FastQCFastQC Report
Tue 15 Nov 2016
SRR1946375.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946375.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34124720
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGAGCG86700.015.25206994
TATACCG110550.014.1617475
CTATACT179900.014.1123624
TATACTG169200.013.5041495
TCTATAC222850.013.1858353
TAATACT272850.012.3547034
TACCGTG86000.012.2433097
CATACAC792250.012.2189643
GTATAGA236800.012.1016531
ATACCGT109650.012.0468736
CCGTGAG84300.011.9871049
GTGTATG745400.011.7669961
CTAGTAC115700.011.7436943
ACCGTGA109950.011.7134338
GAGCGCG22500.011.6991627
ACACATG802150.011.4920796
TAGTACT213900.011.4075844
TGAGCGG93250.011.40515594
ATAATAC299450.011.3986283
TATACAG154400.011.2359675