Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946309.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24332042 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 11610 | 0.0 | 15.745374 | 5 |
TATACCG | 7615 | 0.0 | 15.551283 | 5 |
CTAGTAC | 8705 | 0.0 | 14.686725 | 3 |
CTATACT | 12065 | 0.0 | 14.102823 | 4 |
GTCGCGC | 1210 | 0.0 | 13.981006 | 8 |
TCTATAC | 14425 | 0.0 | 13.620257 | 3 |
ACATGAC | 46260 | 0.0 | 13.368157 | 8 |
CATACAC | 63605 | 0.0 | 13.331226 | 3 |
ACACATG | 62610 | 0.0 | 12.954484 | 6 |
CCGTGAG | 6705 | 0.0 | 12.895537 | 9 |
GTATAGG | 8840 | 0.0 | 12.724123 | 1 |
CATGACA | 47510 | 0.0 | 12.690011 | 9 |
TAGGCTG | 7155 | 0.0 | 12.676029 | 5 |
GTGTATG | 60010 | 0.0 | 12.6187 | 1 |
CACATGA | 59830 | 0.0 | 12.448917 | 7 |
TATACAG | 11005 | 0.0 | 12.426205 | 5 |
TAGTACT | 17080 | 0.0 | 12.301115 | 4 |
GTACTAG | 10950 | 0.0 | 12.292327 | 1 |
TAGACCG | 6720 | 0.0 | 12.028037 | 5 |
TAATACT | 19795 | 0.0 | 12.014891 | 4 |