FastQCFastQC Report
Tue 15 Nov 2016
SRR1946451.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946451.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36553776
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC430960.11789753266529839No Hit
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT372380.10187182850822307No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGAGCGG105050.016.03204294
CTGAGCG115850.015.63387194
CCGTGAG108250.012.6345679
TATACCG104600.012.1343985
GTATAGA220800.011.8216491
CTAGTAC151100.010.9201563
TAGACCG98000.010.7930125
ACATGAC1470700.010.7506548
ACCGTGA142250.010.7382648
GACCGTG84750.010.7042217
TACCGTG81100.010.6643527
TATACTG156750.010.5565335
ATACCGT96300.010.4943376
AGACCGG77350.010.46092294
CACATGA1794900.010.2996197
CATACAC1896800.010.2802443
ACACATG1850550.010.2795766
CATGACA1538750.010.2658699
GTACTAG200700.09.9826621
AGACCGT101950.09.9588546