131
TCTATAC224950.09.7590763
GTATAGG129150.09.7232371
CTATACT188250.09.5390734