Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946403.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31963428 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTGAG | 9335 | 0.0 | 13.7492285 | 9 |
CTAGTAC | 14840 | 0.0 | 13.1467285 | 3 |
TATACCG | 10105 | 0.0 | 12.328561 | 5 |
GACCGTG | 7115 | 0.0 | 12.087041 | 7 |
ACCGTGA | 12015 | 0.0 | 11.8133335 | 8 |
ATACCGT | 8575 | 0.0 | 11.454827 | 6 |
TACCGTG | 7400 | 0.0 | 11.367503 | 7 |
CCTAGTA | 15925 | 0.0 | 11.336362 | 2 |
GTACTAC | 15960 | 0.0 | 10.954346 | 6 |
TAGACCG | 9510 | 0.0 | 10.677659 | 5 |
TATACTG | 14665 | 0.0 | 10.642873 | 5 |
TCTATAC | 18265 | 0.0 | 10.578538 | 3 |
AGACCGT | 9370 | 0.0 | 10.533096 | 6 |
GTATAGA | 20370 | 0.0 | 10.524607 | 1 |
GTACTAG | 18280 | 0.0 | 10.493396 | 1 |
TAGTACT | 28875 | 0.0 | 10.305561 | 4 |
TATACAG | 13685 | 0.0 | 9.927865 | 5 |
CATACAC | 104090 | 0.0 | 9.913546 | 3 |
GTATTAG | 17215 | 0.0 | 9.858986 | 1 |
CTATACT | 14950 | 0.0 | 9.71644 | 4 |