Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946401.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30360652 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT | 31658 | 0.10427312298826785 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTGAG | 6860 | 0.0 | 12.604239 | 9 |
TACCGTG | 7780 | 0.0 | 11.898916 | 7 |
TATACCG | 10040 | 0.0 | 11.7013035 | 5 |
ACCGTGA | 9645 | 0.0 | 11.205947 | 8 |
ATACCGT | 8030 | 0.0 | 11.060304 | 6 |
GTATAGA | 18995 | 0.0 | 10.616967 | 1 |
TCTATAC | 17110 | 0.0 | 10.437915 | 3 |
AGACCGT | 9100 | 0.0 | 10.278603 | 94 |
TATACTG | 13260 | 0.0 | 10.171062 | 5 |
GTACTAG | 13305 | 0.0 | 10.14027 | 1 |
TAGGCTG | 8710 | 0.0 | 9.819315 | 5 |
CTAGTAC | 10390 | 0.0 | 9.725302 | 3 |
GCTGGCA | 13410 | 0.0 | 9.673924 | 94 |
GCTGTCC | 7065 | 0.0 | 9.644479 | 8 |
CTAGGCT | 8160 | 0.0 | 9.503289 | 4 |
GTATTAG | 15440 | 0.0 | 9.468814 | 1 |
GTATATA | 42535 | 0.0 | 9.449355 | 1 |
ACATGAC | 99090 | 0.0 | 9.404069 | 8 |
GTCGCGC | 1525 | 0.0 | 9.244307 | 8 |
GTGTATG | 127800 | 0.0 | 9.070782 | 1 |