FastQCFastQC Report
Tue 15 Nov 2016
SRR1946382.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946382.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24294628
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC17050.011.8517798
AGACCGT86350.011.4855794
TATACCG81450.010.7892635
GCTGTCC63150.010.6414838
GCGTGTA60350.010.24199492-93
TAGGCGG59900.010.2020914
TAGACCG62800.09.9525255
ACATGAC677650.09.9237018
GTATAGA140050.09.9056161
AGGCGTG63100.09.83287790-91
TATACTG107700.09.7303945
CTAGGCT70600.09.7212214
TAGGCTG74100.09.6397695
CATACAC809150.09.6204023
CCGTGAG48400.09.6123649
GTGTATG779500.09.5681871
GTATATA352900.09.4879181
CTAGTAC84000.09.4573483
ACACATG788700.09.4381016
GCCGTGC20450.09.4217168