FastQCFastQC Report
Tue 15 Nov 2016
SRR1946284.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946284.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20487664
Sequences flagged as poor quality0
Sequence length100
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG66000.015.3101335
TATACTG96150.015.1040585
CTATACT103300.014.4225944
GTCGCGC9300.014.1501018
CATACAC622700.014.09153653
ACATGAC442500.013.9668018
GTGTATG587700.013.9660791
GCCGTGC18550.013.6815188
ACACATG588850.013.672166
CATGACA455750.013.4885579
TCTATAC120350.013.3168423
TATACAG95650.013.266715
TAATACT169500.013.0320454
CACATGA558200.012.9662787
TCATACA689150.012.7739562
GATTGAG555550.012.7235747
TGTATGA624550.012.6578572
ATCATAC677100.012.5113271
GTATAGG72800.012.4769851
TTGAGTA581350.012.3691039