Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946284.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20487664 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 6600 | 0.0 | 15.310133 | 5 |
TATACTG | 9615 | 0.0 | 15.104058 | 5 |
CTATACT | 10330 | 0.0 | 14.422594 | 4 |
GTCGCGC | 930 | 0.0 | 14.150101 | 8 |
CATACAC | 62270 | 0.0 | 14.0915365 | 3 |
ACATGAC | 44250 | 0.0 | 13.966801 | 8 |
GTGTATG | 58770 | 0.0 | 13.966079 | 1 |
GCCGTGC | 1855 | 0.0 | 13.681518 | 8 |
ACACATG | 58885 | 0.0 | 13.67216 | 6 |
CATGACA | 45575 | 0.0 | 13.488557 | 9 |
TCTATAC | 12035 | 0.0 | 13.316842 | 3 |
TATACAG | 9565 | 0.0 | 13.26671 | 5 |
TAATACT | 16950 | 0.0 | 13.032045 | 4 |
CACATGA | 55820 | 0.0 | 12.966278 | 7 |
TCATACA | 68915 | 0.0 | 12.773956 | 2 |
GATTGAG | 55555 | 0.0 | 12.723574 | 7 |
TGTATGA | 62455 | 0.0 | 12.657857 | 2 |
ATCATAC | 67710 | 0.0 | 12.511327 | 1 |
GTATAGG | 7280 | 0.0 | 12.476985 | 1 |
TTGAGTA | 58135 | 0.0 | 12.369103 | 9 |