FastQCFastQC Report
Tue 15 Nov 2016
SRR1946288.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946288.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25266048
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG119600.012.0290835
GTCGCGC8451.5097612E-1010.5692158
CATACAC712700.010.153033
GTATTAG144400.010.0374831
ACTGTGC37950.010.0327288
ACATGAC544350.09.947648
GTATATA385350.09.8794881
TCTATAC149250.09.8603843
GTATAGA162300.09.8292971
ACACATG712050.09.6972876
CTATACT126200.09.5752214
CACATGA680600.09.5656967
CTAGTAC77050.09.5195363
CATGACA562950.09.4770599
TATACAG116850.09.3749625
GTACTAG86200.09.2807471
ATACTGT135450.09.2655516
TATACCG76700.09.2560115
GTGTATG677850.09.1014461
GACCGTG39400.08.9479557