FastQCFastQC Report
Tue 15 Nov 2016
SRR1946434.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946434.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25556710
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC13750.010.2493628
ACATGAC887900.010.1475888
GTACTAG96650.010.0688321
CATACAC1195500.09.8576343
ACACATG1140800.09.8087176
CTAGTAC85950.09.7312553
CACATGA1108000.09.6835697
GTATAGA137150.09.6663811
CATGACA914300.09.5719759
TATACCG76250.09.4894075
GTATTAT202500.09.4720891
TATACTG111250.09.4603265
GTATAAA251600.09.4360741
GTATTAA157750.09.4173421
GTATATA349950.09.323181
TCATACA1257300.09.2872172
CTATACT110550.09.1805634
GATTGAG1031150.09.1570027
GTATTAG130800.09.093341
GTGTATG1137900.09.0355641