Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946428.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35686792 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1900 | 0.0 | 13.8453865 | 8 |
GTATAGA | 21890 | 0.0 | 11.940829 | 1 |
TATACCG | 12455 | 0.0 | 11.429744 | 5 |
CGCCGTA | 5770 | 0.0 | 10.857377 | 94 |
TATACTG | 16245 | 0.0 | 10.469512 | 5 |
ACATGAC | 109925 | 0.0 | 10.410017 | 8 |
CTAGGCT | 10510 | 0.0 | 10.281993 | 4 |
GTATATA | 47250 | 0.0 | 10.2679405 | 1 |
CTATACT | 16315 | 0.0 | 10.223355 | 4 |
CATACAC | 139320 | 0.0 | 10.178366 | 3 |
TATACAG | 14645 | 0.0 | 10.0734415 | 5 |
TCGCGCG | 2705 | 0.0 | 10.072321 | 9 |
ACACATG | 139040 | 0.0 | 10.014049 | 6 |
CATGACA | 115230 | 0.0 | 9.971482 | 9 |
CACATGA | 134665 | 0.0 | 9.948692 | 7 |
TCTATAC | 20125 | 0.0 | 9.875902 | 3 |
GCTGTCC | 9420 | 0.0 | 9.873814 | 8 |
GTATTAG | 18350 | 0.0 | 9.530426 | 1 |
GTGTATG | 133430 | 0.0 | 9.491821 | 1 |
CTGTCCC | 11925 | 0.0 | 9.454132 | 9 |