FastQCFastQC Report
Tue 15 Nov 2016
SRR1946276.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946276.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43490108
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG221600.014.9291565
TATACCG147650.014.8951445
CTATACT229200.014.0279494
TCTATAC275050.013.5694283
CATACAC1043150.013.3877813
ACACATG1045750.012.8694356
GTGTATG994050.012.7910831
ACATGAC798300.012.4966258
CATGACA802050.012.3209669
GTATAGG156150.012.1795251
CACATGA997450.012.1639467
TACCGTG108450.012.1321527
CTAGTAC131450.011.9794513
TAGTACT249850.011.871424
TCATACA1163150.011.8045262
TAATACT345500.011.6460454
GTATAGA306200.011.6227151
ATCATAC1164150.011.3709661
GTATTAG265800.011.3702771
GATTGAG986600.011.3260937