FastQCFastQC Report
Tue 15 Nov 2016
SRR1946336.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946336.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54086646
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGTAC202500.015.1732923
TATACCG165950.014.1264785
CTATACT289350.014.0449344
TCTATAC338450.014.020193
TATACTG290800.013.8935965
GTACTAG239800.013.685121
GTATAGG184200.013.4512721
CATACAC1354250.013.4188323
ACATGAC1060750.012.7245158
ACACATG1336100.012.6583936
CCTAGTA226100.012.5920932
GTATAGA358000.012.52874851
TAGTACT383100.012.4965214
TATACAG256600.012.4864315
CATGACA1056250.012.4228969
CACATGA1293450.012.1460557
GACCGTG100300.012.1315837
TAGACCG144250.011.9851265
GTGTATG1272150.011.9336171
GTATATA810900.011.8858151