FastQCFastQC Report
Tue 15 Nov 2016
SRR1946463.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946463.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51902748
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG262900.013.1925385
TATACCG186350.013.1644795
CTATACT278450.012.7764814
CCGTGAG143450.011.7944459
CATACAC1409600.011.512333
ATACCGT171000.011.3230566
ACATGAC1139500.011.1727648
TCTATAC338400.011.1102093
ACACATG1401250.011.0376056
GTCGCGC32900.010.9991918
GTATAGA375450.010.949261
CATGACA1164950.010.908759
ACCGTGA176050.010.8114748
GTATTAG312100.010.7302961
GTGTATG1361950.010.6990621
TACCGTG143400.010.683937
CACATGA1344850.010.5744487
CTAGTAC187900.010.3296573
GTATATA783950.010.2956651
TCATACA1561200.010.2288652