Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946346.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 45217340 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 52272 | 0.1156016696249713 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 16225 | 0.0 | 18.047007 | 5 |
ATACCGT | 13990 | 0.0 | 16.368645 | 6 |
TACCGTG | 12775 | 0.0 | 16.345951 | 7 |
GTCGCGC | 1905 | 0.0 | 16.257807 | 8 |
TCTATAC | 28645 | 0.0 | 15.51345 | 3 |
TATACTG | 21865 | 0.0 | 15.237516 | 5 |
CCGTGAG | 11890 | 0.0 | 14.800024 | 9 |
CATACAC | 146380 | 0.0 | 14.207747 | 3 |
TATACAG | 20785 | 0.0 | 14.11027 | 5 |
ACCGTGA | 16045 | 0.0 | 14.009054 | 8 |
CTATACT | 22630 | 0.0 | 13.830839 | 4 |
ACATGAC | 120055 | 0.0 | 13.700007 | 8 |
GTATAGA | 30335 | 0.0 | 13.562485 | 1 |
ACACATG | 149360 | 0.0 | 13.528521 | 6 |
CACATGA | 143795 | 0.0 | 13.278683 | 7 |
CATGACA | 122195 | 0.0 | 13.275747 | 9 |
CTAGTAC | 14940 | 0.0 | 13.12904 | 3 |
GTGTATG | 139020 | 0.0 | 12.922106 | 1 |
TCATACA | 159475 | 0.0 | 12.885153 | 2 |
CTAGGCT | 12260 | 0.0 | 12.860447 | 4 |