FastQCFastQC Report
Tue 15 Nov 2016
SRR1946442.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946442.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28970968
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC359640.12413806815153709No Hit
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT327490.11304075169321232No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGAGCGG107450.016.22648494
CTGAGCG108550.014.97970494
AGACCGG66900.013.27677594
GTCGCGC12650.012.2606038
AGGCGTG46350.011.40773690-91
TCGCGCG17300.010.8667049
TATACTG128850.010.799655
ACATGAC1029800.010.747978
CTAGTAC92900.010.72798253
GTATAGA177050.010.64901351
TATACCG92000.010.3731495
CATACAC1371350.010.3424853
GTACTAG111250.010.3121851
CATGACA1072400.010.2858519
ACACATG1339650.010.1538346
GTATTAG145550.010.07867051
GCGTGTA50600.010.03105692-93
CACATGA1290450.09.9798167
TGGCGCG53000.09.9758278-79
GGCTGGC51500.09.94560582-83