Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946344.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38744730 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGTAC | 13285 | 0.0 | 15.011933 | 3 |
CATACAC | 94985 | 0.0 | 13.67478 | 3 |
TATACCG | 11430 | 0.0 | 13.671043 | 5 |
TATACTG | 20145 | 0.0 | 13.37052 | 5 |
GTACTAG | 16665 | 0.0 | 13.358077 | 1 |
CTATACT | 20100 | 0.0 | 13.307243 | 4 |
TATACAG | 18715 | 0.0 | 13.013113 | 5 |
ACATGAC | 81745 | 0.0 | 12.761166 | 8 |
GACCGTG | 7285 | 0.0 | 12.689574 | 7 |
ACACATG | 97630 | 0.0 | 12.660251 | 6 |
TGTAGGG | 17330 | 0.0 | 12.536911 | 2 |
CATGACA | 83215 | 0.0 | 12.445513 | 9 |
GTATAGG | 13285 | 0.0 | 12.267013 | 1 |
ACCGTGC | 4565 | 0.0 | 12.232584 | 8 |
TCTATAC | 23380 | 0.0 | 12.203049 | 3 |
CACATGA | 94665 | 0.0 | 12.164535 | 7 |
GTGTATG | 90485 | 0.0 | 12.124593 | 1 |
TAGACCG | 10310 | 0.0 | 12.06121 | 5 |
TCATACA | 106430 | 0.0 | 11.939682 | 2 |
CCTAGTA | 15060 | 0.0 | 11.9338875 | 2 |