FastQCFastQC Report
Tue 15 Nov 2016
SRR1946363.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946363.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46870174
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT231500.014.9834684
CTAGGCT124600.013.8627274
TATACTG236350.013.7420585
TATACCG141300.013.5192795
CATACAC1198950.013.3268433
TCTATAC278900.013.3127193
TATACAG212500.012.9431495
ACATGAC918750.012.831488
ACACATG1192950.012.6932356
GTATATA628650.012.3526941
GTGTATG1170150.012.3171861
CATGACA940900.012.289899
CACATGA1143850.012.2336867
TATACTA413600.012.1083555
GTCTAGG107350.011.9469841
GTATAGA292550.011.8991461
TCATACA1327350.011.8903382
GCTGTCC130700.011.7774898
ATCATAC1297600.011.7192431
TAGGCTG154100.011.6653395