FastQCFastQC Report
Tue 15 Nov 2016
SRR1946356.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946356.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31816972
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG109250.016.2438055
CTATACT166200.014.2938054
TCTATAC200350.014.0132913
CATACAC989750.013.699353
ACATGAC711150.013.6344318
TATACTG174450.013.5367515
TATACAG148600.013.3640775
GTCGCGC11650.013.3004458
TACCGTG85450.013.2425277
ATACCGT96950.013.2206476
CATGACA724950.013.2194419
ACACATG925050.012.988026
GTACTAG135800.012.9391581
GTATAGA215800.012.8232481
CACATGA892150.012.76787957
CCGTGAG79650.012.5565989
CTAGTAC104550.012.5287713
TCATACA1095900.012.2966772
GTATATA460800.012.2553631
ATCATAC1083550.012.0583041