FastQCFastQC Report
Tue 15 Nov 2016
SRR1946456.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946456.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19632648
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGAGCG47100.014.38187294
TATACTG100950.012.2005335
TATACCG62750.012.1362675
TAGACCG44900.011.4120595
ACATGAC482050.010.8909388
GTATTAG116700.010.8012381
CTATACT100850.010.6277864
GTCGCGC9307.2759576E-1210.6130588
CATACAC585550.010.5812083
CATGACA495000.010.4823379
ACACATG581950.010.4681516
GTATATA292700.010.3644591
GTATAGA125000.010.3097981
CCGTGCG12000.010.1832489
CACATGA571700.010.1541587
GTATTAT148100.09.9720451
ATACCGT54850.09.8553466
TCGCGCG11001.8189894E-129.827199
TCTATAC114500.09.8124233
CCGACCG23950.09.8120269