Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946313.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27378950 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10130 | 0.0 | 13.735412 | 5 |
GTCGCGC | 1580 | 0.0 | 13.681361 | 8 |
TACCGTG | 7450 | 0.0 | 12.362992 | 7 |
TCTATAC | 17865 | 0.0 | 12.103591 | 3 |
TCGCGCG | 1945 | 0.0 | 11.838771 | 9 |
ATACCGT | 8485 | 0.0 | 11.797146 | 6 |
CCGTGAG | 5925 | 0.0 | 11.421003 | 9 |
GTATAGA | 19330 | 0.0 | 10.972464 | 1 |
AGGTCGC | 2485 | 0.0 | 10.779476 | 6 |
CTATACT | 13555 | 0.0 | 10.680968 | 4 |
TATACTG | 13300 | 0.0 | 10.6383505 | 5 |
TATACAG | 11940 | 0.0 | 10.55091 | 5 |
GTATAGG | 10300 | 0.0 | 10.318835 | 1 |
CTATACC | 14055 | 0.0 | 10.167219 | 4 |
GTATATA | 39030 | 0.0 | 10.085242 | 1 |
CATACAC | 73865 | 0.0 | 9.9403515 | 3 |
ACCGTGA | 8030 | 0.0 | 9.890079 | 8 |
ACATGAC | 58415 | 0.0 | 9.862674 | 8 |
ACACATG | 73870 | 0.0 | 9.689046 | 6 |
GTGTATG | 71375 | 0.0 | 9.560503 | 1 |