FastQCFastQC Report
Tue 15 Nov 2016
SRR1946349.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946349.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40022026
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG138250.015.4095295
GTCGCGC18250.015.1703228
TATACTG189650.014.9445455
CTAGTAC131900.014.6218453
TCTATAC241500.014.4758563
TACCGTG109650.014.2935557
CTAGGCT109500.013.5847064
GTATAGA268600.013.4991921
CTATACT194500.013.4381894
CATACAC1066450.013.1563633
GTATAGG149900.012.9089851
ATACCGT121400.012.7941596
CCGTGAG102850.012.3643329
ACATGAC854550.012.322288
ACACATG1077950.012.3150666
TAGTACT242000.012.2354274
TAGGCTG133600.012.222825
CTGTCCC134500.012.2110059
GCTGTCC110300.012.2098998
GTGTATG1013000.012.1799961