Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946425.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21331538 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 26458 | 0.12403231309434884 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTGAG | 5555 | 0.0 | 12.684744 | 9 |
TATACCG | 7225 | 0.0 | 12.29036 | 5 |
CTAGTAC | 8310 | 0.0 | 11.421619 | 3 |
TACCGTG | 5615 | 0.0 | 11.29428 | 7 |
ATACCGT | 6285 | 0.0 | 10.987214 | 6 |
CCTAGTA | 8680 | 0.0 | 10.826564 | 2 |
ACATGAC | 77320 | 0.0 | 10.407347 | 8 |
ACCGTGA | 7255 | 0.0 | 10.359936 | 8 |
TCTATAC | 12650 | 0.0 | 10.251701 | 3 |
GTATAGA | 14390 | 0.0 | 10.193104 | 1 |
CATACAC | 93160 | 0.0 | 9.931014 | 3 |
ACACATG | 91475 | 0.0 | 9.89589 | 6 |
CATGACA | 80735 | 0.0 | 9.879849 | 9 |
CACATGA | 89130 | 0.0 | 9.855808 | 7 |
TATACTG | 9540 | 0.0 | 9.751187 | 5 |
GTACTAC | 8835 | 0.0 | 9.730162 | 6 |
GTATTAT | 16105 | 0.0 | 9.633096 | 1 |
CTGTCCC | 5330 | 0.0 | 9.430421 | 9 |
GACCGTG | 3460 | 0.0 | 9.368013 | 7 |
CTATACC | 10015 | 0.0 | 9.335919 | 4 |