FastQCFastQC Report
Tue 15 Nov 2016
SRR1946427.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1946427.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24892760
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT263740.10595048520131958No Hit
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC252090.10127040954880054No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCGC10650.011.9094388
CTAGTAC86150.011.7813753
TCTATAC141250.011.7431263
TATACCG80100.011.6726195
GTATAGA151250.011.2832191
CCGTGAG58800.011.1048989
TAGTACT174000.010.7203964
GTACTAC101250.010.6246796
CTATACT111100.010.5729344
ATACCGT69050.010.476896
CATACAC971750.010.4688953
ACACATG944650.010.4330176
ACATGAC713450.010.2913548
CCTAGTA101200.010.2151132
CACATGA896600.09.9914027
GTACTAG100800.09.9810241
TATACTG114600.09.8805285
CATGACA743600.09.7856389
TACCGTG57450.09.7304167
TCATACA1049950.09.720582