Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946456.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19632648 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTGAGCG | 4710 | 0.0 | 14.381872 | 94 |
TATACTG | 10095 | 0.0 | 12.200533 | 5 |
TATACCG | 6275 | 0.0 | 12.136267 | 5 |
TAGACCG | 4490 | 0.0 | 11.412059 | 5 |
ACATGAC | 48205 | 0.0 | 10.890938 | 8 |
GTATTAG | 11670 | 0.0 | 10.801238 | 1 |
CTATACT | 10085 | 0.0 | 10.627786 | 4 |
GTCGCGC | 930 | 7.2759576E-12 | 10.613058 | 8 |
CATACAC | 58555 | 0.0 | 10.581208 | 3 |
CATGACA | 49500 | 0.0 | 10.482337 | 9 |
ACACATG | 58195 | 0.0 | 10.468151 | 6 |
GTATATA | 29270 | 0.0 | 10.364459 | 1 |
GTATAGA | 12500 | 0.0 | 10.309798 | 1 |
CCGTGCG | 1200 | 0.0 | 10.183248 | 9 |
CACATGA | 57170 | 0.0 | 10.154158 | 7 |
GTATTAT | 14810 | 0.0 | 9.972045 | 1 |
ATACCGT | 5485 | 0.0 | 9.855346 | 6 |
TCGCGCG | 1100 | 1.8189894E-12 | 9.82719 | 9 |
TCTATAC | 11450 | 0.0 | 9.812423 | 3 |
CCGACCG | 2395 | 0.0 | 9.812026 | 9 |