FastQCFastQC Report
Tue 15 Nov 2016
SRR1946333.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946333.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55678064
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC22350.014.2935998
TATACCG184900.014.2284565
CTATACT298650.013.8277834
GAGCGCG32450.013.7536877
TATACTG291600.013.6298025
TCTATAC368500.013.5015833
CATACAC1405150.012.9494413
ACATGAC1045700.012.741178
TATACAG259700.012.445815
ACACATG1410350.012.434856
TACCGTG139000.012.37019357
CATGACA1058750.012.3134519
GTATAGA385350.012.2729821
GTATATA794600.012.010331
CACATGA1351150.011.8183767
GTATAGG212550.011.7225541
GTGTATG1330450.011.717191
TCATACA1573600.011.5005172
GCGCGCC38550.011.455499
CTAGTAC171450.011.4268043