FastQCFastQC Report
Tue 15 Nov 2016
SRR1946449.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946449.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40558418
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATACCGT145900.016.3336986
TATACCG171800.016.115785
CCGTGAG125050.016.0483959
TACCGTG142200.015.7668817
ACCGTGA155800.014.5703968
GTATAGA334000.014.0390491
TCTATAC264800.013.331583
CTAGTAC187150.013.1111383
CTGAGCG174050.012.92061794
TGAGCGG165150.012.90473394
CTATACC226900.012.3679874
GTACTAC204050.011.8862526
CCTAGTA212800.011.7299322
AGACCGT104650.011.4188994
TAGTACT391050.010.9988674
TATACTG183000.010.5315425
ACATGAC1095550.010.4075938
CATACAC1526600.010.1366463
ACACATG1493750.010.1229026
TAGAAGT356600.010.1105134