FastQCFastQC Report
Tue 15 Nov 2016
SRR1946272.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946272.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26492974
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG86000.014.4330525
TACCGTG68200.013.1635677
ATACCGT75000.012.4086696
TCTATAC166850.012.2865353
CCGTGAG56900.011.1515759
TATACTG125200.010.8529115
TATACAG118750.010.729725
CATACAC726700.010.6498583
ACATGAC585300.010.3591148
CTATACT128550.010.3513034
GTATATA389200.010.2663441
ACACATG722150.010.2056336
CATGACA610900.09.9789449
CACATGA696650.09.96530157
GTATAGA177100.09.752781
CTATACC130250.09.7469044
TAATACT203950.09.7059734
TCATACA804100.09.5824112
GTGTATA173450.09.5781441
GTATTAT209700.09.4934241