FastQCFastQC Report
Tue 15 Nov 2016
SRR1946417.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946417.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15216436
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC14400.016.3395218
TCGCGCG17500.013.1771029
TATACCG56050.011.9212875
GGTCGCG22300.011.8165887
ATACCGT39450.011.8085276
TAGGCGG52850.011.6632094
AGGTCGC23500.011.2131516
GTATAGA86200.011.190141
GCTGTCC50250.010.86318
CTATACT65700.010.7428054
GTATTAT100750.010.6015591
GCGGATC55300.010.3811067
ACATGAC471050.010.2497248
GGCGGAT59650.010.0973426
CTAGGCT51200.09.8334444
AGGCGGA59500.09.727445
ACACATG602650.09.6897856
CACATGA579400.09.6400927
CCGTGAG33300.09.610079
CATGACA505050.09.6069649