FastQCFastQC Report
Tue 15 Nov 2016
SRR1946385.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946385.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21575790
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGG99400.014.84855794
AGACCGG64700.014.45738894
CTGAGCG136500.014.29079794
GTCGCGC11000.013.6705058
TGAGCGG125250.013.510324594
GATGGCG111400.011.89884994
TGATGGC157550.011.69522794
TATACCG72150.011.0725065
ATACCGT65800.011.0697066
TCGCGCG13600.011.0571039
GGCAGAC56250.010.94686590-91
GTATAGA143400.010.9194361
TATACTG98600.010.5805775
GGCGTGT51450.010.50638990-91
CCGTGAG52800.010.324159
CTAGTAC81350.010.1693243
CATACAC788200.09.8934323
AGGCGTG44850.09.85159290-91
TCTATAC129150.09.826673
ACACATG780300.09.7743356