FastQCFastQC Report
Tue 15 Nov 2016
SRR1946315.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946315.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24862270
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG115400.013.6017055
CATACAC584400.013.3844263
CTATACT123800.013.1754494
GTCGCGC14200.012.9059138
ACATGAC468150.012.707538
ACACATG582250.012.6308646
CATGACA486400.012.1341039
GTGTATG564200.012.0293261
TCTATAC146800.011.9437143
CACATGA556400.011.92511757
TAGACCG54450.011.7379885
TCATACA659500.011.6632942
TATACCG71100.011.6331075
TATACAG106950.011.5565345
ATCATAC644600.011.273691
GTATATA341400.011.2633531
GTATTAT194150.011.1271631
TACACTG73950.011.12122255
GTACTAG84800.011.1005191
TAATACT193150.011.097544