FastQCFastQC Report
Tue 15 Nov 2016
SRR1946433.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946433.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33596508
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG124400.012.8786595
GTATAGA227250.011.7087471
GTCGCGC19350.011.4098648
TCTATAC208600.010.9246633
ATACCGT103800.010.6802846
TATACTG155000.010.5786535
TACCGTG97250.010.4818267
CTAGGCT95350.010.4465264
GCCGTGC28600.010.3475648
CTAGTAC131000.010.2224313
GCTGTCC85500.010.1641068
CCGTGAG83400.010.1384749
CATACAC1201800.010.0597733
ACATGAC1024300.010.0571538
GTATATA493350.09.8528821
ACACATG1227950.09.81621556
CACATGA1196700.09.7270877
CATGACA1081900.09.5955829
TAGTACT227450.09.4609824
TAGGCTG105450.09.445525