FastQCFastQC Report
Tue 15 Nov 2016
SRR1946419.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946419.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14412880
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC148980.10336587829774478No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA28850.013.67821994
TATACCG45400.012.4394685
CTAGTAC69850.011.6555283
GGTCGCC40150.011.58365894
GTCGCGC6151.6574631E-811.4794968
GTATAGA84950.010.8577651
GTACTAC72850.010.5302946
CCTAGTA77500.010.5038462
CGTATGC32850.010.43959294
ACATGAC474000.010.3664218
TAGGCGG34150.010.3352224
GACCGTG35600.010.31162557
TATACTG66500.010.1910115
CATACAC585400.010.0888883
ACACATG573700.010.03284556
CACATGA555750.09.9842827
GTACTAG80200.09.9752161
TAGACCG45850.09.956555
CATGACA499000.09.9134999
GATTGAG507600.09.902217