FastQCFastQC Report
Tue 15 Nov 2016
SRR1946306.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946306.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23020854
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG110450.016.0825375
CTATACT115050.014.8300574
TATACCG69200.014.532365
CATACAC687300.013.52023
GTGTATG653000.013.3992951
TCTATAC129750.013.3672433
ACACATG700800.013.0284866
ACATGAC527650.012.9042848
GTCGCGC9000.012.5308418
CATGACA536100.012.4028149
TATACAG102400.012.34470755
GTATATA313750.012.31615451
CACATGA652250.012.2474957
GATTGAG618550.012.215857
TCATACA755000.012.0650632
TGTATGA711300.011.953872
ATCATAC728600.011.9314571
GTATAGA140850.011.7625511
TTGAGTA672050.011.7257619
CTAGGCT55900.011.6876134