Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946381.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26628636 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGACCGG | 9485 | 0.0 | 15.06504 | 94 |
GTCGCGC | 1580 | 0.0 | 14.871138 | 8 |
CTGAGCG | 26980 | 0.0 | 12.892104 | 94 |
TGAGCGG | 24650 | 0.0 | 11.994102 | 94 |
TCGCGCG | 2155 | 0.0 | 11.339372 | 9 |
GTATAGA | 15755 | 0.0 | 10.805327 | 1 |
TCTGAGC | 36925 | 0.0 | 10.298218 | 94 |
GTATTAG | 13570 | 0.0 | 10.188619 | 1 |
GCGTGTA | 7685 | 0.0 | 10.000295 | 92-93 |
GGCGTGT | 8725 | 0.0 | 9.993476 | 90-91 |
TAGGCGG | 6860 | 0.0 | 9.936275 | 4 |
GAGCGGG | 20455 | 0.0 | 9.83509 | 94 |
AGGCGTG | 7950 | 0.0 | 9.755621 | 90-91 |
TATACCG | 8155 | 0.0 | 9.680974 | 5 |
AGCGGGC | 16645 | 0.0 | 9.488325 | 94 |
TGATGGC | 28920 | 0.0 | 9.410535 | 94 |
CTGATGG | 35920 | 0.0 | 9.395549 | 94 |
GGCAGAC | 9165 | 0.0 | 9.385485 | 90-91 |
TATACTG | 12160 | 0.0 | 9.352237 | 5 |
CAGACCG | 9255 | 0.0 | 9.345022 | 92-93 |