FastQCFastQC Report
Tue 15 Nov 2016
SRR1946461.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946461.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18700782
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG98300.014.3426685
CTATACT103150.013.9416574
TATACCG67850.013.4373645
TCTATAC128100.012.7671013
TACCGTG49000.011.8929657
TAGGCCG21500.011.5850965
TAGACTG44950.011.5007245
GTATATA268750.011.4285341
GTATAGG70700.011.3763391
CCGTGCG14700.011.1897969
TATACAG99750.011.1188865
CATACAC390200.011.0805873
GTGTATG376350.011.0355651
TACACTG57500.011.0338775
CTGTGCA40500.011.0240229
GTATTAG137700.010.9647041
CCGTGAG40700.010.8543789
ACATGAC330450.010.7660928
ACCGTGA55350.010.6984528
GTATAGA135200.010.645611