Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946303.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23140654 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 11770 | 0.0 | 16.88938 | 5 |
CTATACT | 12085 | 0.0 | 15.558182 | 4 |
TATACCG | 8400 | 0.0 | 15.217363 | 5 |
CATACAC | 61045 | 0.0 | 14.291354 | 3 |
GTCGCGC | 1460 | 0.0 | 14.161805 | 8 |
ACATGAC | 48835 | 0.0 | 14.096952 | 8 |
TCTATAC | 14405 | 0.0 | 14.03139 | 3 |
CTAGGCT | 6395 | 0.0 | 13.745057 | 4 |
ACACATG | 63310 | 0.0 | 13.301148 | 6 |
CATGACA | 51170 | 0.0 | 13.1964855 | 9 |
GTATATA | 35930 | 0.0 | 13.11521 | 1 |
CACATGA | 60600 | 0.0 | 13.104903 | 7 |
GTATAGA | 14955 | 0.0 | 13.063515 | 1 |
GTGTATG | 58320 | 0.0 | 12.939407 | 1 |
TCATACA | 67230 | 0.0 | 12.717892 | 2 |
TAGGCTG | 7080 | 0.0 | 12.677975 | 5 |
TCGCGCG | 1760 | 0.0 | 12.548798 | 9 |
ATCATAC | 66765 | 0.0 | 12.501389 | 1 |
GTATTAG | 12910 | 0.0 | 12.470913 | 1 |
TATACAG | 10845 | 0.0 | 12.349947 | 5 |