Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946351.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 48302974 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 16645 | 0.0 | 16.753845 | 5 |
TCTATAC | 31880 | 0.0 | 15.109602 | 3 |
TATACTG | 25295 | 0.0 | 14.885093 | 5 |
CTATACT | 25075 | 0.0 | 14.566749 | 4 |
CATACAC | 114380 | 0.0 | 14.440084 | 3 |
CTAGTAC | 15925 | 0.0 | 14.091994 | 3 |
ATACCGT | 15210 | 0.0 | 14.075611 | 6 |
TACCGTG | 13235 | 0.0 | 13.941794 | 7 |
GTATAGA | 34350 | 0.0 | 13.854531 | 1 |
GTCGCGC | 1740 | 0.0 | 13.761837 | 8 |
TATACAG | 22235 | 0.0 | 13.470862 | 5 |
ACACATG | 113100 | 0.0 | 13.458047 | 6 |
ACATGAC | 93050 | 0.0 | 13.260639 | 8 |
CATGACA | 93585 | 0.0 | 12.91391 | 9 |
TAGTACT | 31235 | 0.0 | 12.821284 | 4 |
TCATACA | 127740 | 0.0 | 12.673451 | 2 |
CACATGA | 108570 | 0.0 | 12.57577 | 7 |
ACTGTGC | 7395 | 0.0 | 12.571365 | 8 |
GTATATA | 67315 | 0.0 | 12.54836 | 1 |
ATCATAC | 125640 | 0.0 | 12.33943 | 1 |