FastQCFastQC Report
Tue 15 Nov 2016
SRR1946281.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946281.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42054074
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG138150.014.360045
CTGAGCG110900.013.36659294
TATACTG203300.013.18049055
CTAGTAC128900.013.0928313
TACCGTG102900.013.0654737
CTATACT212200.012.893514
TCTATAC260050.012.8349313
CATACAC1166500.012.5776963
ATACCGT121950.012.5665916
GTATAGA282400.012.4767091
ACATGAC867950.012.1908388
TAGTACT251550.012.0913154
ACACATG1107250.011.9725076
GTATAGG139400.011.9122811
TATACAG194050.011.7980275
CATGACA896050.011.7499649
GTACTAG151800.011.713941
GTGTATG1125550.011.5686921
CACATGA1055800.011.31796557
TCATACA1291900.011.0524762