Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946394.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26273074 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1605 | 0.0 | 12.589442 | 8 |
TATACTG | 11370 | 0.0 | 11.241578 | 5 |
AGACCGA | 11155 | 0.0 | 10.913372 | 94 |
TATACCG | 8500 | 0.0 | 10.835675 | 5 |
CTGAGCG | 19930 | 0.0 | 10.801573 | 94 |
CTAGTAC | 11125 | 0.0 | 10.64547 | 3 |
TAGACCG | 8055 | 0.0 | 10.559222 | 5 |
TCTATAC | 14075 | 0.0 | 10.517838 | 3 |
TCGCGCG | 2080 | 0.0 | 10.392202 | 9 |
AGACCGT | 8375 | 0.0 | 10.211699 | 6 |
GTACTAG | 13495 | 0.0 | 10.10193 | 1 |
ACATGAC | 91810 | 0.0 | 10.001097 | 8 |
GTATAGA | 14535 | 0.0 | 9.961275 | 1 |
TAGTACT | 21235 | 0.0 | 9.959203 | 4 |
TATACAG | 11195 | 0.0 | 9.822242 | 5 |
TAGGCGG | 6800 | 0.0 | 9.813948 | 4 |
CATACAC | 104285 | 0.0 | 9.8107195 | 3 |
CCGTGAG | 7180 | 0.0 | 9.751578 | 9 |
ACACATG | 105745 | 0.0 | 9.749631 | 6 |
CAGACCG | 7845 | 0.0 | 9.736267 | 92-93 |