Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946340.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 58201994 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 20655 | 0.0 | 16.695053 | 5 |
TACCGTG | 16025 | 0.0 | 16.183239 | 7 |
TCTATAC | 39025 | 0.0 | 14.856204 | 3 |
CCGTGAG | 15660 | 0.0 | 14.610383 | 9 |
TATACTG | 30505 | 0.0 | 14.569245 | 5 |
ATACCGT | 19255 | 0.0 | 14.541988 | 6 |
CTAGTAC | 20330 | 0.0 | 14.143265 | 3 |
CATACAC | 153135 | 0.0 | 13.916633 | 3 |
CTATACT | 31055 | 0.0 | 13.631036 | 4 |
GTATAGA | 41310 | 0.0 | 13.34972 | 1 |
ACATGAC | 124330 | 0.0 | 13.244528 | 8 |
ACCGTGA | 20555 | 0.0 | 13.233828 | 8 |
ACACATG | 155480 | 0.0 | 13.104967 | 6 |
CATGACA | 127515 | 0.0 | 12.711073 | 9 |
CACATGA | 149770 | 0.0 | 12.5883465 | 7 |
TATACAG | 27885 | 0.0 | 12.467461 | 5 |
TCATACA | 169335 | 0.0 | 12.465937 | 2 |
CTATACC | 30580 | 0.0 | 12.291025 | 4 |
GTGTATG | 146750 | 0.0 | 12.06832 | 1 |
CCTAGTA | 22195 | 0.0 | 12.065766 | 2 |