Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946275.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23607574 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 11985 | 0.0 | 15.91927 | 5 |
TATACCG | 8575 | 0.0 | 15.399523 | 5 |
CATACAC | 68405 | 0.0 | 14.072195 | 3 |
ACATGAC | 53935 | 0.0 | 13.922649 | 8 |
TCTATAC | 14765 | 0.0 | 13.847632 | 3 |
CTATACT | 11940 | 0.0 | 13.541721 | 4 |
ACACATG | 69435 | 0.0 | 13.521919 | 6 |
ATACCGT | 7065 | 0.0 | 13.50222 | 6 |
TACCGTG | 6360 | 0.0 | 13.447201 | 7 |
TAGGCTG | 6570 | 0.0 | 13.375541 | 5 |
CATGACA | 56220 | 0.0 | 13.3483925 | 9 |
CACATGA | 66465 | 0.0 | 13.28469 | 7 |
GTATAGA | 15550 | 0.0 | 13.256917 | 1 |
TAGGCCG | 2665 | 0.0 | 13.225106 | 5 |
GTCGCGC | 915 | 0.0 | 12.839105 | 8 |
GTGTATG | 65815 | 0.0 | 12.7862 | 1 |
CTAGGCT | 5890 | 0.0 | 12.688246 | 4 |
TCATACA | 77075 | 0.0 | 12.538031 | 2 |
GCTGTCC | 5790 | 0.0 | 12.255024 | 8 |
ATCATAC | 75920 | 0.0 | 12.237417 | 1 |