FastQCFastQC Report
Tue 15 Nov 2016
SRR1946388.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946388.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31430698
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGC52900.013.86148594
GTCGCGC26100.012.7835328
TCGCGCG30800.011.5957279
TATACCG117450.011.0031285
TGAGCGG225300.010.99487494
TATACTG133900.010.774435
GCTGTCC96400.010.4320548
CTGAGCG229350.010.30884794
TAGGCTG114100.010.0905995
GAGCGGG183250.09.92676794
GTATAGA187200.09.7709931
GTATTAG168500.09.7670441
CATACAC1165000.09.7194893
GTGCGCG19700.09.5417699
CTATACT142650.09.4570234
ACATGAC847500.09.4374128
AGCGGGC138500.09.36699294
CTAGGCT113600.09.3513534
TAGGCCG53950.09.3202775
CTGTCCC130650.09.3159149