Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946462.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 32387644 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 36 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 16600 | 0.0 | 13.92929 | 5 |
TATACCG | 11550 | 0.0 | 13.509151 | 5 |
CTATACT | 17670 | 0.0 | 12.553864 | 4 |
TCTATAC | 22180 | 0.0 | 12.247278 | 3 |
TAGACCG | 7505 | 0.0 | 11.334434 | 5 |
GTATTAG | 25015 | 0.0 | 11.189111 | 1 |
GTATAGA | 23720 | 0.0 | 11.086035 | 1 |
CATACAC | 61600 | 0.0 | 10.894838 | 3 |
TAATACT | 33845 | 0.0 | 10.553367 | 4 |
GTATAGG | 12625 | 0.0 | 10.507438 | 1 |
CTAGTAC | 11140 | 0.0 | 10.420416 | 3 |
TAGGCCG | 2935 | 0.0 | 10.408237 | 5 |
ACTGTGC | 5600 | 0.0 | 10.322742 | 8 |
TACACAG | 10190 | 0.0 | 10.23884 | 5 |
ACACATG | 61465 | 0.0 | 10.215333 | 6 |
CCGTGAG | 7245 | 0.0 | 10.1846 | 9 |
ACATGAC | 50270 | 0.0 | 10.050267 | 8 |
CTGTGCA | 7500 | 0.0 | 10.026317 | 9 |
TATACAG | 20245 | 0.0 | 9.982117 | 5 |
CCGTGCG | 2545 | 0.0 | 9.972146 | 9 |