FastQCFastQC Report
Tue 15 Nov 2016
SRR1946379.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946379.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16262912
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG83350.015.6754765
CTATACT88550.015.4449294
ACATGAC328050.014.5987498
TATACCG51450.014.4328875
CATACAC472400.014.4158413
ACACATG441950.014.3350196
GAGCGCG8550.014.291867
CATGACA335000.013.97320659
TCTATAC108950.013.7608393
CACATGA423400.013.6643427
GTATAGA115600.013.6012791
CCGTGCG8850.013.2763389
GTCGCGC6751.8189894E-1213.2291318
GTGTATG450800.013.1680751
TCATACA520150.012.9117512
TATACAG75150.012.6329255
GTATAGG58150.012.6289141
ATCATAC507850.012.4859971
TAATACT128100.012.4741594
TTGAGTA434300.012.195959