FastQCFastQC Report
Tue 15 Nov 2016
SRR1946361.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946361.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56799204
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG195900.017.0861915
TCTATAC366250.015.6123483
GTCGCGC26250.015.2031418
CTAGTAC189600.015.0544113
TACCGTG154850.014.8262397
CTATACT294500.014.7612884
TATACTG292700.014.4989275
ATACCGT175750.014.0776176
GTATAGA386900.013.5985561
CATACAC1449650.013.5852413
TATACAG257300.013.1913335
ACATGAC1141450.012.9773548
ACACATG1498300.012.96285256
CTAGGCT149450.012.8477164
GTATAGG205400.012.6244411
CATGACA1166450.012.4617359
TAGTACT361100.012.402794
CACATGA1452800.012.3902387
TAGGCTG188600.012.2963275
GTGTATG1375750.012.1728851