Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946306.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23020854 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 11045 | 0.0 | 16.082537 | 5 |
CTATACT | 11505 | 0.0 | 14.830057 | 4 |
TATACCG | 6920 | 0.0 | 14.53236 | 5 |
CATACAC | 68730 | 0.0 | 13.5202 | 3 |
GTGTATG | 65300 | 0.0 | 13.399295 | 1 |
TCTATAC | 12975 | 0.0 | 13.367243 | 3 |
ACACATG | 70080 | 0.0 | 13.028486 | 6 |
ACATGAC | 52765 | 0.0 | 12.904284 | 8 |
GTCGCGC | 900 | 0.0 | 12.530841 | 8 |
CATGACA | 53610 | 0.0 | 12.402814 | 9 |
TATACAG | 10240 | 0.0 | 12.3447075 | 5 |
GTATATA | 31375 | 0.0 | 12.3161545 | 1 |
CACATGA | 65225 | 0.0 | 12.247495 | 7 |
GATTGAG | 61855 | 0.0 | 12.21585 | 7 |
TCATACA | 75500 | 0.0 | 12.065063 | 2 |
TGTATGA | 71130 | 0.0 | 11.95387 | 2 |
ATCATAC | 72860 | 0.0 | 11.931457 | 1 |
GTATAGA | 14085 | 0.0 | 11.762551 | 1 |
TTGAGTA | 67205 | 0.0 | 11.725761 | 9 |
CTAGGCT | 5590 | 0.0 | 11.687613 | 4 |