FastQCFastQC Report
Tue 15 Nov 2016
SRR1946338.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946338.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56786770
Sequences flagged as poor quality0
Sequence length100
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG181400.015.9274445
TATACTG279550.015.4105495
CTATACT286550.014.0673764
TCTATAC340600.013.7523453
CATACAC1454600.013.5040123
TATACAG259750.013.3658685
TACCGTG143600.013.2826427
CTAGTAC180800.012.9666673
GTATAGA359900.012.7494831
ACATGAC1135000.012.6535528
ACACATG1528600.012.6316496
GTGTATG1354000.012.50691
ATACCGT163150.012.3532816
CACATGA1449800.012.1516717
CATGACA1162800.012.132869
TAGGCTG181050.012.0400355
GTATATA796800.011.930441
GTATAGG202200.011.8813111
TCATACA1639000.011.844212
ATCATAC1591250.011.5403371