FastQCFastQC Report
Tue 15 Nov 2016
SRR1946371.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946371.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41750846
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG151050.017.5559625
TCTATAC276600.015.5277493
ATACCGT143000.015.2590316
CTATACT212150.014.6909734
TACCGTG122250.014.6253017
CTAGTAC142450.014.3998693
TATACTG214400.014.3826035
CCGTGAG117000.014.1997439
ACCGTGA150900.013.4668648
GTATAGA300950.013.4241311
GTATAGG147400.013.1623861
CTATACC230850.013.0942764
TAGGCCG36950.012.5752795
GAGCGCG26900.012.5605597
GTACTAG182700.012.3419781
CATACAC967700.012.330323
TAGTACT276550.012.0506434
CCTAGTA170050.012.0363322
GTGTATG955900.011.9960261
CTAGGCT103050.011.8882534