FastQCFastQC Report
Tue 15 Nov 2016
SRR1946381.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946381.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26628636
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGG94850.015.0650494
GTCGCGC15800.014.8711388
CTGAGCG269800.012.89210494
TGAGCGG246500.011.99410294
TCGCGCG21550.011.3393729
GTATAGA157550.010.8053271
TCTGAGC369250.010.29821894
GTATTAG135700.010.1886191
GCGTGTA76850.010.00029592-93
GGCGTGT87250.09.99347690-91
TAGGCGG68600.09.9362754
GAGCGGG204550.09.8350994
AGGCGTG79500.09.75562190-91
TATACCG81550.09.6809745
AGCGGGC166450.09.48832594
TGATGGC289200.09.41053594
CTGATGG359200.09.39554994
GGCAGAC91650.09.38548590-91
TATACTG121600.09.3522375
CAGACCG92550.09.34502292-93