FastQCFastQC Report
Tue 15 Nov 2016
SRR1946422.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946422.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9712774
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG33350.013.4055365
CCGTGAG33850.012.652339
TACCGTG24100.012.4973917
GTATAGA65100.012.1435761
GACCGTG26850.011.7432137
ATACCGT31800.011.6911276
TGTAGGG57200.011.3517612
GTAGGGA52900.011.1195223
CTAGTAC45850.010.9818683
TAGGCCG8601.8189894E-1110.9442995
ACCGTGA45800.010.6867218
GTACTAG56950.010.5763191
TATACAG42200.010.371155
GATACCC51450.010.3364098
ATACCCC53450.010.3021049
TCTATAC59350.010.2282363
GCCGTGC7855.2787072E-910.1919168
GTACTAC50850.010.0876956
GGGATAC55500.010.0056536
TAGACCG32000.010.0003545