FastQCFastQC Report
Tue 15 Nov 2016
SRR1946389.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946389.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29291556
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG105350.013.2482075
ATACCGT84900.012.8968456
TACCGTG73550.012.3950527
CCGTGAG68500.011.7310149
GTATAGA188200.011.3189661
TCTATAC167350.010.6172793
GTCGCGC18150.010.6154038
AGACCGG81200.010.47755794
TATACTG133600.010.2709735
ACCGTGA99950.09.967418
CATACAC1082500.09.9481953
ACATGAC851350.09.7589568
ACACATG1086350.09.5989286
CACATGA1048300.09.3599637
CTGAGCG200850.09.33767194
GTACTAG131000.09.2972951
GCTGTCC71900.09.2808718
TCATACA1152900.09.2661882
GTATTAT236100.09.261581
TAGGCGG65650.09.2365144