FastQCFastQC Report
Tue 15 Nov 2016
SRR1946364.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946364.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32315372
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG112600.016.4244695
CTAGTAC114450.015.0527813
ATACCGT107400.014.1567216
CCGTGAG85900.013.98702059
TATACTG165150.013.784685
TCTATAC213750.013.5282343
TACCGTG81750.013.4902557
CTATACT166300.013.3230034
GTATAGA230500.013.2278921
ACCGTGA113200.013.0186418
GAGCGCG18400.012.752417
CTATACC165350.012.6614384
CATACAC874550.012.5065563
GTATAGG112450.012.2830091
GTACTAC130550.012.1136496
TAGTACT230350.012.0230914
CCTAGTA129250.012.0227252
TATACAG154950.011.9354325
TAGGCTG94950.011.6173335
ACACATG874950.011.5419986