Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946421.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 14347624 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 6290 | 0.0 | 11.222283 | 5 |
TCTATAC | 7510 | 0.0 | 10.839718 | 3 |
TATACCG | 4795 | 0.0 | 10.795549 | 5 |
CTAGTAC | 4905 | 0.0 | 10.744614 | 3 |
CTAGGCT | 3860 | 0.0 | 10.605881 | 4 |
GTATAGA | 8615 | 0.0 | 10.596545 | 1 |
GTATTAG | 7525 | 0.0 | 10.568128 | 1 |
GTATATA | 19580 | 0.0 | 10.47832 | 1 |
GTACTAG | 6025 | 0.0 | 10.465635 | 1 |
GTATTAT | 10195 | 0.0 | 10.015909 | 1 |
TAGTACT | 9365 | 0.0 | 9.948835 | 4 |
ACATGAC | 43040 | 0.0 | 9.917622 | 8 |
CATACAC | 52590 | 0.0 | 9.878197 | 3 |
ACACATG | 52705 | 0.0 | 9.73233 | 6 |
GTGTATG | 48970 | 0.0 | 9.666867 | 1 |
CACATGA | 50840 | 0.0 | 9.65437 | 7 |
GTCTAGG | 3195 | 0.0 | 9.573271 | 1 |
GTGTAGG | 5060 | 0.0 | 9.485659 | 1 |
TAGACAG | 4665 | 0.0 | 9.482369 | 5 |
CTATACT | 6055 | 0.0 | 9.481138 | 4 |