FastQCFastQC Report
Tue 15 Nov 2016
SRR1946335.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946335.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43537758
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG145650.015.5466545
TATACTG227250.015.1530645
CTAGTAC156600.014.2501923
CTATACT225250.014.0159744
GTCGCGC16500.013.9514548
TCTATAC281000.013.8768413
CATACAC1116700.013.4963613
TACCGTG111250.013.3020297
ACACATG1101550.012.8499456
CCGTGAG115750.012.7848889
ACATGAC806750.012.7180648
TATACAG204750.012.6194125
GTATAGG150650.012.6077881
CATGACA817250.012.4914299
GTACTAG201150.012.4809571
TAGTACT308250.012.4367214
GTATAGA299100.012.3704361
CACATGA1059450.012.3007997
TGTAGGG205000.012.2378812
ATACCGT132350.012.1042196