FastQCFastQC Report
Tue 15 Nov 2016
SRR1946386.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946386.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21986840
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC16450.013.1410448
AGACCGT78700.012.36343794
TATACCG68250.012.1873565
CTGAGCG221400.010.74277694
TCTATAC120100.010.4891273
GTATAGA136600.010.4306751
GGCAGAC67000.010.20783890-91
CTATACT105250.010.182874
CAGACCG71300.010.05372292-93
TCGCGCG21300.09.9282299
CTAGTAC82000.09.8023413
ATACCGT61800.09.7333066
GTATTAT162300.09.6192251
ACATGAC640550.09.5300248
GGCGTGT67450.09.51253690-91
GCGAGGG113750.09.46297594
TACCGTG63250.09.3615537
GTATATA295050.09.35541251
AGCGGGC155000.09.27968794
GCGTGTA59850.09.26753992-93