Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946414.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28114458 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 1240 | 0.0 | 10.233591 | 8 |
GTATATA | 38190 | 0.0 | 10.057601 | 1 |
GTATTAG | 15515 | 0.0 | 9.969333 | 1 |
CTAGTAC | 8490 | 0.0 | 9.967122 | 3 |
TATACTG | 13690 | 0.0 | 9.855609 | 5 |
CATACAC | 100580 | 0.0 | 9.848224 | 3 |
ACATGAC | 81925 | 0.0 | 9.821398 | 8 |
ACACATG | 97380 | 0.0 | 9.782431 | 6 |
GTATAGA | 18780 | 0.0 | 9.763174 | 1 |
CACATGA | 94285 | 0.0 | 9.514719 | 7 |
CATGACA | 84860 | 0.0 | 9.462251 | 9 |
TATACCG | 8695 | 0.0 | 9.137389 | 5 |
TCATACA | 108030 | 0.0 | 9.099699 | 2 |
CTATACT | 14275 | 0.0 | 9.089231 | 4 |
TAGACCG | 5760 | 0.0 | 9.059526 | 5 |
TAGTACT | 16120 | 0.0 | 9.040466 | 4 |
GTATAGG | 9165 | 0.0 | 9.028221 | 1 |
ATCATAC | 107500 | 0.0 | 8.904126 | 1 |
GTGTATG | 93055 | 0.0 | 8.871698 | 1 |
TATACAG | 12370 | 0.0 | 8.779044 | 5 |