FastQCFastQC Report
Tue 15 Nov 2016
SRR1946331.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946331.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17681296
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG127250.06.84907694-95
GATCGGA181900.06.33188194-95
ATCGGAA174800.06.154325594-95
GCACACG30800.05.705644694-95
CGGAAGA155200.05.52381694-95