FastQCFastQC Report
Tue 15 Nov 2016
SRR1946416.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946416.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14615414
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG51000.014.1166855
TAGGCGG49350.014.1111934
GCGGATC52100.013.0961847
CTAGGCT52200.012.79991154
GCTGTCC48600.012.5877158
TAGGCTG59150.012.4898265
GGCGGAT57700.012.3959786
AGGCGGA59600.012.3165725
ATACCGT42450.012.30433756
TACCGTG50050.011.75223357
GTACTAG71800.011.664921
CTAGTAC58550.011.3313053
TCTATAC76000.011.2679643
CTAGGCG68950.011.2599743
CTGTCCC62850.010.9324439
CCGTGAG36150.010.6751789
GCCTAGG98950.010.2237181
CTATACT60400.010.1273454
ACATGAC382300.010.0936778
ACCGTGA56150.010.0570658