FastQCFastQC Report
Tue 15 Nov 2016
SRR1946343.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946343.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43762128
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG147450.016.3898325
TATACTG225950.015.243895
TCTATAC288600.015.0405923
CTATACT231200.014.65442854
GTATAGA312350.014.3904771
TACCGTG107450.014.10637
TATACAG201250.013.8037765
ATACCGT137400.013.3538516
CATACAC1100950.013.3241933
GTATATA605650.013.18353751
GTGTATG1053850.012.6663071
CTAGTAC129700.012.5547773
ACACATG1076950.012.3094736
GTATAGG153350.012.2206371
ACATGAC760900.012.0199678
CCTAGAC103950.012.0081653
TAGTACT247100.011.9832924
ACTGTCC113700.011.8864198
CCGTGCG24950.011.8491999
CATGACA762800.011.8300789