Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946341.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 47479116 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 14070 | 0.0 | 15.708944 | 5 |
TATACTG | 23695 | 0.0 | 14.477076 | 5 |
CTATACT | 23775 | 0.0 | 13.717959 | 4 |
TCTATAC | 27845 | 0.0 | 13.583542 | 3 |
CATACAC | 137340 | 0.0 | 13.400955 | 3 |
CTAGTAC | 15555 | 0.0 | 13.183681 | 3 |
GTATAGA | 29685 | 0.0 | 12.958331 | 1 |
GTATAGG | 15590 | 0.0 | 12.864236 | 1 |
TATACAG | 21650 | 0.0 | 12.810019 | 5 |
ACATGAC | 105020 | 0.0 | 12.7798195 | 8 |
ACACATG | 137445 | 0.0 | 12.752293 | 6 |
CTAGGCT | 12090 | 0.0 | 12.49841 | 4 |
ATACCGT | 13305 | 0.0 | 12.450489 | 6 |
CATGACA | 107040 | 0.0 | 12.336975 | 9 |
TAGACCG | 11190 | 0.0 | 12.329271 | 5 |
CACATGA | 133030 | 0.0 | 12.325368 | 7 |
GTGTATG | 132450 | 0.0 | 12.234025 | 1 |
GTATATA | 65950 | 0.0 | 12.185335 | 1 |
TACCGTG | 11505 | 0.0 | 12.114246 | 7 |
TCATACA | 150500 | 0.0 | 12.007767 | 2 |