FastQCFastQC Report
Tue 15 Nov 2016
SRR1946420.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946420.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15794756
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT158120.10010917547570851No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG45150.011.1533375
GTATAGA86600.010.9770251
ATACCGT41800.010.2457866
GCGTGTA128350.010.02856494
TAGGCCG16950.09.9956635
GGCAGAC140350.09.84054194
GTATTAG82050.09.750381
ACACATG663500.09.7176176
ACATGAC489200.09.6979618
CATACAC659600.09.6245963
CTAGTAC49950.09.6098343
TATACAG65150.09.4631485
CTATACT75250.09.4433144
AGGCGTG158100.09.41914594
GTATATA210450.09.4142211
CACATGA634350.09.3999697
ACTGTGC27100.09.3784468
CCGTTCA93200.09.37521294
GGCGTGT145350.09.3727594
GATTGAG576600.09.2640317