Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946270.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19946584 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGC | 715 | 0.0 | 17.754599 | 8 |
TATACCG | 6470 | 0.0 | 13.739407 | 5 |
TCGCGCG | 1005 | 0.0 | 12.631539 | 9 |
TCTATAC | 12290 | 0.0 | 11.212464 | 3 |
TATACTG | 9770 | 0.0 | 11.168731 | 5 |
CTATACT | 9795 | 0.0 | 10.707981 | 4 |
ACTGTGC | 2725 | 0.0 | 10.697402 | 8 |
ATACCGT | 5765 | 0.0 | 10.439433 | 6 |
CATACAC | 55185 | 0.0 | 10.3036375 | 3 |
GTATAGA | 12690 | 0.0 | 10.086224 | 1 |
TATACAG | 8500 | 0.0 | 10.01544 | 5 |
TACCGTG | 5215 | 0.0 | 10.00784 | 7 |
CTAGGCT | 4755 | 0.0 | 9.891375 | 4 |
ACACATG | 54845 | 0.0 | 9.858867 | 6 |
TAGGCTG | 5930 | 0.0 | 9.83507 | 5 |
GCTGTCC | 4945 | 0.0 | 9.793188 | 8 |
CCGTGAG | 4180 | 0.0 | 9.673436 | 9 |
ACATGAC | 45315 | 0.0 | 9.4313755 | 8 |
CCCTATA | 7075 | 0.0 | 9.305692 | 2 |
GTCTAGG | 4065 | 0.0 | 9.260848 | 1 |