Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946374.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20428036 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 5975 | 0.0 | 15.574341 | 5 |
TATACTG | 9830 | 0.0 | 13.626168 | 5 |
TCTATAC | 11950 | 0.0 | 13.529225 | 3 |
ACATGAC | 37745 | 0.0 | 13.011856 | 8 |
CTATACT | 9905 | 0.0 | 13.001052 | 4 |
CATACAC | 52495 | 0.0 | 12.865338 | 3 |
GTATAGA | 12900 | 0.0 | 12.700223 | 1 |
CTAGTAC | 6540 | 0.0 | 12.647868 | 3 |
CATGACA | 38490 | 0.0 | 12.637897 | 9 |
ACACATG | 51960 | 0.0 | 12.52746 | 6 |
TAGTACT | 11690 | 0.0 | 12.141569 | 4 |
TACCGTG | 5440 | 0.0 | 12.095158 | 7 |
CACATGA | 49735 | 0.0 | 11.953932 | 7 |
CCGTGAG | 4985 | 0.0 | 11.784936 | 9 |
GTGTATG | 50065 | 0.0 | 11.538043 | 1 |
GTATAGG | 7225 | 0.0 | 11.468235 | 1 |
TCATACA | 58140 | 0.0 | 11.462612 | 2 |
TAGAGCG | 3340 | 0.0 | 11.397797 | 5 |
ACCGTGA | 6865 | 0.0 | 11.36449 | 8 |
GTATTAG | 11580 | 0.0 | 11.180106 | 1 |