Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946294.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38564898 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 40621 | 0.10533153750335343 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGACCGC | 5825 | 0.0 | 21.57562 | 94 |
TGAGCGG | 13540 | 0.0 | 18.0425 | 94 |
CTGAGCG | 14215 | 0.0 | 17.682447 | 94 |
TATACTG | 19175 | 0.0 | 15.444875 | 5 |
ACATGAC | 100305 | 0.0 | 15.375533 | 8 |
CATACAC | 128020 | 0.0 | 15.341572 | 3 |
CTATACT | 20040 | 0.0 | 15.294282 | 4 |
ACACATG | 126455 | 0.0 | 15.014247 | 6 |
CATGACA | 102075 | 0.0 | 14.863699 | 9 |
CACATGA | 122470 | 0.0 | 14.604482 | 7 |
TCTATAC | 23470 | 0.0 | 13.940405 | 3 |
TCATACA | 140295 | 0.0 | 13.927599 | 2 |
ATCATAC | 135330 | 0.0 | 13.696316 | 1 |
TATACCG | 11645 | 0.0 | 13.684833 | 5 |
GTATAGA | 24890 | 0.0 | 13.570664 | 1 |
GTGTATG | 119245 | 0.0 | 13.551523 | 1 |
TATACAG | 17830 | 0.0 | 13.498884 | 5 |
GTATATA | 54315 | 0.0 | 13.035218 | 1 |
GATTGAG | 109810 | 0.0 | 13.026305 | 7 |
TGATGGC | 19985 | 0.0 | 12.671444 | 94 |