FastQCFastQC Report
Tue 15 Nov 2016
SRR1946403.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946403.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31963428
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTGAG93350.013.74922859
CTAGTAC148400.013.14672853
TATACCG101050.012.3285615
GACCGTG71150.012.0870417
ACCGTGA120150.011.81333358
ATACCGT85750.011.4548276
TACCGTG74000.011.3675037
CCTAGTA159250.011.3363622
GTACTAC159600.010.9543466
TAGACCG95100.010.6776595
TATACTG146650.010.6428735
TCTATAC182650.010.5785383
AGACCGT93700.010.5330966
GTATAGA203700.010.5246071
GTACTAG182800.010.4933961
TAGTACT288750.010.3055614
TATACAG136850.09.9278655
CATACAC1040900.09.9135463
GTATTAG172150.09.8589861
CTATACT149500.09.716444