FastQCFastQC Report
Tue 15 Nov 2016
SRR1946344.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946344.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38744730
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGTAC132850.015.0119333
CATACAC949850.013.674783
TATACCG114300.013.6710435
TATACTG201450.013.370525
GTACTAG166650.013.3580771
CTATACT201000.013.3072434
TATACAG187150.013.0131135
ACATGAC817450.012.7611668
GACCGTG72850.012.6895747
ACACATG976300.012.6602516
TGTAGGG173300.012.5369112
CATGACA832150.012.4455139
GTATAGG132850.012.2670131
ACCGTGC45650.012.2325848
TCTATAC233800.012.2030493
CACATGA946650.012.1645357
GTGTATG904850.012.1245931
TAGACCG103100.012.061215
TCATACA1064300.011.9396822
CCTAGTA150600.011.93388752