FastQCFastQC Report
Tue 15 Nov 2016
SRR1946468.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946468.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22510294
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG75400.012.71521955
TCTATAC142800.011.91369153
CTATACT113300.011.3239464
CCGTGAG58500.011.086719
TATACTG109050.010.989545
CATACAC656900.010.8387543
ATACCGT70700.010.7021626
ACCGTGA77850.010.5646258
TACCGTG58150.010.4256957
GTATAGA149450.010.2293531
ACATGAC535800.010.2275258
ACACATG653300.010.0783766
TATACAG108900.09.9689445
TAGGCTG65400.09.9166825
CATGACA553850.09.8094639
TACACTG66500.09.75264555
GTATTAG128600.09.6931661
CACATGA622450.09.6643037
TCATACA730150.09.5519432
GTGTATG633750.09.5154811