Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946368.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33372866 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 17185 | 0.0 | 16.252007 | 5 |
TATACCG | 11510 | 0.0 | 15.415444 | 5 |
CTAGTAC | 10945 | 0.0 | 14.282785 | 3 |
TCTATAC | 21570 | 0.0 | 14.255276 | 3 |
CTATACT | 17770 | 0.0 | 14.159295 | 4 |
GTATAGG | 11760 | 0.0 | 13.584702 | 1 |
TATACAG | 16405 | 0.0 | 13.448108 | 5 |
CATACAC | 78330 | 0.0 | 13.035138 | 3 |
TACCGTG | 8975 | 0.0 | 12.759121 | 7 |
TAGGCTG | 9630 | 0.0 | 12.721954 | 5 |
GTATAGA | 23285 | 0.0 | 12.692667 | 1 |
ATACCGT | 10805 | 0.0 | 12.508628 | 6 |
GTATATA | 51005 | 0.0 | 12.491812 | 1 |
CTAGGCT | 8280 | 0.0 | 12.359203 | 4 |
GTGTATG | 74955 | 0.0 | 12.236514 | 1 |
GTACTAG | 13895 | 0.0 | 12.207512 | 1 |
ACACATG | 78170 | 0.0 | 12.072963 | 6 |
TAGTACT | 21755 | 0.0 | 11.889314 | 4 |
ACATGAC | 57620 | 0.0 | 11.803176 | 8 |
CATGACA | 56900 | 0.0 | 11.655504 | 9 |