FastQCFastQC Report
Tue 15 Nov 2016
SRR1946369.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946369.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44840442
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG159650.017.6101135
TACCGTG127150.016.386557
ATACCGT145300.015.6629936
TCTATAC289650.015.1037383
GTCGCGC20850.014.1806348
TATACTG220150.014.0711475
CTAGGCT112400.014.0313514
CTATACT226150.013.9891014
CTAGTAC150850.013.97153
CCGTGAG117600.013.9674469
TATACAG190650.013.4911195
GTATAGA298350.013.4629821
ACCGTGA153700.013.3129348
CATACAC1174950.013.1037773
ACATGAC864100.012.855698
CTATACC240750.012.8093054
GCTGTCC119050.012.7725258
TAGGCTG148550.012.7331725
TAGTACT286450.012.6173584
ACACATG1156450.012.5989226