Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946314.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30468060 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1945 | 0.0 | 17.636217 | 8 |
TATACCG | 10615 | 0.0 | 14.34366 | 5 |
TATACTG | 13735 | 0.0 | 13.993605 | 5 |
TCTATAC | 18165 | 0.0 | 13.921817 | 3 |
CTATACT | 14025 | 0.0 | 13.774885 | 4 |
TCGCGCG | 2790 | 0.0 | 13.642133 | 9 |
CCGTGAG | 8670 | 0.0 | 13.60367 | 9 |
TACCGTG | 10175 | 0.0 | 13.392692 | 7 |
ATACCGT | 8865 | 0.0 | 13.251799 | 6 |
GTATAGA | 19170 | 0.0 | 13.063598 | 1 |
CTAGTAC | 11495 | 0.0 | 12.962815 | 3 |
AGGTCGC | 3170 | 0.0 | 12.451842 | 6 |
CTAGGCT | 8645 | 0.0 | 12.397064 | 4 |
CATACAC | 73535 | 0.0 | 12.394606 | 3 |
ACCGTGA | 11965 | 0.0 | 12.095956 | 8 |
GTGTATG | 70280 | 0.0 | 12.042905 | 1 |
ACATGAC | 53670 | 0.0 | 12.02977 | 8 |
TAGTACT | 20225 | 0.0 | 11.922789 | 4 |
ACACATG | 72075 | 0.0 | 11.846332 | 6 |
TATACAG | 12410 | 0.0 | 11.7388315 | 5 |