FastQCFastQC Report
Tue 15 Nov 2016
SRR1946374.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946374.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20428036
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG59750.015.5743415
TATACTG98300.013.6261685
TCTATAC119500.013.5292253
ACATGAC377450.013.0118568
CTATACT99050.013.0010524
CATACAC524950.012.8653383
GTATAGA129000.012.7002231
CTAGTAC65400.012.6478683
CATGACA384900.012.6378979
ACACATG519600.012.527466
TAGTACT116900.012.1415694
TACCGTG54400.012.0951587
CACATGA497350.011.9539327
CCGTGAG49850.011.7849369
GTGTATG500650.011.5380431
GTATAGG72250.011.4682351
TCATACA581400.011.4626122
TAGAGCG33400.011.3977975
ACCGTGA68650.011.364498
GTATTAG115800.011.1801061