Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946437.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27883010 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 32305 | 0.1158590840802338 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTGAGCG | 8660 | 0.0 | 17.691185 | 94 |
TGAGCGG | 8250 | 0.0 | 14.924663 | 94 |
TGGCGCG | 3780 | 0.0 | 10.87903 | 78-79 |
GTATAGA | 17500 | 0.0 | 10.720206 | 1 |
ACATGAC | 78915 | 0.0 | 10.45845 | 8 |
CTATACT | 13625 | 0.0 | 10.247596 | 4 |
GTACTAG | 9600 | 0.0 | 10.236308 | 1 |
TATACCG | 9050 | 0.0 | 10.233396 | 5 |
GTATATA | 39595 | 0.0 | 10.164867 | 1 |
GTATTAG | 15500 | 0.0 | 10.040714 | 1 |
ACACATG | 99895 | 0.0 | 10.01764 | 6 |
CATGACA | 82000 | 0.0 | 9.967417 | 9 |
CATACAC | 100370 | 0.0 | 9.887497 | 3 |
AGCGGGC | 4210 | 0.0 | 9.823687 | 78-79 |
CACATGA | 97745 | 0.0 | 9.66553 | 7 |
GACCGTG | 4175 | 0.0 | 9.569442 | 7 |
TATACTG | 12705 | 0.0 | 9.361554 | 5 |
TCTATAC | 16100 | 0.0 | 9.314657 | 3 |
GTATTAA | 19460 | 0.0 | 9.253888 | 1 |
CCGTGAG | 5675 | 0.0 | 9.192931 | 9 |