FastQCFastQC Report
Tue 15 Nov 2016
SRR1946294.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946294.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38564898
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC406210.10533153750335343No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGC58250.021.5756294
TGAGCGG135400.018.042594
CTGAGCG142150.017.68244794
TATACTG191750.015.4448755
ACATGAC1003050.015.3755338
CATACAC1280200.015.3415723
CTATACT200400.015.2942824
ACACATG1264550.015.0142476
CATGACA1020750.014.8636999
CACATGA1224700.014.6044827
TCTATAC234700.013.9404053
TCATACA1402950.013.9275992
ATCATAC1353300.013.6963161
TATACCG116450.013.6848335
GTATAGA248900.013.5706641
GTGTATG1192450.013.5515231
TATACAG178300.013.4988845
GTATATA543150.013.0352181
GATTGAG1098100.013.0263057
TGATGGC199850.012.67144494