Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946282.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 16018298 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 5900 | 0.0 | 15.452184 | 5 |
CATACAC | 44480 | 0.0 | 14.477497 | 3 |
ACATGAC | 30860 | 0.0 | 14.298286 | 8 |
CTATACT | 8375 | 0.0 | 14.255637 | 4 |
ATACCGT | 4850 | 0.0 | 14.243023 | 6 |
CATGACA | 32105 | 0.0 | 13.773044 | 9 |
TCTATAC | 10230 | 0.0 | 13.738309 | 3 |
ACACATG | 45315 | 0.0 | 13.709324 | 6 |
GTATAGG | 5605 | 0.0 | 13.688257 | 1 |
TATACTG | 7395 | 0.0 | 13.472177 | 5 |
CACATGA | 43305 | 0.0 | 13.466419 | 7 |
TACCGTG | 4225 | 0.0 | 13.346671 | 7 |
TCATACA | 48690 | 0.0 | 13.071235 | 2 |
GTGTATG | 44225 | 0.0 | 12.995231 | 1 |
GTATATA | 25200 | 0.0 | 12.925331 | 1 |
CTAGTAC | 5575 | 0.0 | 12.815526 | 3 |
ACTGTGC | 2665 | 0.0 | 12.519168 | 8 |
ATCATAC | 50075 | 0.0 | 12.511035 | 1 |
GTATAGA | 10885 | 0.0 | 12.324025 | 1 |
GATTGAG | 43065 | 0.0 | 12.232059 | 7 |