FastQCFastQC Report
Tue 15 Nov 2016
SRR1946320.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946320.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20969754
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG107600.015.3313235
TATACCG68850.014.1302945
CATACAC499650.013.7049823
TAGACTG50950.013.3754565
GTGTATG487850.013.0149211
ACATGAC374350.012.9815788
CTATACT111200.012.9753294
ACACATG507750.012.7551056
CATGACA384850.012.5907619
TCTATAC131350.012.3445083
GTATAGA132650.012.3122691
TATACAG94900.012.133465
CACATGA482550.012.11617
GTCGCGC7401.2732926E-1112.0672048
TAGACCG49800.011.9855835
TCATACA564050.011.9569992
GATTGAG476150.011.7854277
TAGTACT116700.011.7597154
GTATTAT172250.011.7223311
GTATATA313850.011.667381