FastQCFastQC Report
Tue 15 Nov 2016
SRR1946309.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946309.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24332042
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG116100.015.7453745
TATACCG76150.015.5512835
CTAGTAC87050.014.6867253
CTATACT120650.014.1028234
GTCGCGC12100.013.9810068
TCTATAC144250.013.6202573
ACATGAC462600.013.3681578
CATACAC636050.013.3312263
ACACATG626100.012.9544846
CCGTGAG67050.012.8955379
GTATAGG88400.012.7241231
CATGACA475100.012.6900119
TAGGCTG71550.012.6760295
GTGTATG600100.012.61871
CACATGA598300.012.4489177
TATACAG110050.012.4262055
TAGTACT170800.012.3011154
GTACTAG109500.012.2923271
TAGACCG67200.012.0280375
TAATACT197950.012.0148914