Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946459.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23493006 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 8045 | 0.0 | 12.459279 | 5 |
TACCGTG | 5660 | 0.0 | 12.388281 | 7 |
ATACCGT | 7105 | 0.0 | 11.921964 | 6 |
GTATAGA | 16250 | 0.0 | 11.72801 | 1 |
CTATACT | 11570 | 0.0 | 11.143896 | 4 |
TCTATAC | 14435 | 0.0 | 10.953094 | 3 |
GTATTAG | 12365 | 0.0 | 10.769982 | 1 |
TATACTG | 11120 | 0.0 | 10.622048 | 5 |
GTATATA | 34755 | 0.0 | 10.601496 | 1 |
CCGTGAG | 5450 | 0.0 | 10.276373 | 9 |
TAGACTG | 5975 | 0.0 | 9.923662 | 5 |
TACACAG | 7790 | 0.0 | 9.786263 | 5 |
CATACAC | 81825 | 0.0 | 9.7016 | 3 |
GTATTAA | 16220 | 0.0 | 9.631854 | 1 |
GTATTAT | 20130 | 0.0 | 9.631104 | 1 |
GTGTATG | 79940 | 0.0 | 9.624457 | 1 |
ACATGAC | 68615 | 0.0 | 9.616015 | 8 |
CTAGTAC | 7605 | 0.0 | 9.5287485 | 3 |
ACCGTGA | 7410 | 0.0 | 9.526629 | 8 |
ACACATG | 82615 | 0.0 | 9.381537 | 6 |