FastQCFastQC Report
Tue 15 Nov 2016
SRR1946273.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946273.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37055772
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG132050.014.7775985
TACCGTG96400.014.1410937
CCGTGAG82550.013.2673229
ATACCGT115450.012.9476016
TCTATAC230950.012.338853
CTATACT180900.011.6977944
GTATAGA251250.011.6496181
ACCGTGA116000.011.4270718
TATACTG178800.011.045265
GTCGCGC13350.010.9150138
CTAGTAC111050.010.8403033
CATACAC1165150.010.5659323
ACATGAC908950.010.3323558
CTATACC178250.010.2888084
ACACATG1178600.010.1821756
TAGTACT223150.010.1784174
CACATGA1143900.09.8501317
CATGACA950850.09.8078569
TCATACA1288300.09.6491562
GTATATA548800.09.6464121