FastQCFastQC Report
Tue 15 Nov 2016
SRR1946298.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946298.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19859124
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT104100.015.48543554
TATACTG99450.014.4136885
CATACAC553350.014.3967353
TATACCG64350.014.387915
ACATGAC439350.014.1416758
ACACATG543850.013.9477596
GTGTATG516250.013.7312221
CATGACA453400.013.682729
CACATGA525600.013.4305747
GTATAGA129650.013.3604021
GAGCGCG11300.013.3091887
TCATACA612200.012.744322
TATACAG91150.012.7356265
TCTATAC119650.012.6484543
CCGTGCG11000.012.3904019
TACCGTG42900.012.3794457
ATCATAC588800.012.3430851
GATTGAG487100.012.2825997
GTATATA288000.012.2414691
GTATTAG121650.012.2269811