FastQCFastQC Report
Tue 15 Nov 2016
SRR1946394.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946394.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26273074
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC16050.012.5894428
TATACTG113700.011.2415785
AGACCGA111550.010.91337294
TATACCG85000.010.8356755
CTGAGCG199300.010.80157394
CTAGTAC111250.010.645473
TAGACCG80550.010.5592225
TCTATAC140750.010.5178383
TCGCGCG20800.010.3922029
AGACCGT83750.010.2116996
GTACTAG134950.010.101931
ACATGAC918100.010.0010978
GTATAGA145350.09.9612751
TAGTACT212350.09.9592034
TATACAG111950.09.8222425
TAGGCGG68000.09.8139484
CATACAC1042850.09.81071953
CCGTGAG71800.09.7515789
ACACATG1057450.09.7496316
CAGACCG78450.09.73626792-93