FastQCFastQC Report
Tue 15 Nov 2016
SRR1946436.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946436.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39113990
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC465500.11901112619806878No Hit
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT416160.10639671381007154No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTGAG122250.016.2239919
TATACCG160000.015.6905515
ACCGTGA163150.014.1734848
ATACCGT137100.014.0225386
TACCGTG129150.013.39322957
GTATAGA271650.013.0339821
GTCGCGC20150.012.8288068
TCTATAC244000.012.4467743
CTAGTAC156750.011.8168793
CTATACC222700.010.6607164
TGTAGGG223900.010.6456152
CTGAGCG154550.010.5516294
TATACTG181500.010.5422825
TAGACCG102600.010.5389515
GTACTAC173500.010.4575196
CCTAGTA171150.010.4106832
ACATGAC1425750.010.1796428
GTATTAG195350.010.0613151
TCGCGCG26850.09.9775699
GTAGGGA220850.09.9623673