FastQCFastQC Report
Tue 15 Nov 2016
SRR1946295.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946295.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22878084
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT121750.013.9757994
TCTATAC146250.013.8200513
TATACTG118700.013.8173995
TATACCG68450.013.2505965
CTAGTAC71400.012.9689563
ACATGAC448350.012.5143258
CATACAC577100.012.3476733
CCGTGCG13150.012.1498959
ACACATG530000.012.0495676
GTGTATG554950.012.02909851
GTATATA322700.012.0209551
GTATAGA151250.011.9832891
CATGACA461400.011.9668449
TAGTACT130600.011.6250924
TATACAG103100.011.5778165
CCGTGCC18700.011.5594079
CACATGA507950.011.5456067
TAATACT182450.011.5159744
TAGGGTG55000.011.2787995
GCCGTGC26300.011.2565458