FastQCFastQC Report
Tue 15 Nov 2016
SRR1946414.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946414.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28114458
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC12400.010.2335918
GTATATA381900.010.0576011
GTATTAG155150.09.9693331
CTAGTAC84900.09.9671223
TATACTG136900.09.8556095
CATACAC1005800.09.8482243
ACATGAC819250.09.8213988
ACACATG973800.09.7824316
GTATAGA187800.09.7631741
CACATGA942850.09.5147197
CATGACA848600.09.4622519
TATACCG86950.09.1373895
TCATACA1080300.09.0996992
CTATACT142750.09.0892314
TAGACCG57600.09.0595265
TAGTACT161200.09.0404664
GTATAGG91650.09.0282211
ATCATAC1075000.08.9041261
GTGTATG930550.08.8716981
TATACAG123700.08.7790445