Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946320.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20969754 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 10760 | 0.0 | 15.331323 | 5 |
TATACCG | 6885 | 0.0 | 14.130294 | 5 |
CATACAC | 49965 | 0.0 | 13.704982 | 3 |
TAGACTG | 5095 | 0.0 | 13.375456 | 5 |
GTGTATG | 48785 | 0.0 | 13.014921 | 1 |
ACATGAC | 37435 | 0.0 | 12.981578 | 8 |
CTATACT | 11120 | 0.0 | 12.975329 | 4 |
ACACATG | 50775 | 0.0 | 12.755105 | 6 |
CATGACA | 38485 | 0.0 | 12.590761 | 9 |
TCTATAC | 13135 | 0.0 | 12.344508 | 3 |
GTATAGA | 13265 | 0.0 | 12.312269 | 1 |
TATACAG | 9490 | 0.0 | 12.13346 | 5 |
CACATGA | 48255 | 0.0 | 12.1161 | 7 |
GTCGCGC | 740 | 1.2732926E-11 | 12.067204 | 8 |
TAGACCG | 4980 | 0.0 | 11.985583 | 5 |
TCATACA | 56405 | 0.0 | 11.956999 | 2 |
GATTGAG | 47615 | 0.0 | 11.785427 | 7 |
TAGTACT | 11670 | 0.0 | 11.759715 | 4 |
GTATTAT | 17225 | 0.0 | 11.722331 | 1 |
GTATATA | 31385 | 0.0 | 11.66738 | 1 |