Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946287.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35748986 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 12925 | 0.0 | 15.458017 | 5 |
TCTATAC | 22570 | 0.0 | 14.475942 | 3 |
TATACTG | 17240 | 0.0 | 13.961373 | 5 |
TACCGTG | 9270 | 0.0 | 13.590382 | 7 |
CCGTGAG | 8575 | 0.0 | 13.484108 | 9 |
CATACAC | 96675 | 0.0 | 13.328719 | 3 |
ATACCGT | 11210 | 0.0 | 13.293332 | 6 |
ACATGAC | 77380 | 0.0 | 13.255141 | 8 |
GTCGCGC | 1705 | 0.0 | 13.233514 | 8 |
CTAGTAC | 11990 | 0.0 | 13.213087 | 3 |
CTATACT | 18715 | 0.0 | 13.137334 | 4 |
GTATAGA | 23905 | 0.0 | 13.087315 | 1 |
CATGACA | 79310 | 0.0 | 12.783315 | 9 |
ACACATG | 98100 | 0.0 | 12.722596 | 6 |
GTGTATG | 92170 | 0.0 | 12.586967 | 1 |
ACCGTGA | 11855 | 0.0 | 12.2522335 | 8 |
CACATGA | 94735 | 0.0 | 12.241518 | 7 |
TATACAG | 16420 | 0.0 | 12.196406 | 5 |
GTACTAG | 14195 | 0.0 | 12.130071 | 1 |
ACTGTGC | 5290 | 0.0 | 11.995998 | 8 |