Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946316.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21459044 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTGCG | 1475 | 0.0 | 17.840353 | 9 |
TATACCG | 7230 | 0.0 | 16.704506 | 5 |
TATACTG | 10180 | 0.0 | 14.910546 | 5 |
GTCGCGC | 780 | 0.0 | 13.85609 | 8 |
TCTATAC | 13440 | 0.0 | 13.814393 | 3 |
TAGACCG | 4495 | 0.0 | 13.800126 | 5 |
CTATACT | 10925 | 0.0 | 13.595637 | 4 |
ATACCGT | 6230 | 0.0 | 13.426089 | 6 |
CATACAC | 57850 | 0.0 | 13.365848 | 3 |
TACCGTG | 5270 | 0.0 | 13.196524 | 7 |
AGACCGT | 4565 | 0.0 | 13.073157 | 6 |
ACACATG | 56665 | 0.0 | 12.754369 | 6 |
ACATGAC | 45370 | 0.0 | 12.728889 | 8 |
GTGTATG | 55495 | 0.0 | 12.466349 | 1 |
CATGACA | 45910 | 0.0 | 12.425642 | 9 |
TAGTACT | 12955 | 0.0 | 12.408596 | 4 |
TACACTG | 6220 | 0.0 | 12.315046 | 5 |
GTATAGA | 14085 | 0.0 | 12.2960825 | 1 |
GTATTAG | 12345 | 0.0 | 12.084926 | 1 |
CACATGA | 54960 | 0.0 | 12.06393 | 7 |