FastQCFastQC Report
Tue 15 Nov 2016
SRR1946348.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946348.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46937650
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG163600.016.951415
TACCGTG125150.016.4978627
TCTATAC306150.015.189483
TATACTG240500.014.8676235
ATACCGT150650.014.8578196
CTAGTAC160950.014.4025543
CTATACT246400.013.8070474
GTATAGA335400.013.6522051
CCGTGAG124400.013.6173959
ACCGTGA164700.013.2769878
CATACAC1263450.013.2293753
ACATGAC944900.012.8574088
CTATACC234850.012.8476574
ACACATG1264800.012.6068726
CATGACA958550.012.3854839
CCTAGTA184900.012.3085642
GTACTAG207550.012.1736511
CACATGA1227150.012.1485777
GTATAGG161300.012.1121231
GTATATA712800.011.9978521