Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946388.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31430698 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGACCGC | 5290 | 0.0 | 13.861485 | 94 |
GTCGCGC | 2610 | 0.0 | 12.783532 | 8 |
TCGCGCG | 3080 | 0.0 | 11.595727 | 9 |
TATACCG | 11745 | 0.0 | 11.003128 | 5 |
TGAGCGG | 22530 | 0.0 | 10.994874 | 94 |
TATACTG | 13390 | 0.0 | 10.77443 | 5 |
GCTGTCC | 9640 | 0.0 | 10.432054 | 8 |
CTGAGCG | 22935 | 0.0 | 10.308847 | 94 |
TAGGCTG | 11410 | 0.0 | 10.090599 | 5 |
GAGCGGG | 18325 | 0.0 | 9.926767 | 94 |
GTATAGA | 18720 | 0.0 | 9.770993 | 1 |
GTATTAG | 16850 | 0.0 | 9.767044 | 1 |
CATACAC | 116500 | 0.0 | 9.719489 | 3 |
GTGCGCG | 1970 | 0.0 | 9.541769 | 9 |
CTATACT | 14265 | 0.0 | 9.457023 | 4 |
ACATGAC | 84750 | 0.0 | 9.437412 | 8 |
AGCGGGC | 13850 | 0.0 | 9.366992 | 94 |
CTAGGCT | 11360 | 0.0 | 9.351353 | 4 |
TAGGCCG | 5395 | 0.0 | 9.320277 | 5 |
CTGTCCC | 13065 | 0.0 | 9.315914 | 9 |