Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946332.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 53635328 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 27720 | 0.0 | 14.863379 | 5 |
CTATACT | 28860 | 0.0 | 14.097866 | 4 |
GTCGCGC | 2155 | 0.0 | 13.952394 | 8 |
TCTATAC | 33785 | 0.0 | 13.336027 | 3 |
CTAGGCT | 14655 | 0.0 | 13.015835 | 4 |
CATACAC | 124635 | 0.0 | 12.831615 | 3 |
TATACAG | 25420 | 0.0 | 12.678263 | 5 |
TATACCG | 16745 | 0.0 | 12.456871 | 5 |
GCTGTCC | 14610 | 0.0 | 12.155074 | 8 |
GTATATA | 77345 | 0.0 | 12.138562 | 1 |
TAGGCTG | 17695 | 0.0 | 12.080141 | 5 |
ACACATG | 126270 | 0.0 | 11.931976 | 6 |
ACATGAC | 92800 | 0.0 | 11.58308 | 8 |
GTGTATG | 117875 | 0.0 | 11.494596 | 1 |
CTGTCCC | 17555 | 0.0 | 11.454048 | 9 |
TCATACA | 137500 | 0.0 | 11.432865 | 2 |
GTATAGG | 20310 | 0.0 | 11.411912 | 1 |
CACATGA | 121140 | 0.0 | 11.394107 | 7 |
GTATAGA | 34650 | 0.0 | 11.342908 | 1 |
GAGCGCG | 3120 | 0.0 | 11.293348 | 7 |