FastQCFastQC Report
Tue 15 Nov 2016
SRR1946387.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946387.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33365914
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG106850.013.5463165
CTGAGCG166950.012.78252594
CCGTGAG88600.012.0933029
GTCGCGC18300.011.8127178
CTAGTAC144500.011.4502993
ATACCGT96050.011.3510416
TCTGAGC282800.011.00337394
TATACTG149100.010.8108915
GTATAGA209750.010.6711151
ACCGTGA117950.010.6379138
AGACCGA121750.010.34696794
TACCGTG91950.010.2216587
TCTATAC191300.09.9513523
GTATTAG179600.09.791971
GTATTAT238350.09.6865941
ACATGAC990050.09.5075128
CCTAGTA160700.09.4504342
TAGACCG82500.09.3988575
TAGTACT281300.09.3744874
TCGCGCG23600.09.3590039