Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946449.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40558418 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATACCGT | 14590 | 0.0 | 16.333698 | 6 |
TATACCG | 17180 | 0.0 | 16.11578 | 5 |
CCGTGAG | 12505 | 0.0 | 16.048395 | 9 |
TACCGTG | 14220 | 0.0 | 15.766881 | 7 |
ACCGTGA | 15580 | 0.0 | 14.570396 | 8 |
GTATAGA | 33400 | 0.0 | 14.039049 | 1 |
TCTATAC | 26480 | 0.0 | 13.33158 | 3 |
CTAGTAC | 18715 | 0.0 | 13.111138 | 3 |
CTGAGCG | 17405 | 0.0 | 12.920617 | 94 |
TGAGCGG | 16515 | 0.0 | 12.904733 | 94 |
CTATACC | 22690 | 0.0 | 12.367987 | 4 |
GTACTAC | 20405 | 0.0 | 11.886252 | 6 |
CCTAGTA | 21280 | 0.0 | 11.729932 | 2 |
AGACCGT | 10465 | 0.0 | 11.41889 | 94 |
TAGTACT | 39105 | 0.0 | 10.998867 | 4 |
TATACTG | 18300 | 0.0 | 10.531542 | 5 |
ACATGAC | 109555 | 0.0 | 10.407593 | 8 |
CATACAC | 152660 | 0.0 | 10.136646 | 3 |
ACACATG | 149375 | 0.0 | 10.122902 | 6 |
TAGAAGT | 35660 | 0.0 | 10.110513 | 4 |