FastQCFastQC Report
Tue 15 Nov 2016
SRR1946365.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946365.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43095078
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG147500.016.9286825
ATACCGT140250.014.7885866
TACCGTG123800.014.7450877
TCTATAC275900.014.6826843
TATACTG225150.014.5508045
CTAGTAC137700.014.010523
CTATACT215900.013.7183844
GTATAGA304300.013.3078151
CCGTGAG103650.012.7685629
CTATACC223400.012.4594174
GTCGCGC15450.012.4543228
CATACAC1161650.012.4336493
TAGTACT268750.012.1384314
ACCGTGA135100.012.0889518
GTATAGG145950.012.0705931
TATACAG200750.011.9472755
GTATATA594600.011.8829521
GTGTATG1104350.011.7452171
ACATGAC1020700.011.6006918
ACACATG1230000.011.5787276