FastQCFastQC Report
Tue 15 Nov 2016
SRR1946317.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946317.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19750024
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG69350.017.0103425
TATACTG92700.015.00713355
TCTATAC121750.014.7462023
ATACCGT63800.014.438476
CTAGGCT55400.014.4219814
TACCGTG63600.014.3360817
GTATAGA124700.013.8139781
CTATACT97300.013.6214094
TATACAG81800.013.2147915
CATACAC446800.013.1802523
CCGTGAG48600.013.1518979
TAGACCG43000.013.1159155
TAGGCTG65050.013.0050195
TAGGCGG49200.012.60940554
ACCGTGA66950.012.4253468
GTCGCGC9150.012.3275268
ACACATG444350.012.2692666
ACATGAC360450.012.0740178
TAGTACT117550.011.9945634
GTGTATG439400.011.9645751