Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946360.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 48928976 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 16565 | 0.0 | 16.834282 | 5 |
TACCGTG | 11850 | 0.0 | 14.421653 | 7 |
TCTATAC | 32955 | 0.0 | 14.402558 | 3 |
ATACCGT | 15905 | 0.0 | 14.079922 | 6 |
TATACTG | 26065 | 0.0 | 13.958654 | 5 |
CTAGTAC | 15690 | 0.0 | 13.913609 | 3 |
CTATACT | 26505 | 0.0 | 13.868955 | 4 |
CCGTGAG | 11840 | 0.0 | 13.799731 | 9 |
CATACAC | 133555 | 0.0 | 13.558114 | 3 |
ACCGTGA | 15485 | 0.0 | 13.310562 | 8 |
TATACAG | 22495 | 0.0 | 12.960006 | 5 |
GTATAGA | 34250 | 0.0 | 12.865465 | 1 |
ACACATG | 132810 | 0.0 | 12.549116 | 6 |
GTATATA | 72490 | 0.0 | 12.131402 | 1 |
GCCGTGC | 5155 | 0.0 | 12.022322 | 8 |
GTGTATG | 124705 | 0.0 | 11.98293 | 1 |
ACATGAC | 96410 | 0.0 | 11.921541 | 8 |
CTATACC | 25145 | 0.0 | 11.893168 | 4 |
CACATGA | 128670 | 0.0 | 11.836832 | 7 |
TCATACA | 147925 | 0.0 | 11.816521 | 2 |