FastQCFastQC Report
Tue 15 Nov 2016
SRR1946390.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946390.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26542230
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC20300.013.6581628
TCGCGCG24950.011.4893969
AGGTCGC34300.011.0975936
TATACCG82250.010.7413755
TATACTG112150.010.5174975
GTATAGA156750.010.2893141
GTATATA355450.010.0406791
TGAGCGG140100.09.83023694
CATACAC1094300.09.540253
ACATGAC809450.09.5211668
ACACATG1072800.09.3303686
GTATTAT226000.09.3211481
TCTATAC144450.09.1765443
TAGGCGG67750.09.1583824
CACATGA1022950.09.1372757
GTATTAG132000.09.0837691
GTATAAA264600.09.0631711
GTATTAA170550.09.0431971
CATGACA849050.09.0051769
GTGTATG1048550.08.9420241