Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946435.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37354750 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 11685 | 0.0 | 11.580131 | 5 |
ATACCGT | 9870 | 0.0 | 11.041824 | 6 |
TCTATAC | 20430 | 0.0 | 11.016881 | 3 |
GTATAGA | 22540 | 0.0 | 10.741882 | 1 |
TATACTG | 17130 | 0.0 | 10.395166 | 5 |
ACATGAC | 111710 | 0.0 | 10.172215 | 8 |
CATACAC | 157170 | 0.0 | 10.078145 | 3 |
ACACATG | 150275 | 0.0 | 9.968683 | 6 |
GTATATA | 50785 | 0.0 | 9.905478 | 1 |
CTATACT | 18025 | 0.0 | 9.879384 | 4 |
CACATGA | 145770 | 0.0 | 9.777266 | 7 |
CATGACA | 115750 | 0.0 | 9.736022 | 9 |
TAGTACT | 22370 | 0.0 | 9.703802 | 4 |
GTACTAG | 14160 | 0.0 | 9.628571 | 1 |
CTAGTAC | 12310 | 0.0 | 9.542748 | 3 |
GTATTAG | 18520 | 0.0 | 9.494185 | 1 |
GTATTAT | 27390 | 0.0 | 9.474889 | 1 |
TATACAG | 16140 | 0.0 | 9.373505 | 5 |
TCATACA | 169130 | 0.0 | 9.368312 | 2 |
TAGGCTG | 10685 | 0.0 | 9.366013 | 5 |