Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946429.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39871290 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 52645 | 0.1320373632255189 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 17975 | 0.0 | 11.239042 | 5 |
GTCGCGC | 2870 | 0.0 | 11.130084 | 8 |
CTAGTAC | 13305 | 0.0 | 10.912274 | 3 |
ACATGAC | 135900 | 0.0 | 10.781207 | 8 |
CATACAC | 171195 | 0.0 | 10.487154 | 3 |
ACACATG | 162990 | 0.0 | 10.4361315 | 6 |
TAGACCG | 9845 | 0.0 | 10.403286 | 5 |
TATACCG | 12225 | 0.0 | 10.337919 | 5 |
GTATATA | 55075 | 0.0 | 10.285113 | 1 |
CACATGA | 155625 | 0.0 | 10.25086 | 7 |
GACCGTG | 7825 | 0.0 | 10.145521 | 7 |
CATGACA | 142005 | 0.0 | 10.135778 | 9 |
TATACAG | 16780 | 0.0 | 10.051532 | 5 |
CTATACT | 18100 | 0.0 | 9.915945 | 4 |
CTAGGCT | 10720 | 0.0 | 9.905194 | 4 |
TCATACA | 181640 | 0.0 | 9.876366 | 2 |
GTATAGA | 21245 | 0.0 | 9.86858 | 1 |
TAGTACT | 23785 | 0.0 | 9.857045 | 4 |
GCTGTCC | 10440 | 0.0 | 9.674074 | 8 |
GTACTAG | 15850 | 0.0 | 9.63897 | 1 |