FastQCFastQC Report
Tue 15 Nov 2016
SRR1946280.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946280.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40181470
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG140500.014.4892075
TATACTG189050.014.3990855
CTATACT198350.012.9182054
CATACAC1114400.012.8971843
GTCGCGC16400.012.6111228
CTGAGCG114250.012.60322894
TCTATAC247350.012.5070413
ACACATG1159100.012.1430936
ACATGAC825500.012.1171228
GTATAGA253750.012.0898021
ATACCGT111850.011.7684826
CATGACA840400.011.7505279
CACATGA1109450.011.6900387
TATACAG181600.011.6242125
GTGTATG1057350.011.6144681
TCATACA1240100.011.6025362
GTATATA570550.011.3228161
GTATAGG135250.011.3063831
ATCATAC1234150.011.29643251
TAGTACT224250.011.1955824