Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946467.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 36199242 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 17515 | 0.0 | 11.832918 | 5 |
CTATACT | 18955 | 0.0 | 11.28109 | 4 |
TATACCG | 11345 | 0.0 | 11.1018095 | 5 |
GTCGCGC | 1620 | 0.0 | 11.023971 | 8 |
GTATATA | 53635 | 0.0 | 10.865796 | 1 |
TCTATAC | 21435 | 0.0 | 10.655559 | 3 |
CATACAC | 103105 | 0.0 | 10.62037 | 3 |
GTATAGA | 22385 | 0.0 | 10.548365 | 1 |
GTACTAG | 15370 | 0.0 | 10.527448 | 1 |
GTATTAG | 21295 | 0.0 | 10.491909 | 1 |
TAGACTG | 8580 | 0.0 | 10.352326 | 5 |
ACATGAC | 75925 | 0.0 | 10.343348 | 8 |
CTAGTAC | 12610 | 0.0 | 10.24899 | 3 |
ACACATG | 103220 | 0.0 | 10.153235 | 6 |
CATGACA | 77745 | 0.0 | 9.974431 | 9 |
GTGTATG | 97795 | 0.0 | 9.946548 | 1 |
CACATGA | 99210 | 0.0 | 9.9004345 | 7 |
TAGACCG | 9625 | 0.0 | 9.863114 | 5 |
GCCGTGC | 3930 | 0.0 | 9.805974 | 8 |
TAGTACT | 23870 | 0.0 | 9.76546 | 4 |