FastQCFastQC Report
Tue 15 Nov 2016
SRR1946448.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946448.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28932672
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGAGCG129600.023.48440794
TGAGCGG108900.019.9569694
AGACCGG74500.016.73285194
TCTGAGC238500.014.43786694
TGGCGCG52250.014.34571378-79
TACCGTG80650.013.7549267
AGGCGTG53350.013.65428790-91
TATACCG101700.013.5900575
GCGTGTA53250.013.5538192-93
CCGTGAG75500.013.3217929
GGCGCGA55150.013.2922180-81
ATACCGT90600.013.1784526
GGCGTGT56700.012.84755490-91
TGATGGC182150.012.78369394
AGCGGGC56700.012.7639678-79
GGCTGGC58200.012.51480982-83
GCGCGAG61050.012.35399780-81
GTATAGA223150.012.2880891
CTCTGAG286850.012.16828494
GCGAGGG66950.011.7916482-83