Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946387.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33365914 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 10685 | 0.0 | 13.546316 | 5 |
CTGAGCG | 16695 | 0.0 | 12.782525 | 94 |
CCGTGAG | 8860 | 0.0 | 12.093302 | 9 |
GTCGCGC | 1830 | 0.0 | 11.812717 | 8 |
CTAGTAC | 14450 | 0.0 | 11.450299 | 3 |
ATACCGT | 9605 | 0.0 | 11.351041 | 6 |
TCTGAGC | 28280 | 0.0 | 11.003373 | 94 |
TATACTG | 14910 | 0.0 | 10.810891 | 5 |
GTATAGA | 20975 | 0.0 | 10.671115 | 1 |
ACCGTGA | 11795 | 0.0 | 10.637913 | 8 |
AGACCGA | 12175 | 0.0 | 10.346967 | 94 |
TACCGTG | 9195 | 0.0 | 10.221658 | 7 |
TCTATAC | 19130 | 0.0 | 9.951352 | 3 |
GTATTAG | 17960 | 0.0 | 9.79197 | 1 |
GTATTAT | 23835 | 0.0 | 9.686594 | 1 |
ACATGAC | 99005 | 0.0 | 9.507512 | 8 |
CCTAGTA | 16070 | 0.0 | 9.450434 | 2 |
TAGACCG | 8250 | 0.0 | 9.398857 | 5 |
TAGTACT | 28130 | 0.0 | 9.374487 | 4 |
TCGCGCG | 2360 | 0.0 | 9.359003 | 9 |