Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946345.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44137082 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 22290 | 0.0 | 14.990038 | 5 |
TATACCG | 14080 | 0.0 | 14.598368 | 5 |
TATACAG | 19530 | 0.0 | 13.888598 | 5 |
CTATACT | 23105 | 0.0 | 13.791199 | 4 |
CATACAC | 118120 | 0.0 | 13.527947 | 3 |
GTCGCGC | 1685 | 0.0 | 13.368435 | 8 |
GTATATA | 60880 | 0.0 | 13.254738 | 1 |
GTATAGG | 15905 | 0.0 | 13.082559 | 1 |
TCTATAC | 26740 | 0.0 | 13.074741 | 3 |
GTGTATG | 111180 | 0.0 | 12.77972 | 1 |
CTAGGCT | 11740 | 0.0 | 12.631567 | 4 |
ACACATG | 120715 | 0.0 | 12.611199 | 6 |
GTATAGA | 28765 | 0.0 | 12.605949 | 1 |
ACATGAC | 86815 | 0.0 | 12.481545 | 8 |
TAGGCTG | 13935 | 0.0 | 12.291891 | 5 |
TACCGTG | 10735 | 0.0 | 12.240318 | 7 |
TATACTA | 37990 | 0.0 | 12.118045 | 5 |
CACATGA | 115320 | 0.0 | 12.078029 | 7 |
CATGACA | 89415 | 0.0 | 12.045131 | 9 |
TCATACA | 131005 | 0.0 | 11.903652 | 2 |