Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946325.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21613778 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 7495 | 0.0 | 15.361162 | 5 |
CTATACT | 11560 | 0.0 | 14.759747 | 4 |
TATACTG | 11480 | 0.0 | 14.4498205 | 5 |
CATACAC | 53640 | 0.0 | 14.248262 | 3 |
TCTATAC | 14235 | 0.0 | 13.901279 | 3 |
ACATGAC | 45185 | 0.0 | 13.685673 | 8 |
CCGTGAG | 4965 | 0.0 | 13.628427 | 9 |
TACCGTG | 5760 | 0.0 | 13.460742 | 7 |
ATACCGT | 6680 | 0.0 | 13.435891 | 6 |
ACACATG | 53805 | 0.0 | 13.3884115 | 6 |
CATGACA | 46365 | 0.0 | 13.1548815 | 9 |
GTGTATG | 50005 | 0.0 | 12.997759 | 1 |
CCGTGCG | 1715 | 0.0 | 12.877638 | 9 |
ACCGTGA | 6675 | 0.0 | 12.741831 | 8 |
CTAGTAC | 6650 | 0.0 | 12.72275 | 3 |
CACATGA | 51650 | 0.0 | 12.709651 | 7 |
GTATAGA | 14445 | 0.0 | 12.60903 | 1 |
TCATACA | 59755 | 0.0 | 12.557039 | 2 |
TAGTACT | 13755 | 0.0 | 12.233551 | 4 |
GATTGAG | 49270 | 0.0 | 12.150507 | 7 |