FastQCFastQC Report
Tue 15 Nov 2016
SRR1946355.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946355.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38735564
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG202000.014.17627055
TATACCG122300.014.0103815
GAGCGCG20100.013.3136677
GTCGCGC17000.013.25626858
CTATACT208000.013.1582374
CATACAC996250.013.076373
TATACAG178400.012.5255175
TCTATAC238950.012.455893
ACATGAC746200.012.3130198
ACACATG1025850.012.2922216
CTAGGCT106050.012.1734734
GTATAGG147350.012.0182931
CATGACA764000.011.9524029
CACATGA985950.011.8185927
GTATATA541250.011.768291
TCATACA1112500.011.575692
GTGTATG944100.011.5480531
ATCATAC1074500.011.5455231
CCGTGCG23200.011.5349539
TAGGCTG131450.011.4637845