Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946415.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34762914 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACCGTG | 7210 | 0.0 | 11.602047 | 7 |
TATACCG | 10465 | 0.0 | 11.590218 | 5 |
TATACTG | 16190 | 0.0 | 10.831114 | 5 |
CTATACT | 17195 | 0.0 | 10.826572 | 4 |
TAGACCG | 9020 | 0.0 | 10.788845 | 5 |
GTCGCGC | 1385 | 0.0 | 10.51989 | 8 |
ACATGAC | 101180 | 0.0 | 10.372736 | 8 |
CCGTGAG | 8300 | 0.0 | 10.308727 | 9 |
CATACAC | 122145 | 0.0 | 10.30324 | 3 |
ACACATG | 123205 | 0.0 | 10.238549 | 6 |
GTATTAG | 19915 | 0.0 | 10.151172 | 1 |
CACATGA | 118050 | 0.0 | 10.063776 | 7 |
CTAGTAC | 12885 | 0.0 | 10.03343 | 3 |
GTATAGA | 21480 | 0.0 | 9.958756 | 1 |
CATGACA | 105220 | 0.0 | 9.923435 | 9 |
GTGTATG | 113500 | 0.0 | 9.883314 | 1 |
TCTATAC | 19980 | 0.0 | 9.835172 | 3 |
GTATATA | 51975 | 0.0 | 9.83248 | 1 |
GTACTAG | 15275 | 0.0 | 9.75677 | 1 |
GATTGAG | 104815 | 0.0 | 9.617312 | 7 |