Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946297.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41978270 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 21630 | 0.0 | 15.541322 | 5 |
CTATACT | 22800 | 0.0 | 14.414082 | 4 |
CATACAC | 97715 | 0.0 | 14.1652355 | 3 |
GAGCGCG | 2450 | 0.0 | 13.238701 | 7 |
ACATGAC | 68855 | 0.0 | 13.182296 | 8 |
TATACCG | 13275 | 0.0 | 13.174885 | 5 |
CTGAGCG | 10645 | 0.0 | 13.173652 | 94 |
GTATAGA | 29295 | 0.0 | 13.138496 | 1 |
GTGTATG | 91740 | 0.0 | 13.078783 | 1 |
ACACATG | 95885 | 0.0 | 13.055848 | 6 |
CATGACA | 70065 | 0.0 | 12.72574 | 9 |
TCTATAC | 26860 | 0.0 | 12.708019 | 3 |
TAATACT | 34360 | 0.0 | 12.629704 | 4 |
CACATGA | 91275 | 0.0 | 12.468245 | 7 |
TATACAG | 19460 | 0.0 | 12.369883 | 5 |
GCCGTGC | 4340 | 0.0 | 12.346941 | 8 |
GTATAGG | 14875 | 0.0 | 12.146751 | 1 |
TCATACA | 110195 | 0.0 | 12.127189 | 2 |
ATACTGT | 22185 | 0.0 | 12.120519 | 6 |
GTATATA | 62765 | 0.0 | 12.077134 | 1 |