Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946392.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28961538 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT | 30621 | 0.105729882163026 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGACCGG | 10210 | 0.0 | 13.396211 | 94 |
TATACCG | 10690 | 0.0 | 12.748175 | 5 |
CTGAGCG | 32305 | 0.0 | 12.497931 | 94 |
GTCGCGC | 1675 | 0.0 | 12.344104 | 8 |
TGAGCGG | 29700 | 0.0 | 12.280611 | 94 |
GTATAGA | 20480 | 0.0 | 11.545959 | 1 |
GAGCGGG | 24010 | 0.0 | 11.393195 | 94 |
ATACCGT | 9115 | 0.0 | 11.1356945 | 6 |
TCGCGCG | 2225 | 0.0 | 10.771145 | 9 |
CAGACCG | 9940 | 0.0 | 10.544812 | 92-93 |
GGCAGAC | 10270 | 0.0 | 10.52633 | 90-91 |
TATACTG | 12770 | 0.0 | 10.524533 | 5 |
GACCGGC | 6725 | 0.0 | 10.413787 | 94 |
TGATGGC | 35355 | 0.0 | 10.369515 | 94 |
GTATTAG | 14615 | 0.0 | 10.132199 | 1 |
TACCGTG | 8560 | 0.0 | 10.100998 | 7 |
GCGTGTA | 8935 | 0.0 | 10.073829 | 92-93 |
TCTGAGC | 43640 | 0.0 | 10.04874 | 94 |
TCTATAC | 18555 | 0.0 | 10.030484 | 3 |
GGCGTGT | 10165 | 0.0 | 9.825872 | 90-91 |