FastQCFastQC Report
Tue 15 Nov 2016
SRR1946393.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946393.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29737428
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT337480.11348661356994291No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG86300.011.2715655
ACATGAC975650.010.3744938
TATACTG128350.010.2880995
CATACAC1346250.010.2461423
GTATATA376750.010.1197331
ACACATG1346200.010.10543256
CACATGA1300000.010.0741597
CATGACA1030700.09.806719
TAGGCTG86750.09.7505195
GTATTAA186500.09.6795211
GTATAGA157000.09.58190251
TCATACA1438250.09.5503232
GTATTAT198450.09.5467461
ATCATAC1359200.09.4423651
GTATATG227900.09.3032271
TCTATAC149800.09.2552513
GTGTATG1294350.09.2072031
TATACAG129750.09.1630035
GCTGTCC86550.09.0670218
GTCTTAG92550.09.04159451