FastQCFastQC Report
Tue 15 Nov 2016
SRR1946299.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946299.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35029022
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG167850.015.4058025
TATACCG123550.014.42246155
CATACAC963350.013.9534933
TCTATAC208250.013.7720223
CTATACT179150.013.4893924
ACATGAC727100.013.2139028
ACACATG974850.012.9961586
TATACAG161500.012.9547925
TACCGTG82450.012.8850757
CATGACA745150.012.6027449
CTAGTAC105200.012.5139733
CACATGA940750.012.5020797
TCATACA1071000.012.4513242
GTGTATG903700.012.3549661
CTGAGCG81200.012.28695294
ATCATAC1065200.012.14261
TAGTACT201550.011.9901994
ATACCGT106250.011.9461746
GTATATA522050.011.8697561
CCGTGCG18300.011.8146299