Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946356.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31816972 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10925 | 0.0 | 16.243805 | 5 |
CTATACT | 16620 | 0.0 | 14.293805 | 4 |
TCTATAC | 20035 | 0.0 | 14.013291 | 3 |
CATACAC | 98975 | 0.0 | 13.69935 | 3 |
ACATGAC | 71115 | 0.0 | 13.634431 | 8 |
TATACTG | 17445 | 0.0 | 13.536751 | 5 |
TATACAG | 14860 | 0.0 | 13.364077 | 5 |
GTCGCGC | 1165 | 0.0 | 13.300445 | 8 |
TACCGTG | 8545 | 0.0 | 13.242527 | 7 |
ATACCGT | 9695 | 0.0 | 13.220647 | 6 |
CATGACA | 72495 | 0.0 | 13.219441 | 9 |
ACACATG | 92505 | 0.0 | 12.98802 | 6 |
GTACTAG | 13580 | 0.0 | 12.939158 | 1 |
GTATAGA | 21580 | 0.0 | 12.823248 | 1 |
CACATGA | 89215 | 0.0 | 12.7678795 | 7 |
CCGTGAG | 7965 | 0.0 | 12.556598 | 9 |
CTAGTAC | 10455 | 0.0 | 12.528771 | 3 |
TCATACA | 109590 | 0.0 | 12.296677 | 2 |
GTATATA | 46080 | 0.0 | 12.255363 | 1 |
ATCATAC | 108355 | 0.0 | 12.058304 | 1 |