Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946280.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40181470 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 14050 | 0.0 | 14.489207 | 5 |
TATACTG | 18905 | 0.0 | 14.399085 | 5 |
CTATACT | 19835 | 0.0 | 12.918205 | 4 |
CATACAC | 111440 | 0.0 | 12.897184 | 3 |
GTCGCGC | 1640 | 0.0 | 12.611122 | 8 |
CTGAGCG | 11425 | 0.0 | 12.603228 | 94 |
TCTATAC | 24735 | 0.0 | 12.507041 | 3 |
ACACATG | 115910 | 0.0 | 12.143093 | 6 |
ACATGAC | 82550 | 0.0 | 12.117122 | 8 |
GTATAGA | 25375 | 0.0 | 12.089802 | 1 |
ATACCGT | 11185 | 0.0 | 11.768482 | 6 |
CATGACA | 84040 | 0.0 | 11.750527 | 9 |
CACATGA | 110945 | 0.0 | 11.690038 | 7 |
TATACAG | 18160 | 0.0 | 11.624212 | 5 |
GTGTATG | 105735 | 0.0 | 11.614468 | 1 |
TCATACA | 124010 | 0.0 | 11.602536 | 2 |
GTATATA | 57055 | 0.0 | 11.322816 | 1 |
GTATAGG | 13525 | 0.0 | 11.306383 | 1 |
ATCATAC | 123415 | 0.0 | 11.2964325 | 1 |
TAGTACT | 22425 | 0.0 | 11.195582 | 4 |