FastQCFastQC Report
Tue 15 Nov 2016
SRR1946277.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946277.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28663554
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC14300.018.0729588
TATACCG110950.014.485545
TATACTG140600.014.2049455
TCGCGCG20000.014.0968849
TCTATAC178200.013.3730643
CATACAC678800.013.16348653
TACCGTG78900.012.9832567
CTATACT148500.012.7558454
GTATAGA197450.012.6333381
GTGTATG657400.012.4857941
CTAGTAC99150.012.4679123
TAGACTG68650.012.3216235
GCCGTGC27550.012.1098668
ACACATG698100.012.0556866
ACATGAC514950.011.8991288
GTATAGG102500.011.8925581
GTACTAG120600.011.8248241
ATACCGT85250.011.740846
CTAGGCT75600.011.6887124
CCGTGAG72500.011.6663869