Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946427.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24892760 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT | 26374 | 0.10595048520131958 | No Hit |
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 25209 | 0.10127040954880054 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1065 | 0.0 | 11.909438 | 8 |
CTAGTAC | 8615 | 0.0 | 11.781375 | 3 |
TCTATAC | 14125 | 0.0 | 11.743126 | 3 |
TATACCG | 8010 | 0.0 | 11.672619 | 5 |
GTATAGA | 15125 | 0.0 | 11.283219 | 1 |
CCGTGAG | 5880 | 0.0 | 11.104898 | 9 |
TAGTACT | 17400 | 0.0 | 10.720396 | 4 |
GTACTAC | 10125 | 0.0 | 10.624679 | 6 |
CTATACT | 11110 | 0.0 | 10.572934 | 4 |
ATACCGT | 6905 | 0.0 | 10.47689 | 6 |
CATACAC | 97175 | 0.0 | 10.468895 | 3 |
ACACATG | 94465 | 0.0 | 10.433017 | 6 |
ACATGAC | 71345 | 0.0 | 10.291354 | 8 |
CCTAGTA | 10120 | 0.0 | 10.215113 | 2 |
CACATGA | 89660 | 0.0 | 9.991402 | 7 |
GTACTAG | 10080 | 0.0 | 9.981024 | 1 |
TATACTG | 11460 | 0.0 | 9.880528 | 5 |
CATGACA | 74360 | 0.0 | 9.785638 | 9 |
TACCGTG | 5745 | 0.0 | 9.730416 | 7 |
TCATACA | 104995 | 0.0 | 9.72058 | 2 |