FastQCFastQC Report
Tue 15 Nov 2016
SRR1946323.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946323.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45302166
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG222550.016.2874835
CTATACT232700.015.9812294
TATACCG142900.015.79196555
TCTATAC278100.014.7417613
CATACAC1134350.013.8679663
ACATGAC850700.013.3930888
ACACATG1106900.013.27986
TACCGTG111350.013.0440947
GTATAGA301350.012.9746521
CATGACA865000.012.9371649
GTGTATG1062550.012.9034581
TATACAG192800.012.8752025
TAGGCTG134050.012.6960595
CACATGA1069450.012.6891337
TAATACT350000.012.3983454
TCATACA1286450.012.2845812
ATCATAC1265100.012.03881551
GTATAGG160750.011.9419461
CTAGGCT109150.011.9312534
CCTATAC167500.011.7887673