FastQCFastQC Report
Tue 15 Nov 2016
SRR1946426.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946426.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31614188
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC353990.11197187794290335No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG105450.012.7870745
ATACCGT84200.011.8832546
TACCGTG83700.011.1684977
TCTATAC169450.011.1194323
GTATAGA193300.011.1140521
CCGTGAG75700.010.8594539
CTAGTAC119300.010.6735453
ACATGAC1046900.010.1676328
TAGACCG69400.010.0193175
GTACTAG144450.09.9909981
GCTGTCC79000.09.9895818
CATACAC1243600.09.9029863
TAGTACT204350.09.8866454
GTATATA462950.09.8294531
ACACATG1249000.09.8012126
CACATGA1207200.09.7553377
TATACAG128500.09.652435
CTAGGCT88300.09.6310354
TATACTG140550.09.6271455
TAGGCCG43950.09.6209835