Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946300.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 17671112 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 20254 | 0.11461644292673828 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 8995 | 0.0 | 16.614264 | 5 |
TATACCG | 6160 | 0.0 | 16.402607 | 5 |
CTATACT | 9450 | 0.0 | 16.364595 | 4 |
GTCGCGC | 970 | 0.0 | 15.987032 | 8 |
ACATGAC | 44175 | 0.0 | 15.435349 | 8 |
CATACAC | 55100 | 0.0 | 15.039793 | 3 |
TAGGCTG | 5510 | 0.0 | 14.925936 | 5 |
GTGTATG | 50040 | 0.0 | 14.8549595 | 1 |
CATGACA | 45675 | 0.0 | 14.743251 | 9 |
ACACATG | 55590 | 0.0 | 14.683722 | 6 |
CACATGA | 52660 | 0.0 | 14.510012 | 7 |
GATTGAG | 46010 | 0.0 | 14.35001 | 7 |
TAGTACT | 9930 | 0.0 | 14.153476 | 4 |
TTGAGTA | 50275 | 0.0 | 14.011196 | 9 |
ATTGAGT | 50495 | 0.0 | 13.940845 | 8 |
TCATACA | 59775 | 0.0 | 13.635488 | 2 |
CTAGGCT | 5340 | 0.0 | 13.467635 | 4 |
ACAGTGC | 3075 | 0.0 | 13.44817 | 8 |
TCTATAC | 11155 | 0.0 | 13.441949 | 3 |
GCCGTGC | 1695 | 0.0 | 13.307522 | 8 |