FastQCFastQC Report
Tue 15 Nov 2016
SRR1946380.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946380.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32726892
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTGAG84350.013.8722819
TATACCG108500.012.3006345
TACCGTG79250.011.9780217
ATACCGT85050.011.8243626
CTAGTAC136850.011.4036813
TAGACCG82600.011.2648155
ACCGTGA119000.011.2546218
GTATAGA206700.010.8291281
TCTATAC174800.010.5682453
AGACCGT85450.010.3941276
GACCGTG69250.010.3825647
GTATTAG160200.010.0977111
GTCGCGC17600.09.8792058
GTACTAC143950.09.8590156
CCTAGTA147900.09.7919322
AGCGGGC236350.09.526294
GTACTAG174550.09.3753261
CTATACT145250.09.3527954
AGACCGA142700.09.19009694
ACATGAC1051350.09.1675078