Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946442.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28970968 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC | 35964 | 0.12413806815153709 | No Hit |
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT | 32749 | 0.11304075169321232 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGAGCGG | 10745 | 0.0 | 16.226484 | 94 |
CTGAGCG | 10855 | 0.0 | 14.979704 | 94 |
AGACCGG | 6690 | 0.0 | 13.276775 | 94 |
GTCGCGC | 1265 | 0.0 | 12.260603 | 8 |
AGGCGTG | 4635 | 0.0 | 11.407736 | 90-91 |
TCGCGCG | 1730 | 0.0 | 10.866704 | 9 |
TATACTG | 12885 | 0.0 | 10.79965 | 5 |
ACATGAC | 102980 | 0.0 | 10.74797 | 8 |
CTAGTAC | 9290 | 0.0 | 10.7279825 | 3 |
GTATAGA | 17705 | 0.0 | 10.6490135 | 1 |
TATACCG | 9200 | 0.0 | 10.373149 | 5 |
CATACAC | 137135 | 0.0 | 10.342485 | 3 |
GTACTAG | 11125 | 0.0 | 10.312185 | 1 |
CATGACA | 107240 | 0.0 | 10.285851 | 9 |
ACACATG | 133965 | 0.0 | 10.153834 | 6 |
GTATTAG | 14555 | 0.0 | 10.0786705 | 1 |
GCGTGTA | 5060 | 0.0 | 10.031056 | 92-93 |
CACATGA | 129045 | 0.0 | 9.979816 | 7 |
TGGCGCG | 5300 | 0.0 | 9.97582 | 78-79 |
GGCTGGC | 5150 | 0.0 | 9.945605 | 82-83 |