FastQCFastQC Report
Tue 15 Nov 2016
SRR1946305.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946305.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41366492
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG128900.012.2562565
CTAGTAC155800.011.800683
TAGACCG106600.011.7326445
CCGTGAG108800.010.800779
ATACCGT109150.010.7659936
TATACTG195100.010.5557315
AGACCGT110350.010.4785356
CATACAC1417400.010.4566263
ACATGAC1010900.010.4015548
ACACATG1346100.010.2731396
CTATACT195800.010.0866764
CACATGA1289100.010.049487
GTATAGA255000.010.0398591
GACCGTG87100.010.0379677
TCTATAC238450.010.0373313
ACCGTGA146600.010.003718
GTACTAG185100.09.8903591
CATGACA1055500.09.8774989
CCTAGTA168100.09.7608492
TCATACA1541800.09.6937632