Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946416.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 14615414 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 5100 | 0.0 | 14.116685 | 5 |
TAGGCGG | 4935 | 0.0 | 14.111193 | 4 |
GCGGATC | 5210 | 0.0 | 13.096184 | 7 |
CTAGGCT | 5220 | 0.0 | 12.7999115 | 4 |
GCTGTCC | 4860 | 0.0 | 12.587715 | 8 |
TAGGCTG | 5915 | 0.0 | 12.489826 | 5 |
GGCGGAT | 5770 | 0.0 | 12.395978 | 6 |
AGGCGGA | 5960 | 0.0 | 12.316572 | 5 |
ATACCGT | 4245 | 0.0 | 12.3043375 | 6 |
TACCGTG | 5005 | 0.0 | 11.7522335 | 7 |
GTACTAG | 7180 | 0.0 | 11.66492 | 1 |
CTAGTAC | 5855 | 0.0 | 11.331305 | 3 |
TCTATAC | 7600 | 0.0 | 11.267964 | 3 |
CTAGGCG | 6895 | 0.0 | 11.259974 | 3 |
CTGTCCC | 6285 | 0.0 | 10.932443 | 9 |
CCGTGAG | 3615 | 0.0 | 10.675178 | 9 |
GCCTAGG | 9895 | 0.0 | 10.223718 | 1 |
CTATACT | 6040 | 0.0 | 10.127345 | 4 |
ACATGAC | 38230 | 0.0 | 10.093677 | 8 |
ACCGTGA | 5615 | 0.0 | 10.057065 | 8 |