Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946386.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21986840 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1645 | 0.0 | 13.141044 | 8 |
AGACCGT | 7870 | 0.0 | 12.363437 | 94 |
TATACCG | 6825 | 0.0 | 12.187356 | 5 |
CTGAGCG | 22140 | 0.0 | 10.742776 | 94 |
TCTATAC | 12010 | 0.0 | 10.489127 | 3 |
GTATAGA | 13660 | 0.0 | 10.430675 | 1 |
GGCAGAC | 6700 | 0.0 | 10.207838 | 90-91 |
CTATACT | 10525 | 0.0 | 10.18287 | 4 |
CAGACCG | 7130 | 0.0 | 10.053722 | 92-93 |
TCGCGCG | 2130 | 0.0 | 9.928229 | 9 |
CTAGTAC | 8200 | 0.0 | 9.802341 | 3 |
ATACCGT | 6180 | 0.0 | 9.733306 | 6 |
GTATTAT | 16230 | 0.0 | 9.619225 | 1 |
ACATGAC | 64055 | 0.0 | 9.530024 | 8 |
GGCGTGT | 6745 | 0.0 | 9.512536 | 90-91 |
GCGAGGG | 11375 | 0.0 | 9.462975 | 94 |
TACCGTG | 6325 | 0.0 | 9.361553 | 7 |
GTATATA | 29505 | 0.0 | 9.3554125 | 1 |
AGCGGGC | 15500 | 0.0 | 9.279687 | 94 |
GCGTGTA | 5985 | 0.0 | 9.267539 | 92-93 |