FastQCFastQC Report
Tue 15 Nov 2016
SRR1946357.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946357.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43965774
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG227550.014.7720475
CTATACT234000.013.623064
TCTATAC272900.013.5735753
GTATAGG147800.013.286851
TATACCG131600.013.2349565
CATACAC1143550.013.207383
TATACAG205650.012.7610855
ACACATG1178250.012.43998056
ACATGAC964650.012.2947278
GTGTATG1088600.012.1487131
CATGACA958200.012.0589879
CACATGA1141850.011.9120757
CTAGTAC146600.011.8171613
GACCGTG70950.011.7791937
GTACTAG173050.011.7553741
TGTAGGG187450.011.747442
GTATTAG250000.011.7076091
TCATACA1292900.011.6572452
GTATAGA288350.011.5843011
ACCGTGC51900.011.4892518