FastQCFastQC Report
Tue 15 Nov 2016
SRR1946405.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946405.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37131930
Sequences flagged as poor quality0
Sequence length100
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG125950.014.18388755
CTAGTAC169500.013.7568113
CCGTGAG107450.013.4322719
GTACTAC176100.012.3563416
CCTAGTA178450.012.3558982
ATACCGT100500.012.1116126
TACCGTG93350.011.47790057
GTATAGA224700.011.3820611
ACCGTGA147000.011.3182528
TAGACCG108900.011.0515195
TCTATAC203800.010.6341443
GACCGTG87850.010.5916937
TATACTG170400.010.53910355
TAGTACT333450.010.4891944
AGACCGT111100.010.4484336
GTACTAG207200.010.437421
ACATGAC1020100.010.2789858
ACACATG1310650.09.9253916
CATACAC1303000.09.88219453
ACTACTC267050.09.8733318