Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946373.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19295600 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 9110 | 0.0 | 14.548404 | 5 |
TATACCG | 6170 | 0.0 | 13.558745 | 5 |
GTCGCGC | 955 | 0.0 | 13.287554 | 8 |
CATACAC | 48820 | 0.0 | 12.765315 | 3 |
TCTATAC | 11490 | 0.0 | 12.762047 | 3 |
TATACAG | 8665 | 0.0 | 12.746294 | 5 |
GTATAGA | 11740 | 0.0 | 12.190298 | 1 |
TAGACCG | 4640 | 0.0 | 12.154803 | 5 |
GTACTAG | 7770 | 0.0 | 12.117635 | 1 |
CCGTGAG | 4865 | 0.0 | 12.075686 | 9 |
ACACATG | 48795 | 0.0 | 11.962748 | 6 |
ACATGAC | 36290 | 0.0 | 11.914765 | 8 |
CTATACT | 9690 | 0.0 | 11.834521 | 4 |
TAATACT | 14820 | 0.0 | 11.606934 | 4 |
TAGTACT | 12105 | 0.0 | 11.531248 | 4 |
TCATACA | 53880 | 0.0 | 11.409482 | 2 |
GTATATA | 29155 | 0.0 | 11.3837385 | 1 |
CACATGA | 47705 | 0.0 | 11.329704 | 7 |
ACCGTGA | 6730 | 0.0 | 11.313177 | 8 |
CATGACA | 37475 | 0.0 | 11.299724 | 9 |