Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946354.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43134140 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 15930 | 0.0 | 16.415396 | 5 |
GTCGCGC | 2165 | 0.0 | 14.964077 | 8 |
TACCGTG | 12285 | 0.0 | 14.026332 | 7 |
TCTATAC | 27585 | 0.0 | 14.02414 | 3 |
TATACTG | 22085 | 0.0 | 13.98751 | 5 |
CTAGTAC | 16525 | 0.0 | 13.949609 | 3 |
CTAGGCT | 12010 | 0.0 | 13.681936 | 4 |
ATACCGT | 13735 | 0.0 | 13.467985 | 6 |
GCTGTCC | 11515 | 0.0 | 13.455777 | 8 |
CTATACT | 22535 | 0.0 | 13.271022 | 4 |
TAGGCTG | 14020 | 0.0 | 13.160018 | 5 |
GTATAGA | 30085 | 0.0 | 13.101378 | 1 |
CATACAC | 104265 | 0.0 | 12.999608 | 3 |
TCGCGCG | 2885 | 0.0 | 12.857011 | 9 |
CTGTCCC | 14570 | 0.0 | 12.825735 | 9 |
TATACAG | 20625 | 0.0 | 12.291694 | 5 |
GTGTATG | 98570 | 0.0 | 12.2487955 | 1 |
ACACATG | 105285 | 0.0 | 12.075837 | 6 |
ACATGAC | 73885 | 0.0 | 12.036008 | 8 |
CCGTGAG | 10765 | 0.0 | 11.950754 | 9 |