Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946440.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18866230 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 22245 | 0.1179090894153204 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTGAGCG | 7425 | 0.0 | 14.367546 | 94 |
TGAGCGG | 6855 | 0.0 | 13.299872 | 94 |
TATACCG | 6625 | 0.0 | 13.270432 | 5 |
TACCGTG | 5105 | 0.0 | 12.245839 | 7 |
AGCGGGC | 3750 | 0.0 | 12.156083 | 94 |
AGACCGT | 5375 | 0.0 | 11.366273 | 94 |
ATACCGT | 5455 | 0.0 | 11.201899 | 6 |
GTATAGA | 11555 | 0.0 | 10.9873905 | 1 |
CCGTGAG | 4705 | 0.0 | 10.688748 | 9 |
TCTATAC | 10790 | 0.0 | 10.675036 | 3 |
GTATATA | 27150 | 0.0 | 10.408914 | 1 |
ACATGAC | 66780 | 0.0 | 10.353148 | 8 |
TCTGAGC | 13295 | 0.0 | 10.25092 | 94 |
CGGGCTG | 3335 | 0.0 | 10.215826 | 80-81 |
ACACATG | 79035 | 0.0 | 9.955865 | 6 |
CACATGA | 77360 | 0.0 | 9.928147 | 7 |
CTATACT | 8670 | 0.0 | 9.923341 | 4 |
CATGACA | 68915 | 0.0 | 9.875464 | 9 |
CATACAC | 82290 | 0.0 | 9.832378 | 3 |
AGGCGTG | 3040 | 0.0 | 9.662246 | 90-91 |