FastQCFastQC Report
Tue 15 Nov 2016
SRR1946308.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946308.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38318850
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG117600.011.1147835
GTCGCGC25350.010.7547418
TCTATAC219500.010.7109363
TATACTG182300.010.7034795
CTATACT189100.010.6676014
CATACAC1007650.010.3734133
GTATATA573900.010.11813451
TATACAG173300.010.0655815
TCGCGCG31550.09.9822059
GTATAGA233850.09.9606881
ACATGAC846250.09.8149428
ACACATG1054250.09.8136436
TAATACT307400.09.6827974
GTATTAG209650.09.6739511
GTGTATG969900.09.60637951
CACATGA1000900.09.49156957
CTAGGCT97000.09.3559224
CATGACA889450.09.3488329
ATACCGT102800.09.23666
TACCGTG87550.09.2349537