FastQCFastQC Report
Tue 15 Nov 2016
SRR1946450.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946450.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28298060
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT339230.1198774756997476No Hit
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC314880.11127264554531299No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGC35450.015.92534194
GTCGCGC15450.014.601578
CTGAGCG102450.013.50078794
TATACCG97700.013.3758285
TGAGCGG102700.013.19306894
TCGCGCG19650.011.9588359
GTATAGA183550.011.1463681
ATACCGT80250.010.71843056
TATACTG129200.010.6968355
CATACAC1126800.010.3877853
ACATGAC996950.010.3855128
TCTATAC162500.010.2694093
ACACATG1200800.010.2554756
CACATGA1154650.010.1280897
CTAGTAC99250.010.0409743
CATGACA1036400.09.9900699
GTATATA411200.09.962391
CCGTGAG57350.09.8339799
GTATTAT270450.09.7734491
TAGGCGG74650.09.7605074