Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946277.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28663554 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1430 | 0.0 | 18.072958 | 8 |
TATACCG | 11095 | 0.0 | 14.48554 | 5 |
TATACTG | 14060 | 0.0 | 14.204945 | 5 |
TCGCGCG | 2000 | 0.0 | 14.096884 | 9 |
TCTATAC | 17820 | 0.0 | 13.373064 | 3 |
CATACAC | 67880 | 0.0 | 13.1634865 | 3 |
TACCGTG | 7890 | 0.0 | 12.983256 | 7 |
CTATACT | 14850 | 0.0 | 12.755845 | 4 |
GTATAGA | 19745 | 0.0 | 12.633338 | 1 |
GTGTATG | 65740 | 0.0 | 12.485794 | 1 |
CTAGTAC | 9915 | 0.0 | 12.467912 | 3 |
TAGACTG | 6865 | 0.0 | 12.321623 | 5 |
GCCGTGC | 2755 | 0.0 | 12.109866 | 8 |
ACACATG | 69810 | 0.0 | 12.055686 | 6 |
ACATGAC | 51495 | 0.0 | 11.899128 | 8 |
GTATAGG | 10250 | 0.0 | 11.892558 | 1 |
GTACTAG | 12060 | 0.0 | 11.824824 | 1 |
ATACCGT | 8525 | 0.0 | 11.74084 | 6 |
CTAGGCT | 7560 | 0.0 | 11.688712 | 4 |
CCGTGAG | 7250 | 0.0 | 11.666386 | 9 |