FastQCFastQC Report
Tue 15 Nov 2016
SRR1946353.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946353.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45238810
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT238900.014.8571964
TATACTG233750.014.5212655
TATACCG133400.013.6198675
TATACAG209100.013.4939225
TCTATAC271600.013.4314373
CTAGTAC140800.013.3712783
CATACAC1305400.013.235353
TAGACCG105200.013.0312145
GTATAGG153850.013.0084381
GTCGCGC18050.012.7463288
ACATGAC932150.012.7388228
ACACATG1239650.012.6801756
CATGACA956500.012.34589
CACATGA1191850.012.2438097
TAGTACT268200.012.2012754
TATACTA405150.012.1208645
GTATATA624850.012.0598431
TACCGTG110950.012.0184417
GTGTATG1256250.011.9782661
TCATACA1453950.011.8293372