FastQCFastQC Report
Tue 15 Nov 2016
SRR1946319.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946319.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26855142
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG132850.014.3675615
GAGCGCG12200.013.8712357
TACCGTG59650.013.8699447
TATACCG83400.013.8671635
CATACAC805400.013.8520353
GTGTATG761750.013.5754251
TCTATAC167400.013.4526413
CTATACT140500.013.4180394
ACATGAC610450.013.4137028
CCGTGAG59150.013.19125659
ACACATG780850.013.1304096
GATTGAG713350.013.1202177
CATGACA622800.013.101899
ATTGAGT771200.012.9948368
TTGAGTA751950.012.933159
GCGCGCC15450.012.7777289
GTACTAG94900.012.6914721
CACATGA738800.012.6809827
GTATAGA175350.012.529951
TCATACA888750.012.390182