Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946419.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 14412880 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 14898 | 0.10336587829774478 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 2885 | 0.0 | 13.678219 | 94 |
TATACCG | 4540 | 0.0 | 12.439468 | 5 |
CTAGTAC | 6985 | 0.0 | 11.655528 | 3 |
GGTCGCC | 4015 | 0.0 | 11.583658 | 94 |
GTCGCGC | 615 | 1.6574631E-8 | 11.479496 | 8 |
GTATAGA | 8495 | 0.0 | 10.857765 | 1 |
GTACTAC | 7285 | 0.0 | 10.530294 | 6 |
CCTAGTA | 7750 | 0.0 | 10.503846 | 2 |
CGTATGC | 3285 | 0.0 | 10.439592 | 94 |
ACATGAC | 47400 | 0.0 | 10.366421 | 8 |
TAGGCGG | 3415 | 0.0 | 10.335222 | 4 |
GACCGTG | 3560 | 0.0 | 10.3116255 | 7 |
TATACTG | 6650 | 0.0 | 10.191011 | 5 |
CATACAC | 58540 | 0.0 | 10.088888 | 3 |
ACACATG | 57370 | 0.0 | 10.0328455 | 6 |
CACATGA | 55575 | 0.0 | 9.984282 | 7 |
GTACTAG | 8020 | 0.0 | 9.975216 | 1 |
TAGACCG | 4585 | 0.0 | 9.95655 | 5 |
CATGACA | 49900 | 0.0 | 9.913499 | 9 |
GATTGAG | 50760 | 0.0 | 9.90221 | 7 |