Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946445.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28295618 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 37744 | 0.13339167923457265 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGAGCGG | 10705 | 0.0 | 15.013667 | 94 |
CTGAGCG | 11280 | 0.0 | 14.456653 | 94 |
AGACCGG | 6505 | 0.0 | 13.726305 | 94 |
GACCGTG | 5575 | 0.0 | 10.62312 | 7 |
TAGACCG | 6680 | 0.0 | 10.48652 | 5 |
GTATAGA | 16785 | 0.0 | 10.364767 | 1 |
GGCTGGC | 5585 | 0.0 | 10.1809 | 82-83 |
TATACTG | 12560 | 0.0 | 10.106383 | 5 |
ACATGAC | 101775 | 0.0 | 9.938039 | 8 |
CATACAC | 122030 | 0.0 | 9.812545 | 3 |
ACACATG | 122145 | 0.0 | 9.809096 | 6 |
TCTGAGC | 19835 | 0.0 | 9.808791 | 94 |
GTATTAG | 14700 | 0.0 | 9.787759 | 1 |
TGGCGCG | 5490 | 0.0 | 9.758428 | 94 |
TATACCG | 8335 | 0.0 | 9.75803 | 5 |
AGACCGT | 6995 | 0.0 | 9.743504 | 6 |
AGGCGTG | 4795 | 0.0 | 9.703466 | 90-91 |
CACATGA | 118670 | 0.0 | 9.628761 | 7 |
CATGACA | 103675 | 0.0 | 9.501921 | 9 |
GTACTAG | 11540 | 0.0 | 9.493565 | 1 |