Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946385.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21575790 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGG | 9940 | 0.0 | 14.848557 | 94 |
AGACCGG | 6470 | 0.0 | 14.457388 | 94 |
CTGAGCG | 13650 | 0.0 | 14.290797 | 94 |
GTCGCGC | 1100 | 0.0 | 13.670505 | 8 |
TGAGCGG | 12525 | 0.0 | 13.5103245 | 94 |
GATGGCG | 11140 | 0.0 | 11.898849 | 94 |
TGATGGC | 15755 | 0.0 | 11.695227 | 94 |
TATACCG | 7215 | 0.0 | 11.072506 | 5 |
ATACCGT | 6580 | 0.0 | 11.069706 | 6 |
TCGCGCG | 1360 | 0.0 | 11.057103 | 9 |
GGCAGAC | 5625 | 0.0 | 10.946865 | 90-91 |
GTATAGA | 14340 | 0.0 | 10.919436 | 1 |
TATACTG | 9860 | 0.0 | 10.580577 | 5 |
GGCGTGT | 5145 | 0.0 | 10.506389 | 90-91 |
CCGTGAG | 5280 | 0.0 | 10.32415 | 9 |
CTAGTAC | 8135 | 0.0 | 10.169324 | 3 |
CATACAC | 78820 | 0.0 | 9.893432 | 3 |
AGGCGTG | 4485 | 0.0 | 9.851592 | 90-91 |
TCTATAC | 12915 | 0.0 | 9.82667 | 3 |
ACACATG | 78030 | 0.0 | 9.774335 | 6 |