Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946367.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40333920 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 15075 | 0.0 | 18.526995 | 5 |
TACCGTG | 12770 | 0.0 | 17.052322 | 7 |
TCTATAC | 27035 | 0.0 | 16.1662 | 3 |
CCGTGAG | 10655 | 0.0 | 16.077858 | 9 |
ATACCGT | 14375 | 0.0 | 15.73515 | 6 |
TATACTG | 20295 | 0.0 | 15.612053 | 5 |
ACCGTGA | 13940 | 0.0 | 14.814382 | 8 |
CTATACT | 20845 | 0.0 | 14.52516 | 4 |
GTATAGA | 28725 | 0.0 | 14.345118 | 1 |
CTATACC | 22495 | 0.0 | 13.98144 | 4 |
GTCGCGC | 1535 | 0.0 | 13.759346 | 8 |
CATACAC | 108485 | 0.0 | 13.5963125 | 3 |
TATACAG | 17590 | 0.0 | 13.529678 | 5 |
GTATAGG | 14840 | 0.0 | 12.981191 | 1 |
CTAGTAC | 13205 | 0.0 | 12.975947 | 3 |
ACACATG | 103690 | 0.0 | 12.857781 | 6 |
GTGTATG | 102260 | 0.0 | 12.814666 | 1 |
GTATATA | 56915 | 0.0 | 12.317048 | 1 |
TCATACA | 118980 | 0.0 | 12.248109 | 2 |
ACATGAC | 79945 | 0.0 | 12.246631 | 8 |