FastQCFastQC Report
Tue 15 Nov 2016
SRR1946457.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946457.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24666616
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTGCG13100.014.710029
TATACCG86250.014.4436915
CCGTGAG56300.013.4405879
GTCGCGC6451.4551915E-1113.1166328
TACCGTG59600.013.0130717
GAGCGCG12900.012.7532397
ATACCGT73450.012.6072166
TATACTG129850.012.4901775
GCCGTGC24800.012.3188798
GTATAGA182000.012.249261
TCTATAC169750.011.9636973
CTATACT133450.011.906654
CTAGTAC77150.011.6992153
GTATTAG148850.011.4067321
TAGGCTG70000.011.3495885
TATACAG115600.011.3458715
ACATGAC685550.011.29182158
ACCGTGA70500.011.266978
GTATATA385250.011.2195571
CATACAC838150.011.1054173