Basic Statistics
Measure | Value |
---|---|
Filename | SRR1946335.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43537758 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 14565 | 0.0 | 15.546654 | 5 |
TATACTG | 22725 | 0.0 | 15.153064 | 5 |
CTAGTAC | 15660 | 0.0 | 14.250192 | 3 |
CTATACT | 22525 | 0.0 | 14.015974 | 4 |
GTCGCGC | 1650 | 0.0 | 13.951454 | 8 |
TCTATAC | 28100 | 0.0 | 13.876841 | 3 |
CATACAC | 111670 | 0.0 | 13.496361 | 3 |
TACCGTG | 11125 | 0.0 | 13.302029 | 7 |
ACACATG | 110155 | 0.0 | 12.849945 | 6 |
CCGTGAG | 11575 | 0.0 | 12.784888 | 9 |
ACATGAC | 80675 | 0.0 | 12.718064 | 8 |
TATACAG | 20475 | 0.0 | 12.619412 | 5 |
GTATAGG | 15065 | 0.0 | 12.607788 | 1 |
CATGACA | 81725 | 0.0 | 12.491429 | 9 |
GTACTAG | 20115 | 0.0 | 12.480957 | 1 |
TAGTACT | 30825 | 0.0 | 12.436721 | 4 |
GTATAGA | 29910 | 0.0 | 12.370436 | 1 |
CACATGA | 105945 | 0.0 | 12.300799 | 7 |
TGTAGGG | 20500 | 0.0 | 12.237881 | 2 |
ATACCGT | 13235 | 0.0 | 12.104219 | 6 |