FastQCFastQC Report
Tue 15 Nov 2016
SRR1946350.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946350.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39627200
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC19100.017.4439668
TATACCG137350.015.6474845
TATACTG204000.014.5376635
CTAGGCT108700.014.5051734
CTATACT202100.014.46554854
TCTATAC248400.014.1873583
CATACAC1009700.013.6451053
TAGGCTG132250.013.51876455
GTATAGA265600.013.3156781
GCTGTCC106800.013.1816668
TATACAG185150.013.0524245
ACACATG986850.012.9244986
GTATATA565250.012.6880491
ACATGAC765500.012.6711368
ATACCGT119750.012.5397776
GTGTATG960750.012.5393021
CATGACA776650.012.3925499
CACATGA943150.012.3391947
GTATAGG151450.012.2806771
GTACTAG153050.012.2443561