FastQCFastQC Report
Tue 15 Nov 2016
SRR1946440.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946440.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18866230
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC222450.1179090894153204No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGAGCG74250.014.36754694
TGAGCGG68550.013.29987294
TATACCG66250.013.2704325
TACCGTG51050.012.2458397
AGCGGGC37500.012.15608394
AGACCGT53750.011.36627394
ATACCGT54550.011.2018996
GTATAGA115550.010.98739051
CCGTGAG47050.010.6887489
TCTATAC107900.010.6750363
GTATATA271500.010.4089141
ACATGAC667800.010.3531488
TCTGAGC132950.010.2509294
CGGGCTG33350.010.21582680-81
ACACATG790350.09.9558656
CACATGA773600.09.9281477
CTATACT86700.09.9233414
CATGACA689150.09.8754649
CATACAC822900.09.8323783
AGGCGTG30400.09.66224690-91