Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946307.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 32657188 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 11560 | 0.0 | 14.601358 | 5 |
CCGTGAG | 7080 | 0.0 | 13.477483 | 9 |
TACCGTG | 9600 | 0.0 | 13.171576 | 7 |
ATACCGT | 9975 | 0.0 | 13.052856 | 6 |
TCTATAC | 19940 | 0.0 | 12.56842 | 3 |
ACCGTGA | 10480 | 0.0 | 11.4372835 | 8 |
TATACTG | 14860 | 0.0 | 11.137315 | 5 |
TAGGCGG | 7375 | 0.0 | 10.711244 | 4 |
CTAGTAC | 9975 | 0.0 | 10.605917 | 3 |
GTATAGA | 20995 | 0.0 | 10.535586 | 1 |
CTATACC | 16025 | 0.0 | 10.4458685 | 4 |
GTCGCGC | 1560 | 0.0 | 10.2446785 | 8 |
CATACAC | 97130 | 0.0 | 9.957712 | 3 |
GTATATA | 49820 | 0.0 | 9.8149605 | 1 |
GCTGTCC | 8145 | 0.0 | 9.753032 | 8 |
CTATACT | 16065 | 0.0 | 9.746668 | 4 |
GTCTAGG | 6880 | 0.0 | 9.71352 | 1 |
TAGGCTG | 10070 | 0.0 | 9.618213 | 5 |
TCGCGCG | 1835 | 0.0 | 9.47789 | 9 |
ACATGAC | 69500 | 0.0 | 9.448342 | 8 |